Query 028686
Match_columns 205
No_of_seqs 126 out of 1716
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 15:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.5E-44 3.3E-49 257.6 21.5 174 2-176 8-182 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.9E-43 8.5E-48 249.7 20.0 198 2-203 21-221 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 4E-43 8.6E-48 249.5 19.2 195 2-203 4-200 (200)
4 KOG0078 GTP-binding protein SE 100.0 3.2E-41 7E-46 243.9 22.3 173 2-175 11-183 (207)
5 cd04120 Rab12 Rab12 subfamily. 100.0 4.5E-39 9.7E-44 240.2 25.3 198 4-202 1-202 (202)
6 KOG0394 Ras-related GTPase [Ge 100.0 7.8E-40 1.7E-44 230.7 17.5 169 3-171 9-183 (210)
7 KOG0098 GTPase Rab2, small G p 100.0 4.1E-39 8.9E-44 227.5 20.0 171 3-174 6-176 (216)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-38 6.8E-43 236.4 23.8 176 4-180 1-182 (201)
9 KOG0079 GTP-binding protein H- 100.0 1.9E-39 4.2E-44 220.9 15.5 178 4-183 9-187 (198)
10 KOG0080 GTPase Rab18, small G 100.0 8.4E-39 1.8E-43 220.6 18.4 182 3-185 11-193 (209)
11 cd04121 Rab40 Rab40 subfamily. 100.0 6.1E-38 1.3E-42 232.0 23.6 165 2-168 5-169 (189)
12 cd04144 Ras2 Ras2 subfamily. 100.0 5.1E-38 1.1E-42 233.3 22.1 185 5-203 1-188 (190)
13 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.8E-38 8.2E-43 227.1 19.8 169 3-172 14-182 (222)
14 PLN03110 Rab GTPase; Provision 100.0 3.4E-37 7.4E-42 233.0 26.0 167 3-170 12-178 (216)
15 cd04126 Rab20 Rab20 subfamily. 100.0 1.3E-37 2.8E-42 234.9 22.8 188 4-202 1-220 (220)
16 cd04110 Rab35 Rab35 subfamily. 100.0 7.3E-37 1.6E-41 228.6 24.7 168 3-172 6-173 (199)
17 cd01875 RhoG RhoG subfamily. 100.0 4.4E-37 9.6E-42 228.4 22.9 165 1-167 1-178 (191)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 8.2E-37 1.8E-41 231.7 24.7 169 2-172 12-194 (232)
19 cd04112 Rab26 Rab26 subfamily. 100.0 1E-36 2.3E-41 226.4 23.6 190 4-202 1-191 (191)
20 cd04125 RabA_like RabA-like su 100.0 3.2E-36 7E-41 223.2 24.6 167 4-171 1-167 (188)
21 cd04122 Rab14 Rab14 subfamily. 100.0 2.2E-36 4.8E-41 219.8 22.6 164 3-167 2-165 (166)
22 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.4E-36 2.9E-41 223.7 21.4 162 3-166 5-180 (182)
23 cd04133 Rop_like Rop subfamily 100.0 1.3E-36 2.9E-41 222.5 20.9 162 3-166 1-173 (176)
24 cd04111 Rab39 Rab39 subfamily. 100.0 8.1E-36 1.8E-40 224.7 25.5 170 3-173 2-173 (211)
25 KOG0086 GTPase Rab4, small G p 100.0 7.8E-37 1.7E-41 209.4 17.8 174 3-177 9-182 (214)
26 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.9E-36 1.1E-40 226.4 23.9 170 3-174 1-184 (222)
27 cd04109 Rab28 Rab28 subfamily. 100.0 6.2E-36 1.4E-40 226.1 24.5 164 4-168 1-168 (215)
28 cd04131 Rnd Rnd subfamily. Th 100.0 2.6E-36 5.7E-41 221.6 21.4 162 3-166 1-176 (178)
29 PTZ00369 Ras-like protein; Pro 100.0 3.8E-36 8.1E-41 223.1 21.9 168 1-170 3-171 (189)
30 cd04118 Rab24 Rab24 subfamily. 100.0 1.3E-35 2.9E-40 220.8 24.6 168 4-172 1-172 (193)
31 KOG0091 GTPase Rab39, small G 100.0 7.6E-37 1.6E-41 211.6 16.1 200 3-203 8-213 (213)
32 cd01867 Rab8_Rab10_Rab13_like 100.0 1.1E-35 2.4E-40 216.4 22.5 165 2-167 2-166 (167)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.3E-35 2.8E-40 217.0 22.0 163 3-167 2-165 (172)
34 cd04117 Rab15 Rab15 subfamily. 100.0 1.7E-35 3.7E-40 214.2 21.7 160 4-164 1-160 (161)
35 PF00071 Ras: Ras family; Int 100.0 1.8E-35 3.9E-40 214.0 21.7 161 5-166 1-161 (162)
36 cd01865 Rab3 Rab3 subfamily. 100.0 3.1E-35 6.7E-40 213.6 23.0 163 4-167 2-164 (165)
37 cd04132 Rho4_like Rho4-like su 100.0 2.8E-35 6E-40 218.0 22.5 166 4-171 1-172 (187)
38 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.6E-35 5.6E-40 217.2 21.6 163 4-167 1-167 (182)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.4E-35 9.6E-40 212.8 22.4 163 3-166 2-164 (166)
40 PLN03108 Rab family protein; P 100.0 1.7E-34 3.7E-39 217.5 25.9 169 3-172 6-174 (210)
41 KOG0095 GTPase Rab30, small G 100.0 6.1E-36 1.3E-40 204.3 16.1 172 2-174 6-177 (213)
42 cd04127 Rab27A Rab27a subfamil 100.0 5.1E-35 1.1E-39 215.2 22.4 166 2-168 3-179 (180)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 5.5E-35 1.2E-39 212.2 21.8 162 4-166 1-167 (168)
44 KOG0093 GTPase Rab3, small G p 100.0 1.7E-35 3.7E-40 201.5 16.4 168 4-172 22-189 (193)
45 cd01874 Cdc42 Cdc42 subfamily. 100.0 6.6E-35 1.4E-39 213.8 21.0 161 3-165 1-174 (175)
46 PLN03071 GTP-binding nuclear p 100.0 1.1E-34 2.3E-39 219.8 21.4 164 1-168 11-174 (219)
47 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.6E-34 5.6E-39 209.8 22.7 163 5-167 2-166 (170)
48 cd01866 Rab2 Rab2 subfamily. 100.0 3.1E-34 6.8E-39 208.9 22.8 164 3-167 4-167 (168)
49 cd01868 Rab11_like Rab11-like. 100.0 3.7E-34 8.1E-39 207.7 22.5 162 3-165 3-164 (165)
50 cd04136 Rap_like Rap-like subf 100.0 1.7E-34 3.6E-39 209.0 20.4 160 4-165 2-162 (163)
51 cd04113 Rab4 Rab4 subfamily. 100.0 2.8E-34 6E-39 207.6 21.5 160 4-164 1-160 (161)
52 KOG0097 GTPase Rab14, small G 100.0 2.4E-34 5.3E-39 195.0 18.6 200 3-203 11-215 (215)
53 cd01864 Rab19 Rab19 subfamily. 100.0 5.6E-34 1.2E-38 206.9 21.9 162 2-164 2-164 (165)
54 cd00877 Ran Ran (Ras-related n 100.0 6.9E-34 1.5E-38 206.8 21.6 160 4-167 1-160 (166)
55 cd04106 Rab23_lke Rab23-like s 100.0 7.5E-34 1.6E-38 205.4 21.6 159 4-164 1-161 (162)
56 cd04175 Rap1 Rap1 subgroup. T 100.0 4.9E-34 1.1E-38 207.0 20.5 161 4-166 2-163 (164)
57 cd04116 Rab9 Rab9 subfamily. 100.0 1E-33 2.2E-38 206.4 21.9 161 2-164 4-169 (170)
58 smart00175 RAB Rab subfamily o 100.0 1.4E-33 3E-38 204.3 22.4 163 4-167 1-163 (164)
59 cd01871 Rac1_like Rac1-like su 100.0 6.4E-34 1.4E-38 208.4 20.8 160 3-164 1-173 (174)
60 cd04134 Rho3 Rho3 subfamily. 100.0 6.6E-34 1.4E-38 211.0 20.9 162 4-167 1-175 (189)
61 cd04124 RabL2 RabL2 subfamily. 100.0 1.9E-33 4.1E-38 203.5 21.9 160 4-168 1-160 (161)
62 PLN03118 Rab family protein; P 100.0 5.8E-33 1.3E-37 209.4 24.6 165 3-169 14-180 (211)
63 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.5E-33 5.3E-38 202.4 21.4 160 3-165 1-161 (162)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 1.6E-33 3.6E-38 204.0 20.4 161 3-165 1-162 (163)
65 KOG0088 GTPase Rab21, small G 100.0 1.1E-34 2.4E-39 199.9 13.3 169 2-171 12-180 (218)
66 smart00173 RAS Ras subfamily o 100.0 1.9E-33 4.1E-38 203.8 20.6 161 4-166 1-162 (164)
67 cd04140 ARHI_like ARHI subfami 100.0 2.7E-33 5.8E-38 203.4 20.9 159 4-164 2-163 (165)
68 cd01861 Rab6 Rab6 subfamily. 100.0 3.8E-33 8.3E-38 201.5 21.6 160 4-164 1-160 (161)
69 smart00176 RAN Ran (Ras-relate 100.0 3.3E-33 7.1E-38 208.3 21.0 156 9-168 1-156 (200)
70 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.4E-33 1.4E-37 202.4 22.1 162 3-165 2-168 (170)
71 cd01860 Rab5_related Rab5-rela 100.0 9.2E-33 2E-37 199.9 22.4 162 3-165 1-162 (163)
72 cd04101 RabL4 RabL4 (Rab-like4 100.0 8.1E-33 1.8E-37 200.4 21.6 160 4-165 1-163 (164)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7.8E-33 1.7E-37 200.4 21.5 161 3-165 2-163 (164)
74 cd01873 RhoBTB RhoBTB subfamil 100.0 4.2E-33 9.1E-38 207.2 20.3 159 3-164 2-194 (195)
75 cd04142 RRP22 RRP22 subfamily. 100.0 6.7E-33 1.4E-37 206.8 20.3 167 4-171 1-179 (198)
76 cd01862 Rab7 Rab7 subfamily. 100.0 3.5E-32 7.6E-37 198.4 22.4 165 4-169 1-170 (172)
77 KOG0081 GTPase Rab27, small G 100.0 2.1E-34 4.5E-39 198.7 9.9 169 3-172 9-187 (219)
78 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.9E-32 4.2E-37 200.4 21.0 159 4-164 1-172 (173)
79 cd04103 Centaurin_gamma Centau 100.0 1.3E-32 2.8E-37 198.4 19.4 154 4-164 1-157 (158)
80 cd04143 Rhes_like Rhes_like su 100.0 2.5E-32 5.5E-37 209.7 22.1 177 4-184 1-187 (247)
81 cd04123 Rab21 Rab21 subfamily. 100.0 4.7E-32 1E-36 195.7 22.2 161 4-165 1-161 (162)
82 smart00174 RHO Rho (Ras homolo 100.0 1.8E-32 4E-37 200.5 19.5 159 6-166 1-172 (174)
83 cd01863 Rab18 Rab18 subfamily. 100.0 5.7E-32 1.2E-36 195.4 21.3 159 4-164 1-160 (161)
84 cd04135 Tc10 TC10 subfamily. 100.0 4.7E-32 1E-36 198.3 20.7 160 4-165 1-173 (174)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 1.1E-31 2.4E-36 195.5 21.1 161 4-166 2-164 (168)
86 cd04148 RGK RGK subfamily. Th 100.0 1.2E-31 2.7E-36 203.3 21.6 165 4-171 1-168 (221)
87 cd00154 Rab Rab family. Rab G 100.0 2E-31 4.3E-36 191.2 21.1 159 4-163 1-159 (159)
88 cd01892 Miro2 Miro2 subfamily. 100.0 6.3E-32 1.4E-36 197.0 18.4 161 3-166 4-166 (169)
89 cd04146 RERG_RasL11_like RERG/ 100.0 8.7E-32 1.9E-36 195.4 18.6 160 5-166 1-164 (165)
90 cd04114 Rab30 Rab30 subfamily. 100.0 5.9E-31 1.3E-35 191.6 22.8 162 3-165 7-168 (169)
91 cd04147 Ras_dva Ras-dva subfam 100.0 4.2E-31 9.1E-36 197.4 20.9 162 5-167 1-164 (198)
92 cd04129 Rho2 Rho2 subfamily. 100.0 6.2E-31 1.4E-35 194.8 21.5 164 4-169 2-176 (187)
93 cd04139 RalA_RalB RalA/RalB su 100.0 1.3E-30 2.9E-35 188.5 21.4 162 4-167 1-163 (164)
94 KOG0393 Ras-related small GTPa 100.0 5.6E-32 1.2E-36 196.6 13.5 168 1-170 2-183 (198)
95 cd01870 RhoA_like RhoA-like su 100.0 1.3E-30 2.9E-35 190.8 21.0 161 3-165 1-174 (175)
96 cd04149 Arf6 Arf6 subfamily. 100.0 3.7E-31 8.1E-36 192.7 17.0 154 2-163 8-167 (168)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.3E-30 2.9E-35 192.4 19.6 169 2-174 2-178 (183)
98 cd00876 Ras Ras family. The R 100.0 1.9E-30 4.1E-35 186.9 19.9 158 5-164 1-159 (160)
99 PLN00223 ADP-ribosylation fact 100.0 9.5E-31 2.1E-35 192.7 18.7 159 2-168 16-180 (181)
100 KOG0395 Ras-related GTPase [Ge 100.0 1.9E-30 4.1E-35 192.2 19.2 167 2-170 2-169 (196)
101 cd04137 RheB Rheb (Ras Homolog 100.0 7E-30 1.5E-34 187.9 22.2 164 4-169 2-166 (180)
102 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.5E-32 3.2E-37 184.4 6.7 160 8-168 2-162 (192)
103 cd04158 ARD1 ARD1 subfamily. 100.0 2.2E-30 4.8E-35 188.8 17.8 156 5-168 1-163 (169)
104 smart00177 ARF ARF-like small 100.0 3.4E-30 7.3E-35 188.9 18.6 156 2-165 12-173 (175)
105 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.2E-30 4.8E-35 187.0 17.4 152 4-163 1-158 (159)
106 cd00157 Rho Rho (Ras homology) 100.0 1.4E-29 3E-34 184.5 20.4 158 4-163 1-170 (171)
107 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.4E-29 5.1E-34 187.5 20.9 149 4-153 1-177 (202)
108 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 9.8E-31 2.1E-35 189.8 12.9 152 6-163 2-163 (164)
109 PTZ00132 GTP-binding nuclear p 100.0 4E-29 8.7E-34 189.0 22.1 164 1-168 7-170 (215)
110 PTZ00133 ADP-ribosylation fact 100.0 1.4E-29 3E-34 186.7 19.0 158 3-168 17-180 (182)
111 cd01893 Miro1 Miro1 subfamily. 100.0 2.7E-29 5.9E-34 182.5 19.3 161 4-167 1-165 (166)
112 cd04154 Arl2 Arl2 subfamily. 100.0 2.3E-29 4.9E-34 184.1 18.1 154 2-163 13-172 (173)
113 PTZ00099 rab6; Provisional 100.0 7.7E-29 1.7E-33 181.5 20.2 143 26-169 3-145 (176)
114 cd04157 Arl6 Arl6 subfamily. 100.0 9.1E-30 2E-34 183.9 14.2 152 5-163 1-161 (162)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.4E-28 3E-33 180.2 17.2 154 2-163 14-173 (174)
116 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.1E-28 2.4E-33 179.5 15.0 151 5-163 1-166 (167)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.8E-28 3.8E-33 177.0 14.6 152 5-163 1-159 (160)
118 cd04151 Arl1 Arl1 subfamily. 100.0 1.5E-28 3.3E-33 177.1 13.5 151 5-163 1-157 (158)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 5E-28 1.1E-32 175.8 16.2 152 5-163 1-166 (167)
120 cd00879 Sar1 Sar1 subfamily. 100.0 1E-27 2.2E-32 177.8 18.0 155 2-164 18-189 (190)
121 PLN00023 GTP-binding protein; 100.0 5.7E-27 1.2E-31 183.1 22.2 139 2-140 20-188 (334)
122 PF00025 Arf: ADP-ribosylation 100.0 2.2E-27 4.8E-32 173.9 18.1 156 2-165 13-175 (175)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.2E-27 2.6E-32 172.3 15.6 151 5-163 1-157 (158)
124 smart00178 SAR Sar1p-like memb 100.0 5.1E-27 1.1E-31 173.3 17.4 154 3-164 17-183 (184)
125 KOG4252 GTP-binding protein [S 100.0 7.3E-29 1.6E-33 174.5 5.9 167 3-171 20-186 (246)
126 cd04159 Arl10_like Arl10-like 100.0 4.3E-27 9.3E-32 168.7 14.1 151 6-163 2-158 (159)
127 KOG0073 GTP-binding ADP-ribosy 99.9 5E-26 1.1E-30 157.9 17.3 158 3-168 16-180 (185)
128 cd01890 LepA LepA subfamily. 99.9 7.7E-26 1.7E-30 166.1 16.9 154 5-165 2-176 (179)
129 TIGR00231 small_GTP small GTP- 99.9 2.3E-25 4.9E-30 159.3 18.5 158 3-162 1-160 (161)
130 COG1100 GTPase SAR1 and relate 99.9 6E-25 1.3E-29 166.4 20.7 170 1-170 3-189 (219)
131 cd04155 Arl3 Arl3 subfamily. 99.9 2.6E-25 5.7E-30 162.4 17.7 151 2-163 13-172 (173)
132 cd01897 NOG NOG1 is a nucleola 99.9 1.4E-25 3E-30 163.1 16.0 155 5-165 2-167 (168)
133 KOG0070 GTP-binding ADP-ribosy 99.9 9.7E-26 2.1E-30 160.2 12.5 159 2-168 16-180 (181)
134 cd01898 Obg Obg subfamily. Th 99.9 3E-25 6.5E-30 161.5 15.5 157 5-164 2-169 (170)
135 PRK12299 obgE GTPase CgtA; Rev 99.9 8.4E-25 1.8E-29 174.3 18.7 163 4-168 159-330 (335)
136 cd04171 SelB SelB subfamily. 99.9 6.4E-25 1.4E-29 158.7 16.2 153 4-163 1-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.9 2.4E-25 5.2E-30 157.6 12.9 134 5-162 2-141 (142)
138 cd01878 HflX HflX subfamily. 99.9 7.2E-25 1.6E-29 164.4 15.8 154 3-164 41-203 (204)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.3E-24 5E-29 156.5 15.2 155 5-166 2-166 (168)
140 cd00882 Ras_like_GTPase Ras-li 99.9 9E-24 2E-28 149.6 17.7 153 8-162 1-156 (157)
141 cd01891 TypA_BipA TypA (tyrosi 99.9 1.6E-24 3.4E-29 161.4 13.5 150 4-157 3-173 (194)
142 PRK04213 GTP-binding protein; 99.9 8.5E-25 1.8E-29 163.6 11.4 154 3-170 9-196 (201)
143 KOG0075 GTP-binding ADP-ribosy 99.9 5.4E-25 1.2E-29 150.2 8.2 159 2-167 19-183 (186)
144 cd01879 FeoB Ferrous iron tran 99.9 1.8E-23 4E-28 150.2 15.6 148 8-165 1-156 (158)
145 TIGR02729 Obg_CgtA Obg family 99.9 3E-23 6.5E-28 165.2 17.3 159 4-165 158-328 (329)
146 TIGR03156 GTP_HflX GTP-binding 99.9 3.8E-23 8.3E-28 166.0 17.2 152 4-164 190-350 (351)
147 PF08477 Miro: Miro-like prote 99.9 1.8E-23 4E-28 143.6 12.4 114 5-119 1-119 (119)
148 PRK03003 GTP-binding protein D 99.9 4.6E-23 1E-27 172.2 17.2 178 4-192 39-225 (472)
149 KOG0071 GTP-binding ADP-ribosy 99.9 1.7E-23 3.6E-28 141.8 11.6 156 3-166 17-178 (180)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.6E-22 3.4E-27 166.8 18.5 152 3-169 203-363 (442)
151 KOG3883 Ras family small GTPas 99.9 3.3E-22 7.3E-27 137.5 16.0 165 3-169 9-178 (198)
152 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.2E-22 4.8E-27 144.2 16.0 146 4-165 2-156 (157)
153 KOG1673 Ras GTPases [General f 99.9 4.2E-23 9.1E-28 142.3 11.4 164 3-167 20-187 (205)
154 PF02421 FeoB_N: Ferrous iron 99.9 6.7E-23 1.5E-27 145.6 12.5 148 4-161 1-156 (156)
155 cd01881 Obg_like The Obg-like 99.9 7.3E-23 1.6E-27 149.6 13.0 155 8-164 1-175 (176)
156 PRK03003 GTP-binding protein D 99.9 1.1E-22 2.5E-27 169.8 15.9 162 3-170 211-386 (472)
157 cd00881 GTP_translation_factor 99.9 1.7E-22 3.7E-27 149.2 14.6 155 5-165 1-186 (189)
158 PRK12297 obgE GTPase CgtA; Rev 99.9 7.1E-22 1.5E-26 161.3 19.2 161 4-170 159-331 (424)
159 PRK15467 ethanolamine utilizat 99.9 1.7E-22 3.7E-27 145.6 13.5 141 5-169 3-150 (158)
160 cd01889 SelB_euk SelB subfamil 99.9 2.1E-22 4.5E-27 149.7 14.2 159 4-166 1-186 (192)
161 PRK05291 trmE tRNA modificatio 99.9 2.5E-22 5.4E-27 166.4 15.7 148 3-167 215-371 (449)
162 TIGR00436 era GTP-binding prot 99.9 5.8E-22 1.2E-26 154.7 16.2 153 5-167 2-165 (270)
163 TIGR01393 lepA GTP-binding pro 99.9 6.4E-22 1.4E-26 168.5 17.7 157 3-166 3-180 (595)
164 PRK12296 obgE GTPase CgtA; Rev 99.9 1.1E-21 2.5E-26 162.1 18.3 165 3-171 159-345 (500)
165 PRK11058 GTPase HflX; Provisio 99.9 1E-21 2.3E-26 161.1 17.5 158 4-168 198-364 (426)
166 cd01894 EngA1 EngA1 subfamily. 99.9 5.2E-22 1.1E-26 142.3 13.4 145 7-164 1-156 (157)
167 PRK15494 era GTPase Era; Provi 99.9 1.5E-21 3.2E-26 156.5 17.3 156 3-169 52-219 (339)
168 TIGR00487 IF-2 translation ini 99.9 1.3E-21 2.9E-26 165.9 17.7 149 3-163 87-247 (587)
169 cd01895 EngA2 EngA2 subfamily. 99.9 3E-21 6.5E-26 140.4 16.1 155 3-164 2-173 (174)
170 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 2.1E-22 4.5E-27 143.2 9.1 164 3-170 10-173 (216)
171 TIGR03594 GTPase_EngA ribosome 99.9 3.9E-21 8.4E-26 159.3 17.8 159 3-169 172-347 (429)
172 KOG0076 GTP-binding ADP-ribosy 99.9 3.7E-22 8.1E-27 140.0 9.5 159 3-168 17-189 (197)
173 TIGR00475 selB selenocysteine- 99.9 4.5E-21 9.8E-26 163.1 17.9 156 4-168 1-168 (581)
174 cd04105 SR_beta Signal recogni 99.9 7.3E-21 1.6E-25 142.4 16.9 117 5-122 2-123 (203)
175 PRK05306 infB translation init 99.9 3.3E-21 7.2E-26 167.2 16.4 153 3-164 290-450 (787)
176 CHL00189 infB translation init 99.9 2.6E-21 5.7E-26 166.5 15.6 156 3-165 244-409 (742)
177 cd01888 eIF2_gamma eIF2-gamma 99.9 3.1E-21 6.8E-26 144.5 13.6 156 4-165 1-198 (203)
178 PRK00454 engB GTP-binding prot 99.9 6.4E-21 1.4E-25 141.9 15.0 158 3-167 24-195 (196)
179 PRK00093 GTP-binding protein D 99.9 8.3E-21 1.8E-25 157.6 16.7 174 4-192 2-187 (435)
180 TIGR03594 GTPase_EngA ribosome 99.9 6.4E-21 1.4E-25 158.0 15.7 175 5-191 1-185 (429)
181 TIGR03598 GTPase_YsxC ribosome 99.9 5E-21 1.1E-25 140.8 13.3 146 3-155 18-179 (179)
182 PRK12298 obgE GTPase CgtA; Rev 99.9 1.9E-20 4.1E-25 152.1 17.8 164 4-170 160-337 (390)
183 cd04163 Era Era subfamily. Er 99.9 1.5E-20 3.2E-25 135.6 15.2 156 1-164 1-167 (168)
184 TIGR00437 feoB ferrous iron tr 99.9 1.9E-20 4.1E-25 159.5 16.1 146 10-165 1-154 (591)
185 COG2229 Predicted GTPase [Gene 99.9 8.7E-20 1.9E-24 129.8 15.9 155 1-164 8-176 (187)
186 PRK05433 GTP-binding protein L 99.8 4.1E-20 8.9E-25 157.6 15.9 157 4-167 8-185 (600)
187 PRK09518 bifunctional cytidyla 99.8 1.3E-19 2.7E-24 158.1 18.6 178 4-192 276-464 (712)
188 PRK00089 era GTPase Era; Revie 99.8 1.3E-19 2.9E-24 143.0 17.0 158 3-167 5-172 (292)
189 PRK09554 feoB ferrous iron tra 99.8 1.7E-19 3.6E-24 157.2 19.0 155 1-165 1-167 (772)
190 KOG4423 GTP-binding protein-li 99.8 1.1E-22 2.4E-27 144.2 -0.8 184 3-186 25-214 (229)
191 KOG1707 Predicted Ras related/ 99.8 9.6E-21 2.1E-25 155.0 10.1 164 2-167 8-176 (625)
192 TIGR00491 aIF-2 translation in 99.8 9.8E-20 2.1E-24 154.4 16.6 157 4-167 5-217 (590)
193 COG1160 Predicted GTPases [Gen 99.8 4.8E-20 1E-24 148.1 13.8 182 1-195 1-195 (444)
194 PRK00093 GTP-binding protein D 99.8 3.5E-19 7.5E-24 147.9 19.5 160 3-170 173-348 (435)
195 PRK09518 bifunctional cytidyla 99.8 9.7E-20 2.1E-24 158.8 16.8 159 3-170 450-625 (712)
196 cd00880 Era_like Era (E. coli 99.8 4.8E-20 1E-24 131.7 12.3 152 8-164 1-162 (163)
197 PF00009 GTP_EFTU: Elongation 99.8 3.1E-20 6.7E-25 137.6 11.6 160 2-165 2-186 (188)
198 KOG0074 GTP-binding ADP-ribosy 99.8 3.3E-20 7.1E-25 126.1 10.3 156 2-164 16-177 (185)
199 TIGR00483 EF-1_alpha translati 99.8 1.2E-19 2.6E-24 150.1 14.3 153 2-158 6-199 (426)
200 PRK10218 GTP-binding protein; 99.8 5.8E-19 1.3E-23 150.1 17.7 160 3-166 5-195 (607)
201 cd01896 DRG The developmentall 99.8 1.8E-18 3.8E-23 132.1 17.9 151 5-165 2-225 (233)
202 TIGR01394 TypA_BipA GTP-bindin 99.8 3.8E-19 8.3E-24 151.3 15.1 158 5-166 3-191 (594)
203 KOG0072 GTP-binding ADP-ribosy 99.8 4.7E-20 1E-24 125.7 7.2 158 3-168 18-181 (182)
204 PRK12317 elongation factor 1-a 99.8 5.1E-19 1.1E-23 146.4 13.6 154 2-159 5-198 (425)
205 cd01876 YihA_EngB The YihA (En 99.8 1.4E-18 3.1E-23 125.6 14.3 151 5-164 1-169 (170)
206 COG0486 ThdF Predicted GTPase 99.8 1.9E-18 4.1E-23 139.4 15.8 152 4-168 218-378 (454)
207 COG1159 Era GTPase [General fu 99.8 3.1E-18 6.7E-23 131.0 15.2 160 2-168 5-174 (298)
208 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.8E-18 3.8E-23 130.1 13.2 148 5-157 1-185 (208)
209 PRK04004 translation initiatio 99.8 4E-18 8.6E-23 145.0 16.7 157 3-167 6-219 (586)
210 COG1160 Predicted GTPases [Gen 99.8 5.4E-18 1.2E-22 136.4 16.1 164 2-172 177-357 (444)
211 PF10662 PduV-EutP: Ethanolami 99.8 2.7E-18 5.8E-23 119.5 12.5 135 5-162 3-142 (143)
212 cd04168 TetM_like Tet(M)-like 99.8 6.4E-18 1.4E-22 129.2 15.3 114 5-122 1-130 (237)
213 TIGR03680 eif2g_arch translati 99.8 2.2E-18 4.7E-23 141.6 13.4 164 1-166 2-196 (406)
214 PRK10512 selenocysteinyl-tRNA- 99.8 1.3E-17 2.8E-22 142.7 17.2 155 5-167 2-167 (614)
215 cd01883 EF1_alpha Eukaryotic e 99.8 2.8E-18 6E-23 130.0 11.5 147 5-155 1-194 (219)
216 PRK04000 translation initiatio 99.8 7.5E-18 1.6E-22 138.4 13.1 158 3-166 9-201 (411)
217 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.1E-17 6.6E-22 121.9 14.9 147 3-155 2-172 (195)
218 cd04167 Snu114p Snu114p subfam 99.8 4.3E-17 9.4E-22 123.0 15.0 113 5-121 2-136 (213)
219 COG0370 FeoB Fe2+ transport sy 99.7 8.6E-17 1.9E-21 135.0 15.1 159 1-169 1-167 (653)
220 KOG1489 Predicted GTP-binding 99.7 5E-17 1.1E-21 124.9 12.1 154 4-164 197-365 (366)
221 COG0532 InfB Translation initi 99.7 3E-16 6.6E-21 128.4 16.4 158 4-168 6-172 (509)
222 PRK12735 elongation factor Tu; 99.7 1.4E-16 3E-21 130.5 14.6 156 3-164 12-201 (396)
223 cd04104 p47_IIGP_like p47 (47- 99.7 3.2E-16 7E-21 116.9 14.9 160 3-170 1-188 (197)
224 PRK12736 elongation factor Tu; 99.7 1.9E-16 4.1E-21 129.7 14.8 158 2-165 11-200 (394)
225 cd04169 RF3 RF3 subfamily. Pe 99.7 3.3E-16 7.2E-21 121.7 15.3 115 4-122 3-137 (267)
226 COG2262 HflX GTPases [General 99.7 4.8E-16 1E-20 123.6 16.3 159 3-169 192-359 (411)
227 COG0218 Predicted GTPase [Gene 99.7 3.5E-16 7.5E-21 113.8 14.0 155 4-167 25-198 (200)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.5E-17 1.6E-21 122.0 10.0 167 5-176 1-186 (232)
229 cd01850 CDC_Septin CDC/Septin. 99.7 2.4E-16 5.3E-21 123.0 13.0 145 2-150 3-186 (276)
230 cd04165 GTPBP1_like GTPBP1-lik 99.7 1E-15 2.2E-20 116.1 15.9 152 5-162 1-219 (224)
231 COG1084 Predicted GTPase [Gene 99.7 9.7E-16 2.1E-20 118.6 15.9 159 4-169 169-339 (346)
232 cd01885 EF2 EF2 (for archaea a 99.7 2.6E-16 5.7E-21 118.9 12.6 123 5-131 2-148 (222)
233 TIGR00485 EF-Tu translation el 99.7 4.2E-16 9.1E-21 127.8 14.4 142 2-152 11-179 (394)
234 KOG0077 Vesicle coat complex C 99.7 6.3E-17 1.4E-21 113.0 8.1 154 3-164 20-191 (193)
235 PLN00043 elongation factor 1-a 99.7 4.4E-16 9.4E-21 129.0 12.2 148 3-156 7-203 (447)
236 KOG1423 Ras-like GTPase ERA [C 99.7 1.5E-15 3.2E-20 116.4 13.6 166 3-173 72-278 (379)
237 CHL00071 tufA elongation facto 99.7 1.5E-15 3.3E-20 124.9 14.6 147 2-154 11-181 (409)
238 cd04170 EF-G_bact Elongation f 99.7 5.5E-16 1.2E-20 120.9 11.1 142 5-155 1-162 (268)
239 cd01886 EF-G Elongation factor 99.7 1.7E-15 3.7E-20 117.8 13.7 113 5-123 1-131 (270)
240 PRK00741 prfC peptide chain re 99.7 1.7E-15 3.7E-20 127.6 14.6 116 3-122 10-145 (526)
241 PRK05124 cysN sulfate adenylyl 99.7 1.4E-15 3.1E-20 126.9 14.0 152 2-158 26-217 (474)
242 PRK13351 elongation factor G; 99.7 9E-16 1.9E-20 133.9 13.1 112 3-122 8-139 (687)
243 TIGR00503 prfC peptide chain r 99.7 3.3E-15 7.2E-20 125.9 15.4 115 3-121 11-145 (527)
244 KOG0462 Elongation factor-type 99.7 1.4E-15 3.1E-20 124.2 12.7 160 4-167 61-236 (650)
245 TIGR02034 CysN sulfate adenyly 99.7 2.1E-15 4.5E-20 124.0 13.7 148 4-156 1-187 (406)
246 COG0536 Obg Predicted GTPase [ 99.7 2.6E-15 5.7E-20 116.7 13.4 164 5-170 161-337 (369)
247 PLN03126 Elongation factor Tu; 99.7 7.7E-15 1.7E-19 122.2 16.6 146 2-153 80-249 (478)
248 cd01899 Ygr210 Ygr210 subfamil 99.7 8.8E-15 1.9E-19 116.0 15.9 81 6-86 1-110 (318)
249 KOG1145 Mitochondrial translat 99.6 9.3E-15 2E-19 119.6 15.4 157 5-169 155-319 (683)
250 PTZ00141 elongation factor 1- 99.6 2.8E-15 6E-20 124.3 12.5 149 3-156 7-203 (446)
251 PRK00049 elongation factor Tu; 99.6 1.2E-14 2.5E-19 119.2 15.5 157 2-164 11-201 (396)
252 PF01926 MMR_HSR1: 50S ribosom 99.6 1.3E-14 2.8E-19 99.1 12.8 105 5-117 1-116 (116)
253 PRK05506 bifunctional sulfate 99.6 5.7E-15 1.2E-19 127.7 12.6 150 2-156 23-211 (632)
254 COG0481 LepA Membrane GTPase L 99.6 9.7E-15 2.1E-19 117.7 12.2 157 4-167 10-187 (603)
255 PF09439 SRPRB: Signal recogni 99.6 2.7E-15 5.9E-20 109.0 8.2 115 4-122 4-126 (181)
256 PLN03127 Elongation factor Tu; 99.6 2.5E-14 5.4E-19 118.5 14.4 158 2-165 60-251 (447)
257 COG1163 DRG Predicted GTPase [ 99.6 5.1E-14 1.1E-18 108.9 15.0 153 4-166 64-289 (365)
258 KOG1191 Mitochondrial GTPase [ 99.6 1.3E-14 2.7E-19 117.5 11.2 165 3-170 268-454 (531)
259 PTZ00327 eukaryotic translatio 99.6 1.8E-14 3.8E-19 119.4 12.0 162 3-166 34-233 (460)
260 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 9.8E-14 2.1E-18 103.4 15.0 161 4-168 1-186 (196)
261 PRK12739 elongation factor G; 99.6 2.4E-13 5.2E-18 118.6 18.0 114 3-122 8-139 (691)
262 TIGR00484 EF-G translation elo 99.6 8.3E-14 1.8E-18 121.6 14.1 115 3-123 10-142 (689)
263 PRK09602 translation-associate 99.6 2.9E-13 6.3E-18 110.5 15.8 83 4-86 2-113 (396)
264 PRK12740 elongation factor G; 99.5 1.4E-13 3.1E-18 119.9 13.4 108 9-122 1-126 (668)
265 smart00010 small_GTPase Small 99.5 1.4E-13 3.1E-18 94.6 10.7 114 4-155 1-115 (124)
266 KOG0090 Signal recognition par 99.5 3.4E-13 7.3E-18 98.5 12.7 154 5-164 40-237 (238)
267 PRK00007 elongation factor G; 99.5 5.4E-13 1.2E-17 116.4 16.0 114 3-122 10-141 (693)
268 cd00066 G-alpha G protein alph 99.5 1.2E-12 2.6E-17 104.3 16.5 119 51-169 160-314 (317)
269 COG5256 TEF1 Translation elong 99.5 1.2E-13 2.7E-18 110.0 10.5 150 3-156 7-201 (428)
270 PRK14845 translation initiatio 99.5 6E-13 1.3E-17 118.7 15.9 146 14-167 472-674 (1049)
271 TIGR00490 aEF-2 translation el 99.5 2.8E-13 6.1E-18 118.6 12.3 126 3-132 19-162 (720)
272 smart00275 G_alpha G protein a 99.5 2.3E-12 5E-17 103.5 16.6 118 52-169 184-337 (342)
273 KOG1490 GTP-binding protein CR 99.5 8.4E-14 1.8E-18 113.0 8.2 171 5-179 170-354 (620)
274 COG3596 Predicted GTPase [Gene 99.5 4.4E-13 9.5E-18 101.8 11.2 164 2-170 38-226 (296)
275 PRK09866 hypothetical protein; 99.5 3.3E-12 7.2E-17 107.6 17.0 108 53-163 231-350 (741)
276 KOG3905 Dynein light intermedi 99.5 2.4E-12 5.3E-17 99.7 13.2 162 4-168 53-292 (473)
277 TIGR00157 ribosome small subun 99.5 4.5E-13 9.7E-18 103.0 9.1 96 63-163 24-120 (245)
278 COG4917 EutP Ethanolamine util 99.4 9.9E-13 2.1E-17 88.1 8.7 136 5-163 3-143 (148)
279 TIGR00101 ureG urease accessor 99.4 4.8E-12 1E-16 94.3 13.3 100 53-166 93-196 (199)
280 PRK13768 GTPase; Provisional 99.4 1.2E-12 2.7E-17 101.1 10.2 110 53-166 98-247 (253)
281 PF05783 DLIC: Dynein light in 99.4 5.9E-12 1.3E-16 104.3 14.2 161 5-168 27-266 (472)
282 COG2895 CysN GTPases - Sulfate 99.4 5.5E-12 1.2E-16 98.7 12.2 149 2-155 5-192 (431)
283 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.5E-11 3.2E-16 96.3 14.4 118 2-122 37-167 (313)
284 cd01853 Toc34_like Toc34-like 99.4 2.6E-11 5.6E-16 93.3 15.2 117 3-122 31-163 (249)
285 PTZ00258 GTP-binding protein; 99.4 1.7E-11 3.7E-16 99.4 13.5 84 3-86 21-126 (390)
286 KOG1707 Predicted Ras related/ 99.4 2.5E-11 5.3E-16 100.4 14.4 158 4-167 426-584 (625)
287 KOG1532 GTPase XAB1, interacts 99.4 6.2E-12 1.3E-16 95.4 9.9 118 52-171 116-269 (366)
288 PRK07560 elongation factor EF- 99.4 1.1E-11 2.5E-16 108.8 12.5 118 4-125 21-156 (731)
289 PRK09601 GTP-binding protein Y 99.3 4E-11 8.6E-16 96.2 14.4 84 3-86 2-107 (364)
290 PF03029 ATP_bind_1: Conserved 99.3 1.1E-12 2.5E-17 100.2 5.4 112 53-166 92-237 (238)
291 COG1217 TypA Predicted membran 99.3 2.1E-11 4.6E-16 98.5 12.5 160 2-167 4-196 (603)
292 PF04548 AIG1: AIG1 family; I 99.3 1E-10 2.2E-15 88.2 14.8 162 4-169 1-189 (212)
293 PLN00116 translation elongatio 99.3 2.7E-11 5.8E-16 107.8 13.1 116 3-122 19-164 (843)
294 KOG0082 G-protein alpha subuni 99.3 2.3E-10 5.1E-15 90.8 16.1 135 33-171 180-349 (354)
295 PTZ00416 elongation factor 2; 99.3 4.1E-11 8.9E-16 106.5 13.1 115 3-121 19-157 (836)
296 KOG3886 GTP-binding protein [S 99.3 7.7E-12 1.7E-16 92.6 6.7 147 3-151 4-164 (295)
297 KOG1144 Translation initiation 99.3 5.6E-11 1.2E-15 100.6 12.2 160 6-172 478-693 (1064)
298 TIGR00073 hypB hydrogenase acc 99.3 3.5E-11 7.6E-16 90.4 9.9 55 109-164 149-205 (207)
299 cd01882 BMS1 Bms1. Bms1 is an 99.3 7.1E-11 1.5E-15 89.8 11.4 138 3-152 39-182 (225)
300 PRK09435 membrane ATPase/prote 99.3 9.2E-11 2E-15 93.4 12.3 107 51-168 148-262 (332)
301 COG0378 HypB Ni2+-binding GTPa 99.2 2E-10 4.3E-15 83.4 10.8 79 78-165 120-200 (202)
302 cd01900 YchF YchF subfamily. 99.2 2.1E-10 4.6E-15 89.2 11.2 80 6-85 1-102 (274)
303 KOG0458 Elongation factor 1 al 99.2 2.7E-10 6E-15 94.3 12.1 150 3-155 177-371 (603)
304 PF05049 IIGP: Interferon-indu 99.2 1.8E-10 3.9E-15 92.6 10.0 158 3-172 35-224 (376)
305 PF00735 Septin: Septin; Inte 99.2 1.5E-09 3.2E-14 85.0 14.6 141 2-147 3-182 (281)
306 TIGR02836 spore_IV_A stage IV 99.2 1.3E-09 2.8E-14 88.0 14.4 154 3-162 17-233 (492)
307 KOG0461 Selenocysteine-specifi 99.2 8.4E-10 1.8E-14 86.5 12.9 159 3-168 7-195 (522)
308 COG5257 GCD11 Translation init 99.2 1.7E-10 3.7E-15 89.4 8.3 185 3-189 10-228 (415)
309 COG0480 FusA Translation elong 99.1 5.6E-10 1.2E-14 96.5 11.7 129 2-135 9-155 (697)
310 TIGR00750 lao LAO/AO transport 99.1 3.6E-10 7.8E-15 89.6 9.7 105 51-166 126-238 (300)
311 KOG0705 GTPase-activating prot 99.1 3.6E-10 7.8E-15 93.0 9.1 162 4-172 31-195 (749)
312 cd01855 YqeH YqeH. YqeH is an 99.1 9.8E-10 2.1E-14 81.4 10.4 94 65-166 24-125 (190)
313 KOG0410 Predicted GTP binding 99.1 2E-10 4.3E-15 89.2 6.7 150 6-168 181-343 (410)
314 COG3276 SelB Selenocysteine-sp 99.1 1.9E-09 4.1E-14 87.0 12.5 152 5-166 2-162 (447)
315 PF00350 Dynamin_N: Dynamin fa 99.1 6.7E-10 1.4E-14 80.5 8.8 63 53-118 102-168 (168)
316 TIGR00993 3a0901s04IAP86 chlor 99.1 3.8E-09 8.1E-14 89.8 13.9 116 3-122 118-250 (763)
317 PRK10463 hydrogenase nickel in 99.0 9.6E-10 2.1E-14 85.6 8.2 55 109-164 231-287 (290)
318 smart00053 DYNc Dynamin, GTPas 99.0 4.4E-09 9.6E-14 80.3 11.5 68 52-122 125-206 (240)
319 COG0012 Predicted GTPase, prob 99.0 7.8E-09 1.7E-13 82.3 12.6 84 3-86 2-108 (372)
320 cd01859 MJ1464 MJ1464. This f 99.0 3.5E-09 7.7E-14 75.9 9.1 95 65-166 2-96 (156)
321 COG5019 CDC3 Septin family pro 99.0 3.2E-08 7E-13 78.4 14.0 139 2-145 22-200 (373)
322 COG4108 PrfC Peptide chain rel 99.0 6E-09 1.3E-13 84.0 9.9 129 5-142 14-164 (528)
323 PRK12288 GTPase RsgA; Reviewed 99.0 5.2E-09 1.1E-13 84.2 9.5 88 73-163 118-205 (347)
324 cd01854 YjeQ_engC YjeQ/EngC. 99.0 4.4E-09 9.4E-14 82.9 8.9 88 70-163 73-161 (287)
325 KOG0468 U5 snRNP-specific prot 98.9 3E-09 6.6E-14 89.5 7.7 114 3-120 128-261 (971)
326 PRK12289 GTPase RsgA; Reviewed 98.9 8.3E-09 1.8E-13 83.1 9.9 91 67-163 81-172 (352)
327 KOG3887 Predicted small GTPase 98.9 9E-09 2E-13 77.1 9.3 164 4-172 28-208 (347)
328 COG0050 TufB GTPases - transla 98.9 2.2E-08 4.8E-13 77.1 10.7 138 4-150 13-177 (394)
329 PRK00098 GTPase RsgA; Reviewed 98.9 8.6E-09 1.9E-13 81.6 8.3 86 72-162 77-163 (298)
330 KOG1547 Septin CDC10 and relat 98.9 8E-08 1.7E-12 72.0 12.4 146 2-152 45-229 (336)
331 PF03308 ArgK: ArgK protein; 98.9 3E-09 6.5E-14 80.9 4.9 104 52-168 122-232 (266)
332 KOG1486 GTP-binding protein DR 98.9 1.8E-07 4E-12 70.6 14.1 85 4-90 63-154 (364)
333 TIGR03597 GTPase_YqeH ribosome 98.9 1.9E-08 4.2E-13 81.6 9.6 95 62-164 50-151 (360)
334 KOG2655 Septin family protein 98.8 1E-07 2.2E-12 76.0 12.9 146 2-151 20-202 (366)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.5E-08 3.1E-13 71.6 6.1 54 5-62 85-138 (141)
336 COG1703 ArgK Putative periplas 98.8 4.1E-08 8.8E-13 75.9 8.3 107 52-171 144-259 (323)
337 cd01849 YlqF_related_GTPase Yl 98.7 1.2E-07 2.6E-12 68.0 7.9 85 77-166 1-85 (155)
338 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.7E-07 3.7E-12 67.3 7.8 91 72-166 5-95 (157)
339 cd04178 Nucleostemin_like Nucl 98.6 1.2E-07 2.6E-12 69.0 6.6 55 3-61 117-171 (172)
340 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.6E-07 3.4E-12 67.4 6.9 54 3-61 102-156 (157)
341 KOG2486 Predicted GTPase [Gene 98.6 1.7E-07 3.8E-12 71.7 7.1 154 3-164 136-314 (320)
342 cd01859 MJ1464 MJ1464. This f 98.6 2E-07 4.2E-12 66.8 7.0 55 3-61 101-155 (156)
343 KOG0099 G protein subunit Galp 98.6 4.4E-07 9.5E-12 69.0 8.9 120 51-170 201-373 (379)
344 COG5258 GTPBP1 GTPase [General 98.6 5.8E-07 1.3E-11 71.8 9.8 156 3-162 117-335 (527)
345 cd01856 YlqF YlqF. Proteins o 98.6 4E-07 8.7E-12 66.3 8.2 100 59-167 2-102 (171)
346 cd01856 YlqF YlqF. Proteins o 98.6 2E-07 4.3E-12 67.9 6.6 55 4-62 116-170 (171)
347 KOG1143 Predicted translation 98.5 2.4E-07 5.3E-12 73.7 6.8 152 3-158 167-380 (591)
348 COG1618 Predicted nucleotide k 98.5 1.2E-05 2.7E-10 56.9 14.3 147 2-166 4-176 (179)
349 TIGR03596 GTPase_YlqF ribosome 98.5 7.5E-07 1.6E-11 69.9 9.0 102 59-169 4-106 (276)
350 PRK09563 rbgA GTPase YlqF; Rev 98.5 5.2E-07 1.1E-11 71.2 7.7 56 3-63 121-177 (287)
351 COG1161 Predicted GTPases [Gen 98.5 3.2E-07 7E-12 73.4 6.4 57 3-63 132-188 (322)
352 TIGR03596 GTPase_YlqF ribosome 98.5 4.5E-07 9.8E-12 71.1 7.1 55 3-62 118-173 (276)
353 KOG0460 Mitochondrial translat 98.5 8.2E-07 1.8E-11 69.8 8.2 140 4-149 55-218 (449)
354 TIGR00092 GTP-binding protein 98.5 6.4E-07 1.4E-11 72.3 7.8 84 3-86 2-108 (368)
355 KOG0085 G protein subunit Galp 98.5 4E-07 8.8E-12 68.0 5.8 120 50-169 197-352 (359)
356 PRK13796 GTPase YqeH; Provisio 98.5 1.9E-06 4.2E-11 70.2 10.2 93 64-164 58-157 (365)
357 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.3E-06 2.9E-11 68.9 8.6 125 59-192 7-135 (287)
358 KOG1491 Predicted GTP-binding 98.4 1E-06 2.2E-11 69.3 7.5 84 3-86 20-125 (391)
359 KOG0448 Mitofusin 1 GTPase, in 98.4 1.1E-05 2.3E-10 68.9 13.3 92 54-150 208-310 (749)
360 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1.2E-06 2.7E-11 61.7 6.8 79 70-153 6-84 (141)
361 KOG1954 Endocytosis/signaling 98.4 3E-06 6.4E-11 67.5 9.3 113 5-122 60-225 (532)
362 cd01851 GBP Guanylate-binding 98.4 6.3E-06 1.4E-10 62.7 10.6 84 4-88 8-104 (224)
363 KOG4273 Uncharacterized conser 98.4 6E-06 1.3E-10 62.5 10.1 155 5-164 6-220 (418)
364 PF00503 G-alpha: G-protein al 98.3 8.5E-06 1.9E-10 67.1 11.7 122 42-165 227-389 (389)
365 cd03112 CobW_like The function 98.3 3.2E-06 6.9E-11 60.8 7.9 63 52-120 87-158 (158)
366 KOG0466 Translation initiation 98.3 4.3E-07 9.3E-12 70.5 3.4 172 3-184 38-257 (466)
367 KOG0464 Elongation factor G [T 98.3 2.3E-07 4.9E-12 74.8 2.0 117 4-124 38-170 (753)
368 TIGR03348 VI_IcmF type VI secr 98.3 5.2E-06 1.1E-10 77.0 10.8 111 7-122 115-257 (1169)
369 cd01849 YlqF_related_GTPase Yl 98.3 1.8E-06 3.8E-11 61.9 6.0 54 4-62 101-155 (155)
370 PF09547 Spore_IV_A: Stage IV 98.3 2.6E-05 5.6E-10 63.5 12.7 152 4-161 18-232 (492)
371 PRK01889 GTPase RsgA; Reviewed 98.3 4.6E-06 9.9E-11 67.7 8.6 84 72-162 109-193 (356)
372 KOG0467 Translation elongation 98.3 4.3E-06 9.3E-11 71.9 8.5 109 4-119 10-135 (887)
373 cd01855 YqeH YqeH. YqeH is an 98.3 1.4E-06 3.1E-11 64.5 4.8 24 4-27 128-151 (190)
374 PRK10416 signal recognition pa 98.2 7.8E-06 1.7E-10 65.3 8.8 96 51-160 196-304 (318)
375 PF03193 DUF258: Protein of un 98.2 1.5E-06 3.2E-11 62.2 4.1 23 5-27 37-59 (161)
376 COG5192 BMS1 GTP-binding prote 98.2 2.2E-05 4.7E-10 65.9 11.1 133 3-149 69-209 (1077)
377 TIGR00064 ftsY signal recognit 98.2 1.2E-05 2.5E-10 62.9 8.6 96 51-160 154-262 (272)
378 KOG0465 Mitochondrial elongati 98.2 6E-06 1.3E-10 69.5 7.2 112 5-120 41-168 (721)
379 PF03266 NTPase_1: NTPase; In 98.2 7.4E-06 1.6E-10 59.4 6.7 135 5-154 1-163 (168)
380 COG1162 Predicted GTPases [Gen 98.1 2E-05 4.3E-10 61.6 8.9 94 67-164 71-165 (301)
381 KOG1487 GTP-binding protein DR 98.1 1.9E-05 4.1E-10 60.2 8.0 83 5-90 61-151 (358)
382 TIGR03597 GTPase_YqeH ribosome 98.1 8.1E-06 1.8E-10 66.4 6.4 54 5-63 156-215 (360)
383 PRK13796 GTPase YqeH; Provisio 98.1 6.1E-06 1.3E-10 67.2 5.5 57 4-63 161-221 (365)
384 PRK12288 GTPase RsgA; Reviewed 98.1 7.8E-06 1.7E-10 66.0 5.7 58 6-66 208-271 (347)
385 PRK14974 cell division protein 98.0 2.1E-05 4.6E-10 63.2 7.4 95 52-160 223-324 (336)
386 PRK13695 putative NTPase; Prov 98.0 0.00015 3.2E-09 52.9 11.3 78 71-165 92-172 (174)
387 PRK11537 putative GTP-binding 98.0 7.3E-05 1.6E-09 59.8 10.1 95 52-158 91-196 (318)
388 KOG0447 Dynamin-like GTP bindi 98.0 0.00021 4.5E-09 60.0 12.8 81 53-137 413-507 (980)
389 PRK12289 GTPase RsgA; Reviewed 98.0 1E-05 2.2E-10 65.4 5.2 22 6-27 175-196 (352)
390 TIGR00157 ribosome small subun 98.0 1.3E-05 2.8E-10 61.8 5.5 23 5-27 122-144 (245)
391 PRK12727 flagellar biosynthesi 98.0 0.00045 9.7E-09 58.5 14.8 115 51-178 428-552 (559)
392 KOG1424 Predicted GTP-binding 97.9 1.6E-05 3.5E-10 65.8 4.5 55 4-63 315-370 (562)
393 COG3640 CooC CO dehydrogenase 97.9 8E-05 1.7E-09 56.1 7.3 61 53-120 135-197 (255)
394 COG0523 Putative GTPases (G3E 97.8 0.00047 1E-08 55.1 12.1 98 52-159 85-194 (323)
395 cd01854 YjeQ_engC YjeQ/EngC. 97.8 4E-05 8.8E-10 60.5 6.0 58 5-65 163-226 (287)
396 COG1162 Predicted GTPases [Gen 97.8 2.9E-05 6.4E-10 60.7 5.1 21 6-26 167-187 (301)
397 KOG0463 GTP-binding protein GP 97.8 0.00011 2.5E-09 58.9 8.3 25 2-26 132-156 (641)
398 KOG3859 Septins (P-loop GTPase 97.8 0.00015 3.3E-09 55.9 8.4 114 2-120 41-188 (406)
399 PF06858 NOG1: Nucleolar GTP-b 97.8 8.7E-05 1.9E-09 43.2 5.5 45 74-119 12-58 (58)
400 PF02492 cobW: CobW/HypB/UreG, 97.8 5.1E-05 1.1E-09 55.6 5.6 81 52-140 85-171 (178)
401 PRK14722 flhF flagellar biosyn 97.8 0.0005 1.1E-08 56.0 11.3 138 5-147 139-315 (374)
402 TIGR01425 SRP54_euk signal rec 97.7 0.00012 2.6E-09 60.5 7.5 64 51-120 182-251 (429)
403 PRK00098 GTPase RsgA; Reviewed 97.7 6.7E-05 1.5E-09 59.6 5.7 23 5-27 166-188 (298)
404 KOG1534 Putative transcription 97.7 5.3E-05 1.1E-09 56.1 4.6 114 53-169 99-254 (273)
405 cd03115 SRP The signal recogni 97.7 0.00055 1.2E-08 49.8 9.8 82 52-144 83-170 (173)
406 cd03114 ArgK-like The function 97.7 0.00024 5.3E-09 50.4 7.7 58 51-119 91-148 (148)
407 PF00448 SRP54: SRP54-type pro 97.7 0.0006 1.3E-08 50.8 9.6 84 52-147 84-174 (196)
408 cd00009 AAA The AAA+ (ATPases 97.6 0.00051 1.1E-08 47.7 8.5 23 5-27 21-43 (151)
409 cd02042 ParA ParA and ParB of 97.6 0.00043 9.3E-09 45.8 7.6 82 6-99 2-84 (104)
410 COG3523 IcmF Type VI protein s 97.6 0.0003 6.5E-09 64.5 8.8 113 7-122 129-270 (1188)
411 KOG0459 Polypeptide release fa 97.6 0.00015 3.2E-09 58.6 5.9 155 3-159 79-279 (501)
412 cd03111 CpaE_like This protein 97.6 0.00063 1.4E-08 45.4 7.8 99 10-117 7-106 (106)
413 KOG2484 GTPase [General functi 97.6 6.9E-05 1.5E-09 60.3 3.3 57 3-63 252-308 (435)
414 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00097 2.1E-08 43.0 8.1 96 6-116 2-99 (99)
415 PRK14721 flhF flagellar biosyn 97.5 0.00071 1.5E-08 56.0 8.8 89 52-154 270-365 (420)
416 TIGR00959 ffh signal recogniti 97.5 0.00091 2E-08 55.6 9.1 86 52-148 183-274 (428)
417 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0027 5.9E-08 46.5 10.5 85 5-102 27-118 (177)
418 cd02038 FleN-like FleN is a me 97.4 0.00076 1.6E-08 47.3 7.2 105 8-120 5-109 (139)
419 COG0563 Adk Adenylate kinase a 97.4 0.00013 2.7E-09 53.5 3.1 23 4-26 1-23 (178)
420 PF13207 AAA_17: AAA domain; P 97.4 0.00013 2.9E-09 49.6 3.0 22 5-26 1-22 (121)
421 PRK05703 flhF flagellar biosyn 97.4 0.0017 3.7E-08 54.1 10.0 84 52-148 300-392 (424)
422 PRK08118 topology modulation p 97.4 0.00014 3E-09 52.8 3.2 22 5-26 3-24 (167)
423 PRK14530 adenylate kinase; Pro 97.4 0.00014 3.1E-09 54.9 3.4 25 1-25 1-25 (215)
424 PRK00771 signal recognition pa 97.4 0.00029 6.2E-09 58.7 5.3 85 52-148 176-267 (437)
425 PRK10867 signal recognition pa 97.4 0.0014 3.1E-08 54.5 9.3 86 52-148 184-275 (433)
426 PRK07261 topology modulation p 97.4 0.00015 3.3E-09 52.8 3.1 23 4-26 1-23 (171)
427 KOG0469 Elongation factor 2 [T 97.3 0.0012 2.5E-08 55.1 7.8 124 5-132 21-174 (842)
428 PF13671 AAA_33: AAA domain; P 97.3 0.00019 4.1E-09 50.3 2.8 21 6-26 2-22 (143)
429 PRK08233 hypothetical protein; 97.3 0.00028 6.1E-09 51.5 3.6 26 1-26 1-26 (182)
430 PRK12726 flagellar biosynthesi 97.3 0.0045 9.7E-08 50.5 10.3 86 52-148 286-377 (407)
431 KOG2485 Conserved ATP/GTP bind 97.2 0.00052 1.1E-08 53.8 4.7 58 3-62 143-206 (335)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0055 1.2E-07 43.2 9.6 23 5-27 28-50 (144)
433 PF03215 Rad17: Rad17 cell cyc 97.2 0.0028 6.1E-08 54.0 9.4 21 6-26 48-68 (519)
434 cd02019 NK Nucleoside/nucleoti 97.2 0.00037 8E-09 42.7 3.0 21 6-26 2-22 (69)
435 PF13521 AAA_28: AAA domain; P 97.2 0.00027 5.9E-09 50.9 2.7 22 5-26 1-22 (163)
436 PRK12724 flagellar biosynthesi 97.2 0.003 6.5E-08 52.2 8.8 133 4-148 224-394 (432)
437 COG1161 Predicted GTPases [Gen 97.2 0.0016 3.4E-08 52.4 7.0 97 58-162 16-113 (322)
438 TIGR02475 CobW cobalamin biosy 97.2 0.0073 1.6E-07 48.9 10.7 21 6-26 7-27 (341)
439 COG1116 TauB ABC-type nitrate/ 97.1 0.00046 9.9E-09 52.6 3.5 22 6-27 32-53 (248)
440 COG1419 FlhF Flagellar GTP-bin 97.1 0.0079 1.7E-07 49.2 10.7 154 5-170 205-398 (407)
441 cd04178 Nucleostemin_like Nucl 97.1 0.0015 3.3E-08 47.6 6.1 44 77-122 1-44 (172)
442 PRK14723 flhF flagellar biosyn 97.1 0.0034 7.3E-08 55.6 9.2 95 52-157 264-366 (767)
443 PRK03839 putative kinase; Prov 97.1 0.00041 8.9E-09 50.8 3.1 22 5-26 2-23 (180)
444 PTZ00088 adenylate kinase 1; P 97.1 0.00046 9.9E-09 52.7 3.4 25 2-26 5-29 (229)
445 KOG1533 Predicted GTPase [Gene 97.1 0.0023 4.9E-08 48.4 6.8 21 3-23 2-22 (290)
446 PRK06217 hypothetical protein; 97.1 0.00049 1.1E-08 50.6 3.3 23 4-26 2-24 (183)
447 PF13555 AAA_29: P-loop contai 97.1 0.00061 1.3E-08 40.6 2.9 21 6-26 26-46 (62)
448 PRK06995 flhF flagellar biosyn 97.1 0.003 6.5E-08 53.2 8.1 89 52-154 335-430 (484)
449 PF00004 AAA: ATPase family as 97.1 0.00053 1.1E-08 47.1 3.1 22 6-27 1-22 (132)
450 COG1136 SalX ABC-type antimicr 97.1 0.00061 1.3E-08 51.5 3.5 22 6-27 34-55 (226)
451 PRK14531 adenylate kinase; Pro 97.1 0.00059 1.3E-08 50.2 3.3 24 3-26 2-25 (183)
452 PF11111 CENP-M: Centromere pr 97.1 0.044 9.4E-07 39.6 12.6 137 4-165 16-152 (176)
453 cd03110 Fer4_NifH_child This p 97.0 0.0062 1.3E-07 44.4 8.6 85 50-144 91-175 (179)
454 smart00382 AAA ATPases associa 97.0 0.00068 1.5E-08 46.6 3.2 25 4-28 3-27 (148)
455 COG1126 GlnQ ABC-type polar am 97.0 0.00085 1.8E-08 50.1 3.5 23 5-27 30-52 (240)
456 PF00005 ABC_tran: ABC transpo 97.0 0.00065 1.4E-08 47.3 2.8 23 5-27 13-35 (137)
457 cd02036 MinD Bacterial cell di 97.0 0.02 4.4E-07 41.4 10.9 84 53-144 64-147 (179)
458 PF05621 TniB: Bacterial TniB 97.0 0.0062 1.4E-07 48.0 8.4 100 4-117 62-189 (302)
459 KOG2423 Nucleolar GTPase [Gene 96.9 0.00028 6E-09 57.1 0.8 83 2-91 306-390 (572)
460 PF13238 AAA_18: AAA domain; P 96.9 0.00069 1.5E-08 46.3 2.6 21 6-26 1-21 (129)
461 cd01131 PilT Pilus retraction 96.9 0.0054 1.2E-07 45.7 7.5 22 6-27 4-25 (198)
462 PRK14532 adenylate kinase; Pro 96.9 0.00084 1.8E-08 49.5 3.1 23 4-26 1-23 (188)
463 TIGR02322 phosphon_PhnN phosph 96.9 0.0008 1.7E-08 49.2 3.0 22 5-26 3-24 (179)
464 TIGR00150 HI0065_YjeE ATPase, 96.9 0.005 1.1E-07 42.8 6.7 23 5-27 24-46 (133)
465 PHA00729 NTP-binding motif con 96.9 0.0011 2.3E-08 50.3 3.6 25 2-26 16-40 (226)
466 cd00071 GMPK Guanosine monopho 96.9 0.00091 2E-08 46.8 3.0 21 6-26 2-22 (137)
467 PRK10078 ribose 1,5-bisphospho 96.9 0.00092 2E-08 49.3 3.1 23 5-27 4-26 (186)
468 PRK05480 uridine/cytidine kina 96.9 0.0011 2.4E-08 49.7 3.6 25 2-26 5-29 (209)
469 PRK10751 molybdopterin-guanine 96.9 0.0011 2.5E-08 48.1 3.5 24 3-26 6-29 (173)
470 PF03205 MobB: Molybdopterin g 96.9 0.00097 2.1E-08 46.9 3.0 22 5-26 2-23 (140)
471 PRK13949 shikimate kinase; Pro 96.9 0.001 2.2E-08 48.4 3.2 22 5-26 3-24 (169)
472 PTZ00301 uridine kinase; Provi 96.9 0.0012 2.5E-08 49.8 3.6 25 1-25 1-25 (210)
473 PRK00625 shikimate kinase; Pro 96.9 0.001 2.2E-08 48.5 3.1 23 4-26 1-23 (173)
474 cd00820 PEPCK_HprK Phosphoenol 96.8 0.00099 2.1E-08 44.4 2.7 20 5-24 17-36 (107)
475 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0088 1.9E-07 46.7 8.4 84 5-93 82-166 (264)
476 PRK05416 glmZ(sRNA)-inactivati 96.8 0.02 4.3E-07 45.3 10.4 20 5-24 8-27 (288)
477 COG3839 MalK ABC-type sugar tr 96.8 0.0012 2.5E-08 53.0 3.5 22 6-27 32-53 (338)
478 COG3840 ThiQ ABC-type thiamine 96.8 0.0011 2.4E-08 48.3 3.0 23 5-27 27-49 (231)
479 KOG3929 Uncharacterized conser 96.8 0.0012 2.6E-08 50.5 3.2 142 4-149 46-235 (363)
480 PF07728 AAA_5: AAA domain (dy 96.8 0.0012 2.5E-08 46.1 3.0 22 5-26 1-22 (139)
481 TIGR03263 guanyl_kin guanylate 96.8 0.0011 2.4E-08 48.4 2.9 22 5-26 3-24 (180)
482 cd02023 UMPK Uridine monophosp 96.8 0.0011 2.4E-08 49.3 3.0 21 6-26 2-22 (198)
483 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.4E-08 48.6 2.9 21 5-25 5-25 (188)
484 PRK02496 adk adenylate kinase; 96.8 0.0013 2.9E-08 48.3 3.3 22 4-25 2-23 (184)
485 PRK13833 conjugal transfer pro 96.8 0.0073 1.6E-07 48.4 7.6 24 4-27 145-168 (323)
486 PF04665 Pox_A32: Poxvirus A32 96.8 0.0013 2.8E-08 50.4 3.1 24 3-26 13-36 (241)
487 cd01428 ADK Adenylate kinase ( 96.8 0.0011 2.4E-08 48.9 2.7 22 5-26 1-22 (194)
488 TIGR00235 udk uridine kinase. 96.8 0.0012 2.7E-08 49.5 3.0 23 4-26 7-29 (207)
489 PRK10646 ADP-binding protein; 96.7 0.013 2.9E-07 41.7 7.9 21 6-26 31-51 (153)
490 KOG3347 Predicted nucleotide k 96.7 0.0011 2.4E-08 46.6 2.4 24 2-25 6-29 (176)
491 COG3845 ABC-type uncharacteriz 96.7 0.01 2.2E-07 49.5 8.3 62 56-119 138-201 (501)
492 PRK06547 hypothetical protein; 96.7 0.0018 3.9E-08 47.2 3.6 25 2-26 14-38 (172)
493 PRK05057 aroK shikimate kinase 96.7 0.0016 3.5E-08 47.4 3.4 24 3-26 4-27 (172)
494 PRK04040 adenylate kinase; Pro 96.7 0.0016 3.4E-08 48.2 3.3 24 3-26 2-25 (188)
495 PRK13851 type IV secretion sys 96.7 0.0082 1.8E-07 48.6 7.7 24 4-27 163-186 (344)
496 COG4525 TauB ABC-type taurine 96.7 0.0013 2.8E-08 48.5 2.8 21 6-26 34-54 (259)
497 PRK04195 replication factor C 96.7 0.026 5.7E-07 48.0 11.0 23 5-27 41-63 (482)
498 COG4615 PvdE ABC-type sideroph 96.7 0.0057 1.2E-07 49.9 6.5 130 6-151 352-510 (546)
499 COG0802 Predicted ATPase or ki 96.7 0.0085 1.8E-07 42.2 6.6 22 6-27 28-49 (149)
500 cd03238 ABC_UvrA The excision 96.7 0.0016 3.4E-08 47.7 3.1 21 5-25 23-43 (176)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-44 Score=257.63 Aligned_cols=174 Identities=59% Similarity=0.975 Sum_probs=165.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|+|||+|+.||..+.|.+.+..|+|.|+..+.+.++++.+++++|||+|+++|+++..+++++|+++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc-EEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 160 (205)
|||+++.+||..+.+|+.++.++..+++|.++||||+|+.+ .+.+..+++++|+.+++++ ++|+||+++.+++++|..
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999976 6889999999999999998 999999999999999999
Q ss_pred HHHHHHHHhcccCCCC
Q 028686 161 IARDIKQRLADTDSRS 176 (205)
Q Consensus 161 i~~~~~~~~~~~~~~~ 176 (205)
+...+..+.......+
T Consensus 167 la~~lk~~~~~~~~~~ 182 (205)
T KOG0084|consen 167 LAKELKQRKGLHVKWS 182 (205)
T ss_pred HHHHHHHhcccCCCCC
Confidence 9999988877655554
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-43 Score=249.67 Aligned_cols=198 Identities=34% Similarity=0.585 Sum_probs=170.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
...||+++|+.++||||||++|+...++..|.+|+|.||..+.+.+.++.+.+++|||+|+++|+++.+.|+++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCC-CCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||+++..||+++..|++.+...+.. ++-|++||||.||.+ .+++..++....++++++.|+++||+.|+||..+|..
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 99999999999999999999998875 477889999999987 6889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc--CCCCCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686 161 IARDIKQRLADT--DSRSEPSTIKINQPDQAGGVGQAAQKSACCG 203 (205)
Q Consensus 161 i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 203 (205)
|..++.+....+ ..++....+++......+ +..+-.+|||
T Consensus 180 Iaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~---~~s~~~~~~C 221 (221)
T KOG0094|consen 180 IAAALPGMEVLEILSKQESMVDINLKGSPNEQ---QASKPGLCSC 221 (221)
T ss_pred HHHhccCccccccccccccceeEEccCCCCcc---cccCCCCCCC
Confidence 888877665433 222334445554221111 1112566888
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-43 Score=249.46 Aligned_cols=195 Identities=39% Similarity=0.690 Sum_probs=173.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|+.++|||||+.|+..+.|++...||+|.-|..+.+.++...+++.||||+|+++|.++.+.|+++|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||+++.+||..+..|+.++.+...+++-|.+||||+||.+ .+++..++++.++...+..++|+||+++.|++++|..|
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999998888889999999999976 68899999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCC--CCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686 162 ARDIKQRLADTDSR--SEPSTIKINQPDQAGGVGQAAQKSACCG 203 (205)
Q Consensus 162 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 203 (205)
.+.+.......... .++.++.+.+.+ ......+|||
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~------~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ------EPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCC------CCcCcCCcCC
Confidence 99998877665542 222444444432 3344566775
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-41 Score=243.86 Aligned_cols=173 Identities=71% Similarity=1.147 Sum_probs=164.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|+++||||+++.+|..+.+...+..|+|+++..+.+.++++.+.+++|||+|+++++.+...|++.|+++++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L 90 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL 90 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||+++..||+++..|+..|..+..+++|+++||||+|+.. .+.+..+..+++|.++|+.++|+||++|.||+++|..|
T Consensus 91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L 169 (207)
T KOG0078|consen 91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL 169 (207)
T ss_pred EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence 99999999999999999999999988999999999999966 78899999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCC
Q 028686 162 ARDIKQRLADTDSR 175 (205)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (205)
.+.+.++.+..+..
T Consensus 170 a~~i~~k~~~~~~~ 183 (207)
T KOG0078|consen 170 ARDILQKLEDAELE 183 (207)
T ss_pred HHHHHhhcchhhhc
Confidence 99999866654433
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.5e-39 Score=240.19 Aligned_cols=198 Identities=39% Similarity=0.774 Sum_probs=169.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+.|+++|+.|||||||+++|..+.+...+.+|.+.++..+.+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|+++++||+++..|++.+......++|+++|+||+||.+ ..++..+++++++++. ++.++++||++|.||+++|++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877667899999999999965 5678888889998875 78999999999999999999999
Q ss_pred HHHHHHhcc--cCCCCCCcccccc-CCCCCCCCCCCCCCCCCc
Q 028686 163 RDIKQRLAD--TDSRSEPSTIKIN-QPDQAGGVGQAAQKSACC 202 (205)
Q Consensus 163 ~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~ 202 (205)
+.+.+.... ...+...+-++++ .|..+....+..+--.||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (202)
T cd04120 160 DDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC 202 (202)
T ss_pred HHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence 988765332 2333444444444 444566666666766676
No 6
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=7.8e-40 Score=230.68 Aligned_cols=169 Identities=40% Similarity=0.676 Sum_probs=158.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|+|||||++++.+.+|...+..|+|.++..+.+.++++.+.++||||+|+++|.++...+++.+|.+++|
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlv 88 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 88 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCC-CCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDES-KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 156 (205)
||+++++||+.+..|.+++..... ...|+||+|||.|+.+. ++.++...++.|+...| +||||+||++..||++
T Consensus 89 ydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 89 YDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDE 168 (210)
T ss_pred eecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHH
Confidence 999999999999999999987765 34799999999999763 47899999999999887 8999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028686 157 VFFSIARDIKQRLAD 171 (205)
Q Consensus 157 ~~~~i~~~~~~~~~~ 171 (205)
+|+.+.+.++.....
T Consensus 169 AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 169 AFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHhccch
Confidence 999999999987764
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-39 Score=227.46 Aligned_cols=171 Identities=48% Similarity=0.841 Sum_probs=163.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+|++++|+.|+|||+|+.+|+...|.+.+..|+|.++....+.++++.+++++|||+|++.++++...|++.+.++|+|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||+++++||..+..|+..++++..++..|++++||+||.. .+.+..+|.+.|++++|..+.++||+++.||+++|....
T Consensus 86 ydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred EEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999888999999999999965 678999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC
Q 028686 163 RDIKQRLADTDS 174 (205)
Q Consensus 163 ~~~~~~~~~~~~ 174 (205)
..+....+....
T Consensus 165 ~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 165 KEIYRKIQDGVF 176 (216)
T ss_pred HHHHHHHHhccc
Confidence 999887765443
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-38 Score=236.39 Aligned_cols=176 Identities=33% Similarity=0.640 Sum_probs=156.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
+||+++|++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+||++|++.+..++..++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988899999999888888887 7889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQV 157 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 157 (205)
||++++++|+.+..|+..+.... ..++|++||+||+|+.+ ...+..+++..+++..+ ..++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999999999886542 25689999999999964 45677889999999988 69999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCCCcc
Q 028686 158 FFSIARDIKQRLADTDSRSEPST 180 (205)
Q Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~ 180 (205)
|+++++.+....+......++++
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~ 182 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPED 182 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCc
Confidence 99999999887666555555543
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-39 Score=220.91 Aligned_cols=178 Identities=51% Similarity=0.873 Sum_probs=162.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
++.+++|++|+|||+|+.+|....|+..|..|+|.++..++++++|..++++|||++|+++|+.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|+++.|||.+...|++++...+ +.+|-++|+||.|+++ .+.+..++++.|+..-|+.+||+|+++.++++..|+-|.+
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence 9999999999999999999887 4799999999999965 6778899999999999999999999999999999999999
Q ss_pred HHHHHh-cccCCCCCCccccc
Q 028686 164 DIKQRL-ADTDSRSEPSTIKI 183 (205)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~~~ 183 (205)
.+++.. +++..+.....+++
T Consensus 167 qvl~~k~r~~~~~~r~~~~~l 187 (198)
T KOG0079|consen 167 QVLQAKLRESVEQQRADAVSL 187 (198)
T ss_pred HHHHHHHhhcHHHHhhcceEe
Confidence 998876 44444333333333
No 10
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.4e-39 Score=220.65 Aligned_cols=182 Identities=41% Similarity=0.685 Sum_probs=165.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|.+|+|||||+-+|..+.+++..+.|+|.++..+.+.+++.++++-||||+|+++|+.+.+.|++.|.++|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
||++.+++|..+..|++++..+.. +++-.++|+||+|-.+ ++.++.++..+|++.+++-++|+||++.+|+...|+.+
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence 999999999999999999988874 7788899999999743 68899999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCccccccC
Q 028686 162 ARDIKQRLADTDSRSEPSTIKINQ 185 (205)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~ 185 (205)
++.+.+-..--+..+..-+..+.+
T Consensus 170 veKIi~tp~l~~~~n~~~~~~i~~ 193 (209)
T KOG0080|consen 170 VEKIIETPSLWEEGNSSAGLDIAS 193 (209)
T ss_pred HHHHhcCcchhhccCCcccccccc
Confidence 999987655544444444444443
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.1e-38 Score=231.99 Aligned_cols=165 Identities=44% Similarity=0.739 Sum_probs=152.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|+.|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999999999888888899988888888999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||+++++||+++..|++.+.... +++|++|||||.||.+ ...+..++++.+++..+++++++||++|.||+++|+++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999997765 6799999999999965 45688899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028686 162 ARDIKQR 168 (205)
Q Consensus 162 ~~~~~~~ 168 (205)
.+.+...
T Consensus 163 ~~~i~~~ 169 (189)
T cd04121 163 ARIVLMR 169 (189)
T ss_pred HHHHHHh
Confidence 9888653
No 12
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=5.1e-38 Score=233.29 Aligned_cols=185 Identities=31% Similarity=0.550 Sum_probs=158.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|++|||||||+++|+.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999998888888887444 4556778888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
+++++||+.+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999876542 5789999999999965 45677778888898889999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686 162 ARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 203 (205)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 203 (205)
++.+.++.+.. .+..+.+-.++.||++|||
T Consensus 159 ~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 159 VRALRQQRQGG------------QGPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHhhccc------------CCCcCCCCCcccccccCce
Confidence 99887666553 1334555667788888887
No 13
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-38 Score=227.07 Aligned_cols=169 Identities=45% Similarity=0.793 Sum_probs=161.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.|||+++|++++|||-|+.||..++|.....+|+|.++....+.++++.++.+||||+|+++|+.+..+|++.+.++++|
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllV 93 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 93 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++.+.+|+++..|+.+++.+..+++++++||||+||.. .+.+..++++.+++..+..++++||.+..+++++|..++
T Consensus 94 YDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 94 YDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred EechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999976 678899999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
..+.......
T Consensus 173 ~~I~~~vs~k 182 (222)
T KOG0087|consen 173 TEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHH
Confidence 8887765543
No 14
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.4e-37 Score=233.01 Aligned_cols=167 Identities=44% Similarity=0.801 Sum_probs=153.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||++|++++..++..+++.++++++|
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888889999999888999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|++++
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 92 YDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887666899999999999965 456777888899988899999999999999999999999
Q ss_pred HHHHHHhc
Q 028686 163 RDIKQRLA 170 (205)
Q Consensus 163 ~~~~~~~~ 170 (205)
..+.+...
T Consensus 171 ~~i~~~~~ 178 (216)
T PLN03110 171 LEIYHIIS 178 (216)
T ss_pred HHHHHHhh
Confidence 99877543
No 15
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.3e-37 Score=234.86 Aligned_cols=188 Identities=28% Similarity=0.480 Sum_probs=155.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|.+|||||||+++|+.+.+.. +.+|.+.++..... ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999865 57888877665443 4578999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC------------------CCCccCHHHHHHHHHHhC-----
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE------------------SKRAVPTSKGQALADEYG----- 140 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~----- 140 (205)
|++++++|+++..|+..+.+...+++|++||+||+||.+ ....+..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988888776556799999999999965 146788899999998876
Q ss_pred ---------CcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCCCCCc
Q 028686 141 ---------IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 202 (205)
Q Consensus 141 ---------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 202 (205)
++|+|+||++|.||+++|..+++.+.+...+.....+... ......+++.+|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQ------GTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhh------ccccCCCcccCCCCCC
Confidence 6899999999999999999999999876655544222211 1222334778888888
No 16
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7.3e-37 Score=228.61 Aligned_cols=168 Identities=54% Similarity=0.906 Sum_probs=152.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..++++++++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 58999999999999999999999998888899999888888888888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|++.+.... +..|++||+||+|+.+ ...+..+++..++...+++++++||++|.||+++|++|.
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999987765 5689999999999965 445677888889988899999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
+.+.....+.
T Consensus 164 ~~~~~~~~~~ 173 (199)
T cd04110 164 ELVLRAKKDN 173 (199)
T ss_pred HHHHHhhhcc
Confidence 9998764443
No 17
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.4e-37 Score=228.36 Aligned_cols=165 Identities=29% Similarity=0.572 Sum_probs=146.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|||||||+.+|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++|+.++..+++++|++|
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 7779999999999999999999999999889999998655 455678889999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhC-CcEEEEc
Q 028686 81 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETS 147 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~S 147 (205)
+|||+++++||+++. .|...+.... +++|++||+||.||.+.. ..+..++++.+++..+ ++|+++|
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 999999999999997 5888887654 579999999999996532 2366788899999988 6999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 028686 148 AKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 148 a~~~~gi~~~~~~i~~~~~~ 167 (205)
|++|.||+++|+++++.+..
T Consensus 159 Ak~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.2e-37 Score=231.74 Aligned_cols=169 Identities=20% Similarity=0.417 Sum_probs=150.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||+|+++|..+.+...+.||.+.++. ..+.+++..+.+.+|||+|++.|..+...+++++|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 3589999999999999999999999999999999987664 567889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcC
Q 028686 82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa 148 (205)
|||+++++||+.+ ..|++.+.... ++.|+++|+||+||.+. ...+..++++.+++++++ .|+|+||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 9999999999985 78999998765 57899999999999642 256889999999999998 6999999
Q ss_pred CCCC-CHHHHHHHHHHHHHHHhccc
Q 028686 149 KTNL-NVEQVFFSIARDIKQRLADT 172 (205)
Q Consensus 149 ~~~~-gi~~~~~~i~~~~~~~~~~~ 172 (205)
++|. ||+++|..++..+.+.....
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~~~~~ 194 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNKLSPP 194 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHhcccc
Confidence 9997 89999999999987764443
No 19
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1e-36 Score=226.43 Aligned_cols=190 Identities=47% Similarity=0.861 Sum_probs=161.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
+||+++|++|||||||+++|.++.+. ..+.+|.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999999875 46778888888877888899999999999999999999899999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+++..|+..+......++|+++|+||+|+.. ...+..+++..++..++++|+++||++|.|++++|++|.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887666799999999999964 355667888889988999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCccccccCCCCCCCCCCCCCCCCCc
Q 028686 163 RDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 202 (205)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 202 (205)
+.+.+...++....+- .. ..-+.+.+++++||
T Consensus 160 ~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~ 191 (191)
T cd04112 160 KELKHRKYEQPDEGKF-KI-------SDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHhccccCCCCcE-Ee-------ccccCcccccCCCC
Confidence 9998775443333221 11 12234567788887
No 20
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.2e-36 Score=223.24 Aligned_cols=167 Identities=48% Similarity=0.806 Sum_probs=151.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878899998888888888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++|+.+..|+..+......+.|+++++||.|+.+ ...+..+++..++...+++++++||+++.|++++|.++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999887666789999999999864 4556778888888888899999999999999999999999
Q ss_pred HHHHHhcc
Q 028686 164 DIKQRLAD 171 (205)
Q Consensus 164 ~~~~~~~~ 171 (205)
.+..+...
T Consensus 160 ~~~~~~~~ 167 (188)
T cd04125 160 LIIKRLEE 167 (188)
T ss_pred HHHHHhhc
Confidence 99765443
No 21
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.2e-36 Score=219.79 Aligned_cols=164 Identities=46% Similarity=0.800 Sum_probs=151.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888889999888888888899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|++.+.....++.|+++|+||+|+.+ ...+..+++.++++..+++++++||++|.|++++|.++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999877667799999999999965 456778889999999999999999999999999999999
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87754
No 22
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.4e-36 Score=223.71 Aligned_cols=162 Identities=23% Similarity=0.486 Sum_probs=147.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|+|||||+++|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++|..+++.+++++|++|+|
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 58999999999999999999999999999999998655 46778899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686 83 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (205)
||+++++||+++ ..|++.+.... ++.|++||+||.||.+. ...+..+++++++++.++ +|+|+||+
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 999999999997 78999998766 57999999999999642 245889999999999995 89999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 028686 150 TNLN-VEQVFFSIARDIK 166 (205)
Q Consensus 150 ~~~g-i~~~~~~i~~~~~ 166 (205)
+|.| |+++|+.+++.+.
T Consensus 163 ~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 163 QSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 9998 9999999998654
No 23
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.3e-36 Score=222.50 Aligned_cols=162 Identities=32% Similarity=0.643 Sum_probs=146.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|+|||+|+.++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|+++++.+...++++++++|+|
T Consensus 1 ~~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 1 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 47999999999999999999999999989999998665 45677889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC---------CccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686 83 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK---------RAVPTSKGQALADEYGI-KFFETSAKTN 151 (205)
Q Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (205)
||+++++||+++ ..|+..+.... +++|++|||||+||.+.. ..+..+++..+++..++ +|+|+||++|
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 999999999998 68999998765 579999999999996432 24788999999999997 6999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARDIK 166 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~ 166 (205)
.||+++|+.+++.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998763
No 24
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.1e-36 Score=224.69 Aligned_cols=170 Identities=42% Similarity=0.744 Sum_probs=152.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
.+||+|+|++|||||||+++|.++.+...+.+|.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988888899998888888877 4677899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||+++++||+++..|+..+..... ...|++||+||.|+.+ ...+..++...+++.++++++++||++|.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999987653 4578899999999965 4567888899999999999999999999999999999
Q ss_pred HHHHHHHHhcccC
Q 028686 161 IARDIKQRLADTD 173 (205)
Q Consensus 161 i~~~~~~~~~~~~ 173 (205)
|.+.+.++....+
T Consensus 161 l~~~~~~~~~~~~ 173 (211)
T cd04111 161 LTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHhhcCC
Confidence 9999887755443
No 25
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-37 Score=209.41 Aligned_cols=174 Identities=43% Similarity=0.732 Sum_probs=164.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+|++++|+.|+|||+|+++|+..++......|+|.++.+..+.+.++.++++||||+|+++|++....|++.|.++++|
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV 88 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 88 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||+++++||+.+..|+..++....+++.+++++||.||.+ ++++...++..|++++.+.++|+||++|+++++.|-...
T Consensus 89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 167 (214)
T ss_pred EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence 9999999999999999999999889999999999999965 788999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCC
Q 028686 163 RDIKQRLADTDSRSE 177 (205)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (205)
+.+..+.+..+-.++
T Consensus 168 ~tIl~kIE~GElDPe 182 (214)
T KOG0086|consen 168 RTILNKIESGELDPE 182 (214)
T ss_pred HHHHHHHhhcCCCHH
Confidence 999988776554443
No 26
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.9e-36 Score=226.38 Aligned_cols=170 Identities=23% Similarity=0.434 Sum_probs=147.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|..+.+...+.||.+.++. ..+.+++..+.+.+|||+|++.|..+++.+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999999999986654 5678899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686 83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (205)
||++++++|+.+. .|...+.... +++|++||+||+||.+.. ..+..+++..++++.++ +|+|+||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999995 5777665544 679999999999996421 23678899999999995 89999999
Q ss_pred CCC-CHHHHHHHHHHHHHHHhcccCC
Q 028686 150 TNL-NVEQVFFSIARDIKQRLADTDS 174 (205)
Q Consensus 150 ~~~-gi~~~~~~i~~~~~~~~~~~~~ 174 (205)
++. ||+++|+.++.+..........
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~~~~ 184 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHRQLR 184 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCCccc
Confidence 988 5999999999988775544333
No 27
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.2e-36 Score=226.11 Aligned_cols=164 Identities=33% Similarity=0.539 Sum_probs=148.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC-EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
+||+++|++|||||||+++|.++.+...+.+|.+.+++...+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999999888888864 578999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
||++++++|+++..|+..+..... .+.|+++|+||.|+.+ ...+..++...+++.++++++++||++|+|++++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999987643 3578999999999964 456778888999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028686 160 SIARDIKQR 168 (205)
Q Consensus 160 ~i~~~~~~~ 168 (205)
++.+.+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999998764
No 28
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.6e-36 Score=221.64 Aligned_cols=162 Identities=23% Similarity=0.474 Sum_probs=145.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
++||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..+.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999999899999986654 6778899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686 83 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (205)
||+++++||+++ ..|++.+.... +++|+++|+||.||.+. ...+..++++++++++++ +|+|+||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999998776 57999999999999641 235888999999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 028686 150 TNLN-VEQVFFSIARDIK 166 (205)
Q Consensus 150 ~~~g-i~~~~~~i~~~~~ 166 (205)
+|++ |+++|..+++.++
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999999654
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=223.08 Aligned_cols=168 Identities=37% Similarity=0.605 Sum_probs=148.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|||||||+++++++.+...+.||.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4569999999999999999999999998888888887555 566778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||++++++|+.+..|+..+.+.. ..++|+++|+||.|+.+ ...+..+++..++..++++++++||++|.|++++|.
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence 9999999999999999999987664 35789999999999864 455677788888888889999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028686 160 SIARDIKQRLA 170 (205)
Q Consensus 160 ~i~~~~~~~~~ 170 (205)
++++.+.+..+
T Consensus 161 ~l~~~l~~~~~ 171 (189)
T PTZ00369 161 ELVREIRKYLK 171 (189)
T ss_pred HHHHHHHHHhh
Confidence 99998876433
No 30
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.3e-35 Score=220.77 Aligned_cols=168 Identities=33% Similarity=0.598 Sum_probs=148.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
+||+|+|++|+|||||+++|+++.+.. .+.+|.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998874 6888998888888889999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC---CCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES---KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
||++++++|+++..|++.+.... ++.|+++|+||+|+.+. ...+..+++..++..++++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999987654 47999999999998542 234556778888888889999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 028686 160 SIARDIKQRLADT 172 (205)
Q Consensus 160 ~i~~~~~~~~~~~ 172 (205)
++.+.+.+.....
T Consensus 160 ~i~~~~~~~~~~~ 172 (193)
T cd04118 160 KVAEDFVSRANNQ 172 (193)
T ss_pred HHHHHHHHhcccc
Confidence 9999998765443
No 31
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.6e-37 Score=211.56 Aligned_cols=200 Identities=38% Similarity=0.613 Sum_probs=174.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
.+|++++|++-+|||+|++.|..+++.+-..||.|.|++...+.+ +|..+++++|||+|+++|+++...|++++-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 589999999999999999999999999999999999998777655 6789999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCC-cEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNV-NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~-piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
|||++|++||+++..|+.+...+.. |.. ...+|++|+||.. .++++.+++++++...|+.++|+||++|.||++.|+
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S-qRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS-QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh-hccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 9999999999999999999887765 444 4468899999974 789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCC--CCCcccc-ccCCCCCCCCCCCCCCCCCcC
Q 028686 160 SIARDIKQRLADTDSR--SEPSTIK-INQPDQAGGVGQAAQKSACCG 203 (205)
Q Consensus 160 ~i~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 203 (205)
.+.+.+....+..+.. ..=..++ ..+.+.+.+..-+.+.+.|||
T Consensus 167 mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 167 MLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 9999998877663332 2212222 556777777788888899998
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.1e-35 Score=216.39 Aligned_cols=165 Identities=73% Similarity=1.188 Sum_probs=151.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 36899999999999999999999999999999999988888888889888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++|.++..|+..+.+....++|+++|+||+|+.+ ...+..+++..++...+.+++++||+++.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887666799999999999975 45567788888999889999999999999999999999
Q ss_pred HHHHHH
Q 028686 162 ARDIKQ 167 (205)
Q Consensus 162 ~~~~~~ 167 (205)
.+++..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998865
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.3e-35 Score=217.01 Aligned_cols=163 Identities=33% Similarity=0.552 Sum_probs=147.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|..+.+...+.||.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 57999999999999999999999999888888887545 45677888899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
||+++++||+.+..|+..+.+.. .+++|+++|+||+|+.+ ...+..++...+++..+++|+++||++|.||+++|+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999999988887754 35799999999999965 45678889999999999999999999999999999999
Q ss_pred HHHHHH
Q 028686 162 ARDIKQ 167 (205)
Q Consensus 162 ~~~~~~ 167 (205)
++.+.+
T Consensus 160 ~~~~~~ 165 (172)
T cd04141 160 VREIRR 165 (172)
T ss_pred HHHHHH
Confidence 988876
No 34
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.7e-35 Score=214.18 Aligned_cols=160 Identities=49% Similarity=0.910 Sum_probs=147.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
++|+++|++|+|||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888999998888888889988899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|+++++||+.+..|++.+......+.|+++|+||.|+.. ...+..+++..+++..+.+|+++||++|.|++++|.+|.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999999877655799999999999965 4567788999999988999999999999999999999986
Q ss_pred H
Q 028686 164 D 164 (205)
Q Consensus 164 ~ 164 (205)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 4
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.8e-35 Score=213.95 Aligned_cols=161 Identities=39% Similarity=0.767 Sum_probs=153.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|+++||||||+++|.++.+...+.+|.+.+.....+.+++..+.+.+||++|++++..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
+++++||+.+..|++.+......+.|++|++||.|+.+ ...+..++++.++++++.+|+++||+++.||.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999988866799999999999965 57788999999999999999999999999999999999998
Q ss_pred HH
Q 028686 165 IK 166 (205)
Q Consensus 165 ~~ 166 (205)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.1e-35 Score=213.60 Aligned_cols=163 Identities=51% Similarity=0.904 Sum_probs=148.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.++++...+.+|.+.++....+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888899988888777778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++|+.+..|+..+......+.|+++|+||+|+.+ ...+..++..+++...+++++++||+++.|++++|+++.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999877656799999999999965 3445677888888888999999999999999999999998
Q ss_pred HHHH
Q 028686 164 DIKQ 167 (205)
Q Consensus 164 ~~~~ 167 (205)
.+..
T Consensus 161 ~~~~ 164 (165)
T cd01865 161 IICD 164 (165)
T ss_pred HHHh
Confidence 7653
No 37
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.8e-35 Score=217.99 Aligned_cols=166 Identities=30% Similarity=0.560 Sum_probs=144.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
+||+++|++|||||||+++|.++.+...+.++.+.++... +... +..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888888888776543 4454 7788999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC---CccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHH
Q 028686 83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK---RAVPTSKGQALADEYGI-KFFETSAKTNLNVEQV 157 (205)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 157 (205)
||+++++||+++. .|+..+.... +++|+++|+||.|+.... ..+..+++++++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999996 4888876554 579999999999986422 34667888999999987 9999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028686 158 FFSIARDIKQRLAD 171 (205)
Q Consensus 158 ~~~i~~~~~~~~~~ 171 (205)
|+.+++.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999875554
No 38
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=2.6e-35 Score=217.18 Aligned_cols=163 Identities=25% Similarity=0.504 Sum_probs=145.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|+++.+...+.||.+.++..+.+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999999998888999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC----CCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
|++++++|+++..|++.+........| ++|+||+|+... ......++++.+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876545566 678999999531 112234667788888889999999999999999999
Q ss_pred HHHHHHHH
Q 028686 160 SIARDIKQ 167 (205)
Q Consensus 160 ~i~~~~~~ 167 (205)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988865
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.4e-35 Score=212.85 Aligned_cols=163 Identities=64% Similarity=1.058 Sum_probs=149.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999998888889998888888888888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|.++..|+..+.....++.|+++|+||.|+.. ...+..+++..+++..+++++++||++|.|++++|.++.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999999877656799999999999865 455777888999999999999999999999999999999
Q ss_pred HHHH
Q 028686 163 RDIK 166 (205)
Q Consensus 163 ~~~~ 166 (205)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8875
No 40
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=217.47 Aligned_cols=169 Identities=49% Similarity=0.829 Sum_probs=153.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999998888888999888888888998889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+.....+..|+++|+||.|+.+ ...+..++++.+++.++++++++||+++.|++++|.+++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999988776656799999999999965 456778899999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
+.+.+...+.
T Consensus 165 ~~~~~~~~~~ 174 (210)
T PLN03108 165 AKIYKKIQDG 174 (210)
T ss_pred HHHHHHhhhc
Confidence 9998765433
No 41
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-36 Score=204.30 Aligned_cols=172 Identities=44% Similarity=0.800 Sum_probs=159.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|..|+|||+|+++|..+-|++....|+|.++..+++.+++..++++||||+|+++|+++...|++.|+++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++...||+-+..|+.+|..+.+.++--|+|+||.|+.+ ++++..+..++|.....+.++|+||++-.+++.+|..+
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence 99999999999999999999999988888899999999965 66788888899999888899999999999999999998
Q ss_pred HHHHHHHhcccCC
Q 028686 162 ARDIKQRLADTDS 174 (205)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (205)
.-.+....+..+.
T Consensus 165 a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 165 ACRLISEARQNDL 177 (213)
T ss_pred HHHHHHHHHhccc
Confidence 8887766655444
No 42
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.1e-35 Score=215.20 Aligned_cols=166 Identities=46% Similarity=0.854 Sum_probs=148.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC----------CEEEEEEEEeCCChhhhhhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITTA 71 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 71 (205)
..+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+. +..+.+.+||++|++++..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 35899999999999999999999999999999999988877666554 45689999999999999999999
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC
Q 028686 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 150 (205)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (205)
+++++|++++|||+++++||.++..|+..+.... .++.|+++|+||+|+.+ ...+..+++..+++..+++++++||++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 9999999999999999999999999999997764 35789999999999965 455777889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~~~~ 168 (205)
|.|++++|+++.+.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887653
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.5e-35 Score=212.18 Aligned_cols=162 Identities=33% Similarity=0.710 Sum_probs=148.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998899999999998888889999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC-----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~-----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 158 (205)
|++++++|+.+..|+..+..... .+.|+++|+||+|+.+ ...+..++...++...+++++++||+++.|++++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999987653 4689999999999964 35567888888888888999999999999999999
Q ss_pred HHHHHHHH
Q 028686 159 FSIARDIK 166 (205)
Q Consensus 159 ~~i~~~~~ 166 (205)
++|++.+.
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998764
No 44
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-35 Score=201.45 Aligned_cols=168 Identities=51% Similarity=0.912 Sum_probs=159.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+|++++|++.+|||||+.++++..+...+.+|.|.++..+++.-..+.+++++|||+|+++|+.+..+++++++++|++|
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 59999999999999999999999999999999999999998877778899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|+++.+||..+..|...|..+.-.++|+|+|+||+|+.+ ++.+..+..+.++.++|..+||+||+.+.|++++|+.++.
T Consensus 102 DitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred ecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 999999999999999999988888999999999999965 6778899999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 028686 164 DIKQRLADT 172 (205)
Q Consensus 164 ~~~~~~~~~ 172 (205)
.+.+...+.
T Consensus 181 ~Ic~kmses 189 (193)
T KOG0093|consen 181 IICDKMSES 189 (193)
T ss_pred HHHHHhhhh
Confidence 998876654
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=6.6e-35 Score=213.81 Aligned_cols=161 Identities=26% Similarity=0.526 Sum_probs=142.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|+|||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+||++|++++..++..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998889999986664 4567888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686 83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 149 (205)
||++++++|+.+. .|+..+.... +++|++||+||.|+.+. ...+..++++.++++.+ +.|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 5988887654 57999999999998643 14577888899998887 799999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARDI 165 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~~ 165 (205)
+|.|++++|+.+++.+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998864
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.1e-34 Score=219.76 Aligned_cols=164 Identities=28% Similarity=0.540 Sum_probs=147.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 45689999999999999999999999998899999998888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|||++++++|..+..|+..+.... +++|+++|+||+|+.+ ..+..+++ .++...+++|+++||++|.|++++|++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 9999999999999999999998765 5799999999999953 33444555 677778899999999999999999999
Q ss_pred HHHHHHHH
Q 028686 161 IARDIKQR 168 (205)
Q Consensus 161 i~~~~~~~ 168 (205)
|.+.+.+.
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99988654
No 47
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.6e-34 Score=209.75 Aligned_cols=163 Identities=36% Similarity=0.638 Sum_probs=145.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|++|||||||+++|+++.+...+.||.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999999999999999888888888889999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
++++++|+.+..|++.+.+... ...|+++|+||+|+.+... ....+++..++.+++.+++++||++|.|++++|+.+.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999866543 4578999999999854322 3356677788888889999999999999999999999
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88854
No 48
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3.1e-34 Score=208.93 Aligned_cols=164 Identities=49% Similarity=0.866 Sum_probs=150.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|.+|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..+...+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999998888888888888888888898889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|..+..|+..+.....+++|+++|+||.|+.+ ...+..+++..++...+++++++||+++.|++++|.++.
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887667899999999999964 455778888888888899999999999999999999999
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T cd01866 163 KEIYE 167 (168)
T ss_pred HHHHh
Confidence 88754
No 49
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=3.7e-34 Score=207.73 Aligned_cols=162 Identities=48% Similarity=0.841 Sum_probs=148.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|.+..+...+.|+.+.++....+.+++..+.+.+||+||++.+..++..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 57999999999999999999999998888889999888888899998889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|..+..|+..+......++|+++|+||.|+.+ ...+..++...++...+++++++||++|.|++++|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999887756799999999999965 355677888888888889999999999999999999998
Q ss_pred HHH
Q 028686 163 RDI 165 (205)
Q Consensus 163 ~~~ 165 (205)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.7e-34 Score=208.97 Aligned_cols=160 Identities=41% Similarity=0.696 Sum_probs=142.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||++++..+.+...+.+|.+ +.+...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999998888888876 455677788888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|++++++|+.+..|+..+..... .+.|+++|+||+|+.+ ...+..++...+++.++.+++++||+++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999977643 5799999999999965 345667778888888889999999999999999999998
Q ss_pred HHH
Q 028686 163 RDI 165 (205)
Q Consensus 163 ~~~ 165 (205)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 51
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.8e-34 Score=207.60 Aligned_cols=160 Identities=47% Similarity=0.798 Sum_probs=148.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888899998888888888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++|..+..|+..+.....+++|+++++||.|+.. ...+..+++..++...++.++++||+++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999877767899999999999965 4567788889999999999999999999999999999987
Q ss_pred H
Q 028686 164 D 164 (205)
Q Consensus 164 ~ 164 (205)
.
T Consensus 160 ~ 160 (161)
T cd04113 160 S 160 (161)
T ss_pred h
Confidence 5
No 52
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-34 Score=195.00 Aligned_cols=200 Identities=40% Similarity=0.696 Sum_probs=175.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+|-+++|+-|+|||+|+++|...++-...+.|+|.++....+.+.++.+++++||++|+++|+.....+++.+.+.++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 57889999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++.++++.++..|+...+...+++..|++++||.||.. ++++..++++.|+.++|+.++++||++|.++++.|-...
T Consensus 91 yditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 9999999999999999999999889999999999999954 788999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCC-ccccccCCCCCC----CCCCCCCCCCCcC
Q 028686 163 RDIKQRLADTDSRSEP-STIKINQPDQAG----GVGQAAQKSACCG 203 (205)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~c~~ 203 (205)
+.+.+..++..-..+. ++=-.++++.|+ .+....+|.+|.|
T Consensus 170 kkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 170 KKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 9998877665443222 221223444444 4455667778887
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.6e-34 Score=206.91 Aligned_cols=162 Identities=45% Similarity=0.819 Sum_probs=146.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..+++..+++..+. .++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999876667899999999999965 445677888888888875 7899999999999999999
Q ss_pred HHHH
Q 028686 161 IARD 164 (205)
Q Consensus 161 i~~~ 164 (205)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 54
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6.9e-34 Score=206.76 Aligned_cols=160 Identities=30% Similarity=0.630 Sum_probs=142.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888999998888887778888899999999999999998999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++|..+..|+..+..... ++|+++|+||+|+.+ ..+. .+...++...+++++++||++|.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 99999999999999999988764 799999999999963 2233 3445666777789999999999999999999998
Q ss_pred HHHH
Q 028686 164 DIKQ 167 (205)
Q Consensus 164 ~~~~ 167 (205)
.+.+
T Consensus 157 ~~~~ 160 (166)
T cd00877 157 KLLG 160 (166)
T ss_pred HHHh
Confidence 8865
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.5e-34 Score=205.41 Aligned_cols=159 Identities=38% Similarity=0.672 Sum_probs=144.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC--CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
+||+++|++|+|||||+++|.++.+...+.+|.+.++....+.+. +..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888999988877777776 778899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++|+.+..|+..+.... .++|+++|+||.|+.. +..+..+++..+++..+++++++||+++.|++++|++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999999999999987655 5799999999999965 44567788889999999999999999999999999998
Q ss_pred HHH
Q 028686 162 ARD 164 (205)
Q Consensus 162 ~~~ 164 (205)
...
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 753
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=4.9e-34 Score=206.98 Aligned_cols=161 Identities=36% Similarity=0.686 Sum_probs=142.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|.+|||||||+++++.+.+...+.+|++..+ ...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999988877888887554 466778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|++++++|+.+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..+++..+++++++||++|.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999987654 36799999999999965 344666777888888889999999999999999999998
Q ss_pred HHHH
Q 028686 163 RDIK 166 (205)
Q Consensus 163 ~~~~ 166 (205)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 7653
No 57
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1e-33 Score=206.43 Aligned_cols=161 Identities=42% Similarity=0.700 Sum_probs=145.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 46899999999999999999999999988888999988888888889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 156 (205)
|||++++++|+.+..|...+..... .++|+++|+||.|+. ...+..+++++++..++ .+++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999998876542 468999999999985 45577888999998888 5899999999999999
Q ss_pred HHHHHHHH
Q 028686 157 VFFSIARD 164 (205)
Q Consensus 157 ~~~~i~~~ 164 (205)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999875
No 58
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.4e-33 Score=204.27 Aligned_cols=163 Identities=55% Similarity=0.955 Sum_probs=149.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 68999999999999999999999988888899998888888888888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++++.+.+|+..+..+..+++|+++++||.|+.. ...+..+++..+++..+++++++|++++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999887767899999999999864 3456778888888888999999999999999999999998
Q ss_pred HHHH
Q 028686 164 DIKQ 167 (205)
Q Consensus 164 ~~~~ 167 (205)
.+.+
T Consensus 160 ~~~~ 163 (164)
T smart00175 160 EILK 163 (164)
T ss_pred HHhh
Confidence 8754
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.4e-34 Score=208.40 Aligned_cols=160 Identities=31% Similarity=0.594 Sum_probs=140.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+.+++.+.+...+.||.+ +.+...+.+++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999999888888886 44455667888899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686 83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 149 (205)
||+++++||.++. .|+..+.... +++|+++|+||.|+.+.. ..+..+++.++++.++ ++++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999996 5888887654 579999999999996421 2477889999999998 499999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARD 164 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~ 164 (205)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 60
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.6e-34 Score=211.02 Aligned_cols=162 Identities=31% Similarity=0.531 Sum_probs=141.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
.||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 37999999999999999999999998888888876654 45667888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-----------ccCHHHHHHHHHHhC-CcEEEEcCCC
Q 028686 84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKT 150 (205)
Q Consensus 84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (205)
|+++++||+.+. .|+..+.... ++.|+++|+||+|+.+... .+..++...++...+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5999888654 5799999999999965321 345677788888777 7899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~~~ 167 (205)
|.|++++|.++++.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998874
No 61
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.9e-33 Score=203.47 Aligned_cols=160 Identities=29% Similarity=0.495 Sum_probs=141.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.++.+.+.+.++.+.+++.....+++..+.+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888888887777777888888999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++.++.++..|+..+.... ++.|+++|+||.|+... ..++...++...+++++++||++|.|++++|+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999999997654 56999999999998431 234455667777899999999999999999999998
Q ss_pred HHHHH
Q 028686 164 DIKQR 168 (205)
Q Consensus 164 ~~~~~ 168 (205)
.+.++
T Consensus 156 ~~~~~ 160 (161)
T cd04124 156 LAVSY 160 (161)
T ss_pred HHHhc
Confidence 88764
No 62
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=5.8e-33 Score=209.37 Aligned_cols=165 Identities=47% Similarity=0.757 Sum_probs=144.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|.++.+ ..+.++.+.++....+.+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999999877 45678888888878888888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHH-HHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 83 YDVTDESSFNNIRN-WIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 83 ~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
||++++++|+++.. |...+.... ..+.|+++|+||+|+.. ...+..++...++...+++++++||+++.|++++|++
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999976 666665443 24689999999999965 3456678888888888999999999999999999999
Q ss_pred HHHHHHHHh
Q 028686 161 IARDIKQRL 169 (205)
Q Consensus 161 i~~~~~~~~ 169 (205)
|.+.+....
T Consensus 172 l~~~~~~~~ 180 (211)
T PLN03118 172 LALKIMEVP 180 (211)
T ss_pred HHHHHHhhh
Confidence 999997653
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.5e-33 Score=202.36 Aligned_cols=160 Identities=36% Similarity=0.625 Sum_probs=141.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 36999999999999999999999998888888877444 56677888888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
||++++++|+++..|+..+.+... .+.|+++|+||+|+.+ ..+..+++..+++..+++++++||++|.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887653 5799999999999864 4566778888888889999999999999999999999
Q ss_pred HHHH
Q 028686 162 ARDI 165 (205)
Q Consensus 162 ~~~~ 165 (205)
++.+
T Consensus 158 ~~~~ 161 (162)
T cd04138 158 VREI 161 (162)
T ss_pred HHHh
Confidence 8754
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.6e-33 Score=203.96 Aligned_cols=161 Identities=35% Similarity=0.628 Sum_probs=142.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|.+|+|||||+++++.+.+...+.+|.+ +++...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999998888878775 56667778888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
||++++++|.++..|+..+..... .++|+++|+||+|+.+ ...+..++...++...+++++++||+++.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999877543 5799999999999864 44566677788888888999999999999999999999
Q ss_pred HHHH
Q 028686 162 ARDI 165 (205)
Q Consensus 162 ~~~~ 165 (205)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8654
No 65
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=199.94 Aligned_cols=169 Identities=34% Similarity=0.685 Sum_probs=159.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..|||+++|..=+|||||+-+++.++|.....+|....|..+.+.+.+....+.||||+|+++|..+-+.|++.++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 46899999999999999999999999999888998888888999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||+++++||..+..|..+++...+..+-++||+||+||.+ ++.+..+++..++...|+.|+++||+++.||.++|+.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 99999999999999999999999988899999999999965 78899999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 028686 162 ARDIKQRLAD 171 (205)
Q Consensus 162 ~~~~~~~~~~ 171 (205)
.....++...
T Consensus 171 t~~MiE~~s~ 180 (218)
T KOG0088|consen 171 TAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHhhh
Confidence 8888777643
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.9e-33 Score=203.76 Aligned_cols=161 Identities=41% Similarity=0.700 Sum_probs=141.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|++..+...+.++.+ +.+...+.+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999998877777776 444566778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|++++++|+.+..|+..+.+... .+.|+++|+||+|+.+ ...+..+++..+++..+++++++||+++.|++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 99999999999999988876543 5789999999999965 345667788888888889999999999999999999999
Q ss_pred HHHH
Q 028686 163 RDIK 166 (205)
Q Consensus 163 ~~~~ 166 (205)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 8765
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.7e-33 Score=203.42 Aligned_cols=159 Identities=35% Similarity=0.523 Sum_probs=139.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++++++.+...+.|+.+..+ ...+..++..+.+.+||++|++++..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 6899999999999999999999998888888876444 455666778889999999999999998899999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|++++++|+.+..|+..+..... +++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99999999999999988876532 5799999999999965 3456777888888888899999999999999999999
Q ss_pred HHHH
Q 028686 161 IARD 164 (205)
Q Consensus 161 i~~~ 164 (205)
|+..
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9753
No 68
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.8e-33 Score=201.50 Aligned_cols=160 Identities=40% Similarity=0.703 Sum_probs=146.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
.||+++|++|||||||+++|.+.++...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999998888999999999999999888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++|+.+..|+..+......+.|+++++||+|+.+ ......++...+++..+++++++||+++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999998776555799999999999954 4556778888888888899999999999999999999976
Q ss_pred H
Q 028686 164 D 164 (205)
Q Consensus 164 ~ 164 (205)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 4
No 69
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3.3e-33 Score=208.31 Aligned_cols=156 Identities=29% Similarity=0.614 Sum_probs=141.1
Q ss_pred ECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh
Q 028686 9 FERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE 88 (205)
Q Consensus 9 ~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (205)
+|++|||||||+++|+.+.+...+.+|.+.++....+.++++.+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999998888899999999888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686 89 SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 89 ~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 168 (205)
+||..+..|++.+.+.. +++|+++|+||+|+.. ..+..+. ..+++..++.|+++||++|.||+++|.++++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 5799999999999853 3344444 467788889999999999999999999999998664
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=6.4e-33 Score=202.40 Aligned_cols=162 Identities=46% Similarity=0.822 Sum_probs=146.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-hhhhhhccCCcEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL 81 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i~ 81 (205)
.+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|+++++ .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5899999999999999999999999888888999988888888999999999999999999886 578889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC---CCCHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQV 157 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~ 157 (205)
|||++++++|..+..|++.+.... ..++|+++|+||+|+.. ...+..+++..++...+++|+++||++ +.+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999999999998764 35799999999999865 455677888889988889999999999 8899999
Q ss_pred HHHHHHHH
Q 028686 158 FFSIARDI 165 (205)
Q Consensus 158 ~~~i~~~~ 165 (205)
|..+.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998765
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=9.2e-33 Score=199.90 Aligned_cols=162 Identities=44% Similarity=0.777 Sum_probs=147.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998887888888888888889999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|++.+.....+++|+++++||+|+.. ......++...++...+++++++||++|.|++++|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999887667799999999999864 355677788888888889999999999999999999999
Q ss_pred HHH
Q 028686 163 RDI 165 (205)
Q Consensus 163 ~~~ 165 (205)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 875
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=8.1e-33 Score=200.45 Aligned_cols=160 Identities=32% Similarity=0.590 Sum_probs=141.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC--CCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
+||+++|++|||||||+++|..+ .+...+.+|.+.++....+.++ +..+.+.+||++|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5778889999988887777665 57799999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|||++++++|+.+..|++.+.... .+.|+++|+||+|+.+ ...+..++.+.+...++++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 9999999999999999999988765 5699999999999965 3456666777777888899999999999999999999
Q ss_pred HHHHH
Q 028686 161 IARDI 165 (205)
Q Consensus 161 i~~~~ 165 (205)
+.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98875
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=7.8e-33 Score=200.38 Aligned_cols=161 Identities=39% Similarity=0.609 Sum_probs=141.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|+|||||++++++..+...+.++.+..+ .....+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999988777778776443 45567888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
||++++++|+.+..|+..+.+.. ..++|+++++||+|+.. ...+..+++..+++..+++++++||++|.|++++|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999987753 35799999999999965 34466777888888888999999999999999999999
Q ss_pred HHHH
Q 028686 162 ARDI 165 (205)
Q Consensus 162 ~~~~ 165 (205)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 74
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.2e-33 Score=207.21 Aligned_cols=159 Identities=26% Similarity=0.440 Sum_probs=132.5
Q ss_pred ceEEEEECCCCCcHHHHHH-HHHhCC-----CCCCcccceee-EEEEEE--------EEECCEEEEEEEEeCCChhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~-~l~~~~-----~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 67 (205)
.+||+++|++|||||||+. ++.+.. +...+.||++. +.+... +.+++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 565443 45667888863 333222 25788899999999999975 3
Q ss_pred hhhhhccCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC------------------CCccC
Q 028686 68 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES------------------KRAVP 128 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~------------------~~~~~ 128 (205)
+...+++++|++|+|||+++++||+++. .|++.+.... +++|+++|+||+||.+. ...+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999997 5999887765 57999999999999642 36788
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 129 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
.++++.++++++++|+|+||++|.||+++|+.++++
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999864
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=6.7e-33 Score=206.76 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=139.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hhhhhhccC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYRG 75 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 75 (205)
+||+|+|++|||||||+++|.++.+...+.||.+.+++...+.++++.+.+.+|||||...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999999988888988877777777888988999999999965432 113345789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCC
Q 028686 76 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTN 151 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 151 (205)
+|++|+|||+++++||+.+..|++.+.... ..++|+++|+||+|+.+ ...+..++++.++. ..+++|+++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999999999987764 36799999999999965 34456667777754 56799999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 028686 152 LNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~~ 171 (205)
.|++++|+.+++.+..+-+.
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 160 WHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCHHHHHHHHHHHhhccCCC
Confidence 99999999999888765443
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.5e-32 Score=198.43 Aligned_cols=165 Identities=44% Similarity=0.714 Sum_probs=147.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888889998899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~ 158 (205)
|++++++++++..|.+.+..... .++|+++|+||.|+.+ ......++...++...+ .+++++|+++|.|++++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 99999999999999888765542 3699999999999964 34456788888888887 799999999999999999
Q ss_pred HHHHHHHHHHh
Q 028686 159 FSIARDIKQRL 169 (205)
Q Consensus 159 ~~i~~~~~~~~ 169 (205)
+++.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999887763
No 77
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=198.68 Aligned_cols=169 Identities=46% Similarity=0.841 Sum_probs=154.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC---------CEEEEEEEEeCCChhhhhhhhhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRTITTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~~~ 73 (205)
.|+.+.+|++|+|||+++.++..++|.....+|.|+++..+.+-++ +..+.+++|||+|+++|+++..+++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999998877652 3578999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
++|-+++++||+++.+||.+++.|+..+.-+.. .+.-|++++||+||.+ .+.+..+++..++.++++||||+||-+|.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 999999999999999999999999999987764 6678899999999976 78899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccc
Q 028686 153 NVEQVFFSIARDIKQRLADT 172 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~~~~~ 172 (205)
+|++..+.++..+.++.+.-
T Consensus 168 Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 168 NVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988776543
No 78
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.9e-32 Score=200.39 Aligned_cols=159 Identities=32% Similarity=0.564 Sum_probs=139.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+|++++|++|+|||||++++.++.+...+.+|. .+.+...+.+++..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 689999999999999999999999888888876 4555667788888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCCC
Q 028686 84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKT 150 (205)
Q Consensus 84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (205)
|++++++|+++. .|+..+.... ++.|+++++||.|+... ...+..+++..++...+. +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999985 6888887543 56999999999998642 356778889999999887 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIARD 164 (205)
Q Consensus 151 ~~gi~~~~~~i~~~ 164 (205)
|.|++++|+.++.+
T Consensus 159 ~~~v~~lf~~~~~~ 172 (173)
T cd04130 159 QKNLKEVFDTAILA 172 (173)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998753
No 79
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.3e-32 Score=198.38 Aligned_cols=154 Identities=24% Similarity=0.394 Sum_probs=131.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+.+++.+.+...+.|+ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999999887766555 3344 46788899899999999999975 34667899999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|+++++||+++..|++.+..... +++|+++|+||.|+.. ....+..++++.++++. ++.|+++||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987754 6799999999999853 24667888888898876 489999999999999999999
Q ss_pred HHHH
Q 028686 161 IARD 164 (205)
Q Consensus 161 i~~~ 164 (205)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=2.5e-32 Score=209.68 Aligned_cols=177 Identities=25% Similarity=0.366 Sum_probs=148.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|+++.+...+.+|++ ++..+.+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888886 666777888999999999999999999888888899999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEcCCCCCC
Q 028686 84 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN 153 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~---------~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g 153 (205)
|+++++||+++..|++.+... ...++|+++|+||+|+.. ...+..+++..++.. .++.++++||+++.|
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 999999999999999998654 225799999999999964 345677777777653 357899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCcccccc
Q 028686 154 VEQVFFSIARDIKQRLADTDSRSEPSTIKIN 184 (205)
Q Consensus 154 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 184 (205)
++++|++|.+.+.-.. ....+..++++++
T Consensus 159 I~elf~~L~~~~~~p~--e~~~~~~~~~~~~ 187 (247)
T cd04143 159 LDEMFRALFSLAKLPN--EMSPSLHRKISVQ 187 (247)
T ss_pred HHHHHHHHHHHhcccc--ccCccccceeeee
Confidence 9999999998653222 2334555566554
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=4.7e-32 Score=195.65 Aligned_cols=161 Identities=40% Similarity=0.757 Sum_probs=144.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777777777777777778888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++++.+..|++.+......++|+++++||+|+.. ...+..+++.+++...+.+++++|++++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999887766799999999999864 4556677888888888999999999999999999999987
Q ss_pred HH
Q 028686 164 DI 165 (205)
Q Consensus 164 ~~ 165 (205)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 65
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.8e-32 Score=200.49 Aligned_cols=159 Identities=31% Similarity=0.607 Sum_probs=139.6
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 85 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 85 (205)
|+|+|++|||||||+++|.++.+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999888888876444 45667888889999999999999999999999999999999999
Q ss_pred CChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCCCCC
Q 028686 86 TDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKTNL 152 (205)
Q Consensus 86 ~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (205)
++++||+.+. .|+..+.... ++.|+++|+||+|+... ...+..+++..+++..+. +++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999996 5999887765 57999999999998642 123677888899999986 99999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDIK 166 (205)
Q Consensus 153 gi~~~~~~i~~~~~ 166 (205)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998874
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=5.7e-32 Score=195.43 Aligned_cols=159 Identities=47% Similarity=0.846 Sum_probs=144.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887778888888888777888888899999999999999998999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|++++++|+.+..|++.+..+. ..+.|+++|+||+|+.. .....++...++...+++++++||++|.|++++++.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999998775 36799999999999963 45667888888888899999999999999999999998
Q ss_pred HH
Q 028686 163 RD 164 (205)
Q Consensus 163 ~~ 164 (205)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=4.7e-32 Score=198.32 Aligned_cols=160 Identities=29% Similarity=0.547 Sum_probs=139.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|+|||||+++|.++.+...+.++.+ +.+...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998877778775 344456778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCCC
Q 028686 84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT 150 (205)
Q Consensus 84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (205)
|++++++|+.+. .|.+.+... .++.|+++|+||+|+.+.. ..+..+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999986 588888765 4679999999999986432 25677888899988885 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIARDI 165 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~ 165 (205)
|.|++++|+.+++++
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.1e-31 Score=195.49 Aligned_cols=161 Identities=39% Similarity=0.655 Sum_probs=141.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.++.+...+.++.+.. +...+.+++..+.+.+||+||++++..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999999888888887744 4567778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|++++++++.+..|...+.+.. ..+.|+++++||.|+.+ ...+..++...+++..+ ++++++||+++.|++++|+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999999999887644 35799999999999965 34566777778888877 899999999999999999999
Q ss_pred HHHHH
Q 028686 162 ARDIK 166 (205)
Q Consensus 162 ~~~~~ 166 (205)
...+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 87654
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=1.2e-31 Score=203.25 Aligned_cols=165 Identities=29% Similarity=0.416 Sum_probs=141.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhcc-CCcEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL 81 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 81 (205)
+||+++|++|+|||||+++|..+.+. ..+.++.+.+++...+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 66777776678888888888889999999999983 23344566 8999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..++...++..++++++++||+++.|++++|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999877642 5799999999999965 4567778888888888999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028686 161 IARDIKQRLAD 171 (205)
Q Consensus 161 i~~~~~~~~~~ 171 (205)
+++.+......
T Consensus 158 l~~~~~~~~~~ 168 (221)
T cd04148 158 IVRQIRLRRDS 168 (221)
T ss_pred HHHHHHhhhcc
Confidence 99998754443
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=2e-31 Score=191.20 Aligned_cols=159 Identities=53% Similarity=0.931 Sum_probs=145.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.+..+...+.+|.+.++....+..++..+.+.+||+||+..+..++..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888899999999888888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|++++++++.+..|+..+......+.|+++++||+|+.. ......+++..++...+++++++||+++.|++++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 999999999999999999887756799999999999963 3556778888898888899999999999999999999863
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.3e-32 Score=197.01 Aligned_cols=161 Identities=22% Similarity=0.295 Sum_probs=140.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
.+||+++|++|||||||+++|+++.+. ..+.||.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ll 83 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACL 83 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEE
Confidence 489999999999999999999999998 8889999888877778888888899999999999998889999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++|+.+..|+..+... .++|+++|+||.|+.+. ..+...+..++++.++. .++++||+++.|++++|+.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 84 VYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 99999999999998888876432 36999999999999642 33334556777788876 4799999999999999999
Q ss_pred HHHHHH
Q 028686 161 IARDIK 166 (205)
Q Consensus 161 i~~~~~ 166 (205)
+.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998875
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=8.7e-32 Score=195.39 Aligned_cols=160 Identities=35% Similarity=0.536 Sum_probs=136.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhhhhhccCCcEEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 83 (205)
||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||++. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999888777777765343 45667888889999999999985 3445677889999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC-CCHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEQVFFS 160 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~ 160 (205)
|+++++||+.+..|+..+.... ..++|+++|+||+|+.+ ...+..+++..+++..+.+|+++||+++ .|++++|+.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999999999887754 35799999999999864 3556778888999988999999999999 499999999
Q ss_pred HHHHHH
Q 028686 161 IARDIK 166 (205)
Q Consensus 161 i~~~~~ 166 (205)
+.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 988664
No 90
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.9e-31 Score=191.55 Aligned_cols=162 Identities=46% Similarity=0.818 Sum_probs=144.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|+..+...+..++..+|++++|
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT 86 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999998888777888888888888888988889999999999999999889999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++++.+..|+..+......++|+++|+||.|+.+ ..++..+..+.+......+++++||++|.|++++|+++.
T Consensus 87 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 87 YDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999999877656799999999999865 345666667777777778999999999999999999998
Q ss_pred HHH
Q 028686 163 RDI 165 (205)
Q Consensus 163 ~~~ 165 (205)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 91
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.2e-31 Score=197.37 Aligned_cols=162 Identities=30% Similarity=0.464 Sum_probs=137.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|++|||||||+++|+++.+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999998877777765 4555667788888899999999999999888999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
++++++|+.+..|+..+..... .++|+++|+||+|+.+....+..++...... ..+.+++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998887654 5799999999999865334455555544443 4567899999999999999999999
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
+.+..
T Consensus 160 ~~~~~ 164 (198)
T cd04147 160 RQANL 164 (198)
T ss_pred HHhhc
Confidence 97753
No 92
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=6.2e-31 Score=194.76 Aligned_cols=164 Identities=32% Similarity=0.536 Sum_probs=138.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
.||+|+|++|+|||||+++|..+.+...+.++....+. ..+.+++..+.+.+||++|++.+......++..++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999988887777777664443 45677888889999999999988877777889999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC---------CCccCHHHHHHHHHHhCC-cEEEEcCCCCC
Q 028686 84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES---------KRAVPTSKGQALADEYGI-KFFETSAKTNL 152 (205)
Q Consensus 84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (205)
|++++++|+.+. .|++.+.... +++|+++|+||.|+.+. ...+..++...+++..+. +|+++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999997 5999987655 46999999999998542 234556778888999984 89999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028686 153 NVEQVFFSIARDIKQRL 169 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~~ 169 (205)
|++++|+++.+.+...+
T Consensus 160 ~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 160 GVDDVFEAATRAALLVR 176 (187)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999998886543
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=1.3e-30 Score=188.51 Aligned_cols=162 Identities=39% Similarity=0.627 Sum_probs=141.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|....+...+.++.+.. +.....+++..+.+.+||+||+..+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999998877777777643 4456678888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|++++++|..+..|+..+..... .++|+++|+||+|+.+ ......++...++..++++++++||+++.|++++|+++.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887643 5799999999999965 234566777778888889999999999999999999999
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 87753
No 94
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.98 E-value=5.6e-32 Score=196.61 Aligned_cols=168 Identities=33% Similarity=0.573 Sum_probs=152.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 79 (205)
+..+|++++|+.++|||+|+..+..+.|+..|.||.. +-+...+.++ ++.+.+.+|||+|+++|+.+++..+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3579999999999999999999999999999999998 6666778885 9999999999999999999998999999999
Q ss_pred EEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEE
Q 028686 80 LLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET 146 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ 146 (205)
++||++.+++||+++.. |+.++..++ +++|+++||+|.||+++ ...+..++..+++++.| +.|+||
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 99999999999999765 999999888 78999999999999743 23578899999999999 689999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 147 SAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
||+++.|+.++|+..++.+....+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999999987543
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.98 E-value=1.3e-30 Score=190.81 Aligned_cols=161 Identities=32% Similarity=0.586 Sum_probs=136.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
+.||+++|++|||||||+++|.++.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 358999999999999999999999988888888875554 4567888889999999999999998888899999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686 83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (205)
||++++++|+++. .|...+.... .++|+++|+||.|+.+.. ..+..++.++++...+. +++++||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999986 4888877654 579999999999986421 23445677888887774 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARDI 165 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~~ 165 (205)
+|.|++++|+++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=3.7e-31 Score=192.73 Aligned_cols=154 Identities=19% Similarity=0.344 Sum_probs=125.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|..+.+. .+.||.+.++. .+.. ..+.+.+||++|+++++.++..+++++|++++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999887764 45677776554 2333 45889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-----hCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++.+|+++..|+..+.... .+++|++||+||+|+.+ .+..+++..+... ..++++++||++|.|++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999988777665432 35799999999999853 2456666665431 23578999999999999
Q ss_pred HHHHHHHH
Q 028686 156 QVFFSIAR 163 (205)
Q Consensus 156 ~~~~~i~~ 163 (205)
++|+||.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=1.3e-30 Score=192.37 Aligned_cols=169 Identities=21% Similarity=0.328 Sum_probs=135.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
..+||+++|++|||||||++++....+... .||.+.++....+.+ ++..+.+.+||++|++++..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 578999999999999999999998887544 677776665555544 446688999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH--Hh----CCcEEEEcCCCCCC
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD--EY----GIKFFETSAKTNLN 153 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~--~~----~~~~~~~Sa~~~~g 153 (205)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ....+++..+.. .. +++++++||+++.|
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEG 157 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCC
Confidence 9999999999999988888876543 25799999999999853 233444544432 11 24688999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 028686 154 VEQVFFSIARDIKQRLADTDS 174 (205)
Q Consensus 154 i~~~~~~i~~~~~~~~~~~~~ 174 (205)
++++|++|.+.+.+.+....+
T Consensus 158 i~~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 158 LQEGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999776655433
No 98
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.98 E-value=1.9e-30 Score=186.87 Aligned_cols=158 Identities=40% Similarity=0.684 Sum_probs=141.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|++|||||||+++|++..+...+.++.+ +.......+++..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999888777777776 5566677778778899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
+++++++.++..|+..+..... .+.|+++++||+|+.. ...+..+++..++...+.+++++|++++.|++++|++|.+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 9999999999999999987764 5799999999999965 4566778888888888899999999999999999999987
Q ss_pred H
Q 028686 164 D 164 (205)
Q Consensus 164 ~ 164 (205)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=9.5e-31 Score=192.72 Aligned_cols=159 Identities=18% Similarity=0.325 Sum_probs=125.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|+++||||||+++|..+.+. .+.||.+.++. .+.. ..+.+++||+||+++++.++..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999987775 46788876543 3444 34789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-----CCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~ 155 (205)
|||+++++++..+..|+..+... ..+++|++|++||+|+++. ...+++.+...-. .+.++++||++|+|++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999999988877776532 2257999999999999642 3334433332211 1246689999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQR 168 (205)
Q Consensus 156 ~~~~~i~~~~~~~ 168 (205)
++|+||.+.+..+
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 100
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=192.20 Aligned_cols=167 Identities=39% Similarity=0.625 Sum_probs=154.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
...||+++|.+|+|||+|+.+|....|...|.||+. +.+.+.+.+++..+.+.|+||+|++++..+...++.+++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 467999999999999999999999999999999998 8888999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
||+++++.||+.+..+++.|.+... ..+|+++||||+|+.. .+.+..++++.++..++++|+|+||+.+.+++++|..
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 9999999999999999999955443 5689999999999975 4889999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028686 161 IARDIKQRLA 170 (205)
Q Consensus 161 i~~~~~~~~~ 170 (205)
+.+.+.....
T Consensus 160 L~r~~~~~~~ 169 (196)
T KOG0395|consen 160 LVREIRLPRE 169 (196)
T ss_pred HHHHHHhhhc
Confidence 9998877433
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=7e-30 Score=187.87 Aligned_cols=164 Identities=35% Similarity=0.549 Sum_probs=141.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
.||+++|.+|+|||||+++|.+..+...+.|+.+..+ ...+.+++..+.+.+||+||++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999988777777776444 355667777888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|+++.++++.+..|+..+.+.. ..+.|+++++||+|+.. ...+..++...++..++.+++++||+++.|++++|+++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999988887654 35789999999999964 344566677788888889999999999999999999999
Q ss_pred HHHHHHh
Q 028686 163 RDIKQRL 169 (205)
Q Consensus 163 ~~~~~~~ 169 (205)
+.+....
T Consensus 160 ~~~~~~~ 166 (180)
T cd04137 160 EEIEKVE 166 (180)
T ss_pred HHHHHhc
Confidence 9887654
No 102
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.5e-32 Score=184.41 Aligned_cols=160 Identities=49% Similarity=0.909 Sum_probs=149.4
Q ss_pred EECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC
Q 028686 8 YFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 86 (205)
Q Consensus 8 v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (205)
++|++++|||+|+-++..+-+- ....+|.|+++..+.++.+++.+++++|||+|+++|++....|++++|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999998887753 567899999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 87 DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 87 ~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+..||++.+.|+.+|..+....+.+.+++||+|+.. ++.+..++.+++++.+++|+.|+||++|.+++-.|-.|.+.+.
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 999999999999999999888899999999999965 5778889999999999999999999999999999999998887
Q ss_pred HH
Q 028686 167 QR 168 (205)
Q Consensus 167 ~~ 168 (205)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 64
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.2e-30 Score=188.83 Aligned_cols=156 Identities=19% Similarity=0.346 Sum_probs=128.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|.++||||||+++|.+..+.. +.||.+.++. .+.. ..+.+.+||+||+..+..++..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999987654 6777775554 3334 34789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC------CcEEEEcCCCCCCHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEQV 157 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~ 157 (205)
++++++|+++..|+..+.+.. ..+.|++||+||+|+.+ .+..++++.++...+ +.++++||++|.|++++
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 999999999999988887543 24589999999999953 356677777664322 36789999999999999
Q ss_pred HHHHHHHHHHH
Q 028686 158 FFSIARDIKQR 168 (205)
Q Consensus 158 ~~~i~~~~~~~ 168 (205)
|+||.+.+.+.
T Consensus 153 f~~l~~~~~~~ 163 (169)
T cd04158 153 LDWLSRQLVAA 163 (169)
T ss_pred HHHHHHHHhhc
Confidence 99998876654
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.4e-30 Score=188.91 Aligned_cols=156 Identities=17% Similarity=0.332 Sum_probs=124.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|.+|||||||+++|..+.+. .+.||.+.++.. +.. ..+.+.+||+||++.+..++..+++++|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999887764 467888766543 333 34789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++++.+..|+..+.... .+++|++||+||.|+.+. ...+++..... ...+.++++||++|.|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA---MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC---CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999988888775432 356899999999999542 23333333221 123457789999999999
Q ss_pred HHHHHHHHHH
Q 028686 156 QVFFSIARDI 165 (205)
Q Consensus 156 ~~~~~i~~~~ 165 (205)
++|+||.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999997764
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=2.2e-30 Score=187.05 Aligned_cols=152 Identities=19% Similarity=0.371 Sum_probs=120.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|.+|||||||++++..+.+. .+.||.+.++. .+.. ..+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999888776 46788876553 2333 3588999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHH----HHhCCcEEEEcCCCCCCHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALA----DEYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~~ 157 (205)
|++++++|+++..|+..+... ...+.|++|++||.|+.+. ...+++. .+. ...++.++++||++|.|++++
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 999999999998877776543 2246899999999999542 2233332 221 122356789999999999999
Q ss_pred HHHHHH
Q 028686 158 FFSIAR 163 (205)
Q Consensus 158 ~~~i~~ 163 (205)
|++|.+
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999864
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.4e-29 Score=184.49 Aligned_cols=158 Identities=34% Similarity=0.636 Sum_probs=134.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999998777777765 344455677788899999999999988888888889999999999
Q ss_pred eCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCCC----------ccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686 84 DVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKR----------AVPTSKGQALADEYGI-KFFETSAKTN 151 (205)
Q Consensus 84 d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (205)
|++++++|..... |+..+.... .+.|+++|+||+|+.+... .+..++...+....+. +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 9999999988754 777776654 4799999999999875432 3456778888888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 028686 152 LNVEQVFFSIAR 163 (205)
Q Consensus 152 ~gi~~~~~~i~~ 163 (205)
.|++++|+++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 107
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=2.4e-29 Score=187.53 Aligned_cols=149 Identities=18% Similarity=0.319 Sum_probs=127.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-----CEEEEEEEEeCCChhhhhhhhhhhccCCcE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG 78 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 78 (205)
+||+++|++|+|||||+++|.++.+...+.+|++.++..+.+.++ +..+.+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988899999988877777663 567899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhc-------------------CCCCcEEEEEeCCCCCCCCCccCHH----HHHHH
Q 028686 79 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKVLVGNKADMDESKRAVPTS----KGQAL 135 (205)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~piiiv~nK~Dl~~~~~~~~~~----~~~~~ 135 (205)
+|+|||+++++||+++..|+..+.... ..++|++||+||.|+.+. ..+..+ ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence 999999999999999999999997642 246999999999999652 333333 24567
Q ss_pred HHHhCCcEEEEcCCCCCC
Q 028686 136 ADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 136 ~~~~~~~~~~~Sa~~~~g 153 (205)
+++.+++.++.++.+...
T Consensus 160 a~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 160 AEQGNAEEINLNCTNGRL 177 (202)
T ss_pred HHhcCCceEEEecCCccc
Confidence 889999999999887544
No 108
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=9.8e-31 Score=189.81 Aligned_cols=152 Identities=20% Similarity=0.313 Sum_probs=125.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 85 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 85 (205)
|+++|++|||||||+++|.++.+...+.||.+.+. ..+++..+.+.+||++|+++++.++..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999999888788888888543 23344568899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCH----HHHHHHHHHhCCcEEEEcCCC------CCCHH
Q 028686 86 TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT----SKGQALADEYGIKFFETSAKT------NLNVE 155 (205)
Q Consensus 86 ~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~gi~ 155 (205)
+++++|..+..|+..+.... +++|+++|+||.|+... ..+.. .++..++++.++.++++||++ ++||+
T Consensus 78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAA-RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCC-CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 99999999999988886544 67999999999998653 22111 123455666678899999988 99999
Q ss_pred HHHHHHHH
Q 028686 156 QVFFSIAR 163 (205)
Q Consensus 156 ~~~~~i~~ 163 (205)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998863
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=4e-29 Score=188.97 Aligned_cols=164 Identities=30% Similarity=0.586 Sum_probs=144.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
+..+||+++|++|||||||+++++.+.+...+.+|.+.++....+..++..+.+.+||++|++++..++..++..+++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999999888889999998888888888888999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|||++++++|..+..|+..+.... .++|+++++||.|+.+ ..+.. +...++...++.++++||++|.|++++|.+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 162 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLW 162 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999998665 5699999999999853 22333 334567777899999999999999999999
Q ss_pred HHHHHHHH
Q 028686 161 IARDIKQR 168 (205)
Q Consensus 161 i~~~~~~~ 168 (205)
|.+.+...
T Consensus 163 ia~~l~~~ 170 (215)
T PTZ00132 163 LARRLTND 170 (215)
T ss_pred HHHHHhhc
Confidence 99988754
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.4e-29 Score=186.70 Aligned_cols=158 Identities=21% Similarity=0.364 Sum_probs=124.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||++++..+.+.. +.||.+.++. .+.. ..+.+.+||++|++.++.++..+++++|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999998887754 5678776554 3344 347899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (205)
||++++++|+++..++..+... ...+.|++||+||.|+.+. ...+++..... ...+.++++||++|.|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999999988877766433 2246899999999998542 23333322211 1224567999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 157 VFFSIARDIKQR 168 (205)
Q Consensus 157 ~~~~i~~~~~~~ 168 (205)
+|++|.+.+.+.
T Consensus 169 ~~~~l~~~i~~~ 180 (182)
T PTZ00133 169 GLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHh
Confidence 999999887664
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.7e-29 Score=182.51 Aligned_cols=161 Identities=26% Similarity=0.391 Sum_probs=126.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|.++.+...+.++.. ++ .....+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 5899999999999999999999988665444322 22 344456677789999999999988877788889999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-CHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHH
Q 028686 84 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADEYG--IKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 84 d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~ 159 (205)
|++++++|+.+. .|++.+.... .+.|+++|+||+|+.+..... ..+++..++..+. .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5888887654 479999999999996532211 2334444444443 3799999999999999999
Q ss_pred HHHHHHHH
Q 028686 160 SIARDIKQ 167 (205)
Q Consensus 160 ~i~~~~~~ 167 (205)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887753
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=2.3e-29 Score=184.13 Aligned_cols=154 Identities=19% Similarity=0.318 Sum_probs=124.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|||||||+++|.+..+ ..+.+|.+. ....+.+++ +.+.+||+||++.++.++..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999998754 345677663 334445553 779999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++|.++..|+..+... ...+.|+++|+||+|+.+. ...+++..+.. ..+++++++||++|.|++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 99999999999998888877543 2367999999999999642 24555555543 235789999999999999
Q ss_pred HHHHHHHH
Q 028686 156 QVFFSIAR 163 (205)
Q Consensus 156 ~~~~~i~~ 163 (205)
++|+++..
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 113
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=7.7e-29 Score=181.47 Aligned_cols=143 Identities=40% Similarity=0.683 Sum_probs=129.2
Q ss_pred CCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc
Q 028686 26 GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA 105 (205)
Q Consensus 26 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 105 (205)
+.|.+.+.||++.++..+.+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677889999999998989999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 106 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 106 ~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
.+++|++||+||+||.+ ...+..+++..++..+++.++++||++|.||+++|++|++.+.+..
T Consensus 83 ~~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 56799999999999964 3557788888899888999999999999999999999999886644
No 114
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=9.1e-30 Score=183.91 Aligned_cols=152 Identities=17% Similarity=0.312 Sum_probs=119.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC-CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+|+++|++|||||||+++|.+.. +...+.||.+.... .+.. ..+.+.+||+||++++..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999876 35567788774433 2233 3578999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++...... ...+.++++||++|.|++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999999888888876542 2579999999999986422 2233322211 123468999999999999
Q ss_pred HHHHHHHH
Q 028686 156 QVFFSIAR 163 (205)
Q Consensus 156 ~~~~~i~~ 163 (205)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=1.4e-28 Score=180.16 Aligned_cols=154 Identities=22% Similarity=0.294 Sum_probs=122.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|+|||||+++|..+.+.. +.||.+.++. .+.++ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999888764 5677775543 33343 4789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHH-HH----HHhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQA-LA----DEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~ 155 (205)
|+|+++++++.....|+..+.... ..++|+++++||+|+.+ ....+++.. +. ...+++++++||++|.|++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~---~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG---AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC---CCCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 999999999998888777765443 25699999999999854 223344322 21 2334679999999999999
Q ss_pred HHHHHHHH
Q 028686 156 QVFFSIAR 163 (205)
Q Consensus 156 ~~~~~i~~ 163 (205)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999864
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=1.1e-28 Score=179.52 Aligned_cols=151 Identities=20% Similarity=0.313 Sum_probs=121.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
+|+++|++|||||||+++|.+. +...+.||.+.. ...+... .+.+.+||+||+..++.++..+++++|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4799999999999999999977 666778888754 3344554 4789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHH------HHHHHHhC--CcEEEEcCCCC----
Q 028686 85 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKG------QALADEYG--IKFFETSAKTN---- 151 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~------~~~~~~~~--~~~~~~Sa~~~---- 151 (205)
++++++++.+..|+..+.+... .++|+++|+||.|+.+.. ...++ ..++.+.+ +.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL---LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC---CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 9999999999999998876532 579999999999996532 12222 22232223 56778999998
Q ss_pred --CCHHHHHHHHHH
Q 028686 152 --LNVEQVFFSIAR 163 (205)
Q Consensus 152 --~gi~~~~~~i~~ 163 (205)
.|+++.|+||.+
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999975
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.8e-28 Score=176.96 Aligned_cols=152 Identities=24% Similarity=0.423 Sum_probs=120.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
+|+++|++|||||||+++|.+..+.. +.||.+.++. .+... ..+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999988754 4567664433 33333 35789999999999999989999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH------HHHhCCcEEEEcCCCCCCHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~~ 157 (205)
++++.++..+..|+..+.+.. ..+.|+++|+||+|+... ...+++... +...+++++++||++|+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999999999988888876543 257999999999998532 223333322 2223457999999999999999
Q ss_pred HHHHHH
Q 028686 158 FFSIAR 163 (205)
Q Consensus 158 ~~~i~~ 163 (205)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=1.5e-28 Score=177.15 Aligned_cols=151 Identities=22% Similarity=0.345 Sum_probs=116.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|++++|||||+++|..+.+. .+.||.+.++. .+.. ..+.+.+||+||++.+..++..++..+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999887765 34566665443 3333 34789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~ 158 (205)
++++.++.....++..+.+ ....+.|+++|+||+|+.+.. ...++..... ..+.+++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 9999888877666655433 223569999999999985421 2233322111 123579999999999999999
Q ss_pred HHHHH
Q 028686 159 FSIAR 163 (205)
Q Consensus 159 ~~i~~ 163 (205)
++|.+
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99875
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=5e-28 Score=175.76 Aligned_cols=152 Identities=20% Similarity=0.353 Sum_probs=120.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 78 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 78 (205)
+|+++|++|+|||||+++|.+... ...+.+|.+.++. .+.++ ...+.+||+||++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 2344566665543 34444 4789999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------hCCcEEEEcCCC
Q 028686 79 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGIKFFETSAKT 150 (205)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 150 (205)
+++|+|+++++++.....|+..+.+.. ..++|+++++||+|+.+ ....+++..+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD---ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc---CCCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999999999888888876543 25799999999999854 2344555554432 246899999999
Q ss_pred CCCHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIAR 163 (205)
Q Consensus 151 ~~gi~~~~~~i~~ 163 (205)
|.|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999865
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1e-27 Score=177.83 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=125.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
...+|+++|++|||||||+++|.+..+. .+.||.+... ..+.+++ +.+.+||+||+..+..++..+++.++++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999988764 4566666433 3445554 678999999999998999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----------------hCCcEE
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE----------------YGIKFF 144 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 144 (205)
|+|+++++++.....|+..+.... ..+.|+++++||+|+.. .+..++++.+... ..+.++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 999999999998888888876543 25699999999999853 3556666666542 225689
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q 028686 145 ETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~ 164 (205)
++||++|+|++++|+||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999764
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=5.7e-27 Score=183.12 Aligned_cols=139 Identities=22% Similarity=0.431 Sum_probs=121.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-------------CEEEEEEEEeCCChhhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQERFRTI 68 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~ 68 (205)
..+||+|+|+.|||||||+++|.++.+...+.+|++.++..+.+.++ ++.+.+.|||++|+++|+.+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 46899999999999999999999999988899999988877777664 25688999999999999999
Q ss_pred hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC------------CCCcEEEEEeCCCCCCCC--Cc---cCHHH
Q 028686 69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKVLVGNKADMDESK--RA---VPTSK 131 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piiiv~nK~Dl~~~~--~~---~~~~~ 131 (205)
+..++++++++|+|||++++++|+++..|++.+..... .++|++||+||+||.... .. +..++
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~ 179 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA 179 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence 99999999999999999999999999999999987631 258999999999996532 12 36889
Q ss_pred HHHHHHHhC
Q 028686 132 GQALADEYG 140 (205)
Q Consensus 132 ~~~~~~~~~ 140 (205)
++.|+++++
T Consensus 180 a~~~A~~~g 188 (334)
T PLN00023 180 ARQWVEKQG 188 (334)
T ss_pred HHHHHHHcC
Confidence 999999887
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.2e-27 Score=173.87 Aligned_cols=156 Identities=26% Similarity=0.457 Sum_probs=127.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|.+||||||++++|..+... ...||.|.. ...+.+++ +.+.+||++|+..++.+|+.++.++|++||
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence 3589999999999999999999887643 366777744 44556665 678999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH------HhCCcEEEEcCCCCCCH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNV 154 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 154 (205)
|+|.++++.+.+....+..+.... ..++|++|++||.|+.+ ....+++..... ...+.++.+||.+|+|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~---~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD---AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT---SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccC---cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 999999999998888777765542 36799999999999854 345566665433 22366899999999999
Q ss_pred HHHHHHHHHHH
Q 028686 155 EQVFFSIARDI 165 (205)
Q Consensus 155 ~~~~~~i~~~~ 165 (205)
.+.|+||.+++
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=1.2e-27 Score=172.29 Aligned_cols=151 Identities=21% Similarity=0.357 Sum_probs=121.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
||+++|.+|||||||++++++..+ ..+.++.+.... .+.+. .+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999999873 445666664443 34444 4779999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHHHH
Q 028686 85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~ 158 (205)
+++++++..+..|+..+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 999999999988888876643 3679999999999986422 2333333322 234689999999999999999
Q ss_pred HHHHH
Q 028686 159 FSIAR 163 (205)
Q Consensus 159 ~~i~~ 163 (205)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99875
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=5.1e-27 Score=173.35 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=121.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|.+|||||||+++|.++.+. .+.||.+... ..+.+++ +.+.+||+||+..++.++..++.++|++++|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 489999999999999999999988754 3345555433 2334443 7799999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH------------hCCcEEEEcCC
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~ 149 (205)
+|+++++++.....++..+.... ..+.|+++|+||.|++. .+..+++.+.... ....++++||+
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~ 168 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVV 168 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeecc
Confidence 99999999999888877775432 25789999999999853 3455555544321 12469999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARD 164 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~ 164 (205)
++.|++++++||...
T Consensus 169 ~~~g~~~~~~wl~~~ 183 (184)
T smart00178 169 RRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999764
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=7.3e-29 Score=174.55 Aligned_cols=167 Identities=34% Similarity=0.591 Sum_probs=156.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.||++++|..++||||+++++|.+-|...+..|++.++....+.+++.++...+||++|+++++.+..+|+++|++.++|
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV 99 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV 99 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence 58999999999999999999999999999999999999988888888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|+-+|+.||+.+..|++.+.... ..+|.++|-||+||.+ +..+...+++.+++.....++.+|++...|+.++|.+|+
T Consensus 100 FSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 100 FSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999998877 4699999999999987 566889999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 028686 163 RDIKQRLAD 171 (205)
Q Consensus 163 ~~~~~~~~~ 171 (205)
+.+.++...
T Consensus 178 eK~~q~~kq 186 (246)
T KOG4252|consen 178 EKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHH
Confidence 998776544
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=4.3e-27 Score=168.73 Aligned_cols=151 Identities=21% Similarity=0.418 Sum_probs=121.6
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 85 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 85 (205)
|+++|++|||||||+++|.+.++...+.|+.+.++.. +...+ +.+.+||+||++.+..++..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999999999999999888888888866553 33433 7899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHHHHHH
Q 028686 86 TDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 86 ~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
++++++.....|+..+.... ..++|+++|+||+|+.+.. ..++..... ....++++++|++++.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99999988888777765432 2578999999999985421 122222211 12236889999999999999999
Q ss_pred HHHH
Q 028686 160 SIAR 163 (205)
Q Consensus 160 ~i~~ 163 (205)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 127
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.95 E-value=5e-26 Score=157.94 Aligned_cols=158 Identities=20% Similarity=0.351 Sum_probs=130.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|..||||||++++|.+.. .....||.+ |..+++.+++ +.+.+||.+|+...++.|..|+..+|++|+|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 5899999999999999999998877 455678887 5555555544 8899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHH------HHHHHHhCCcEEEEcCCCCCCHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKG------QALADEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~ 155 (205)
+|.+++..+++..+.+..+... .-.+.|++|++||.|++.+ +..+++ .++++...++++.||+.+|+++.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~---l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA---LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc---cCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 9999999998887766666443 2367899999999999632 333333 44556667999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQR 168 (205)
Q Consensus 156 ~~~~~i~~~~~~~ 168 (205)
+.++|+...+..+
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988774
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=7.7e-26 Score=166.10 Aligned_cols=154 Identities=27% Similarity=0.349 Sum_probs=114.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC-------CCCCcccc------eeeEEEEEEEE--E---CCEEEEEEEEeCCChhhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIRTIE--L---DGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t------~~~~~~~~~~~--~---~~~~~~~~i~D~~g~~~~~ 66 (205)
+|+++|.+++|||||+++|++.. +...+.++ .+.++...... + ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 11122221 23333333222 2 5667889999999999999
Q ss_pred hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---cE
Q 028686 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---KF 143 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~ 143 (205)
.++..+++.+|++|+|||+++..++.....|..... .++|+++|+||+|+.+.. ..+...++++.+++ .+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD---PERVKQQIEDVLGLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCCCcccE
Confidence 999999999999999999998776666655543321 468999999999985421 12334455666665 48
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q 028686 144 FETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 144 ~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
+++||++|.|++++|+++.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999999999998764
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=2.3e-25 Score=159.31 Aligned_cols=158 Identities=32% Similarity=0.429 Sum_probs=130.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|.+|+|||||+++|....+...+.++.+.++....+..++..+.+.+||+||+..+..++..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999987778888888888877777877778899999999999998898889999999999
Q ss_pred EeCCCh-hHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 83 YDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 83 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|+... .++.+.. .|...+......+.|+++++||.|+.... ...+....+......+++++||.++.|++++|++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 999887 7777766 67777766554479999999999986422 3333334444444578999999999999999998
Q ss_pred HH
Q 028686 161 IA 162 (205)
Q Consensus 161 i~ 162 (205)
|-
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 63
No 130
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=6e-25 Score=166.42 Aligned_cols=170 Identities=38% Similarity=0.536 Sum_probs=139.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|||||||+++|.+..+...+.+|.+..+........+..+.+.+||++|+++++.++..++..+++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 44589999999999999999999999999999999888888777776666889999999999999999999999999999
Q ss_pred EEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-----------ccCHHHHHHHHHHh---CCcEEE
Q 028686 81 LVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEY---GIKFFE 145 (205)
Q Consensus 81 ~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~ 145 (205)
+|||..+ ..+++....|...+......+.|+++++||+|+..... .............. ...+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 9999999 55566667799999887755799999999999976431 22222222222222 334899
Q ss_pred EcCC--CCCCHHHHHHHHHHHHHHHhc
Q 028686 146 TSAK--TNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 146 ~Sa~--~~~gi~~~~~~i~~~~~~~~~ 170 (205)
+|++ ++.++.++|..+.+.+.....
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 9999 999999999999999975543
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=2.6e-25 Score=162.38 Aligned_cols=151 Identities=19% Similarity=0.330 Sum_probs=117.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|||||||+++|.+..+. .+.++.+.++ ..+..++ ..+.+||++|+..+...+..+++.+|++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999987653 3456666333 3444554 678999999999888888899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--------CcEEEEcCCCCC
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--------IKFFETSAKTNL 152 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~ 152 (205)
|+|+++..++.....|+..+.... ..++|+++++||.|+.+. ...+++ ....+ .+++++||++|.
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA---APAEEI---AEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC---CCHHHH---HHHcCCcccCCCeEEEEEeECCCCC
Confidence 999999999988887776665432 356999999999998542 112222 22232 247899999999
Q ss_pred CHHHHHHHHHH
Q 028686 153 NVEQVFFSIAR 163 (205)
Q Consensus 153 gi~~~~~~i~~ 163 (205)
|++++|+||.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 132
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.4e-25 Score=163.10 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=108.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh---------hhhhhhccC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYYRG 75 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 75 (205)
+|+++|.+|+|||||+++|.+..+.....+....+.....+.. ..+.+.+|||||..... .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7899999999999999999998764322221112222222222 34789999999974211 001111223
Q ss_pred CcEEEEEEeCCChhHH--HHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 76 AMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
+|++++|+|+++++++ +....|++.+.... .+.|+++|+||+|+.+. ..+ .+...+....+++++++||++|.|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~-~~~--~~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF-EDL--SEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCch-hhH--HHHHHhhhhccCceEEEEecccCC
Confidence 6899999999987653 66667888886554 47999999999998642 222 224455555568999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDI 165 (205)
Q Consensus 154 i~~~~~~i~~~~ 165 (205)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 133
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.7e-26 Score=160.24 Aligned_cols=159 Identities=19% Similarity=0.365 Sum_probs=131.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
+..+|+++|..++||||++++|..+++... .||+|... ..+.+. ++.+.+||.+|+++++.+|..|+++.+++||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 458999999999999999999999987655 89998444 444454 5889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|+|.+|++-+.++...+..+..+.. .+.|+++.+||.|++++ .+..++..... ...+.+..++|.+|+|+.
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a---ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA---LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc---CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 9999999999999887777766654 67999999999999653 34444443322 233678889999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQR 168 (205)
Q Consensus 156 ~~~~~i~~~~~~~ 168 (205)
+.++|+...+..+
T Consensus 168 egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 168 EGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988653
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=3e-25 Score=161.53 Aligned_cols=157 Identities=16% Similarity=0.138 Sum_probs=110.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----hhhhhhhhh---ccCCc
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAY---YRGAM 77 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~---~~~~d 77 (205)
+|+++|.+|||||||+++|.+........+....+.....+.+++. ..+.+|||||.. ..+.+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976542111111111111112233332 478999999963 222233333 34699
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEcCCCCCC
Q 028686 78 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN 153 (205)
Q Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~g 153 (205)
++++|+|++++ ++++.+..|.+.+..... .+.|+++|+||+|+.+. . ...+....+... .+.+++++||+++.|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE-E-ELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc-h-hhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999999 799999999998876542 36899999999998642 2 233445555555 367899999999999
Q ss_pred HHHHHHHHHHH
Q 028686 154 VEQVFFSIARD 164 (205)
Q Consensus 154 i~~~~~~i~~~ 164 (205)
++++|+++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=8.4e-25 Score=174.29 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=119.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhh---hhhccCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTIT---TAYYRGA 76 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~ 76 (205)
-.|+|+|.||||||||+++|.+.+......|.++.....-.+.+. ....+.+||+||..+ ...+. ...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 468999999999999999999876443322322223333334442 124589999999642 11232 3345679
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 77 MGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
+++++|+|+++.++++++..|.+++..+.. .+.|+++|+||+|+.+. .....+..+.+....+.+++++||+++.|+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 999999999998889999999999987643 46899999999999642 223334455555666789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 155 EQVFFSIARDIKQR 168 (205)
Q Consensus 155 ~~~~~~i~~~~~~~ 168 (205)
++++++|.+.+.++
T Consensus 317 ~eL~~~L~~~l~~~ 330 (335)
T PRK12299 317 DELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=6.4e-25 Score=158.66 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=106.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
+.|+++|.+|||||||+++|.+.. +...+.++.+.+.....+.+.. ...+.+|||||++++......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999998643 3333334444444444455542 357999999999988777777888999999
Q ss_pred EEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHH---hCCcEEEEcCCCCCC
Q 028686 81 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADE---YGIKFFETSAKTNLN 153 (205)
Q Consensus 81 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~g 153 (205)
+|+|+++ +++++.+. .+... ...|+++++||+|+.+.. .....++..++... .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 44444332 22211 124999999999996421 11122344444443 357999999999999
Q ss_pred HHHHHHHHHH
Q 028686 154 VEQVFFSIAR 163 (205)
Q Consensus 154 i~~~~~~i~~ 163 (205)
++++|+++.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=2.4e-25 Score=157.65 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=101.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-----hhhhhhhhhccCCcEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 79 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~ 79 (205)
||+++|++|||||||+++|.+..+ .+.+|.+.++. -.+||+||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN------------DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc------------CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 799999999999999999998765 23444433222 1689999973 2444433 47899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHH
Q 028686 80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVF 158 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~ 158 (205)
++|||+++++++.. ..|.+.+ ..|+++|+||+|+.+ .....++..++++..+. +++++||+++.|++++|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999998765 2343322 249999999999864 33456677788877775 89999999999999999
Q ss_pred HHHH
Q 028686 159 FSIA 162 (205)
Q Consensus 159 ~~i~ 162 (205)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=7.2e-25 Score=164.40 Aligned_cols=154 Identities=19% Similarity=0.148 Sum_probs=111.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh---------hhhhhhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 73 (205)
.++|+++|++|||||||+++|.+..+.....+..+.+.....+.+.+. ..+.+|||||..+ +.... ..+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 379999999999999999999998743322222222333334444432 2689999999732 22221 235
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
..+|++++|+|+++++++.....|.+.+......+.|+++|+||+|+.+... ........+.+++++||+++.|
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~~~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------LEERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------HHHHhhcCCCceEEEEcCCCCC
Confidence 6899999999999999888887788877665545689999999999854211 1133444567899999999999
Q ss_pred HHHHHHHHHHH
Q 028686 154 VEQVFFSIARD 164 (205)
Q Consensus 154 i~~~~~~i~~~ 164 (205)
+++++++|.+.
T Consensus 193 i~~l~~~L~~~ 203 (204)
T cd01878 193 LDELLEAIEEL 203 (204)
T ss_pred HHHHHHHHHhh
Confidence 99999999765
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=2.3e-24 Score=156.47 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=110.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
.|+++|.+|+|||||+++|....+.....++...+.....+..+ +....+.+|||||+..+..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988766544444444444444443 13467899999999998888888899999999999
Q ss_pred eCCCh---hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH------HhCCcEEEEcCCCCCCH
Q 028686 84 DVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNV 154 (205)
Q Consensus 84 d~~~~---~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 154 (205)
|+++. ++++.+ ..+.. .+.|+++|+||+|+.........+....+.. ...++++++|++++.|+
T Consensus 82 d~~~~~~~~~~~~~----~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTIEAI----KLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHHHHH----HHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 99884 333322 22222 4689999999999864221111112222211 11368999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 155 EQVFFSIARDIK 166 (205)
Q Consensus 155 ~~~~~~i~~~~~ 166 (205)
+++++++.+...
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T cd01887 155 DDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=9e-24 Score=149.60 Aligned_cols=153 Identities=50% Similarity=0.849 Sum_probs=122.2
Q ss_pred EECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC
Q 028686 8 YFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 86 (205)
Q Consensus 8 v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (205)
++|++|+|||||+++|.+... .....++. .++.............+.+||+||...+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999999886 45555555 6777777777777889999999999988887888899999999999999
Q ss_pred ChhHHHHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCCCCCccCHHH-HHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 87 DESSFNNIRNWIRN-IEQHASDNVNKVLVGNKADMDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 87 ~~~s~~~~~~~~~~-i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
++.++..+..|... .......+.|+++++||.|+...... .... .........++++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVV-SEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccch-HHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99999998887322 33334467999999999998653222 1111 3444555668999999999999999999985
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=1.6e-24 Score=161.35 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=106.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHh--CCCCCCc------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 69 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 69 (205)
-+|+++|.+++|||||+++|++ +.+...+ .++.+.++......+....+.+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 4443332 1233444444444454456789999999999999999
Q ss_pred hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------hCCc
Q 028686 70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGIK 142 (205)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~ 142 (205)
..+++.+|++++|||+++.. +.....|+..+.. .++|+++|+||+|+.+.......+++.++... .+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333334444332 46899999999999643222234445555422 3678
Q ss_pred EEEEcCCCCCCHHHH
Q 028686 143 FFETSAKTNLNVEQV 157 (205)
Q Consensus 143 ~~~~Sa~~~~gi~~~ 157 (205)
++++||++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887544
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=8.5e-25 Score=163.62 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=106.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC-----------hhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTA 71 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~ 71 (205)
.++|+++|.+|+|||||+++|.+..+...+.++.+ +....+.+. .+.+||||| ++.++.++..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 47999999999999999999999876655555443 333333333 489999999 5667766666
Q ss_pred hcc----CCcEEEEEEeCCChhHHH----------HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686 72 YYR----GAMGILLVYDVTDESSFN----------NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137 (205)
Q Consensus 72 ~~~----~~d~~i~v~d~~~~~s~~----------~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (205)
++. .++++++|+|.+....+. .-..+...+. ..++|+++|+||+|+.+.. .+...+++.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~----~~~~~~~~~ 155 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR----DEVLDEIAE 155 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH----HHHHHHHHH
Confidence 654 356778888876432210 0011122222 2469999999999985422 345566666
Q ss_pred HhCC---------cEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 138 EYGI---------KFFETSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 138 ~~~~---------~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
.+++ +++++||++| |++++|++|.+.+.+..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 6664 4799999999 999999999988755443
No 143
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=5.4e-25 Score=150.18 Aligned_cols=159 Identities=19% Similarity=0.356 Sum_probs=128.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+++.++|..+||||||+|.+..+.+.+.-.||.|...+ .+....+.+.+||.||+..++++|+.|++.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3578999999999999999999999998888999985544 334456889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 155 (205)
|+|+.+++.++..+..+..+.. ..-.++|+++.+||.|++++ ....++.+-. ....+.+|.+|+++..+|+
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A---L~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA---LSKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc---ccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 9999999988887775555543 33378999999999998653 3333332211 1223779999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQ 167 (205)
Q Consensus 156 ~~~~~i~~~~~~ 167 (205)
-+..|+++.-..
T Consensus 172 ~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 172 ITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.8e-23 Score=150.18 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=111.1
Q ss_pred EECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------hhhhhcc--CCcEE
Q 028686 8 YFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR--GAMGI 79 (205)
Q Consensus 8 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~d~~ 79 (205)
|+|.+|+|||||+++|.+........++.+.+.....+.+++ ..+.+|||||+..+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999999875444455555556556666766 4689999999876553 3455564 89999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
++|+|.++++... .|...+.. .++|+++|+||+|+.+. ..+ ......+...++++++++||.++.|++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEK-RGI-KIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhccc-ccc-hhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 9999999865432 34444433 36899999999999653 222 2334567777789999999999999999999
Q ss_pred HHHHHH
Q 028686 160 SIARDI 165 (205)
Q Consensus 160 ~i~~~~ 165 (205)
++.+.+
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 998763
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3e-23 Score=165.24 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=114.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhh---hccCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGA 76 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~ 76 (205)
-.|+|+|.|+||||||+++|.+........|.++.......+.+++ ...+.+||+||... ...+... .+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5789999999999999999998764322222112222222334432 25689999999742 1223333 34579
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 77 MGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 77 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
+++++|+|+++. ++++.+..|.+++..+.. .+.|++||+||+|+.+. ....+..+.+.+..+.+++++||+++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 999999999986 688888888888876542 46899999999999653 22334455566667789999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARDI 165 (205)
Q Consensus 152 ~gi~~~~~~i~~~~ 165 (205)
+|++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=3.8e-23 Score=166.00 Aligned_cols=152 Identities=22% Similarity=0.182 Sum_probs=110.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh---------hhhhhhhhhcc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYYR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~ 74 (205)
++|+++|.+|+|||||+|+|.+........+..+.++....+.+.+. ..+.+|||+|.. .+...+. .+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-EVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-HHH
Confidence 78999999999999999999998743333333334455556666322 478999999972 2333222 477
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
++|++++|+|++++.+++++..|...+......+.|+++|+||+|+.+. .+..... ....+++++||++|.|+
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHHHHH-hCCCCEEEEEccCCCCH
Confidence 8999999999999988888877777776654456899999999998541 1122221 12246899999999999
Q ss_pred HHHHHHHHHH
Q 028686 155 EQVFFSIARD 164 (205)
Q Consensus 155 ~~~~~~i~~~ 164 (205)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 147
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=1.8e-23 Score=143.58 Aligned_cols=114 Identities=33% Similarity=0.589 Sum_probs=88.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCC--CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
||+|+|++|||||||+++|++..+. ..+.++.+..+......+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998875 22233333344445556666777799999999998888878889999999999
Q ss_pred EeCCChhHHHHHHHH---HHHHHhhcCCCCcEEEEEeCCC
Q 028686 83 YDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~piiiv~nK~D 119 (205)
||+++++||+++..+ +..+.... .++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999998654 55555443 5699999999998
No 148
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=4.6e-23 Score=172.16 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=121.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhcc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 74 (205)
.+|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||.+. +......+++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 33444445555555566666 4588999999752 3444566788
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
.+|++++|+|+++..++.. ..|...+.. .+.|+++|+||+|+.... .+....+...++ ..+++||++|.|+
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~----~~~~~~~~~g~~-~~~~iSA~~g~gi 187 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE----ADAAALWSLGLG-EPHPVSALHGRGV 187 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc----hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence 9999999999998766543 234444443 469999999999985321 122222222333 3579999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCC
Q 028686 155 EQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192 (205)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (205)
+++|+++.+.+.+.....+....+.++.+...+..+++
T Consensus 188 ~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKS 225 (472)
T PRK03003 188 GDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKS 225 (472)
T ss_pred HHHHHHHHhhcccccccccccccceEEEEECCCCCCHH
Confidence 99999999888653222211234456666666666554
No 149
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.7e-23 Score=141.83 Aligned_cols=156 Identities=21% Similarity=0.405 Sum_probs=128.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|..++||||++..|+.+.. ....||.| |....+.+ +++.+.+||.+|+++.+.+|.+|+....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 47899999999999999999998764 45678888 55555555 558999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 156 (205)
+|..+.+.++++++.+..+.... ..+.|++|.+||.|++++ ..++++..+.. ...+.+..+++.+|.|+.+
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 99999999999988766665544 367999999999999654 45677766543 2236788999999999999
Q ss_pred HHHHHHHHHH
Q 028686 157 VFFSIARDIK 166 (205)
Q Consensus 157 ~~~~i~~~~~ 166 (205)
-|.|++..+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999987653
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=1.6e-22 Score=166.83 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=117.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 73 (205)
.++|+++|.+|+|||||+|+|++... .....++++.++....+.+++ ..+.+|||||...+... ...++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 47999999999999999999998753 223345555677777778877 45789999998544322 23577
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
+.+|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+.+. +...+++.++.+++++||++ .|
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-CC
Confidence 899999999999998887765 6665542 46899999999998542 12345566778899999998 59
Q ss_pred HHHHHHHHHHHHHHHh
Q 028686 154 VEQVFFSIARDIKQRL 169 (205)
Q Consensus 154 i~~~~~~i~~~~~~~~ 169 (205)
|+++|+.+.+.+.+..
T Consensus 348 I~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 348 IKALVDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 151
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=3.3e-22 Score=137.49 Aligned_cols=165 Identities=26% Similarity=0.365 Sum_probs=137.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhh-hhhhhhhccCCcE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGAMG 78 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~ 78 (205)
-.||+++|..++|||+++++|+.+. ...++.||+. |.|...+.. .+-.-.+.++||.|-... ..+..+|+.-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4799999999999999999998776 3356677776 455455544 345567999999997665 6778899999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686 79 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 157 (205)
+++||+..+++||..+..+-..|.++.. ..+||++++||.|+.+ +.++..+-++.|++.-.+.++++++.+...+-+.
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999999887777876653 6799999999999965 6778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028686 158 FFSIARDIKQRL 169 (205)
Q Consensus 158 ~~~i~~~~~~~~ 169 (205)
|..+...+.+.+
T Consensus 167 f~~l~~rl~~pq 178 (198)
T KOG3883|consen 167 FTYLASRLHQPQ 178 (198)
T ss_pred HHHHHHhccCCc
Confidence 999888765533
No 152
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=2.2e-22 Score=144.17 Aligned_cols=146 Identities=21% Similarity=0.181 Sum_probs=106.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh--------hhhhhcc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 74 (205)
++|+++|++|+|||||++++.+.... ....++...++....+...+ ..+.+|||||..++.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987642 22233333444444555554 5689999999754322 1234567
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
.+|++++|+|++++.+......|.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|+
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 8999999999999887776654433 246899999999998653221 23444578999999999999
Q ss_pred HHHHHHHHHHH
Q 028686 155 EQVFFSIARDI 165 (205)
Q Consensus 155 ~~~~~~i~~~~ 165 (205)
++++++|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 153
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.90 E-value=4.2e-23 Score=142.26 Aligned_cols=164 Identities=22% Similarity=0.469 Sum_probs=143.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|.++|++..|||||+-.+.++.+++++..+.|..+..+.+.+.+.++.+.+||.+|++++..+.+....++-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC----CCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD----ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 158 (205)
||++.++++..+..|+...+..+...+| |+||+|.|+. .+..+-...+++.+++-.++++|++|+....|+..+|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 9999999999999999999887765555 5689999952 2111222344677788888999999999999999999
Q ss_pred HHHHHHHHH
Q 028686 159 FSIARDIKQ 167 (205)
Q Consensus 159 ~~i~~~~~~ 167 (205)
..++..+..
T Consensus 179 K~vlAklFn 187 (205)
T KOG1673|consen 179 KIVLAKLFN 187 (205)
T ss_pred HHHHHHHhC
Confidence 998887754
No 154
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=6.7e-23 Score=145.55 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=106.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh------hhhhhhhc--cC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------RTITTAYY--RG 75 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~ 75 (205)
|+|+++|.||||||||+|+|.+.+......|..+.+.....+.+.+ ..+.++|+||.... ......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999986555566666677777777777 56899999995432 22233343 58
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHH
Q 028686 76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (205)
.|++++|+|+++.+.- ..+...+.. .++|+++++||+|..... -..-+...+.+.++++++.+||++++|++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e---~g~P~vvvlN~~D~a~~~--g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLE---LGIPVVVVLNKMDEAERK--GIEIDAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHH---TTSSEEEEEETHHHHHHT--TEEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHH---cCCCEEEEEeCHHHHHHc--CCEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 9999999999885422 223344433 469999999999985422 22335677888899999999999999999
Q ss_pred HHHHHH
Q 028686 156 QVFFSI 161 (205)
Q Consensus 156 ~~~~~i 161 (205)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 155
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=7.3e-23 Score=149.60 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=106.3
Q ss_pred EECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhh---hhhhccCCcEEE
Q 028686 8 YFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYRGAMGIL 80 (205)
Q Consensus 8 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~d~~i 80 (205)
++|++|||||||+++|.+........+....+.....+.++. ...+.+||+||... .+.+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999864211112122223333344441 35689999999742 1222 233467899999
Q ss_pred EEEeCCCh------hHHHHHHHHHHHHHhhcC-------CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686 81 LVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 81 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
+|+|++++ .+++++..|...+..... .+.|+++|+||+|+... ...............+..++++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA-EELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch-hHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999988 578888878777765432 36899999999998642 22222212233444567899999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 028686 148 AKTNLNVEQVFFSIARD 164 (205)
Q Consensus 148 a~~~~gi~~~~~~i~~~ 164 (205)
|+++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.1e-22 Score=169.82 Aligned_cols=162 Identities=22% Similarity=0.168 Sum_probs=115.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhh-h
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTIT-T 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~-~ 70 (205)
.++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++.. +.+|||||. +.+..+. .
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence 479999999999999999999998742 3444555556666667777754 679999995 3333332 3
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHH-HHHHhCCcEEEEcC
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQA-LADEYGIKFFETSA 148 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~~~~Sa 148 (205)
.+++.+|++++|+|++++.++.++. ++..+.. .+.|+++|+||+|+.+... ....+++.. +.....++++++||
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 4578999999999999988877763 3444433 4689999999999964211 111122222 22222378999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc
Q 028686 149 KTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
++|.|++++|+.+.+.+.....
T Consensus 365 k~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 365 KTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999988765544
No 157
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.7e-22 Score=149.18 Aligned_cols=155 Identities=19% Similarity=0.120 Sum_probs=110.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCccc----------------ceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFIT----------------TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 68 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (205)
+|+++|.+|+|||||+++|++........+ ....+.....+... ...+.+||+||..++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998875443311 11222222233333 467999999999988888
Q ss_pred hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-CCccCHHHHHHHHHH---------
Q 028686 69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADE--------- 138 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~--------- 138 (205)
+..+++.+|++++|+|+.++.+... ..++..+.. .+.|+++++||+|+... ......+++.+....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888999999999999987654432 233333333 46999999999998642 112223334443332
Q ss_pred -----hCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 139 -----YGIKFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 139 -----~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
...+++++||++|.|++++++++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 347899999999999999999998875
No 158
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=7.1e-22 Score=161.33 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=116.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhhh---ccCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGA 76 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~ 76 (205)
-.|+|+|.||||||||+++|++.+......|.++.....-.+.++. ...+.+||+||... ...+...+ +.++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4789999999999999999998774322222222222222333331 25689999999632 22333333 4569
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 77 MGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 77 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
+++++|+|+++. +++++...|.+.+..+.. .+.|++||+||+|+.. ..+.+..+.+.++.+++++||+++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence 999999999864 678888888888876543 4689999999999843 134556667777788999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 028686 152 LNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~ 170 (205)
.|++++++++.+.+.+...
T Consensus 313 eGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 313 QGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999988866543
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=1.7e-22 Score=145.57 Aligned_cols=141 Identities=20% Similarity=0.191 Sum_probs=100.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-----hhhhhhhhhccCCcEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI 79 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~ 79 (205)
+|+++|.+|+|||||+++|.+... ...++.+ +.+... .+||+||.. .+..+. ..+..+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceE-------EEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence 799999999999999999876531 1122222 122221 269999973 222222 336789999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC--cEEEEcCCCCCCHHHH
Q 028686 80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--KFFETSAKTNLNVEQV 157 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~gi~~~ 157 (205)
++|+|+++.+++.. .|+..+ ..+.|+++++||.|+.+ ...+...+++.+.+. +++++||+++.|++++
T Consensus 69 l~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 69 IYVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQL 138 (158)
T ss_pred EEEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence 99999998876632 343333 13579999999999854 235666777777774 8999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028686 158 FFSIARDIKQRL 169 (205)
Q Consensus 158 ~~~i~~~~~~~~ 169 (205)
|+++.+.+.+.+
T Consensus 139 ~~~l~~~~~~~~ 150 (158)
T PRK15467 139 VDYLASLTKQEE 150 (158)
T ss_pred HHHHHHhchhhh
Confidence 999988776544
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.1e-22 Score=149.71 Aligned_cols=159 Identities=16% Similarity=0.080 Sum_probs=103.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC----CCCCC---cc--cceeeEEEEEEEE----------ECCEEEEEEEEeCCChhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG----SFTTS---FI--TTIGIDFKIRTIE----------LDGKRIKLQIWDTAGQER 64 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~----~~~~~---~~--~t~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~ 64 (205)
++|+++|++++|||||+++|+.. .+... .. .|.+..+....+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999873 12111 11 2333333333332 123357899999999976
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHH-H-----
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALA-D----- 137 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~-~----- 137 (205)
+..........+|++++|+|+++.........+. +... .+.|+++++||+|+.... .....+++.+.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444444456789999999998744333222222 1122 257999999999986321 111223332221 1
Q ss_pred -HhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 138 -EYGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 138 -~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
..+++++++||++|.|++++++++..++.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13578999999999999999999988764
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2.5e-22 Score=166.39 Aligned_cols=148 Identities=25% Similarity=0.201 Sum_probs=112.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 73 (205)
.++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++ ..+.+|||||..++... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999987642 33344445566667777776 56899999998654322 22357
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
..+|++++|+|++++.++++...|.. ..+.|+++|+||+|+.+.. .. . ...+.+++++||++|.|
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~-~~--~------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEI-DL--E------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccc-hh--h------hccCCceEEEEeeCCCC
Confidence 88999999999999888776544433 2468999999999996421 11 1 33456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDIKQ 167 (205)
Q Consensus 154 i~~~~~~i~~~~~~ 167 (205)
++++++++.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 162
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=5.8e-22 Score=154.66 Aligned_cols=153 Identities=18% Similarity=0.062 Sum_probs=104.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hhhhhhcc
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTT--SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYR 74 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 74 (205)
+|+++|.||||||||+|+|++.++.. ....|+. +........++ ..+.+|||||..... ......+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-CcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999987532 2222332 22222222222 468999999965321 12345678
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCC
Q 028686 75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN 153 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 153 (205)
.+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+ .....+....+....+. +++++||++|.|
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 151 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDN 151 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence 999999999999876654 334444443 3589999999999853 22222334444444443 799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDIKQ 167 (205)
Q Consensus 154 i~~~~~~i~~~~~~ 167 (205)
++++++++.+.+.+
T Consensus 152 i~~L~~~l~~~l~~ 165 (270)
T TIGR00436 152 TSFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999887644
No 163
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=6.4e-22 Score=168.47 Aligned_cols=157 Identities=21% Similarity=0.310 Sum_probs=116.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC-------CCCCcccc------eeeEEEEEEE--EE---CCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIRTI--EL---DGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t------~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~ 64 (205)
.-+|+++|..++|||||+++|+... +...+..+ .|.++....+ .+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998752 11222211 2444443333 22 46678999999999999
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--- 141 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 141 (205)
|...+..+++.+|++|+|+|+++..++.....|...+. .++|+++|+||+|+.+.. ..+...++...++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998766666555554432 368999999999985421 12233455555665
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 142 KFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 142 ~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.++++||++|.|++++|++|.+.+.
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCC
Confidence 4899999999999999999988763
No 164
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.1e-21 Score=162.14 Aligned_cols=165 Identities=15% Similarity=0.124 Sum_probs=114.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhh---hhhhccC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTI---TTAYYRG 75 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~ 75 (205)
...|+|+|.||||||||+++|.+.+......|.++.+...-.+.+.+ ..+.+||+||... ...+ ....+.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 35799999999999999999998765432223233333334445544 5799999999531 1112 2234577
Q ss_pred CcEEEEEEeCCC----hhHHHHHHHHHHHHHhhc-----------CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC
Q 028686 76 AMGILLVYDVTD----ESSFNNIRNWIRNIEQHA-----------SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG 140 (205)
Q Consensus 76 ~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~-----------~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (205)
++++++|+|+++ ++.++++..|..++..+. ..+.|++||+||+|+++. .. ..+.........+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~e-l~e~l~~~l~~~g 314 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-RE-LAEFVRPELEARG 314 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-HH-HHHHHHHHHHHcC
Confidence 999999999985 345666666666665443 136899999999999642 11 2223333344557
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 141 IKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 141 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
++++++||+++.|+++++++|.+.+...+..
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 8999999999999999999999998776543
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1e-21 Score=161.13 Aligned_cols=158 Identities=22% Similarity=0.173 Sum_probs=112.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--hhhhhhh------hccC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTA------YYRG 75 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~------~~~~ 75 (205)
.+|+++|.+|||||||+|+|.+........+..+.+.....+.+.+. ..+.+|||+|..+ ...++.. .+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 57999999999999999999987754333333344444445555442 2578999999743 1222333 3578
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc-EEEEcCCCCCCH
Q 028686 76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNV 154 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi 154 (205)
+|++++|+|++++.+++.+..|...+......+.|+++|+||+|+.+. .. .... ....+.+ ++++||++|.|+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~-~~---~~~~--~~~~~~~~~v~ISAktG~GI 350 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD-FE---PRID--RDEENKPIRVWLSAQTGAGI 350 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc-hh---HHHH--HHhcCCCceEEEeCCCCCCH
Confidence 999999999999988888766666665544457999999999998532 11 1111 1123444 588999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 155 EQVFFSIARDIKQR 168 (205)
Q Consensus 155 ~~~~~~i~~~~~~~ 168 (205)
+++++++.+.+...
T Consensus 351 deL~e~I~~~l~~~ 364 (426)
T PRK11058 351 PLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988543
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=5.2e-22 Score=142.33 Aligned_cols=145 Identities=20% Similarity=0.133 Sum_probs=100.4
Q ss_pred EEECCCCCcHHHHHHHHHhCCC--CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh--------hhhhhccCC
Q 028686 7 IYFERGGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGA 76 (205)
Q Consensus 7 ~v~G~~~~GKtsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~ 76 (205)
+++|.+|+|||||+++|++... .....+ .+.+........++ ..+.+|||||...+.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG-VTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCC-ceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 4799999999999999998752 223322 23334444455555 5689999999876443 334567889
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHH
Q 028686 77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVE 155 (205)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 155 (205)
|++++|+|..+..+.... .+...+.. .+.|+++|+||+|+.+... . .......+. +++++|++++.|++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~-----~-~~~~~~~~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED-----E-AAEFYSLGFGEPIPISAEHGRGIG 147 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH-----H-HHHHHhcCCCCeEEEecccCCCHH
Confidence 999999999875444332 12233322 3589999999999865211 1 222334455 78999999999999
Q ss_pred HHHHHHHHH
Q 028686 156 QVFFSIARD 164 (205)
Q Consensus 156 ~~~~~i~~~ 164 (205)
++|+++.+.
T Consensus 148 ~l~~~l~~~ 156 (157)
T cd01894 148 DLLDAILEL 156 (157)
T ss_pred HHHHHHHhh
Confidence 999999875
No 167
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=1.5e-21 Score=156.54 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=107.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhh-------hhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT-------TAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~~~ 73 (205)
.++|+++|.+|||||||+|+|++..+... ..+.++.+.....+..++ ..+.+|||||... +..+. ...+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 36899999999999999999998876421 112222334444555555 4689999999842 22221 2346
Q ss_pred cCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKT 150 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 150 (205)
..+|++++|+|..+ ++.... .|++.+... +.|.++|+||+|+.+. ...++.+++.... ..++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 78999999999765 444443 355555432 4677899999998531 2345555555443 5799999999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 028686 151 NLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~~~~~ 169 (205)
|.|++++|++|.+.+.+..
T Consensus 201 g~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISP 219 (339)
T ss_pred ccCHHHHHHHHHHhCCCCC
Confidence 9999999999988765543
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=1.3e-21 Score=165.88 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=112.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
..+|+++|++++|||||+++|.+..+.....++++.+.....+.+++. ..+.+|||||+++|..++...+..+|++|+|
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 468999999999999999999998877666565655665556666432 2689999999999999999899999999999
Q ss_pred EeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-------C--CcEEEEcCCC
Q 028686 83 YDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKT 150 (205)
Q Consensus 83 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~ 150 (205)
+|+++ +++.+.+ ......++|+++++||+|+.+. ..+++....... + .+++++||++
T Consensus 166 Vda~dgv~~qT~e~i-------~~~~~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt 234 (587)
T TIGR00487 166 VAADDGVMPQTIEAI-------SHAKAANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT 234 (587)
T ss_pred EECCCCCCHhHHHHH-------HHHHHcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence 99986 3444332 2222246999999999998642 223333333222 2 4799999999
Q ss_pred CCCHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIAR 163 (205)
Q Consensus 151 ~~gi~~~~~~i~~ 163 (205)
|.|++++|+++..
T Consensus 235 GeGI~eLl~~I~~ 247 (587)
T TIGR00487 235 GDGIDELLDMILL 247 (587)
T ss_pred CCChHHHHHhhhh
Confidence 9999999999874
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=3e-21 Score=140.37 Aligned_cols=155 Identities=25% Similarity=0.191 Sum_probs=103.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----------hhh-hh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTI-TT 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~-~~ 70 (205)
.++|+++|.+|+|||||+++|.+.... ....+..........+..++ ..+.+||+||.... ... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999987632 22223333333334455555 34789999996432 111 12
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH-HHHHHHHh----CCcEEE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK-GQALADEY----GIKFFE 145 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~-~~~~~~~~----~~~~~~ 145 (205)
..+..+|++++|+|++++.+..... +...+.. .+.|+++++||+|+.+.... ..++ ...+.+.+ ..++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSK-TMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHH-HHHHHHHHHHhhcccccCCceEE
Confidence 3467899999999999887655432 2333222 35899999999998653211 1222 22233333 368999
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 028686 146 TSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~ 164 (205)
+||+++.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 170
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.1e-22 Score=143.22 Aligned_cols=164 Identities=27% Similarity=0.542 Sum_probs=142.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++++++|+.|.||||++++.+.+++...+.+|+|..........+...+++..|||.|++.+..+...++-.+..+||+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 57899999999999999999999999999999999999888877766679999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++.+-++.++..|...+.+.+ .++||+++|||.|..... .......+-...++.|+++|++++.|++..|.|+.
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~---~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK---VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc---cccccceeeecccceeEEeecccccccccchHHHh
Confidence 99999999999999999998887 469999999999974321 22233334455678999999999999999999999
Q ss_pred HHHHHHhc
Q 028686 163 RDIKQRLA 170 (205)
Q Consensus 163 ~~~~~~~~ 170 (205)
+.+.....
T Consensus 166 rKl~G~p~ 173 (216)
T KOG0096|consen 166 RKLTGDPS 173 (216)
T ss_pred hhhcCCCC
Confidence 98866433
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=3.9e-21 Score=159.34 Aligned_cols=159 Identities=24% Similarity=0.141 Sum_probs=110.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-----------hh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------TT 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 70 (205)
.++|+++|.+|+|||||+++|++.... ....+.+..+.....+..++. .+.+|||||..+.... ..
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHH
Confidence 479999999999999999999987632 222333334444455555554 6899999996443221 13
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHHH----hCCcEEE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADE----YGIKFFE 145 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~ 145 (205)
..++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+.+ +. ...++.. .+... ..+++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DE-KTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CH-HHHHHHHHHHHHhcccCCCCceEE
Confidence 4678999999999999877665542 3333332 4689999999999962 11 1122222 22222 2378999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 146 TSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
+||++|.|++++|+++.+.+....
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998876554
No 172
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.7e-22 Score=140.05 Aligned_cols=159 Identities=19% Similarity=0.306 Sum_probs=125.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC-------CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 75 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 75 (205)
.+.|+++|..++|||||+.++.... .+....+|.|.......+. ...+.+||.+|++..+++|..|+..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHH
Confidence 3678999999999999999875321 2244567777666655553 3679999999999999999999999
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH------HhCCcEEEEcC
Q 028686 76 AMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSA 148 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa 148 (205)
++++|+++|+++++-|+.-...++.+.. ....++|+++.+||.|+.+. ...+++..... ....++..+||
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~---~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA---MEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh---hhHHHHHHHhhhhhhcCCccCccccchh
Confidence 9999999999999999988776666543 33478999999999998542 34444443332 22378999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~~~~ 168 (205)
.+|+||++..+|+...+..+
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999998876
No 173
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=4.5e-21 Score=163.15 Aligned_cols=156 Identities=19% Similarity=0.213 Sum_probs=118.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
+.|+++|.+++|||||+++|.+.. +..++.++++.++....+.+++ ..+.+||+||+++|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 478999999999999999999743 4445556666677666677766 67999999999999888888899999999
Q ss_pred EEEeCCC---hhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC-ccCHHHHHHHHHHh----CCcEEEEcCCCC
Q 028686 81 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEY----GIKFFETSAKTN 151 (205)
Q Consensus 81 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~~ 151 (205)
+|+|+++ +++++.+. .+.. .++| +++|+||+|+.+.+. ....+++..+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 56665542 2221 3577 999999999965221 11234455555544 478999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARDIKQR 168 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~ 168 (205)
.|++++++++...+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999987776543
No 174
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=7.3e-21 Score=142.45 Aligned_cols=117 Identities=15% Similarity=0.337 Sum_probs=89.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCC-cEEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA-MGILLVY 83 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 83 (205)
+|+++|++|||||+|+++|....+...+.++ ...+........+....+.+||+||+.+++..+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998876665443 2233322222223456799999999999998888899998 9999999
Q ss_pred eCCCh-hHHHHHHHHHHHHHhh---cCCCCcEEEEEeCCCCCC
Q 028686 84 DVTDE-SSFNNIRNWIRNIEQH---ASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 84 d~~~~-~s~~~~~~~~~~i~~~---~~~~~piiiv~nK~Dl~~ 122 (205)
|..+. +++..+..|+..+... ..+++|++|++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 6777776665544322 225799999999999864
No 175
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=3.3e-21 Score=167.18 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=112.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
...|+++|..++|||||+++|.+..+.....+.+..+.....+.+++ ..+.||||||++.|..++...+..+|++|+|
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILV 367 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLV 367 (787)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence 46799999999999999999998877655555555455555566655 5689999999999999999889999999999
Q ss_pred EeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH---HHHHhC--CcEEEEcCCCCCCH
Q 028686 83 YDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA---LADEYG--IKFFETSAKTNLNV 154 (205)
Q Consensus 83 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~gi 154 (205)
||+++ +++++.+ ......++|++|++||+|+.+.+......++.. +...++ ++++++||++|.|+
T Consensus 368 VdAddGv~~qT~e~i-------~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 368 VAADDGVMPQTIEAI-------NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EECCCCCCHhHHHHH-------HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 99987 4444332 222235699999999999964221111111111 122333 78999999999999
Q ss_pred HHHHHHHHHH
Q 028686 155 EQVFFSIARD 164 (205)
Q Consensus 155 ~~~~~~i~~~ 164 (205)
+++|++|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998764
No 176
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=2.6e-21 Score=166.53 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=111.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeE--EEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGID--FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
...|+++|..++|||||+++|....+.....++.+.+ .+...+..++....+.+|||||++.|..++...+..+|++|
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaI 323 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAI 323 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEE
Confidence 4689999999999999999999887654444333322 33333334445578999999999999999999999999999
Q ss_pred EEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHhC--CcEEEEcCCCCC
Q 028686 81 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNL 152 (205)
Q Consensus 81 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~ 152 (205)
+|+|+++ +++++.+. .+ ...++|+++++||+|+.+.......+++..+ ...++ ++++++||++|.
T Consensus 324 LVVDA~dGv~~QT~E~I~----~~---k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~ 396 (742)
T CHL00189 324 LIIAADDGVKPQTIEAIN----YI---QAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGT 396 (742)
T ss_pred EEEECcCCCChhhHHHHH----HH---HhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence 9999987 34444432 22 2246999999999998652211111111111 12233 689999999999
Q ss_pred CHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDI 165 (205)
Q Consensus 153 gi~~~~~~i~~~~ 165 (205)
|++++|+++....
T Consensus 397 GIdeLle~I~~l~ 409 (742)
T CHL00189 397 NIDKLLETILLLA 409 (742)
T ss_pred CHHHHHHhhhhhh
Confidence 9999999988764
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=3.1e-21 Score=144.55 Aligned_cols=156 Identities=16% Similarity=0.134 Sum_probs=100.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC---CCccc--ceeeEEEEEEEE-----------------------EC--C----
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT---TSFIT--TIGIDFKIRTIE-----------------------LD--G---- 49 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~--t~~~~~~~~~~~-----------------------~~--~---- 49 (205)
++|+++|..|+|||||+..|.+...+ .+... +....+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 58999999999999999999765211 11111 111111111100 00 1
Q ss_pred EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
....+.+|||||++++...+...+..+|++++|+|++++ ++++.+ ..+... ...|+++++||+|+.+...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~~~~--~~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AALEIM--GLKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHHHHc--CCCcEEEEEEchhccCHHH
Confidence 115789999999998888777788899999999999873 333333 222221 2247899999999864211
Q ss_pred -ccCHHHHHHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 126 -AVPTSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 126 -~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
....++++++.... +++++++||++|.|++++|+++.+.+
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 11123344444432 57899999999999999999998654
No 178
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=6.4e-21 Score=141.92 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=104.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~ 72 (205)
.++|+++|.+|+|||||+++|++..+...+.++.+.+.......+ ...+.+|||||. +.+..+...+
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 478999999999999999999987654444455443332222222 257899999994 3444445555
Q ss_pred ccCC---cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHHHhCCcEEEEcC
Q 028686 73 YRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 73 ~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
++.+ +++++|+|.+++.+.... .+...+. . .+.|+++++||.|+.+... +...+++.........+++++||
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa 176 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSS 176 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 5544 678888888775433321 1122222 2 3589999999999854211 11123344444444678999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~~~ 167 (205)
+++.|+++++++|.+.+.+
T Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 177 LKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 9999999999999877653
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=8.3e-21 Score=157.60 Aligned_cols=174 Identities=22% Similarity=0.230 Sum_probs=116.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhcc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 74 (205)
.+|+++|.+|||||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 57999999999999999999987642 22234444455556666766 6799999999876 3333456678
Q ss_pred CCcEEEEEEeCCChhHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686 75 GAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 151 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (205)
.+|++++|+|..++.+.. .+..|+. . .+.|+++|+||+|+.+. .+...++ ..++. .++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~-----~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE-----EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc-----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 999999999998753332 2333333 2 25899999999997431 1223333 34455 4899999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCC
Q 028686 152 LNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (205)
.|++++|+++.+..... ........+.++.+...+..+++
T Consensus 148 ~gv~~l~~~I~~~~~~~-~~~~~~~~~~~v~ivG~~n~GKS 187 (435)
T PRK00093 148 RGIGDLLDAILEELPEE-EEEDEEDEPIKIAIIGRPNVGKS 187 (435)
T ss_pred CCHHHHHHHHHhhCCcc-ccccccccceEEEEECCCCCCHH
Confidence 99999999998733221 11111223445555565555544
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6.4e-21 Score=158.03 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=116.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh--------hhhhhhhhhhccC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ--------ERFRTITTAYYRG 75 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 75 (205)
+|+++|.+|||||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987632 22234444455555566666 45899999995 3345556677889
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCH
Q 028686 76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 154 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 154 (205)
+|++++|+|..+..+..+. .+...+.+ .+.|+++|+||+|+.+... ...+ ....+. +++++||.+|.|+
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~-----~~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDA-----VAAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCcccc-----cHHH-HHhcCCCCeEEEeCCcCCCh
Confidence 9999999999875433321 22333333 3589999999999864221 1122 234565 7999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCC
Q 028686 155 EQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGG 191 (205)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (205)
+++++++.+.+............+.++.+...+..++
T Consensus 149 ~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GK 185 (429)
T TIGR03594 149 GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGK 185 (429)
T ss_pred HHHHHHHHHhcCcccccccccCCceEEEEECCCCCCH
Confidence 9999999887754322222222333455555444443
No 181
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=5e-21 Score=140.75 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=96.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~ 72 (205)
..+|+++|.+|+|||||+++|++..+...+.++.+.+.....+..++ .+.+||+||. ..+..+...+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 47999999999999999999998764333334444333333333332 5899999994 2344444455
Q ss_pred cc---CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHhC--CcEEEE
Q 028686 73 YR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG--IKFFET 146 (205)
Q Consensus 73 ~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 146 (205)
++ .++++++|+|.+++-+..+. .++..+.. .+.|+++++||+|+.+.. .....+++++.....+ .+++++
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~ 170 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLF 170 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEE
Confidence 54 35799999999875444443 22333332 358999999999986421 1223444555555544 589999
Q ss_pred cCCCCCCHH
Q 028686 147 SAKTNLNVE 155 (205)
Q Consensus 147 Sa~~~~gi~ 155 (205)
||++|+|++
T Consensus 171 Sa~~g~gi~ 179 (179)
T TIGR03598 171 SSLKKTGID 179 (179)
T ss_pred ECCCCCCCC
Confidence 999999974
No 182
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=1.9e-20 Score=152.10 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=114.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh----hh---hhhhccCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAYYRGA 76 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~~~ 76 (205)
-.|+|+|.||||||||+|+|.+.+......|.++.....-.+.+.. ...+.++|+||...-. .+ ....+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3689999999999999999998765333333232222323333332 2358999999964311 11 12346789
Q ss_pred cEEEEEEeCC---ChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCC
Q 028686 77 MGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK 149 (205)
Q Consensus 77 d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 149 (205)
+++++|+|++ +.+.++.+..|++.+..+.. .+.|+++|+||+|+.+. . ...+.+..+...++ .+++.+||+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~-el~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-E-EAEERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-H-HHHHHHHHHHHHhCCCCCEEEEECC
Confidence 9999999998 55677878888888876532 36899999999998542 1 22344455555544 478999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 028686 150 TNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~~~~~~~ 170 (205)
++.|+++++++|.+.+.+...
T Consensus 317 tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCcc
Confidence 999999999999998866533
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=1.5e-20 Score=135.62 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=103.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcc-cceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hhhhh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTA 71 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~ 71 (205)
|...+|+++|.+|+|||||+++|.+........ +.......... .......+.+||+||..... .....
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 567899999999999999999999876432211 11111111111 22234678999999965322 22344
Q ss_pred hccCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686 72 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK 149 (205)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 149 (205)
.+..+|++++|+|++++. .... .+...+.. .+.|+++++||+|+... .....+....+....+ .+++++|++
T Consensus 79 ~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~ 152 (168)
T cd04163 79 ALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISAL 152 (168)
T ss_pred HHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEec
Confidence 578899999999999862 2222 23333333 25899999999998632 2222333444444443 689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARD 164 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~ 164 (205)
++.|+++++++|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999764
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.9e-20 Score=159.51 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=109.5
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh------hhhhc--cCCcEEEE
Q 028686 10 ERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL 81 (205)
Q Consensus 10 G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~ 81 (205)
|.+|+|||||+|+|.+........|+.+.+.....+.+++ ..+.+|||||++++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999876555566666666666666666 45799999998876543 33333 37899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|+|.++.+.. ..+..++.+ .+.|+++++||+|+.+. ..+ ..+.+.+.+.++++++++||++|+|++++++++
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~-~~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEK-KGI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHh-CCC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999875422 222233322 46999999999998542 222 345677888899999999999999999999999
Q ss_pred HHHH
Q 028686 162 ARDI 165 (205)
Q Consensus 162 ~~~~ 165 (205)
.+.+
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 185
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=8.7e-20 Score=129.80 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=121.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCC--------CCC----cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSF--------TTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 68 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~--------~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (205)
|.-.||+|.|+.++||||++++++.... ... ...|..+++....+. .+..+++++||||++++.+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHHHH
Confidence 3457999999999999999999988763 111 124555666655543 2256899999999999999
Q ss_pred hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh--CCcEEEE
Q 028686 69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFET 146 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~ 146 (205)
|..+.+.+.++|+++|.+.+..+ +....++.+..... +|++|++||.||.+. ...++++++.... .++.++.
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a---~ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDA---LPPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCC---CCHHHHHHHHHhccCCCceeee
Confidence 99999999999999999999988 55555555554432 999999999999653 4567776665543 7899999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 028686 147 SAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~ 164 (205)
+|.++++..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999999888766
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=4.1e-20 Score=157.62 Aligned_cols=157 Identities=25% Similarity=0.304 Sum_probs=111.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCC-----Cc------ccceeeEEEEEEE--EE---CCEEEEEEEEeCCChhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS--FTT-----SF------ITTIGIDFKIRTI--EL---DGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~--~~~-----~~------~~t~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~ 65 (205)
-+|+++|..++|||||+.+|+... +.. .+ ....|.++....+ .+ ++..+.+.+|||||+.+|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 489999999999999999998632 111 00 0111222332222 22 455789999999999999
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc---
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK--- 142 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--- 142 (205)
...+..+++.+|++|+|+|+++.........|..... .++|+++|+||+|+.+.. ..+...++...+++.
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGIDASD 160 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCCcce
Confidence 9989999999999999999998655444444443321 468999999999985422 122233444445543
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 143 FFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 143 ~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
++++||++|.|+++++++|.+.+..
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999887643
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=1.3e-19 Score=158.11 Aligned_cols=178 Identities=17% Similarity=0.115 Sum_probs=115.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhcc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 74 (205)
.+|+++|.+|+|||||+|+|++.... ....++.+.+.......+++ ..+.+|||||.+. +......++.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 57999999999999999999987642 22334444444444445555 4688999999652 3344456788
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
.+|++++|+|.++.-...+ ..|...+.. .+.|+++|+||+|+.... ......+...++ ..+++||++|.|+
T Consensus 354 ~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~lg~~-~~~~iSA~~g~GI 424 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWKLGLG-EPYPISAMHGRGV 424 (712)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHHcCCC-CeEEEECCCCCCc
Confidence 9999999999986322111 134455543 469999999999985321 111222222222 4578999999999
Q ss_pred HHHHHHHHHHHHHHhcccC--CCCCCccccccCCCCCCCC
Q 028686 155 EQVFFSIARDIKQRLADTD--SRSEPSTIKINQPDQAGGV 192 (205)
Q Consensus 155 ~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 192 (205)
+++|+++++.+.+...... ..+...++.+...+..+++
T Consensus 425 ~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKS 464 (712)
T PRK09518 425 GDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKS 464 (712)
T ss_pred hHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHH
Confidence 9999999998855322110 1123345666665555544
No 188
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=1.3e-19 Score=142.98 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=103.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEEEEEEEECCEEEEEEEEeCCChhhh--------hhhhhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------RTITTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~ 73 (205)
.-.|+++|.+|||||||+|+|++.++... ..+.+...........+ ...+.+|||||.... .......+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999875322 12211111211122222 267999999996432 22334456
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL 152 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 152 (205)
..+|++++|+|+++..+- .....++.+. ..+.|+++|+||+|+... .....+....+....+ .+++++||+++.
T Consensus 83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred hcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 789999999999883211 1122223333 235899999999999632 2223344455555444 679999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDIKQ 167 (205)
Q Consensus 153 gi~~~~~~i~~~~~~ 167 (205)
|++++++++.+.+.+
T Consensus 158 gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 158 NVDELLDVIAKYLPE 172 (292)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999888754
No 189
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=1.7e-19 Score=157.22 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=113.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh----------hh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TT 70 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~ 70 (205)
|+.++|+++|.||||||||+|+|.+........+ |.+...+...+......+.+||+||.+++... ..
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~p--GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCC--CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 7789999999999999999999998765333333 33344444344445577999999998765421 12
Q ss_pred hhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686 71 AYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 71 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
.++ ..+|++++|+|.++.+.- ..|...+.+ .++|+++++||+|+.+. .. ...+.+++.+.++++++++|+
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~-~~-i~id~~~L~~~LG~pVvpiSA 150 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEK-QN-IRIDIDALSARLGCPVIPLVS 150 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhc-cC-cHHHHHHHHHHhCCCEEEEEe
Confidence 232 479999999999986542 234444443 36999999999998542 22 245677788889999999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARDI 165 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~ 165 (205)
.+++|++++++.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988765
No 190
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-22 Score=144.19 Aligned_cols=184 Identities=30% Similarity=0.509 Sum_probs=152.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE-EEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
.++++|+|+-|+|||+++.++....++..|..|+|.++..+.+.++.+ .+++++||..|++++-.+..-+++.+++.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 468999999999999999999999999999999999988887777653 4678999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQ 156 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 156 (205)
|||+++.-+|+....|.+.+..... .-+|+++..||+|+..............+.+++|+ ..+++|++.+.+++|
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 9999999999999999999865432 33778888999998543332334667788888884 799999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCccccccCC
Q 028686 157 VFFSIARDIKQRLADTDSRSEPSTIKINQP 186 (205)
Q Consensus 157 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (205)
+...+++.+.-+..+..+.+.+...++...
T Consensus 185 a~r~lVe~~lvnd~q~~~s~~~~~~~~~l~ 214 (229)
T KOG4423|consen 185 AQRELVEKILVNDEQPIKSSAVDGDKINLR 214 (229)
T ss_pred HHHHHHHHHHhhccCCcccccccccccCcc
Confidence 999999999887766655555554444443
No 191
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.84 E-value=9.6e-21 Score=155.01 Aligned_cols=164 Identities=23% Similarity=0.309 Sum_probs=127.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|+.|+||||||-.|...++.+..++-......+. ++.-..+...+.|++..++-+.....-+++||++.+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPa--dvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPA--DVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCC--ccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 459999999999999999999999998777665444322222 222233568999998766655555778899999999
Q ss_pred EEeCCChhHHHHHHH-HHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-C-cEEEEcCCCCCCHHH
Q 028686 82 VYDVTDESSFNNIRN-WIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-I-KFFETSAKTNLNVEQ 156 (205)
Q Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~gi~~ 156 (205)
||+++++++++.+.. |+..+++..+ .++|+|+|+||+|+..............+..++. + .+++|||++..++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 999999999999976 9999988764 6799999999999876444322333555555554 2 589999999999999
Q ss_pred HHHHHHHHHHH
Q 028686 157 VFFSIARDIKQ 167 (205)
Q Consensus 157 ~~~~i~~~~~~ 167 (205)
+|+...+++..
T Consensus 166 ~fYyaqKaVih 176 (625)
T KOG1707|consen 166 LFYYAQKAVIH 176 (625)
T ss_pred hhhhhhheeec
Confidence 99999888754
No 192
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=9.8e-20 Score=154.36 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=105.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCccc----ceeeEEEEEEEE------------ECCEEEEEEEEeCCChhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFIT----TIGIDFKIRTIE------------LDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~----t~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~~~ 67 (205)
--|+++|.+++|||||+++|.+..+...... +.+..+...... +......+.+|||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 3589999999999999999998876443222 223222211110 000112388999999999999
Q ss_pred hhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-----c------CHHH--
Q 028686 68 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-----V------PTSK-- 131 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-----~------~~~~-- 131 (205)
++..+++.+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+.+.-.. . ..+.
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99999999999999999987 566655432 221 36899999999998631100 0 0000
Q ss_pred ----------HHHHHH------------Hh--CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 132 ----------GQALAD------------EY--GIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 132 ----------~~~~~~------------~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
...+.+ .+ .++++++||++|+|+++++.++......
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 001111 11 2689999999999999999998765544
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=4.8e-20 Score=148.14 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=127.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh---------hhhhhh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITT 70 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~ 70 (205)
|....|+++|.||||||||.|+|++.... ....|.++.|..+....+.+. .+.++||+|.+. ......
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~ 78 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQAL 78 (444)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHH
Confidence 55567999999999999999999998854 444565666666666677664 489999999653 223345
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCC
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK 149 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 149 (205)
..+..||++|||+|....-+-.+ ....+.++ . .+.|+++|+||+|-.. ..+.+.+| -.+| -..+.+||.
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D-~~ia~~Lr-~--~~kpviLvvNK~D~~~-----~e~~~~ef-yslG~g~~~~ISA~ 148 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPAD-EEIAKILR-R--SKKPVILVVNKIDNLK-----AEELAYEF-YSLGFGEPVPISAE 148 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHH-h--cCCCEEEEEEcccCch-----hhhhHHHH-HhcCCCCceEeehh
Confidence 66789999999999977433222 11223333 2 4589999999999531 12222333 3345 478899999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCCC--CCCccccccCCCCCCCCCCC
Q 028686 150 TNLNVEQVFFSIARDIKQRLADTDSR--SEPSTIKINQPDQAGGVGQA 195 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 195 (205)
+|.|+.++++.+++.+. ..++.+.. ..+-++.+...++.++|..-
T Consensus 149 Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLi 195 (444)
T COG1160 149 HGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLI 195 (444)
T ss_pred hccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHH
Confidence 99999999999999985 22222222 36788888888888887653
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=3.5e-19 Score=147.94 Aligned_cols=160 Identities=24% Similarity=0.166 Sum_probs=109.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----------hhhh-hh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-TT 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~ 70 (205)
.++|+++|.+|+|||||+++|++... .....+....+.....+..++ ..+.+|||||..+ +... ..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 48999999999999999999998752 233344444445445555555 4578999999532 1111 12
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----hCCcEEEE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YGIKFFET 146 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~ 146 (205)
..++.+|++++|+|++++.+..+.. +...+.. .+.|+++++||+|+.+.. ...+....+... ..++++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEEEE
Confidence 4678899999999999876655542 3333332 458999999999986321 111111122222 24799999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 147 SAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
||+++.|++++|+.+.+.+..+..
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~~~ 348 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENANR 348 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999887766543
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=9.7e-20 Score=158.82 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=111.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----------hhhhhh-h
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT-T 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-~ 70 (205)
.++|+++|.+|||||||+|+|++.+.. ....++++.+.....+.+++.. +.+|||||.. .+..+. .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence 379999999999999999999998742 2233434455655666677654 6799999953 222221 3
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH-HHHHh----CCcEEE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA-LADEY----GIKFFE 145 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-~~~~~----~~~~~~ 145 (205)
..++.+|++++|+|+++..++.+.. ++..+.. .+.|+++|+||+|+.+... .+.... +...+ ..+.++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEEE
Confidence 4478899999999999987777654 3333432 4689999999999964211 122222 11221 257799
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 146 TSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
+||++|.|++++|+.+.+.+.++..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998876543
No 196
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=4.8e-20 Score=131.74 Aligned_cols=152 Identities=19% Similarity=0.132 Sum_probs=102.7
Q ss_pred EECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hhhhhhccCCcEE
Q 028686 8 YFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAMGI 79 (205)
Q Consensus 8 v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d~~ 79 (205)
++|.+|+|||||+++|.+.... ....+............... ...+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987644 22233222233333333321 3579999999976543 2344577899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH--HHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686 80 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS--KGQALADEYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 157 (205)
++|+|..+..+..... |...... .+.|+++|+||.|+.......... .........+.+++++|++++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999977666554 3333322 568999999999986532111110 112223344589999999999999999
Q ss_pred HHHHHHH
Q 028686 158 FFSIARD 164 (205)
Q Consensus 158 ~~~i~~~ 164 (205)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999875
No 197
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=3.1e-20 Score=137.59 Aligned_cols=160 Identities=19% Similarity=0.160 Sum_probs=106.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCC--C----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFT--T----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
..++|+++|+.++|||||+++|+...-. . +.............+..+.....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999854311 1 011111122222333311234679999999999
Q ss_pred hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHHHh---
Q 028686 64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADEY--- 139 (205)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~~~--- 139 (205)
+|.......+..+|++|+|+|+.+.-.. .....+..+.. .++|+++++||+|+...+.....+++. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 9888888889999999999999875322 22223334433 468999999999986322211222222 333333
Q ss_pred ---CCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 140 ---GIKFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 140 ---~~~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
.++++++||++|.|++++++.+.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25799999999999999999988764
No 198
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.84 E-value=3.3e-20 Score=126.10 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=119.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..|||+++|-.++|||||+.+|..... ....||.| |..+.+.+++ ++.+.+||.+|+...+..|..|+.+.|++||
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 358999999999999999999988764 34456777 5555555543 6789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|+|.+++--|+++...+-++... ....+|+.|.+||.|+.-+ ...+++..-++ ...+.+.++||.+++|+.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta---a~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA---AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh---cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 99999998899887755555443 3367999999999998542 12222222111 112678899999999999
Q ss_pred HHHHHHHHH
Q 028686 156 QVFFSIARD 164 (205)
Q Consensus 156 ~~~~~i~~~ 164 (205)
+-.+|+...
T Consensus 169 dg~~wv~sn 177 (185)
T KOG0074|consen 169 DGSDWVQSN 177 (185)
T ss_pred CcchhhhcC
Confidence 998888653
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1.2e-19 Score=150.09 Aligned_cols=153 Identities=17% Similarity=0.090 Sum_probs=104.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC--CCC-----------------------------CCcccceeeEEEEEEEEECCE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELDGK 50 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (205)
..++|+++|..++|||||+.+|+.. .+. .+..+..+.+.....+..+
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-- 83 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-- 83 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC--
Confidence 3589999999999999999999862 221 1122344444444444444
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHH--HHhhcCCCCcEEEEEeCCCCCCCCC---
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDESKR--- 125 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~--i~~~~~~~~piiiv~nK~Dl~~~~~--- 125 (205)
.+.+.+||+||+++|.......+..+|++++|+|+++.+++.. .++... +.... ...|+++++||+|+.+...
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHH
Confidence 4789999999999887666667789999999999998754322 222222 22222 2357889999999964211
Q ss_pred ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHH
Q 028686 126 AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~ 158 (205)
....+++..+++..+ ++++++||++|.|+++++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 122445566666655 679999999999998744
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=5.8e-19 Score=150.14 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=114.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh--CCCCCCc------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 68 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (205)
.-+|+++|..++|||||+++|+. +.+.... ..+.+.++......+....+.+.+|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999997 3332211 223455555555555556688999999999999999
Q ss_pred hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------hCC
Q 028686 69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGI 141 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~ 141 (205)
+..+++.+|++++|+|+.+.... ....++..+.. .++|+++++||+|+.+.......+++..+... ..+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999999875322 22333333332 46899999999998754443334455544322 347
Q ss_pred cEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 028686 142 KFFETSAKTNL----------NVEQVFFSIARDIK 166 (205)
Q Consensus 142 ~~~~~Sa~~~~----------gi~~~~~~i~~~~~ 166 (205)
+++.+||++|. |+..+|+.+++.+.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 89999999998 57778877766653
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=1.8e-18 Score=132.10 Aligned_cols=151 Identities=21% Similarity=0.153 Sum_probs=101.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hhhhhhccCCc
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM 77 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 77 (205)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764322222222233344445555 678999999974322 12345688999
Q ss_pred EEEEEEeCCChh-HHHHHHHHHHHH-----------------------------------------Hhh-----------
Q 028686 78 GILLVYDVTDES-SFNNIRNWIRNI-----------------------------------------EQH----------- 104 (205)
Q Consensus 78 ~~i~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~~----------- 104 (205)
++++|+|+++++ ....+...++.. ..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333333322211 000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 105 -----------A--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 105 -----------~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
. ..-+|+++|+||+|+.+ .+++..++.. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 01268999999999843 4455555543 4689999999999999999988754
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=3.8e-19 Score=151.31 Aligned_cols=158 Identities=17% Similarity=0.199 Sum_probs=111.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCCCc------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG--SFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 70 (205)
+|+++|..++|||||+++|+.. .+.... ...-|.+.......+....+++.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 222111 01112333333333333447899999999999998899
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-------HhCCcE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGIKF 143 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~ 143 (205)
.+++.+|++++|+|+++. .......|+..+.. .++|+++++||+|+.+.......+++..+.. +..+++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 999999999999999873 23444556666554 4689999999999865332222344444432 234789
Q ss_pred EEEcCCCCC----------CHHHHHHHHHHHHH
Q 028686 144 FETSAKTNL----------NVEQVFFSIARDIK 166 (205)
Q Consensus 144 ~~~Sa~~~~----------gi~~~~~~i~~~~~ 166 (205)
+.+||++|. |++.+|+.+++.+.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 999999995 79999988887664
No 203
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.7e-20 Score=125.69 Aligned_cols=158 Identities=22% Similarity=0.361 Sum_probs=119.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
-.+|+++|-.|+|||+++.++.-++.. ...||++ +....+.+ ++.++++||.+|+...+..|+-|+.+.|++|||
T Consensus 18 e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCcccccc--ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 478999999999999999888766643 4456666 33334444 568899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHHH
Q 028686 83 YDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i-~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
+|.+|++.+......+-.+ ....-....+++++||.|... .....|+... .+..-+.+++.||.+|+|++.
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~---~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~ 169 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG---ALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDP 169 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh---hhhHHHHHHHhChHHHhhheeEEEeeccccccCCcH
Confidence 9999988777666544433 333335577888899999843 2233333222 112227899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 157 VFFSIARDIKQR 168 (205)
Q Consensus 157 ~~~~i~~~~~~~ 168 (205)
.++|+.+.+..+
T Consensus 170 ~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 170 AMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHhcc
Confidence 999999987653
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=5.1e-19 Score=146.37 Aligned_cols=154 Identities=19% Similarity=0.085 Sum_probs=100.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCC--C-----------------------------CCcccceeeEEEEEEEEECCE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSF--T-----------------------------TSFITTIGIDFKIRTIELDGK 50 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (205)
..++|+++|.+++|||||+++|+...- . .+..+.+..+.....+.. .
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~--~ 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET--D 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec--C
Confidence 358999999999999999999984321 0 111233333444334444 4
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC---c
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKR---A 126 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~---~ 126 (205)
.+.+.+|||||+++|.......+..+|++++|+|++++.++.. ...++..+. .. ...|+++++||+|+.+.+. .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~-~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TL-GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-Hc-CCCeEEEEEEccccccccHHHHH
Confidence 4779999999998876655556788999999999987322211 112222222 22 1246899999999964211 1
Q ss_pred cCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHHH
Q 028686 127 VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 127 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 159 (205)
...+++..+....+ ++++++||++|.|+++++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 22345555655555 5799999999999987543
No 205
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.4e-18 Score=125.58 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=98.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----------hhhhhhhhhcc
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTITTAYYR 74 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~ 74 (205)
.|+++|.+|+|||||++.|.+..+.....++.+.+.....+..++ .+.+||+||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996655554555554444433444333 78999999942 23344444443
Q ss_pred ---CCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHH--HhCCcEEEE
Q 028686 75 ---GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALAD--EYGIKFFET 146 (205)
Q Consensus 75 ---~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~ 146 (205)
..+++++++|..... ....+..|+.. .+.|+++++||+|+..... ...........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457888999987653 22233333332 2489999999999853211 111122222222 233689999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 028686 147 SAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~ 164 (205)
|++++.|+++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 206
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=139.38 Aligned_cols=152 Identities=22% Similarity=0.205 Sum_probs=114.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hhhhcc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 74 (205)
++++++|.||+|||||+|.|++.+.. .+..|.++.|+....+.++| +.+.+.||+|..+.... ....+.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 79999999999999999999998743 56677777889989999988 77899999996543332 234467
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
.||.+++|+|.+.+.+-.+.. .+. ....+.|+++|.||.||...... .......+.+.+.+|++++.|+
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKTGEGL 364 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecCccCH
Confidence 899999999999852222211 111 23356899999999999753221 1111222357899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 155 EQVFFSIARDIKQR 168 (205)
Q Consensus 155 ~~~~~~i~~~~~~~ 168 (205)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988776
No 207
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=3.1e-18 Score=131.03 Aligned_cols=160 Identities=18% Similarity=0.098 Sum_probs=106.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY 72 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 72 (205)
.---|+++|.||+|||||+|+|++.+.. .+..+.++.......+..+ +.++.++||||... +.......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3356899999999999999999999864 2333333333333333333 46789999999542 22334555
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN 151 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (205)
+..+|+++||+|++..-.- .....++.+.. .+.|+++++||.|....... .......+..... ...+++||++|
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~-l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTV-LLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHH-HHHHHHHHHhhCCcceEEEeecccc
Confidence 7789999999999873221 11223344443 35899999999998653221 1233333333333 47999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARDIKQR 168 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~ 168 (205)
.|++.+.+.+...+.+.
T Consensus 158 ~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 158 DNVDTLLEIIKEYLPEG 174 (298)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 99999999888777554
No 208
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.79 E-value=1.8e-18 Score=130.12 Aligned_cols=148 Identities=22% Similarity=0.117 Sum_probs=94.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-------------------------------cccceeeEEEEEEEEECCEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTS-------------------------------FITTIGIDFKIRTIELDGKRIK 53 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~~~ 53 (205)
||+++|.+++|||||+++|+...-... ..+....+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 689999999999999999976431100 012222233333333433 56
Q ss_pred EEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc---cCHH
Q 028686 54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA---VPTS 130 (205)
Q Consensus 54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~---~~~~ 130 (205)
+.+|||||+.++.......+..+|++++|+|+++... .........+.. . ...++++|+||+|+.+.... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~-~-~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSL-L-GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHH-c-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8899999998877666667889999999999987531 111122222222 1 12357788999998642111 1123
Q ss_pred HHHHHHHHhC---CcEEEEcCCCCCCHHHH
Q 028686 131 KGQALADEYG---IKFFETSAKTNLNVEQV 157 (205)
Q Consensus 131 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~~ 157 (205)
+++.+...++ .+++.+||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 4455555555 45899999999998753
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=4e-18 Score=145.04 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=103.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcc----cceeeEEEEEEEE--ECCEE-----E-----EEEEEeCCChhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFI----TTIGIDFKIRTIE--LDGKR-----I-----KLQIWDTAGQERFR 66 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~----~t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~~~~ 66 (205)
...|+++|.+++|||||+++|.+..+..... ++.|..+...... ..+.. . .+.+|||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 4569999999999999999998765433222 2333222221110 00111 1 26899999999999
Q ss_pred hhhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc--C----------HHH
Q 028686 67 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV--P----------TSK 131 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~--~----------~~~ 131 (205)
.++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+... +.. . ...
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~-~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPG-WKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchh-hhhhcCchHHHHHhhhhHH
Confidence 988888899999999999997 667665532 222 46899999999998521 110 0 000
Q ss_pred -----------HHHHHHHh---------------CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 132 -----------GQALADEY---------------GIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 132 -----------~~~~~~~~---------------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
+..+.... .++++++||++|.|+++++..+...+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 00111111 2679999999999999999988765543
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=5.4e-18 Score=136.44 Aligned_cols=164 Identities=23% Similarity=0.144 Sum_probs=116.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----------hhhh-h
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-T 69 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 69 (205)
..+||+++|.|++|||||+|+|++.+- .....+.++.|.....+..+++. +.++||+|..+ |... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 368999999999999999999999873 24445556667777777777754 78889999542 2211 2
Q ss_pred hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH----HHHHHhC-CcEE
Q 028686 70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALADEYG-IKFF 144 (205)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~----~~~~~~~-~~~~ 144 (205)
...+..+|++++|+|++.+-+-.+. .....+.. .+.+++||+||+|+.+. .....++.+ ......+ ++.+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEE
Confidence 3456789999999999987554332 12222322 56899999999998663 222333332 2222222 7899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHhccc
Q 028686 145 ETSAKTNLNVEQVFFSIARDIKQRLADT 172 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~~~~~~~~~ 172 (205)
.+||+++.++.++|+.+.+....+...-
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999888776554
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=2.7e-18 Score=119.52 Aligned_cols=135 Identities=21% Similarity=0.228 Sum_probs=98.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----hhhhhhhhhccCCcEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL 80 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 80 (205)
||+++|+.|||||||+++|.+.+. .+..|....|.. .++||||.. .+..-......+||+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 679999999999999999988664 444554433331 336999965 22222333445899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~ 159 (205)
+|.|++++.+.-- ..+.... +.|+|-|++|.|+.. .....+.++++.+.-|+ ..|++|+.+|+|++++.+
T Consensus 69 ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999998654211 2333333 379999999999963 23456777888888886 579999999999999999
Q ss_pred HHH
Q 028686 160 SIA 162 (205)
Q Consensus 160 ~i~ 162 (205)
+|.
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=6.4e-18 Score=129.23 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=80.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC--------CCCc--------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF--------TTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 68 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~--------~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (205)
+|+++|.+|+|||||+++|+...- .... ...-+.........+.....++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986421 0000 001111222222333334478999999999999888
Q ss_pred hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccC
Confidence 88899999999999999886432 33445555543 3689999999999864
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.79 E-value=2.2e-18 Score=141.59 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=104.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCC---Cccc--ceeeEEEE----------------EEEEECC------EEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTT---SFIT--TIGIDFKI----------------RTIELDG------KRIK 53 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~--t~~~~~~~----------------~~~~~~~------~~~~ 53 (205)
|..++|+++|.+++|||||+++|.+...+. +... |....+.. .....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 456899999999999999999997542211 1111 11111110 0000011 1357
Q ss_pred EEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHH
Q 028686 54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKG 132 (205)
Q Consensus 54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~ 132 (205)
+.+||+||+++|...+......+|++++|+|+++..........+..+... ...|+++++||+|+.+.+. ....+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999887877888899999999998632111222222223221 1246899999999964211 1122344
Q ss_pred HHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 133 QALADEY---GIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 133 ~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.++.... +++++++||++|.|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4444432 578999999999999999999987653
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=1.3e-17 Score=142.67 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=107.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
-|+++|..++|||||+++|.+.. +.++..+.++.+.....+...+ ...+.+||+||+++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999998643 3334334444444433333322 1347999999999997777777889999999
Q ss_pred EEeCCC---hhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC-ccCHHHHHHHHHHhC---CcEEEEcCCCCCC
Q 028686 82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEYG---IKFFETSAKTNLN 153 (205)
Q Consensus 82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~g 153 (205)
|+|+++ +++.+.+ ..+.. .++| ++||+||+|+.+... ....+++.++....+ .+++++||++|.|
T Consensus 81 VVda~eg~~~qT~ehl----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 999987 4444443 22222 2355 578999999864211 112344555554444 6899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDIKQ 167 (205)
Q Consensus 154 i~~~~~~i~~~~~~ 167 (205)
++++++.|.+....
T Consensus 154 I~~L~~~L~~~~~~ 167 (614)
T PRK10512 154 IDALREHLLQLPER 167 (614)
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999875543
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=2.8e-18 Score=130.04 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=92.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC--C-----------------------------CCcccceeeEEEEEEEEECCEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF--T-----------------------------TSFITTIGIDFKIRTIELDGKRIK 53 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 53 (205)
+|+++|..++|||||+.+|+...- . .+..+.+..+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 589999999999999999964210 0 01112222333334444444 67
Q ss_pred EEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhH---HH---HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-c
Q 028686 54 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FN---NIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-A 126 (205)
Q Consensus 54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~ 126 (205)
+.+||+||+.++.......+..+|++++|+|+++.+. |. .....+.... .. ...|+++++||+|+..... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TL-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-Hc-CCCeEEEEEEccccccccccH
Confidence 9999999998887767777788999999999988421 11 1112222222 21 2368899999999963211 1
Q ss_pred ----cCHHHHHHHHHHhC-----CcEEEEcCCCCCCHH
Q 028686 127 ----VPTSKGQALADEYG-----IKFFETSAKTNLNVE 155 (205)
Q Consensus 127 ----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~ 155 (205)
...+++..+....+ ++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11222333334433 679999999999987
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.77 E-value=7.5e-18 Score=138.43 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=101.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC---CCccc--ceeeEEEEEEE----------------EEC--C----EEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT---TSFIT--TIGIDFKIRTI----------------ELD--G----KRIKLQ 55 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~--t~~~~~~~~~~----------------~~~--~----~~~~~~ 55 (205)
.++|+++|..++|||||+.+|.+...+ .+..+ |....+....+ .++ + ....+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 488999999999999999999653211 11111 22111111000 011 0 125789
Q ss_pred EEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-cCHH
Q 028686 56 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS 130 (205)
Q Consensus 56 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~ 130 (205)
+||+||+++|..........+|++++|+|++++ ++.+.+. .+... ...|+++|+||+|+.+.+.. ...+
T Consensus 89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 89 FVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 999999998876655556678999999999953 3333332 22221 12468999999998652211 1123
Q ss_pred HHHHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 131 KGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 131 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
++..+.... +++++++||+++.|+++++++|...+.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 444444332 478999999999999999999987653
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=3.1e-17 Score=121.90 Aligned_cols=147 Identities=18% Similarity=0.135 Sum_probs=95.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (205)
.++|+++|..++|||||+++|++... ..+..+... .......+......+.++||||+.++.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--i~~~~~~~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGIT--INTAHVEYETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCcc--EEeeeeEecCCCeEEEEEECcCHHHHH
Confidence 47999999999999999999986410 001122222 222233333344578899999999887
Q ss_pred hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC---
Q 028686 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG--- 140 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--- 140 (205)
......+..+|++++|+|+...-. ......+..+.. .++| +++++||+|+..... +...+++..+....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777777889999999999986421 112223333333 3466 778999999853211 112234555555443
Q ss_pred --CcEEEEcCCCCCCHH
Q 028686 141 --IKFFETSAKTNLNVE 155 (205)
Q Consensus 141 --~~~~~~Sa~~~~gi~ 155 (205)
++++.+||++|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 789999999998753
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=4.3e-17 Score=123.02 Aligned_cols=113 Identities=28% Similarity=0.263 Sum_probs=79.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCc-----------------ccceeeEEEEEEEE--E---CCEEEEEEEEeCCCh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSF-----------------ITTIGIDFKIRTIE--L---DGKRIKLQIWDTAGQ 62 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~-----------------~~t~~~~~~~~~~~--~---~~~~~~~~i~D~~g~ 62 (205)
+|+++|..++|||||+++|+........ ....+..+....+. + ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432110 01111222211111 1 355688999999999
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~ 121 (205)
.++......++..+|++++|+|+.+..++.. ..|+..+.. .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999987665532 334444332 358999999999975
No 219
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.6e-17 Score=134.97 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=119.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhc-
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYY- 73 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~- 73 (205)
|+..+|+++|.||+|||||.|+|.+.......-|..+.+...-.+...+++ +++.|+||-.... ....+++
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 677889999999999999999999988776777766656655566666644 8899999965422 2233343
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 74 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
.+.|+++-|+|+++.+-=..+ .++.+ + -+.|++++.|+.|... ..-..-+.+++.+.+|+|++++||++|+
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyl--tlQLl-E---~g~p~ilaLNm~D~A~--~~Gi~ID~~~L~~~LGvPVv~tvA~~g~ 150 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYL--TLQLL-E---LGIPMILALNMIDEAK--KRGIRIDIEKLSKLLGVPVVPTVAKRGE 150 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHH--HHHHH-H---cCCCeEEEeccHhhHH--hcCCcccHHHHHHHhCCCEEEEEeecCC
Confidence 357999999999996532222 22222 2 4689999999999753 4344566778889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028686 153 NVEQVFFSIARDIKQRL 169 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~~ 169 (205)
|++++...+++....+.
T Consensus 151 G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 151 GLEELKRAIIELAESKT 167 (653)
T ss_pred CHHHHHHHHHHhccccc
Confidence 99999999987654443
No 220
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.73 E-value=5e-17 Score=124.87 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=108.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhhh---cc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~ 74 (205)
-.|.++|.||+|||||++.|.+.+......+ |..++.. .+.+++.. .+.+-|.||.-+ .+.+-..| +.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeeccccc-eeEeccCccccccccccCcccHHHHHHHH
Confidence 3578999999999999999999875432222 2222222 33333322 388889998532 23333333 55
Q ss_pred CCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcC
Q 028686 75 GAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA 148 (205)
Q Consensus 75 ~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 148 (205)
.+..++||+|++.. ..++.+..+..++..+.. .+.|.+||+||+|+++++ ...+.+++....- .++++||
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~lq~~~V~pvsA 349 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSLAKRLQNPHVVPVSA 349 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHHHHHcCCCcEEEeee
Confidence 79999999999998 888888888888866543 568999999999985322 1224566666654 4899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARD 164 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~ 164 (205)
+.++|+.++++.+-+.
T Consensus 350 ~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 350 KSGEGLEELLNGLREL 365 (366)
T ss_pred ccccchHHHHHHHhhc
Confidence 9999999999887653
No 221
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3e-16 Score=128.35 Aligned_cols=158 Identities=20% Similarity=0.186 Sum_probs=119.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC-EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.=|+++|.-..|||||+..+-.......-...++.+..-..+.++- ..-.+.|+|||||+.|..+..+=..-+|++|+|
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 3479999999999999999998887666666666667767776642 224689999999999999998888999999999
Q ss_pred EeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHhC--CcEEEEcCCCCCCH
Q 028686 83 YDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNLNV 154 (205)
Q Consensus 83 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~gi 154 (205)
+|+++ |++.+.+ ......++|++|++||+|.++.+......+.+++ ...++ ..++++||++|+|+
T Consensus 86 Va~dDGv~pQTiEAI-------~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 86 VAADDGVMPQTIEAI-------NHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EEccCCcchhHHHHH-------HHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 99998 5555443 3333467999999999998753322222222221 22333 67999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 155 EQVFFSIARDIKQR 168 (205)
Q Consensus 155 ~~~~~~i~~~~~~~ 168 (205)
++|+..++-...-.
T Consensus 159 ~eLL~~ill~aev~ 172 (509)
T COG0532 159 DELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988777666
No 222
>PRK12735 elongation factor Tu; Reviewed
Probab=99.72 E-value=1.4e-16 Score=130.52 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=99.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC-------CC---------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~-------~~---------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (205)
.++|+++|.+++|||||+++|++. .+ ..+..+....+. ....+......+.++||||+.+|.
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHHHH
Confidence 589999999999999999999862 10 011122222233 223333334568999999999887
Q ss_pred hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCC--ccCHHHHHHHHHHhC---
Q 028686 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEYG--- 140 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--- 140 (205)
......+..+|++++|+|+.+... .....++..+. ..++|.+ +++||+|+.+.+. +...+++..+...++
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 666667788999999999987421 12222233332 2457865 5799999964211 112234555555543
Q ss_pred --CcEEEEcCCCCC----------CHHHHHHHHHHH
Q 028686 141 --IKFFETSAKTNL----------NVEQVFFSIARD 164 (205)
Q Consensus 141 --~~~~~~Sa~~~~----------gi~~~~~~i~~~ 164 (205)
++++++||.++. ++.++++.|...
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 689999999984 566666666554
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=3.2e-16 Score=116.86 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=96.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceee-EEE--EEEEEECCEEEEEEEEeCCChhhhhhh-----hhhhcc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGI-DFK--IRTIELDGKRIKLQIWDTAGQERFRTI-----TTAYYR 74 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~-~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~ 74 (205)
+++|+++|.+|+|||||+|.|++.........+.+. ... ...+... ....+.+||+||....... ....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986543322222221 111 0111111 1235899999996532211 122356
Q ss_pred CCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc----------cCHHHHHHHHH----Hh
Q 028686 75 GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRA----------VPTSKGQALAD----EY 139 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~----------~~~~~~~~~~~----~~ 139 (205)
.+|+++++.+. +|.... .|++.+... +.|+++|+||+|+...... ...++++..+. ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78988887432 233332 355555543 4799999999998431111 11122222222 21
Q ss_pred C---CcEEEEcCC--CCCCHHHHHHHHHHHHHHHhc
Q 028686 140 G---IKFFETSAK--TNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 140 ~---~~~~~~Sa~--~~~gi~~~~~~i~~~~~~~~~ 170 (205)
+ -++|.+|+. .+.|+..+.+.++..+.++.+
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 2 368899998 578999999999999887654
No 224
>PRK12736 elongation factor Tu; Reviewed
Probab=99.72 E-value=1.9e-16 Score=129.66 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=100.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
..++|+++|..++|||||+++|++... ..+..+....+. ....+......+.+||+||+++|
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHHH
Confidence 358999999999999999999986311 011122222233 33334334456889999999988
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCCcc--CHHHHHHHHHHhC--
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEYG-- 140 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~-- 140 (205)
......-+..+|++++|+|++.... .....++..+.. .++| +++++||+|+.+.+... ..+++..+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 7666666778999999999986311 111222233332 3577 67889999986422111 1234555555454
Q ss_pred ---CcEEEEcCCCCC--------CHHHHHHHHHHHH
Q 028686 141 ---IKFFETSAKTNL--------NVEQVFFSIARDI 165 (205)
Q Consensus 141 ---~~~~~~Sa~~~~--------gi~~~~~~i~~~~ 165 (205)
++++++||++|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 589999999983 4556666655543
No 225
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=3.3e-16 Score=121.71 Aligned_cols=115 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCCC---------------ccc---ceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS--FTTS---------------FIT---TIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~--~~~~---------------~~~---t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
-+|+++|.+|+|||||+++|+... .... +.+ --+..+......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998532 1100 000 00122233333444455889999999999
Q ss_pred hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
+|.......++.+|++|+|+|+++... .....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 888777778899999999999987532 122233333322 4689999999999854
No 226
>COG2262 HflX GTPases [General function prediction only]
Probab=99.72 E-value=4.8e-16 Score=123.62 Aligned_cols=159 Identities=21% Similarity=0.145 Sum_probs=113.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh---------hhhhhhhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~ 73 (205)
...|.++|..|+|||||+|+|.+........-..+.+.....+.+.+ ...+.+.||-|.- .|++..+. .
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-V 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH-h
Confidence 35789999999999999999998765433333333445555566653 2457888999953 24443332 3
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
..+|++++|+|++++...+.+..-.+.+......++|+++|.||+|+..+.. . ......... ..+.+||+++.|
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~---~~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--I---LAELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--h---hhhhhhcCC-CeEEEEeccCcC
Confidence 4799999999999998777777777777666556699999999999754222 1 111111112 578899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 028686 154 VEQVFFSIARDIKQRL 169 (205)
Q Consensus 154 i~~~~~~i~~~~~~~~ 169 (205)
++.+++.|.+.+....
T Consensus 344 l~~L~~~i~~~l~~~~ 359 (411)
T COG2262 344 LDLLRERIIELLSGLR 359 (411)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999999887543
No 227
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=3.5e-16 Score=113.80 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=106.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhhhhc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITTAYY 73 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~~ 73 (205)
..|+++|.+|||||||+|+|++.+.-.....|+|.+.....+.+++. +.+.|.|| .+++..+...|+
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 57999999999999999999998754555666676666666677653 78999999 344556666666
Q ss_pred cC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh----CCc--EE
Q 028686 74 RG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY----GIK--FF 144 (205)
Q Consensus 74 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~--~~ 144 (205)
.. ..++++++|...+-...+. +.++.+.. .++|++|++||+|-..... ........++.. ... ++
T Consensus 102 ~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~--~~k~l~~v~~~l~~~~~~~~~~~ 175 (200)
T COG0218 102 EKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSE--RNKQLNKVAEELKKPPPDDQWVV 175 (200)
T ss_pred hhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhH--HHHHHHHHHHHhcCCCCccceEE
Confidence 53 4577788888764433222 23333333 4699999999999754211 112223333222 233 78
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHH
Q 028686 145 ETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
..|+.++.|++++...|.+.+..
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEecccccCHHHHHHHHHHHhhc
Confidence 89999999999999988877654
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.71 E-value=7.5e-17 Score=121.95 Aligned_cols=167 Identities=16% Similarity=0.233 Sum_probs=106.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCc---ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-----hhhhhhccCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSF---ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TITTAYYRGA 76 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~ 76 (205)
||+++|+.+|||||+.+.+..+-.+... .+|.. .....+... ..+.+.+||+||+..+. ......++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~--ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTID--VEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----S--EEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCC--ceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 7999999999999998888876433222 23333 222333322 23689999999987543 3467789999
Q ss_pred cEEEEEEeCCChhH---HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-c----CHHHHHHHHHHhC---CcEEE
Q 028686 77 MGILLVYDVTDESS---FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-V----PTSKGQALADEYG---IKFFE 145 (205)
Q Consensus 77 d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~---~~~~~ 145 (205)
.++|||+|+...+- +..+...+..+.+.. +++.+.+.++|+|+..++.+ . ..+.+.+.+...+ +.++.
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 99999999995443 333444444455444 78999999999998642211 1 1222333344445 78999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 028686 146 TSAKTNLNVEQVFFSIARDIKQRLADTDSRS 176 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~ 176 (205)
+|..+. .+-++|..+++.+.++.+..+...
T Consensus 157 TSI~D~-Sly~A~S~Ivq~LiP~~~~le~~L 186 (232)
T PF04670_consen 157 TSIWDE-SLYEAWSKIVQKLIPNLSTLENLL 186 (232)
T ss_dssp E-TTST-HHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred ccCcCc-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 999985 899999999999988777665543
No 229
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=2.4e-16 Score=123.04 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=95.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCC----------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh----
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---- 67 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 67 (205)
..++|+++|.+|+|||||+|+|++..+... ..+|.........+..++..+.+.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999999875433 345556666666677788888999999999432110
Q ss_pred ----------------------hhhhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686 68 ----------------------ITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123 (205)
Q Consensus 68 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~ 123 (205)
.....+. .+|+++|+++.+.. .+.... ++.+.... .++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D--~~~lk~l~-~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLD--IEFMKRLS-KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHH--HHHHHHHh-ccCCEEEEEECCCcCCH
Confidence 0112233 46777777776642 111110 22233332 25899999999998531
Q ss_pred -CCccCHHHHHHHHHHhCCcEEEEcCCC
Q 028686 124 -KRAVPTSKGQALADEYGIKFFETSAKT 150 (205)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (205)
+.....+.+.+.+..+++++|.....+
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 222345556677788889988776543
No 230
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=1e-15 Score=116.09 Aligned_cols=152 Identities=16% Similarity=0.089 Sum_probs=94.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCccc-----------------------ceeeEEEE---------------EEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFIT-----------------------TIGIDFKI---------------RTIE 46 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-----------------------t~~~~~~~---------------~~~~ 46 (205)
||+++|+.++|||||+++|..+.+...... ..+.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987655321110 01111000 0111
Q ss_pred ECCEEEEEEEEeCCChhhhhhhhhhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 47 LDGKRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 47 ~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
.. ...+.++|+||+++|.......+ ..+|++++|+|+..... .....++..+.. .++|+++|+||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 11 24688999999998865444334 36899999999876432 222233344433 358999999999985421
Q ss_pred -CccCHHHHHHHHHH--------------------------hCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 125 -RAVPTSKGQALADE--------------------------YGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 125 -~~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
.....+++.++... ..+++|.+||.+|.|++++...|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11112222222221 124899999999999999998774
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=9.7e-16 Score=118.57 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=110.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-----hhhh---hh-hhhcc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRT---IT-TAYYR 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~---~~-~~~~~ 74 (205)
..|+|.|.||||||||++.+.+.+......|.++.....-.+..++ ..++++||||.- +.+. .. .++-.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 4689999999999999999999987755555444344444444433 678999999931 1111 11 11122
Q ss_pred CCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCC
Q 028686 75 GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN 151 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (205)
-+++++|++|.+... +.+.-..+++.+..... .|+++|.||+|+.+. ...+++.......+ .....+++..+
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKISATKG 321 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhccccccceeeeeh
Confidence 478899999998743 56777778999988874 899999999998542 22344444344444 44778999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 028686 152 LNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~ 169 (205)
.+++.+-..+...+.+..
T Consensus 322 ~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 322 CGLDKLREEVRKTALEPL 339 (346)
T ss_pred hhHHHHHHHHHHHhhchh
Confidence 999988888887765543
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=2.6e-16 Score=118.92 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=82.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC--CCC--------------cccceeeEEEEEEEEEC--------CEEEEEEEEeCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF--TTS--------------FITTIGIDFKIRTIELD--------GKRIKLQIWDTA 60 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~--~~~--------------~~~t~~~~~~~~~~~~~--------~~~~~~~i~D~~ 60 (205)
+|+++|..++|||||+.+|+...- ... ......+......+.+. ++.+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999976431 100 01111111111122222 446889999999
Q ss_pred ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686 61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131 (205)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 131 (205)
|+.+|.......++.+|++++|+|+.+..+.... ..+.... ..++|+++++||+|+...+..+..++
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~---~~~~p~ilviNKiD~~~~e~~~~~~~ 148 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL---KERVKPVLVINKIDRLILELKLSPEE 148 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCcchhhhcCCHHH
Confidence 9999999899999999999999999986544332 2222222 24689999999999864334444333
No 233
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.70 E-value=4.2e-16 Score=127.75 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=93.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC-------C---------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
..++|+++|..++|||||+++|++.. . ..+..+....+. ..+.+......+.+|||||+++|
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchHHH
Confidence 35899999999999999999997430 0 011123333333 33334444467899999999988
Q ss_pred hhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCC--ccCHHHHHHHHHHh
Q 028686 66 RTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEY 139 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~--~~~~~~~~~~~~~~ 139 (205)
..........+|++++|+|+... ++.+ ++..+.. .++|.+ +++||+|+.+.+. +...++++++....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e----~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTRE----HILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH----HHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 76666666789999999999873 3332 2233332 357765 6799999864221 11123566666655
Q ss_pred C-----CcEEEEcCCCCC
Q 028686 140 G-----IKFFETSAKTNL 152 (205)
Q Consensus 140 ~-----~~~~~~Sa~~~~ 152 (205)
+ ++++++||+++.
T Consensus 162 ~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCccCccEEECcccccc
Confidence 4 789999999874
No 234
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=6.3e-17 Score=113.05 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=115.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.=|++++|-.|+|||||++.|.+.... .+.||.- ..+..+.+.+ ++++-+|.+|+-..+..|..++..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc-ccCCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 358999999999999999999887642 2233332 2233444544 7789999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH---HHhC--------------CcEE
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA---DEYG--------------IKFF 144 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~--------------~~~~ 144 (205)
+|+-+.+-|.+.+..++.+.... -..+|+++.+||+|.+.+ ..+++.+... +..+ +..+
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a---~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA---ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc---ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 99999999998888777775443 267999999999998654 2444433221 1111 4578
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q 028686 145 ETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~ 164 (205)
.||...+.+.-+.|.|+...
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 89998888888888887653
No 235
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.68 E-value=4.4e-16 Score=129.01 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=99.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--C-----------------------------CCCcccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (205)
.++|+++|..++|||||+.+|+... . ..+......++.... .+....
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~--~~~~~~ 84 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW--KFETTK 84 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE--EecCCC
Confidence 4789999999999999999986421 0 011122222233222 233344
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHH-------HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN-------NIRNWIRNIEQHASDNVN-KVLVGNKADMDES 123 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~ 123 (205)
..+.++|+||+++|.......+..+|++|+|+|+++. +|+ .+...+..+. ..++| +++++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCCch
Confidence 6789999999999998888889999999999999873 232 2222222222 24574 6888999998521
Q ss_pred CC-----ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686 124 KR-----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 124 ~~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (205)
.. ....++++.++.+.+ ++++++||++|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 122455667777665 6799999999999864
No 236
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.68 E-value=1.5e-15 Score=116.37 Aligned_cols=166 Identities=14% Similarity=0.103 Sum_probs=104.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh------------hhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------------FRTITT 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~~~~~~ 70 (205)
-++|+++|.||+|||||.|.+++.++......+.+.... ..--+.....++.|+||||... +.....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~-ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR-ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee-eeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 378999999999999999999999865443332221111 1112223456899999999421 111234
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC------------CccCHHHHHHHHHH
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------------RAVPTSKGQALADE 138 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~ 138 (205)
..+.+||.+++|+|+++.-.... .+.+..+..+ ..+|-++|.||.|..... ..+.. -..++.++
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~kl~v~~~ 226 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-LKLEVQEK 226 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccch-hhhhHHHH
Confidence 45678999999999997332222 1234445555 358999999999964311 11110 01122222
Q ss_pred h-------------CC----cEEEEcCCCCCCHHHHHHHHHHHHHHHhcccC
Q 028686 139 Y-------------GI----KFFETSAKTNLNVEQVFFSIARDIKQRLADTD 173 (205)
Q Consensus 139 ~-------------~~----~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~ 173 (205)
+ |+ .+|.+||++|+||+++-++|...+....-+++
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~ 278 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP 278 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence 2 12 38999999999999999999988766544443
No 237
>CHL00071 tufA elongation factor Tu
Probab=99.68 E-value=1.5e-15 Score=124.94 Aligned_cols=147 Identities=17% Similarity=0.104 Sum_probs=95.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
..++|+++|.+++|||||+++|++..- ..+..+....+... ..+......+.++||||+.+|
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCCeEEEEEECCChHHH
Confidence 358999999999999999999987411 11112333333222 233333456789999999888
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC--
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG-- 140 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-- 140 (205)
.......+..+|++++|+|+..... ......+..+.. .++| +++++||+|+.+.+. +...+++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 7666677789999999999986421 222223333332 3578 678899999864221 112234555555443
Q ss_pred ---CcEEEEcCCCCCCH
Q 028686 141 ---IKFFETSAKTNLNV 154 (205)
Q Consensus 141 ---~~~~~~Sa~~~~gi 154 (205)
++++.+||.+|.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 68999999998743
No 238
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=5.5e-16 Score=120.95 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=89.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCc------------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (205)
+|+++|.+|+|||||+++|+...-.... ............+.+++ ..+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999764211000 00111112222333443 678999999999888
Q ss_pred hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEE
Q 028686 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 146 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (205)
......+..+|++++|+|+++.........| ..+.. .++|.++++||+|+.... ..+....+...++.+++.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD---FDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC---HHHHHHHHHHHhCCCeEEE
Confidence 7788889999999999999886544322222 33332 468999999999986431 2233344445555444433
Q ss_pred --cCCCCCCHH
Q 028686 147 --SAKTNLNVE 155 (205)
Q Consensus 147 --Sa~~~~gi~ 155 (205)
...++.++.
T Consensus 152 ~ip~~~~~~~~ 162 (268)
T cd04170 152 QLPIGEGDDFK 162 (268)
T ss_pred EecccCCCcee
Confidence 344544443
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=1.7e-15 Score=117.84 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=78.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC--CC----------------CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS--FT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~--~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (205)
+|+++|.+++|||||+++|+... .. .+..+.+..+.....+.++ ..++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 58999999999999999997521 10 1112222223333344444 4678999999999888
Q ss_pred hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~ 123 (205)
..+...++.+|++++|+|+.+...- ....++..+.. .++|+++++||+|+.+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~---~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADR---YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 8888899999999999999874221 11223333332 45899999999998653
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.67 E-value=1.7e-15 Score=127.58 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=78.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCC----------C-c-------ccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT----------S-F-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~----------~-~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
..+|+++|.+++|||||+++|+... ... . . ...-+..+......+....+.+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 4589999999999999999997421 100 0 0 001122233332333334578999999999
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.+|.......++.+|++|+|+|+++... .....++..... .++|+++++||+|+..
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence 9988777778899999999999987421 123334443332 4699999999999754
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.67 E-value=1.4e-15 Score=126.90 Aligned_cols=152 Identities=20% Similarity=0.107 Sum_probs=93.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCC--CC-------------------------------CcccceeeEEEEEEEEEC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSF--TT-------------------------------SFITTIGIDFKIRTIELD 48 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~--~~-------------------------------~~~~t~~~~~~~~~~~~~ 48 (205)
..++|+++|..++|||||+++|+...- .. +......++.....+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~- 104 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST- 104 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-
Confidence 458999999999999999999976431 11 00111222333333333
Q ss_pred CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC
Q 028686 49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128 (205)
Q Consensus 49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~ 128 (205)
....+.+|||||+++|.......+..+|++++|+|+...-.- .....+..+... . ..|+++++||+|+.+.+....
T Consensus 105 -~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 105 -EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRRHSFIATLL-G-IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred -CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchHHHHHHHHh-C-CCceEEEEEeeccccchhHHH
Confidence 345789999999998865555556899999999999764211 111111122221 1 247889999999864222111
Q ss_pred ---HHHHHHHHHHh----CCcEEEEcCCCCCCHHHHH
Q 028686 129 ---TSKGQALADEY----GIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 129 ---~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~~~ 158 (205)
.+++..+.... .++++++||++|.|++++-
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 12222333333 3789999999999998653
No 242
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=9e-16 Score=133.90 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=80.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--------CC------------CcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF--------TT------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~--------~~------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
..+|+++|..++|||||+++|+...- .. .+..|.. .....+.++ ...+.+|||||+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~~--~~~i~liDtPG~ 83 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDWD--NHRINLIDTPGH 83 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEEC--CEEEEEEECCCc
Confidence 46999999999999999999985321 00 0111221 222233343 478999999999
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.++...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99988889999999999999999987655544333 33332 4689999999999865
No 243
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=3.3e-15 Score=125.86 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=78.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCCC------------------cccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTS------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
..+|+++|.+++|||||+++|+... .... ....-+..+......++...+.+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 4689999999999999999986421 1100 0011122333333444445588999999999
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~ 121 (205)
.+|.......+..+|++|+|+|+++.- ......+++.... .++|+++++||+|+.
T Consensus 91 ~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 91 EDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 988876677888999999999998741 1223334443332 468999999999974
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.4e-15 Score=124.18 Aligned_cols=160 Identities=23% Similarity=0.207 Sum_probs=115.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC---------------CCCCcccceeeEEEEEEE-EECCEEEEEEEEeCCChhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~---------------~~~~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~ 67 (205)
-++.++-.-..|||||..+|+... .+.+....++.-.....+ ..+++.+.+.++|||||.+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 367889999999999999996532 111233333322222222 2236778999999999999999
Q ss_pred hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686 68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
...+.+..++++++|+|++..-.-..+..++..+ ..+..+|.|+||+|++.++.+....++.++....+.+++.+|
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS 216 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLAF----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS 216 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHHHHHHH----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence 9999999999999999999853323232223222 256889999999999876555555555555555567899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 028686 148 AKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 148 a~~~~gi~~~~~~i~~~~~~ 167 (205)
|++|.|++++++.+++.+..
T Consensus 217 AK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 217 AKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred eccCccHHHHHHHHHhhCCC
Confidence 99999999999999988754
No 245
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.66 E-value=2.1e-15 Score=123.98 Aligned_cols=148 Identities=23% Similarity=0.151 Sum_probs=92.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CC-------------------------------CcccceeeEEEEEEEEECCE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSF--TT-------------------------------SFITTIGIDFKIRTIELDGK 50 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~--~~-------------------------------~~~~t~~~~~~~~~~~~~~~ 50 (205)
+||+++|..++|||||+.+|+...- .. +.......+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 5899999999999999999975421 10 011111223333333333
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC--
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-- 128 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~-- 128 (205)
...+.+|||||+++|.......+..+|++++|+|+.....- .....+..+... ...++++++||+|+.+.+....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHHHHHHHc--CCCcEEEEEEecccccchHHHHHH
Confidence 35789999999998876666677899999999999764211 111111222221 1236888999999864222111
Q ss_pred -HHHHHHHHHHhC---CcEEEEcCCCCCCHHH
Q 028686 129 -TSKGQALADEYG---IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 129 -~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 156 (205)
.++...+....+ ++++++||++|.|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122333334433 5799999999999986
No 246
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2.6e-15 Score=116.71 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=108.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhh---hccCCc
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGAM 77 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~d 77 (205)
.|.++|.|++|||||++.+...+......|.++.....-.+.+. ..-.+.+-|.||.-+ -..+-.. .+.++-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 57899999999999999999987543333333322222233332 223588889998432 1222222 345788
Q ss_pred EEEEEEeCCChh---HHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEE-EcCCCC
Q 028686 78 GILLVYDVTDES---SFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE-TSAKTN 151 (205)
Q Consensus 78 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~ 151 (205)
++++|+|++..+ ..++......++..+.. .+.|.+||+||+|++.+ .+...+....+.+..++..+. +|+.++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 999999998644 46666666777766542 57899999999997542 212222233344444543222 999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 028686 152 LNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~ 170 (205)
.|++++...+.+.+.+...
T Consensus 319 ~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 319 EGLDELLRALAELLEETKA 337 (369)
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999999998887753
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=99.65 E-value=7.7e-15 Score=122.21 Aligned_cols=146 Identities=17% Similarity=0.091 Sum_probs=95.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC------C----------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~------~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
..++|+++|.+++|||||+++|++.. . ..+.......+.....+..++ ..+.++|+||+.+|
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~f 157 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADY 157 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHHH
Confidence 35899999999999999999998621 0 112223333333333333333 56899999999998
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHh---
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEY--- 139 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~--- 139 (205)
.......+..+|++++|+|+.+... .....++..+.. .++| +++++||+|+.+.+. +...+++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 7777777788999999999886422 222233333332 3577 778899999864211 11122445555443
Q ss_pred --CCcEEEEcCCCCCC
Q 028686 140 --GIKFFETSAKTNLN 153 (205)
Q Consensus 140 --~~~~~~~Sa~~~~g 153 (205)
+++++.+|+.++.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 47899999988853
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=8.8e-15 Score=116.02 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=56.7
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCC------CCcccceeeEEEEEE---------------EEECC-EEEEEEEEeCCCh-
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRT---------------IELDG-KRIKLQIWDTAGQ- 62 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~- 62 (205)
|+++|.|+||||||+++|.+.... .+..|+.|..+.... ...++ +.+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999988743 222344443333211 01222 3478999999997
Q ss_pred ---hhhhhhhhhh---ccCCcEEEEEEeCC
Q 028686 63 ---ERFRTITTAY---YRGAMGILLVYDVT 86 (205)
Q Consensus 63 ---~~~~~~~~~~---~~~~d~~i~v~d~~ 86 (205)
++...+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455555554 88999999999997
No 249
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=9.3e-15 Score=119.56 Aligned_cols=157 Identities=18% Similarity=0.148 Sum_probs=113.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
=|.++|.-.-|||||+..|-+..+.......++....-..+.+... -.++|.||||+..|..|..+-..-+|++++|+.
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 3789999999999999999888776555554544444444544422 568899999999999999988889999999999
Q ss_pred CCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH---HHHHhC--CcEEEEcCCCCCCHHH
Q 028686 85 VTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA---LADEYG--IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 85 ~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~~Sa~~~~gi~~ 156 (205)
++| +++. +.|......++|++|.+||+|.++.+..-...++.. ....+| ++++++||++|+|++.
T Consensus 234 adDGVmpQT~-------EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~ 306 (683)
T KOG1145|consen 234 ADDGVMPQTL-------EAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDL 306 (683)
T ss_pred ccCCccHhHH-------HHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHH
Confidence 988 4444 444444457899999999999765322111111111 122333 7899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028686 157 VFFSIARDIKQRL 169 (205)
Q Consensus 157 ~~~~i~~~~~~~~ 169 (205)
|-+.++-.+.-+.
T Consensus 307 L~eaill~Ae~md 319 (683)
T KOG1145|consen 307 LEEAILLLAEVMD 319 (683)
T ss_pred HHHHHHHHHHHhh
Confidence 9988777665443
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.64 E-value=2.8e-15 Score=124.30 Aligned_cols=149 Identities=16% Similarity=0.086 Sum_probs=96.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CC-----------------------------CCcccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FT-----------------------------TSFITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (205)
.++|+++|..++|||||+.+|+... .. ++.......+.....+ ....
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--~~~~ 84 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETPK 84 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--ccCC
Confidence 4889999999999999999997621 10 1112222333333333 3344
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HH---HHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK 124 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~ 124 (205)
..+.++|+||+.+|.......+..+|++++|+|++... .| ......+..+.. .++| +|+++||+|.....
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccch
Confidence 67899999999999877777788999999999998642 11 122222233322 3566 67899999953211
Q ss_pred -----CccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686 125 -----RAVPTSKGQALADEYG-----IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 125 -----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (205)
.....+++..+....+ ++++.+|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1122333444444333 6799999999999864
No 251
>PRK00049 elongation factor Tu; Reviewed
Probab=99.63 E-value=1.2e-14 Score=119.18 Aligned_cols=157 Identities=16% Similarity=0.122 Sum_probs=98.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCC----------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
..++|+++|..++|||||+++|++... ..+..+....+.. ...+......+.++||||+.+|
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHHH
Confidence 458999999999999999999987310 0111233333333 3333333456889999999887
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCc--cCHHHHHHHHHHh---
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRA--VPTSKGQALADEY--- 139 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~~--~~~~~~~~~~~~~--- 139 (205)
.......+..+|++++|+|+..... .....++..+.. .++|.+ +++||+|+.+.... ....++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 7666667789999999999987422 222233333333 357876 57999998642111 1122344444433
Q ss_pred --CCcEEEEcCCCCC----------CHHHHHHHHHHH
Q 028686 140 --GIKFFETSAKTNL----------NVEQVFFSIARD 164 (205)
Q Consensus 140 --~~~~~~~Sa~~~~----------gi~~~~~~i~~~ 164 (205)
+++++.+||+++. ++.++++.|...
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3689999999875 345555555543
No 252
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=1.3e-14 Score=99.12 Aligned_cols=105 Identities=23% Similarity=0.264 Sum_probs=68.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh----------hhhhhhhhc
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYY 73 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~ 73 (205)
+|+|+|.+|+|||||+|+|++... .....+..........+.+++.. +.++||||... ...... .+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLE-QI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence 689999999999999999998643 11222222222333455566644 57999999532 112233 34
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 117 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK 117 (205)
..+|++++|+|.+++.. +....+++.+. .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 78999999999877422 22233334442 46899999998
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=5.7e-15 Score=127.69 Aligned_cols=150 Identities=23% Similarity=0.135 Sum_probs=93.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCC---------------------------------cccceeeEEEEEEEEEC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIELD 48 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~~ 48 (205)
..++|+++|.+++|||||+++|+...-... .......+.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 358999999999999999999986431100 00111112222223333
Q ss_pred CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-
Q 028686 49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV- 127 (205)
Q Consensus 49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~- 127 (205)
...+.++||||+++|.......+..+|++++|+|+.....- .....+..+... ...|++|++||+|+.+.+...
T Consensus 103 --~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 103 --KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred --CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence 35678999999998766555667899999999999764221 111112222222 125788899999986422211
Q ss_pred --CHHHHHHHHHHhC---CcEEEEcCCCCCCHHH
Q 028686 128 --PTSKGQALADEYG---IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 128 --~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~ 156 (205)
...++.++....+ ++++++||++|.|+++
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1122333344444 4699999999999884
No 254
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=9.7e-15 Score=117.73 Aligned_cols=157 Identities=24% Similarity=0.239 Sum_probs=111.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC---------------CCCCcccceeeEEEEEEEEE---CCEEEEEEEEeCCChhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS---------------FTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~---------------~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~ 65 (205)
-+..++..-..|||||..||+... .+-+....+++-.....+.+ +|..+.++++|||||.+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 357888888999999999996532 11123333332222222322 567899999999999998
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC---Cc
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG---IK 142 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~ 142 (205)
.-...+.+..|.++++|+|++..-.-..+...+..+. .+.-++-|+||+||+.++.+-.. +++..-.| -.
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adpervk---~eIe~~iGid~~d 162 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADPERVK---QEIEDIIGIDASD 162 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCHHHHH---HHHHHHhCCCcch
Confidence 8777888888999999999998543334434444443 46889999999999865443333 33444455 35
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 143 FFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 143 ~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
.+.+||++|.||+++++.|++.+..
T Consensus 163 av~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 163 AVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred heeEecccCCCHHHHHHHHHhhCCC
Confidence 7899999999999999999988754
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=2.7e-15 Score=108.98 Aligned_cols=115 Identities=18% Similarity=0.328 Sum_probs=71.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE-CCEEEEEEEEeCCChhhhhhhhhh---hccCCcEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMGI 79 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~~ 79 (205)
-.|+++|++|+|||+|..+|..+....+..+. ..... ..+ +...-.+.++|+||+.+.+..... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 35899999999999999999999765554443 22221 111 122335889999999987754433 47789999
Q ss_pred EEEEeCCC-hhHHHHHHH-HHHHHHhhc--CCCCcEEEEEeCCCCCC
Q 028686 80 LLVYDVTD-ESSFNNIRN-WIRNIEQHA--SDNVNKVLVGNKADMDE 122 (205)
Q Consensus 80 i~v~d~~~-~~s~~~~~~-~~~~i~~~~--~~~~piiiv~nK~Dl~~ 122 (205)
|||+|.+. ...+.++.. ++..+.... ...+|++|+.||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999974 444554443 444443322 36799999999999865
No 256
>PLN03127 Elongation factor Tu; Provisional
Probab=99.60 E-value=2.5e-14 Score=118.54 Aligned_cols=158 Identities=16% Similarity=0.079 Sum_probs=95.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC------CC----------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG------SF----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~------~~----------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
..++|+++|..++|||||+++|.+. .. ..+..+....+..... +......+.++||||+.+|
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGHADY 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCccch
Confidence 3589999999999999999999632 10 1122233333433333 3333456899999999887
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHh---
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEY--- 139 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~--- 139 (205)
..........+|++++|+|+.+... ......+..+.. .++| +++++||+|+.+.+. +....++.++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 6555555667999999999976421 112222233332 4588 567899999864211 00112333333322
Q ss_pred --CCcEEEEcCC---CCCC-------HHHHHHHHHHHH
Q 028686 140 --GIKFFETSAK---TNLN-------VEQVFFSIARDI 165 (205)
Q Consensus 140 --~~~~~~~Sa~---~~~g-------i~~~~~~i~~~~ 165 (205)
.++++.+|+. ++.| +.++++.+...+
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2678888876 4444 566666665543
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.60 E-value=5.1e-14 Score=108.87 Aligned_cols=153 Identities=20% Similarity=0.155 Sum_probs=107.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----h---hhhhhhccCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----R---TITTAYYRGA 76 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~ 76 (205)
-.++++|.|++|||||++.|.+.+......+.++.+..+--+.+++ .++++.|+||.-.- + ...-..+++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 4689999999999999999999886655455444445555556655 77999999984321 1 2345568899
Q ss_pred cEEEEEEeCCChhH-HHHHHHHHHHHHhhcC-------------------------------------------------
Q 028686 77 MGILLVYDVTDESS-FNNIRNWIRNIEQHAS------------------------------------------------- 106 (205)
Q Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~------------------------------------------------- 106 (205)
|++++|+|+....+ .+.+...+...-...+
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999986554 4444333322100000
Q ss_pred ----------------CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 107 ----------------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 107 ----------------~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.=+|.++|.||.|+.. .++...+.+.. .++.+||..+.|++++.+.|-+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0257789999999853 35555555544 7899999999999999999888764
No 258
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.3e-14 Score=117.52 Aligned_cols=165 Identities=21% Similarity=0.176 Sum_probs=110.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hh--------hhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FR--------TITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~--------~~~~~~ 72 (205)
-+.|+++|.||+|||||+|.|.+.+.. ....|.++.|.....++++| +++.+.||+|-.+ -. ......
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 378999999999999999999998743 45556666677778888888 6789999999543 11 113445
Q ss_pred ccCCcEEEEEEeCC--ChhHHHHHHHHHHHHHhhc------CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC---C
Q 028686 73 YRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHA------SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG---I 141 (205)
Q Consensus 73 ~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~------~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 141 (205)
+..+|++++|+|+. +-++-..+...++...... ....|++++.||.|+...-....... ..+....+ .
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence 67899999999993 3333333333333332211 13479999999999865311111111 11111122 2
Q ss_pred -cEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 142 -KFFETSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 142 -~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
.+.++|+++++|++.+.+.+...+.....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 34569999999999999999988876554
No 259
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.59 E-value=1.8e-14 Score=119.39 Aligned_cols=162 Identities=12% Similarity=0.091 Sum_probs=100.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeE--EEEEE-------------EEECC---------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGID--FKIRT-------------IELDG--------------- 49 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~--~~~~~-------------~~~~~--------------- 49 (205)
.++|.++|.-..|||||+.+|.+... .++.......+ |.... .....
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 37899999999999999999987532 11211111111 11000 00000
Q ss_pred -EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-cc
Q 028686 50 -KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AV 127 (205)
Q Consensus 50 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~ 127 (205)
....+.++|+||+++|......-+..+|++++|+|+++.-.-......+..+. .. .-.|+++++||+|+.+... ..
T Consensus 114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~~~~~ 191 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEAQAQD 191 (460)
T ss_pred cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHHHHHH
Confidence 01357899999999987766667778999999999986311111122222222 21 1246889999999864211 11
Q ss_pred CHHHHHHHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 128 PTSKGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 128 ~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
..+++.++... .+++++++||++|.|+++|++.|.+.+.
T Consensus 192 ~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 192 QYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 12333333332 2578999999999999999999887553
No 260
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.59 E-value=9.8e-14 Score=103.42 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=97.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc--ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--------hh---hh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TI---TT 70 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~---~~ 70 (205)
++|+++|.+|+|||||+|.|++....... .+..+.........+++ ..+.++||||..+.. .+ ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 48999999999999999999988643222 11122222233334455 468999999954321 11 12
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCC--CCcEEEEEeCCCCCCCCC-c----cCHHHHHHHHHHhCCcE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKR-A----VPTSKGQALADEYGIKF 143 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~ 143 (205)
......|++++|+++.. -+-++ ...++.+....++ -.++++++++.|...... + ......+.+.+..+-.|
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22457899999999876 22111 2233344333321 257889999988543210 0 01244556666666666
Q ss_pred EEEcC-----CCCCCHHHHHHHHHHHHHHH
Q 028686 144 FETSA-----KTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 144 ~~~Sa-----~~~~gi~~~~~~i~~~~~~~ 168 (205)
+..+. ..+.+++++++.+.+.+.++
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 66654 44677889999888888763
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=2.4e-13 Score=118.64 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=80.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--C------C----------CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--F------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~------~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (205)
..+|+++|.+++|||||+++|+... . . .+..+.+..+.....+.+++ ..+.++||||+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHH
Confidence 4689999999999999999997531 1 0 01123333344444455554 6789999999988
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
+...+...++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88788888999999999999987532221 122333332 4689999999999864
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=8.3e-14 Score=121.55 Aligned_cols=115 Identities=19% Similarity=0.085 Sum_probs=80.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC------------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (205)
..+|+++|.+++|||||+++|+...-.. +..+.+..+.....+.+++ ..+.+|||||+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence 3589999999999999999997532100 0012223333334444544 6799999999998
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~ 123 (205)
+.......++.+|++++|+|+.+....... .++..+.. .++|+++++||+|+...
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 877788889999999999999875443322 23333332 45899999999998653
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.55 E-value=2.9e-13 Score=110.45 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=56.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-Cc-----ccceeeEEEEEEE---------------EEC-CEEEEEEEEeCCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SF-----ITTIGIDFKIRTI---------------ELD-GKRIKLQIWDTAG 61 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~-----~~t~~~~~~~~~~---------------~~~-~~~~~~~i~D~~g 61 (205)
++|+++|.|++|||||+|+|.+..... .+ .|+.|..+....+ ..+ ...+.+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999887643 22 2223322211100 011 1336799999999
Q ss_pred h----hhhhhhhhhh---ccCCcEEEEEEeCC
Q 028686 62 Q----ERFRTITTAY---YRGAMGILLVYDVT 86 (205)
Q Consensus 62 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 86 (205)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3344555556 88999999999996
No 264
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=1.4e-13 Score=119.92 Aligned_cols=108 Identities=21% Similarity=0.154 Sum_probs=75.2
Q ss_pred ECCCCCcHHHHHHHHHhCCCC--C----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh
Q 028686 9 FERGGVGKSCLLLRFSDGSFT--T----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT 70 (205)
Q Consensus 9 ~G~~~~GKtsli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 70 (205)
+|.+++|||||+++|+...-. . +..+.+........+.+++ +.+.+|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999653210 0 0112222333334444544 7799999999998877788
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
..+..+|++++|+|++......... .+..+.. .++|+++++||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH---cCCCEEEEEECCCCCC
Confidence 8899999999999998865544332 2233332 4689999999999854
No 265
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.53 E-value=1.4e-13 Score=94.62 Aligned_cols=114 Identities=26% Similarity=0.293 Sum_probs=83.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcc-cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
+||+++|+.|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777654333 3333 223334566778999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (205)
|+..++++++.+ |...+......++|+++++||.|+.+.. .+..++.. .+++.|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999999776 8888776666678999999999984422 33333332 45567888888874
No 266
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.4e-13 Score=98.47 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=99.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhcc---CCcEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGILL 81 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i~ 81 (205)
.|+++|+.+||||+|.-+|..+.....+.+... ..-...+.. -.++++|.||+++.+.-...++. .+-+++|
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 589999999999999999999865443333221 112222322 23789999999988876666666 7999999
Q ss_pred EEeCCC-hhHHHHH-HHHHHHHHhh--cCCCCcEEEEEeCCCCCCCCCc-----cCHHHHHHHHH---------------
Q 028686 82 VYDVTD-ESSFNNI-RNWIRNIEQH--ASDNVNKVLVGNKADMDESKRA-----VPTSKGQALAD--------------- 137 (205)
Q Consensus 82 v~d~~~-~~s~~~~-~~~~~~i~~~--~~~~~piiiv~nK~Dl~~~~~~-----~~~~~~~~~~~--------------- 137 (205)
|+|... .....++ ..+++-+... ....+|++|+-||.|+.-+... ..+.|+..+..
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999764 2223333 3355555544 2467899999999998543211 01111111111
Q ss_pred -----------------HhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 138 -----------------EYGIKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 138 -----------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
...+.+.++|++++ +++++-+|+.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 01255788899988 899999998764
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.52 E-value=5.4e-13 Score=116.42 Aligned_cols=114 Identities=18% Similarity=0.079 Sum_probs=78.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC--CCCC----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG--SFTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~--~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (205)
..+|+++|.+++|||||+++|+.. .... +..+.+..+.....+.+.+ ..+.++||||+.+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~ 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVD 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHH
Confidence 359999999999999999999742 1100 0123333344444455544 6789999999988
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
+.......++.+|++++|+|+...-..... ..+..+.. .++|+++++||+|+.+
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 776677778899999999998764322221 22233332 4689999999999864
No 268
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.52 E-value=1.2e-12 Score=104.32 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=86.6
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKVLVGNKAD 119 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D 119 (205)
.+.+.+||++|+...+..|.+++.+++++|||+|+++. ..+.+....++.+.... ..+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 47799999999999999999999999999999999874 34555555555554432 26799999999999
Q ss_pred CCCC--------------CC-ccCHHHHHHHHHH----------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 120 MDES--------------KR-AVPTSKGQALADE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 120 l~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
+... .. ....+++..+... ..+..+.++|.+..+++.+|+.+.+.+....
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 5321 11 2234444443321 1255667889999999999999988887754
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.2e-13 Score=109.99 Aligned_cols=150 Identities=19% Similarity=0.151 Sum_probs=97.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC-------------------------------CCCCcccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 51 (205)
.++++++|...+|||||+-+|+..- ..++......++.....+..+ .
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~--k 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD--K 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC--C
Confidence 4899999999999999999996541 112233333333443444333 3
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHHHHHHHHHH--HHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDESKRA 126 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~--i~~~~~~~~piiiv~nK~Dl~~~~~~ 126 (205)
+.+.|+|+||+.+|-.....-...||++|+|+|+.+.+ +|.--.+..+. +.+..+ --.+||++||+|+.+-+ +
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd-e 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD-E 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC-H
Confidence 57999999999988877777788999999999998864 22211222222 222221 23567779999987521 1
Q ss_pred cCHHH----HHHHHHHhC-----CcEEEEcCCCCCCHHH
Q 028686 127 VPTSK----GQALADEYG-----IKFFETSAKTNLNVEQ 156 (205)
Q Consensus 127 ~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~~ 156 (205)
...++ +..+.+..| ++++++|+..|.|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 11222 233344443 6799999999999764
No 270
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.51 E-value=6e-13 Score=118.70 Aligned_cols=146 Identities=19% Similarity=0.221 Sum_probs=99.0
Q ss_pred CcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE-----------EE-----EEEEEeCCChhhhhhhhhhhccCCc
Q 028686 14 VGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-----------RI-----KLQIWDTAGQERFRTITTAYYRGAM 77 (205)
Q Consensus 14 ~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----------~~-----~~~i~D~~g~~~~~~~~~~~~~~~d 77 (205)
++||||+..|.+......-...++.+..-..+.++.. .. .+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999988776555555544444444444310 01 2799999999999888888888899
Q ss_pred EEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC----------------HHHHH----H
Q 028686 78 GILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP----------------TSKGQ----A 134 (205)
Q Consensus 78 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~----------------~~~~~----~ 134 (205)
++++|+|+++ +++++.+. .+.. .++|+++++||+|+... +... .++.. +
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~-~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPG-WNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccc-cccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999987 56665543 2222 35899999999998532 1100 11110 0
Q ss_pred H----HH------------Hh--CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 135 L----AD------------EY--GIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 135 ~----~~------------~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
+ .. .+ .++++++||++|+|+++++.++......
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~ 674 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQK 674 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHH
Confidence 1 11 11 2689999999999999999988765543
No 271
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=2.8e-13 Score=118.57 Aligned_cols=126 Identities=20% Similarity=0.112 Sum_probs=83.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC---------------CCCCC---cccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG---------------SFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (205)
..+|+++|..++|||||+++|+.. .+... +..|+..........+++..+.+.+|||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 358999999999999999999753 11110 112333223233334566678899999999998
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 132 (205)
|.......++.+|++++|+|+...-.......| ..+. ..+.|+++++||+|....+.....+++
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~~~~~~~~~~~ 162 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLINELKLTPQEL 162 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhcccchhcCCHHHH
Confidence 887788889999999999999873221111112 2222 245788999999998654443333333
No 272
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.49 E-value=2.3e-12 Score=103.52 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=84.9
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCC
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADM 120 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl 120 (205)
+.+.+||.+|+...+..|.+++.+++++|||+|+++. ..+.+....++.+.... -.++|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 6689999999999999999999999999999999973 34555555555554432 267999999999996
Q ss_pred CCC--------------CCccCHHHHHHHHHH-----------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 121 DES--------------KRAVPTSKGQALADE-----------YGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 121 ~~~--------------~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
... ......+.+..+... ..+..+.++|.+-.++..+|+.+...+....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 321 111233444333221 1245677889999999999999888887654
No 273
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=8.4e-14 Score=112.97 Aligned_cols=171 Identities=18% Similarity=0.138 Sum_probs=119.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-----hhhh----hhhhccC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRTI----TTAYYRG 75 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~----~~~~~~~ 75 (205)
.++++|.|++|||||++.+..........+.++...+.-.+++ +...++++||||.-+ ...+ ..++..-
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 5789999999999999999998876665554443343333333 346788899999421 1111 1222223
Q ss_pred CcEEEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH---HHHHHHHhCCcEEEEcCCC
Q 028686 76 AMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK---GQALADEYGIKFFETSAKT 150 (205)
Q Consensus 76 ~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~ 150 (205)
-.+++|+.|++.. -|.+.-..+++.|...+ .+.|.|+|+||+|+...+ ++..+. ++.+...-++++++.|..+
T Consensus 248 raaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~e-dL~~~~~~ll~~~~~~~~v~v~~tS~~~ 325 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPE-DLDQKNQELLQTIIDDGNVKVVQTSCVQ 325 (620)
T ss_pred hhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCcc-ccCHHHHHHHHHHHhccCceEEEecccc
Confidence 4477888899874 46777777999998887 578999999999986532 232222 2333444458999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccCCCCCCc
Q 028686 151 NLNVEQVFFSIARDIKQRLADTDSRSEPS 179 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~~~~~~~~~~~~~~~ 179 (205)
.+|+-++.....++++.++-++...++..
T Consensus 326 eegVm~Vrt~ACe~LLa~RVE~Klks~~~ 354 (620)
T KOG1490|consen 326 EEGVMDVRTTACEALLAARVEQKLKSESR 354 (620)
T ss_pred hhceeeHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999988877765555433
No 274
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=4.4e-13 Score=101.76 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=104.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEE-EEEEECCEEEEEEEEeCCChhh-------hhhhhhhhc
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKI-RTIELDGKRIKLQIWDTAGQER-------FRTITTAYY 73 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~ 73 (205)
..++|+++|..|+|||||+|+|+.+...+...-..+.+... ....+++ -.+.+||+||-++ ++.....++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 46899999999999999999999765433221111111111 1112333 3589999999543 777788888
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-------CccCHHH-------H---HHHH
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-------RAVPTSK-------G---QALA 136 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-------~~~~~~~-------~---~~~~ 136 (205)
...|.++++.+..++.=-.+. .+++.+.... .+.++++++|.+|..... ....... + .+++
T Consensus 116 ~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999886422222 2334443332 348999999999964321 1111111 1 1112
Q ss_pred HHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 137 DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 137 ~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
++ --|++.++...+.|++++...+++.+....+
T Consensus 194 q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 194 QE-VKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred hh-cCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 22 1477888889999999999999988864433
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.48 E-value=3.3e-12 Score=107.62 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=71.9
Q ss_pred EEEEEeCCChhh-----hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc
Q 028686 53 KLQIWDTAGQER-----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV 127 (205)
Q Consensus 53 ~~~i~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~ 127 (205)
.+.++||||-.. ........+..+|+++||+|....-+..+ ....+.+.... ...|+++|+||+|+.+. ...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dr-eed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDR-NSD 307 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCc-ccc
Confidence 467889999643 22234457889999999999987433332 12334444322 23699999999998532 222
Q ss_pred CHHHHHHHHHH----hC---CcEEEEcCCCCCCHHHHHHHHHH
Q 028686 128 PTSKGQALADE----YG---IKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 128 ~~~~~~~~~~~----~~---~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
..+.+..+... .+ ..+|++||+.|.|++++++.|..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34555554321 12 36899999999999999999876
No 276
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.45 E-value=2.4e-12 Score=99.66 Aligned_cols=162 Identities=13% Similarity=0.230 Sum_probs=116.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC--EEEEEEEEeCCChhhhhhhhhhhccC----Cc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM 77 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~----~d 77 (205)
-+|+|+|+.++|||||+.+|-+.+ .+.+.-+..|.+..+.-.. .-.++.+|-..|.--+..+....+.. -.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 368999999999999999998765 4455556566655543322 22467889888877666666555443 23
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHhhcC--------------------------------------------------
Q 028686 78 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS-------------------------------------------------- 106 (205)
Q Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~-------------------------------------------------- 106 (205)
.+|++.|++++ --++.+..|...+..+..
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 67889999998 445556666655533311
Q ss_pred -----------CCCcEEEEEeCCCCCC----------CCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 107 -----------DNVNKVLVGNKADMDE----------SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 107 -----------~~~piiiv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
.++|++||.+|+|... +..+....++++||..+|..+|.+|++...|++-+..+|.+++
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 1789999999999721 1223445567888999999999999999999999999999987
Q ss_pred HHH
Q 028686 166 KQR 168 (205)
Q Consensus 166 ~~~ 168 (205)
...
T Consensus 290 yG~ 292 (473)
T KOG3905|consen 290 YGF 292 (473)
T ss_pred cCc
Confidence 654
No 277
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.45 E-value=4.5e-13 Score=103.02 Aligned_cols=96 Identities=18% Similarity=0.254 Sum_probs=77.5
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 141 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (205)
+++..+.+.+++++|++++|||+++++ ++..+..|+..+.. .++|+++|+||+||.+ ...+..+.+..+ ...++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~-~~~~~~~~~~~~-~~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLD-DEDMEKEQLDIY-RNIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCC-CHHHHHHHHHHH-HHCCC
Confidence 557788888999999999999999887 89999999987654 4699999999999964 233333444444 35788
Q ss_pred cEEEEcCCCCCCHHHHHHHHHH
Q 028686 142 KFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 142 ~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
+++++||++|.|++++|+.+..
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred eEEEEecCCchhHHHHHhhhcC
Confidence 9999999999999999998753
No 278
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.44 E-value=9.9e-13 Score=88.07 Aligned_cols=136 Identities=24% Similarity=0.177 Sum_probs=94.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh----hhhccCCcEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TAYYRGAMGIL 80 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~d~~i 80 (205)
|++++|..|+|||||.+.|-+... -+..|...+|. .+ -.+||||..--...| .....++|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 679999999999999999988652 33333332222 11 245999976322222 33346899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~ 159 (205)
+|-++++++|--- ..+.... ..|+|-|++|.||++ ....+..+.|..+-|. ++|++|+.++.|+++++.
T Consensus 70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeecccCccccCC-----ccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 9999999865211 2222222 256888999999964 2345667778888885 799999999999999999
Q ss_pred HHHH
Q 028686 160 SIAR 163 (205)
Q Consensus 160 ~i~~ 163 (205)
.+..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8764
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.43 E-value=4.8e-12 Score=94.35 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=62.9
Q ss_pred EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE--EEEEeCCCCCCCCCccCHH
Q 028686 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--VLVGNKADMDESKRAVPTS 130 (205)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi--iiv~nK~Dl~~~~~~~~~~ 130 (205)
...++++.|..-.....+. -++.+|.|+|+.+.++... .+.. ++.. ++++||+|+.+. .....+
T Consensus 93 D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~-~~~~~~ 158 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPM-VGADLG 158 (199)
T ss_pred CEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhcccc-ccccHH
Confidence 4556777774322222221 1677999999988665321 1112 2333 899999999642 122233
Q ss_pred HHHHHHHH--hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 131 KGQALADE--YGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 131 ~~~~~~~~--~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
...+..+. .+.+++++||++|.|++++|+++.+.++
T Consensus 159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34444443 3489999999999999999999987653
No 280
>PRK13768 GTPase; Provisional
Probab=99.43 E-value=1.2e-12 Score=101.09 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=70.2
Q ss_pred EEEEEeCCChhhh---hhhhhhhccC-----CcEEEEEEeCCChhHHHHHHH--HHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 53 KLQIWDTAGQERF---RTITTAYYRG-----AMGILLVYDVTDESSFNNIRN--WIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 53 ~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.+.+||+||+.+. +..+..+++. ++++++|+|........+... |+....... .+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEEEEhHhhcC
Confidence 5899999998653 3444333332 889999999965433322221 222222122 4699999999999865
Q ss_pred CCCccCHHHHHH----------------------------HHHHhC--CcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 123 SKRAVPTSKGQA----------------------------LADEYG--IKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 123 ~~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.... ++..+ .....+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~---~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEEL---ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhH---HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 3211 11111 122334 58899999999999999999987663
No 281
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.42 E-value=5.9e-12 Score=104.33 Aligned_cols=161 Identities=15% Similarity=0.270 Sum_probs=113.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC--CEEEEEEEEeCCChhhhhhhhhhhccC----CcE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRG----AMG 78 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~----~d~ 78 (205)
.|+|+|..++|||||+.+|.+.+ .+.++.+.+|.+..+.-+ .....+.+|-+.|...+..+....+.. --+
T Consensus 27 ~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~ 103 (472)
T PF05783_consen 27 SVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL 103 (472)
T ss_pred eEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence 68999999999999999987643 345667777765544322 123468999998876677776655542 347
Q ss_pred EEEEEeCCChhH-HHHHHHHHHHHHhhc----------------------------------------------------
Q 028686 79 ILLVYDVTDESS-FNNIRNWIRNIEQHA---------------------------------------------------- 105 (205)
Q Consensus 79 ~i~v~d~~~~~s-~~~~~~~~~~i~~~~---------------------------------------------------- 105 (205)
+++|.|.+.|-. ++.+..|+..+..+.
T Consensus 104 vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~ 183 (472)
T PF05783_consen 104 VVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVL 183 (472)
T ss_pred EEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccccc
Confidence 889999998754 344554544432110
Q ss_pred ----------CCCCcEEEEEeCCCCCC----C------CCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 106 ----------SDNVNKVLVGNKADMDE----S------KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 106 ----------~~~~piiiv~nK~Dl~~----~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
+.++|++||.+|+|... . ..++..+.++.++..+|+.+|.+|++...+++-++.+|.+.+
T Consensus 184 lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 184 LPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 01589999999999532 1 112344557888889999999999999999999999988887
Q ss_pred HHH
Q 028686 166 KQR 168 (205)
Q Consensus 166 ~~~ 168 (205)
...
T Consensus 264 ~~~ 266 (472)
T PF05783_consen 264 YGF 266 (472)
T ss_pred ccC
Confidence 654
No 282
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.40 E-value=5.5e-12 Score=98.69 Aligned_cols=149 Identities=23% Similarity=0.147 Sum_probs=101.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCC---------------------------------CCCcccceeeEEEEEEEEEC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSF---------------------------------TTSFITTIGIDFKIRTIELD 48 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~~ 48 (205)
..+|++-+|.-.=||||||-||+.... ..+....+.+|..+..+..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 458999999999999999999976421 11233444455555555444
Q ss_pred CEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC
Q 028686 49 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 128 (205)
Q Consensus 49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~ 128 (205)
. -+|.+-||||+++|..+.-.-...||++|+++|+.. ...+-..-...|....+ -..+++..||+||.+.+.+..
T Consensus 85 K--RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 85 K--RKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred c--ceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 4 458999999999999877777778999999999843 22222222223333321 246677799999987544332
Q ss_pred ---HHHHHHHHHHhC---CcEEEEcCCCCCCHH
Q 028686 129 ---TSKGQALADEYG---IKFFETSAKTNLNVE 155 (205)
Q Consensus 129 ---~~~~~~~~~~~~---~~~~~~Sa~~~~gi~ 155 (205)
..+-..|+.+++ ..++++||..|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 223345677777 569999999999976
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.40 E-value=1.5e-11 Score=96.32 Aligned_cols=118 Identities=20% Similarity=0.179 Sum_probs=69.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-------hhhhc
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYY 73 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~ 73 (205)
..++|+++|.+|+||||++|+|++..... ....+.+..........++ ..+.+|||||..+.... ...++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 35799999999999999999999876421 1112222222222233444 57899999996542211 11112
Q ss_pred --cCCcEEEEEEeCCChhHHH-HHHHHHHHHHhhcCC--CCcEEEEEeCCCCCC
Q 028686 74 --RGAMGILLVYDVTDESSFN-NIRNWIRNIEQHASD--NVNKVLVGNKADMDE 122 (205)
Q Consensus 74 --~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~--~~piiiv~nK~Dl~~ 122 (205)
...|+++||..++... +. .-...++.+...++. -.++||++++.|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2589999996654321 11 112334444444321 247899999999753
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.39 E-value=2.6e-11 Score=93.31 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=69.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--h-h-------hhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--T-I-------TTA 71 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~-------~~~ 71 (205)
.++|+|+|.+|+|||||+|+|++...... ..+..+..........++ ..+.+|||||..... . . ...
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 58999999999999999999999764221 111112222222334445 568999999965331 0 0 122
Q ss_pred hcc--CCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686 72 YYR--GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE 122 (205)
Q Consensus 72 ~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~ 122 (205)
++. ..+++++|..++.. ....+ ...++.+....+.+ .++++|.||+|...
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 332 57788888766542 12221 23344444333222 47899999999754
No 285
>PTZ00258 GTP-binding protein; Provisional
Probab=99.37 E-value=1.7e-11 Score=99.35 Aligned_cols=84 Identities=19% Similarity=0.113 Sum_probs=55.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhhh--
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF-- 65 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~-- 65 (205)
.++|+++|.||||||||+|+|.+........|..+.+.....+.+... ...+.++|+||...-
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 478999999999999999999887754443344433333333333221 235899999995421
Q ss_pred --hhhh---hhhccCCcEEEEEEeCC
Q 028686 66 --RTIT---TAYYRGAMGILLVYDVT 86 (205)
Q Consensus 66 --~~~~---~~~~~~~d~~i~v~d~~ 86 (205)
..+. -..++.+|++++|+|..
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1222 23467899999999973
No 286
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.37 E-value=2.5e-11 Score=100.41 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=117.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+...++|+.++|||.+++.|+++.+...+..+....+....+.+.+....+.+-|.+-. ...-+.+.- ..+|+++++|
T Consensus 426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~Y 503 (625)
T KOG1707|consen 426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVY 503 (625)
T ss_pred eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEec
Confidence 67899999999999999999999988777676666666666666676666777777744 222222222 5699999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
|.+++.+|+.....++.-... .++|+++|+.|.|+.+...+...+. .+++.++++ +.+.+|.+..-. .++|..|.
T Consensus 504 DsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~ 579 (625)
T KOG1707|consen 504 DSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLA 579 (625)
T ss_pred ccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHH
Confidence 999999999887655554433 5699999999999976544444444 888999986 345667765334 89999998
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
.++..
T Consensus 580 ~~A~~ 584 (625)
T KOG1707|consen 580 TMAQY 584 (625)
T ss_pred HhhhC
Confidence 88754
No 287
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.36 E-value=6.2e-12 Score=95.37 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=68.3
Q ss_pred EEEEEEeCCChhh-hh-----hhhhhhcc--CCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 52 IKLQIWDTAGQER-FR-----TITTAYYR--GAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 52 ~~~~i~D~~g~~~-~~-----~~~~~~~~--~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
+.+.++||||+-. |. .+....+. ...++++|+|... +.+|-.-..+. +......++|+|++.||.|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA--cSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA--CSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH--HHHHHhccCCeEEEEecccc
Confidence 5688999999743 21 11111111 2446777887654 33332211111 22223356999999999998
Q ss_pred CCCCCcc----CHHHHHHHHH---------------------HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 121 DESKRAV----PTSKGQALAD---------------------EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 121 ~~~~~~~----~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
.+..... +.+..++..+ ..++..+-+||.+|.|++++|..+.+.+.+...+
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 6532110 0111111111 0146788999999999999999998888766443
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=1.1e-11 Score=108.82 Aligned_cols=118 Identities=21% Similarity=0.167 Sum_probs=76.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCCC--------------cccceeeEEEEE--EEEECCEEEEEEEEeCCChhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS--FTTS--------------FITTIGIDFKIR--TIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~--~~~~--------------~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
.+|+++|..++|||||+.+|+... .... ....+.+..... ...+++....+.++||||+.+|
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 479999999999999999997632 1110 000011111111 1223445678899999999988
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
.......++.+|++++|+|+...-... ....+..+.. .+.|+++++||+|....+.
T Consensus 101 ~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~~~~~ 156 (731)
T PRK07560 101 GGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRLIKEL 156 (731)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhhcccc
Confidence 877888889999999999988742222 2222222222 3478899999999864433
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.35 E-value=4e-11 Score=96.21 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=54.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhh---
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER--- 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 64 (205)
.++|+++|.||||||||+|+|.+........|.++.+...-.+.+... ...+.+.|+||...
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 378999999999999999999998743333333332222222232221 13589999999542
Q ss_pred -hhhhhhh---hccCCcEEEEEEeCC
Q 028686 65 -FRTITTA---YYRGAMGILLVYDVT 86 (205)
Q Consensus 65 -~~~~~~~---~~~~~d~~i~v~d~~ 86 (205)
-..+... .++.+|++++|+|..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122222 357899999999973
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.35 E-value=1.1e-12 Score=100.18 Aligned_cols=112 Identities=18% Similarity=0.264 Sum_probs=59.4
Q ss_pred EEEEEeCCChhhhhhhhhhhc--------cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686 53 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121 (205)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~ 121 (205)
.+.++|||||.++-..+.... ...-++++++|... +..|-. .++-.+......+.|.+.|+||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 689999999987554443332 34557888888764 333432 22333322222469999999999996
Q ss_pred CCCCcc------------------CHHHHHHHHH---HhC-C-cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 122 ESKRAV------------------PTSKGQALAD---EYG-I-KFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 122 ~~~~~~------------------~~~~~~~~~~---~~~-~-~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
...... ......+++. .++ + .++.+|+.+++|+++++..+.+++.
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 521000 0001111222 223 4 7999999999999999999887653
No 291
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.34 E-value=2.1e-11 Score=98.53 Aligned_cols=160 Identities=17% Similarity=0.187 Sum_probs=109.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC--CCC--------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS--FTT--------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
..-+|+++-.-..|||||+..|+... |.+ +... |++...+.-.+..+.+.+.|.||||+.+|
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkER--GITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKER--GITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhc--CcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 34689999999999999999998753 211 1112 22333333333334478999999999999
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-------
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE------- 138 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~------- 138 (205)
-...++.++-.|++++++|+.+.. +.+.+-.+ .+....+.+.|+|+||+|-+++.......+...+...
T Consensus 82 GGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASEGP-MPQTRFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred cchhhhhhhhcceEEEEEEcccCC-CCchhhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence 999999999999999999998731 12222111 2233357888999999998776555555555555443
Q ss_pred hCCcEEEEcCCCCC----------CHHHHHHHHHHHHHH
Q 028686 139 YGIKFFETSAKTNL----------NVEQVFFSIARDIKQ 167 (205)
Q Consensus 139 ~~~~~~~~Sa~~~~----------gi~~~~~~i~~~~~~ 167 (205)
++.|++..|+++|. ++.-+|+.|++.+..
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 34788889988763 356677776666543
No 292
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.33 E-value=1e-10 Score=88.20 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=92.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcc--cceeeEEEEEEEEECCEEEEEEEEeCCChhhh--------hhhh---h
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFI--TTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------RTIT---T 70 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~---~ 70 (205)
++|+|+|..|+||||++|.+++........ .............+++ ..+.++||||..+. ..+. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999987533221 1122223344446777 45789999994321 1111 1
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCCCc---c---CHHHHHHHHHHhCCc
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDESKRA---V---PTSKGQALADEYGIK 142 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~~~~~---~---~~~~~~~~~~~~~~~ 142 (205)
......+++++|+.+... +-.+ ...++.+....+++ ..++||.+..|......- + .....+.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 123468999999998832 2111 12223333333211 367888888875442220 0 012345566677778
Q ss_pred EEEEcCC------CCCCHHHHHHHHHHHHHHHh
Q 028686 143 FFETSAK------TNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 143 ~~~~Sa~------~~~gi~~~~~~i~~~~~~~~ 169 (205)
|+.++.. ....+.+|++.+-+.+.++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8877776 23457788888877777664
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.32 E-value=2.7e-11 Score=107.81 Aligned_cols=116 Identities=21% Similarity=0.145 Sum_probs=77.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CC--------------CcccceeeEEEEEEEEE--------------CCEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF--TT--------------SFITTIGIDFKIRTIEL--------------DGKRI 52 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~--------------~~~~~ 52 (205)
..+|+|+|..++|||||+++|+...- .. +......+......+.+ ....+
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 46899999999999999999976431 00 00111111111111222 12357
Q ss_pred EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.+.++||||+.+|.......++.+|++|+|+|+...-.......| ..+. ..++|+++++||+|...
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRCF 164 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCcccc
Confidence 789999999999988888888999999999999875332222222 2222 25689999999999863
No 294
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.30 E-value=2.3e-10 Score=90.79 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=91.4
Q ss_pred ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHH-------HHHHH---HHHHHH
Q 028686 33 ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF-------NNIRN---WIRNIE 102 (205)
Q Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~---~~~~i~ 102 (205)
.+|.| .....+.+++ ..+.+.|.+||..-+.-|.+.+.+++++|||+++++.+.. ..+.. +++.|-
T Consensus 180 ~~T~G--I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~ 255 (354)
T KOG0082|consen 180 VPTTG--IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESIC 255 (354)
T ss_pred cCcCC--eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHh
Confidence 34444 3333444444 7789999999998888899999999999999999874322 22322 444443
Q ss_pred hhc-CCCCcEEEEEeCCCCCCC--------------CCccCHHHHHHHHHHh----------CCcEEEEcCCCCCCHHHH
Q 028686 103 QHA-SDNVNKVLVGNKADMDES--------------KRAVPTSKGQALADEY----------GIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 103 ~~~-~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~gi~~~ 157 (205)
.+. -.+.++|+++||.||-.+ ...-..+++..+.... .+.++.+.|.+-.+|+.+
T Consensus 256 n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~v 335 (354)
T KOG0082|consen 256 NNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFV 335 (354)
T ss_pred cCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHH
Confidence 332 267999999999997321 1223445554443211 255667789999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028686 158 FFSIARDIKQRLAD 171 (205)
Q Consensus 158 ~~~i~~~~~~~~~~ 171 (205)
|..+.+.+...+-.
T Consensus 336 f~av~d~Ii~~nlk 349 (354)
T KOG0082|consen 336 FDAVTDTIIQNNLK 349 (354)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876644
No 295
>PTZ00416 elongation factor 2; Provisional
Probab=99.30 E-value=4.1e-11 Score=106.48 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=76.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCC--------------CcccceeeEEEEEEEEEC--------CEEEEEEEEe
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWD 58 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~~t~~~~~~~~~~~~~--------~~~~~~~i~D 58 (205)
..+|+++|..++|||||+++|+... ... +....+.+......+.+. ++...+.++|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 3589999999999999999998632 110 011111111111222222 2256789999
Q ss_pred CCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686 59 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121 (205)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~ 121 (205)
|||+.+|.......++.+|++|+|+|+.+.-... ....+..+.. .++|+++++||+|+.
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH---cCCCEEEEEEChhhh
Confidence 9999998877888889999999999998742222 1222333332 458999999999986
No 296
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=7.7e-12 Score=92.56 Aligned_cols=147 Identities=18% Similarity=0.262 Sum_probs=95.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-----hhhhhhhccCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYYRGA 76 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 76 (205)
.-||+++|.+|+|||++--.+..+-.. ....++..+|+....+.+-| +..+.+||++|++.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 458999999999999986555533211 22334444566666665544 466899999999843 23456778999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHH---HHHhhcCCCCcEEEEEeCCCCCCCCCc-cC----HHHHHHHHHHhCCcEEEEcC
Q 028686 77 MGILLVYDVTDESSFNNIRNWIR---NIEQHASDNVNKVLVGNKADMDESKRA-VP----TSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~----~~~~~~~~~~~~~~~~~~Sa 148 (205)
+++|+|||+...+-..++..+.. .+.++. +...+.+...|.||...+.. .. .+....+....++.++.+|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998765555555444 333333 67888999999999753221 11 12223333344567777776
Q ss_pred CCC
Q 028686 149 KTN 151 (205)
Q Consensus 149 ~~~ 151 (205)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 654
No 297
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.6e-11 Score=100.64 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=106.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC------------CE----EEEEEEEeCCChhhhhhhh
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFRTIT 69 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------------~~----~~~~~i~D~~g~~~~~~~~ 69 (205)
+||+|...+|||-|+..+.+..+......++........+... ++ .=-+.++||||++.|..+.
T Consensus 478 cCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlR 557 (1064)
T KOG1144|consen 478 CCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLR 557 (1064)
T ss_pred EEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhh
Confidence 7999999999999999998876554433333322222222211 10 0127889999999999999
Q ss_pred hhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----CCcc-----------CHH
Q 028686 70 TAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----KRAV-----------PTS 130 (205)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----~~~~-----------~~~ 130 (205)
.+....||.+|+|+|+.. +++++.+ +.++ ..+.|+||.+||+|-... ...+ ..+
T Consensus 558 srgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 558 SRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 999999999999999865 4444443 3333 356999999999995321 0000 000
Q ss_pred H-------HHHHHHH-h-----------C--CcEEEEcCCCCCCHHHHHHHHHHHHHHHhccc
Q 028686 131 K-------GQALADE-Y-----------G--IKFFETSAKTNLNVEQVFFSIARDIKQRLADT 172 (205)
Q Consensus 131 ~-------~~~~~~~-~-----------~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~ 172 (205)
. +.+|+.+ + + +.++++||.+|+||-+|+.+|++.......+.
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0 1111110 0 1 55789999999999999999999888776654
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.28 E-value=3.5e-11 Score=90.42 Aligned_cols=55 Identities=22% Similarity=0.185 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 109 VNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 109 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
.|.++++||+|+.+.. ....++.....++.+ .+++++||+++.|++++|+++.+.
T Consensus 149 ~a~iiv~NK~Dl~~~~-~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAV-GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccc-hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5779999999996421 122333444444433 889999999999999999999875
No 299
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.27 E-value=7.1e-11 Score=89.82 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=80.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
...|+++|.+|+|||||++.|....-........|. + .+. ......+.++||||.. ..+ ....+.+|++++|
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~-~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVV-TGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEE-ecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 356899999999999999999875321111111121 1 111 1134567899999864 222 2345789999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCcc--CHHHHHH-HHHHh--CCcEEEEcCCCCC
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRAV--PTSKGQA-LADEY--GIKFFETSAKTNL 152 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~ 152 (205)
+|.+....... ..++..+.. .+.|.+ +|+||.|+.+..... ..+++++ +..+. +.+++.+||+++-
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99976433222 223333332 346754 599999986422111 1122222 22222 3689999999873
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.27 E-value=9.2e-11 Score=93.41 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=66.6
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCH
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPT 129 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~ 129 (205)
.+.+.++||+|..+.... ....+|.+++|.+....+.+..+. ..+.. ..-++|+||+|+.+... ....
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHHHH
Confidence 356899999997633322 456799999996644444333222 21222 22389999999864221 1112
Q ss_pred HHHHHHHHH-------hCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686 130 SKGQALADE-------YGIKFFETSAKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 130 ~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 168 (205)
.+....... ...+++.+||+++.|++++++.+.+.+...
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 223322221 125799999999999999999999876633
No 301
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.22 E-value=2e-10 Score=83.38 Aligned_cols=79 Identities=20% Similarity=0.089 Sum_probs=50.9
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh--CCcEEEEcCCCCCCHH
Q 028686 78 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVE 155 (205)
Q Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~ 155 (205)
.-|+|+|++..+-... .-.+.+.+ .=++|+||.||.+. ...+.+...+-+++. +.+++++|+++|+|++
T Consensus 120 ~~v~VidvteGe~~P~--K~gP~i~~------aDllVInK~DLa~~-v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~ 190 (202)
T COG0378 120 LRVVVIDVTEGEDIPR--KGGPGIFK------ADLLVINKTDLAPY-VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD 190 (202)
T ss_pred eEEEEEECCCCCCCcc--cCCCceeE------eeEEEEehHHhHHH-hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence 6788888887542110 00111111 22789999999763 334444444444433 3899999999999999
Q ss_pred HHHHHHHHHH
Q 028686 156 QVFFSIARDI 165 (205)
Q Consensus 156 ~~~~~i~~~~ 165 (205)
++++|+....
T Consensus 191 ~~~~~i~~~~ 200 (202)
T COG0378 191 EWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhhc
Confidence 9999987653
No 302
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.21 E-value=2.1e-10 Score=89.16 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=52.7
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhh----hh
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER----FR 66 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~----~~ 66 (205)
|+++|.|+||||||+|+|.+........|..+.+.....+.+.+. ...+.++|+||... ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998764433343333333333333322 12589999999542 12
Q ss_pred hhhhh---hccCCcEEEEEEeC
Q 028686 67 TITTA---YYRGAMGILLVYDV 85 (205)
Q Consensus 67 ~~~~~---~~~~~d~~i~v~d~ 85 (205)
.+... .++.+|++++|+|.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 22223 35679999999986
No 303
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.7e-10 Score=94.33 Aligned_cols=150 Identities=18% Similarity=0.126 Sum_probs=97.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC-------------------------------CCCCCcccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 51 (205)
.+.++++|...+|||||+.+|+.. +..++......++.....+.. ..
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes--~~ 254 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES--KS 254 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec--Cc
Confidence 367899999999999999988653 112234455555555555543 44
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHH--HHHHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWI--RNIEQHASDNVNKVLVGNKADMDESKRA 126 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~--~~i~~~~~~~~piiiv~nK~Dl~~~~~~ 126 (205)
..+.+.|.||+..|......-...||++++|+|++.. ..|+.-.+.. ..+.+..+ -..++|++||+|+.+-+.+
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHH
Confidence 6689999999999988887778899999999999863 2333222222 22223322 2467788999998652111
Q ss_pred ---cCHHHHHHHH-HHhC-----CcEEEEcCCCCCCHH
Q 028686 127 ---VPTSKGQALA-DEYG-----IKFFETSAKTNLNVE 155 (205)
Q Consensus 127 ---~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~ 155 (205)
.....+..|. +..| +.++++|..+|+|+-
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 1112223333 3333 679999999999865
No 304
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.18 E-value=1.8e-10 Score=92.58 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=81.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhh----
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA---- 71 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---- 71 (205)
+++|+|+|.+|+|||||||.|.+-.-... ...|.....|. .-... .+.+||.||..........
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~p----nv~lWDlPG~gt~~f~~~~Yl~~ 109 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFP----NVTLWDLPGIGTPNFPPEEYLKE 109 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-T----TEEEEEE--GGGSS--HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCC----CCeEEeCCCCCCCCCCHHHHHHH
Confidence 58999999999999999999976432111 11222222222 11222 3899999996532222222
Q ss_pred -hccCCcEEEEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCC--CCC----CCccCH----HHHHHHHH--
Q 028686 72 -YYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--DES----KRAVPT----SKGQALAD-- 137 (205)
Q Consensus 72 -~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl--~~~----~~~~~~----~~~~~~~~-- 137 (205)
-+..-|.+|++.+-. |..... +...+.+ .+.|+++|-+|.|. .++ .....+ +++++.+.
T Consensus 110 ~~~~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 110 VKFYRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp TTGGG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred ccccccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence 245688877776533 332222 3344444 35899999999995 111 112222 22333322
Q ss_pred --HhC---CcEEEEcCCCC--CCHHHHHHHHHHHHHHHhccc
Q 028686 138 --EYG---IKFFETSAKTN--LNVEQVFFSIARDIKQRLADT 172 (205)
Q Consensus 138 --~~~---~~~~~~Sa~~~--~gi~~~~~~i~~~~~~~~~~~ 172 (205)
+.| -++|.+|+.+- .++..+.+.+.+.+..+.+..
T Consensus 183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~ 224 (376)
T PF05049_consen 183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHA 224 (376)
T ss_dssp HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHH
T ss_pred HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHH
Confidence 223 36889998765 568888888888776665543
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.18 E-value=1.5e-09 Score=85.04 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=75.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCC----------cccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER------- 64 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 64 (205)
..++|+|+|.+|+|||||+|.|++...... ..++.........+.-++..+.+.++||||..+
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 368999999999999999999998764322 123333444444555578889999999999321
Q ss_pred -----------hhhhh---------hhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686 65 -----------FRTIT---------TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123 (205)
Q Consensus 65 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~ 123 (205)
|.... ...=...|+++|.++.+... +-.++ +.+++.. ..+++|-|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls-~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLS-KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHT-TTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhc-ccccEEeEEecccccCH
Confidence 11000 00012578999999987531 11222 2333333 34889999999997431
Q ss_pred -CCccCHHHHHHHHHHhCCcEEEEc
Q 028686 124 -KRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 124 -~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
+.....+.+..-....++.+|...
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHHcCceeeccc
Confidence 111112223333445667666543
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.17 E-value=1.3e-09 Score=87.99 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=92.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC----CCCC----------Ccc-------cceeeEE---EEEEEE-ECCEEEEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG----SFTT----------SFI-------TTIGIDF---KIRTIE-LDGKRIKLQIW 57 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~----~~~~----------~~~-------~t~~~~~---~~~~~~-~~~~~~~~~i~ 57 (205)
.+-|.|+|+-++|||||+|+|.+. .... -.. .|+.+-+ ....+. .++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 367899999999999999999987 3220 011 2222223 122222 24556789999
Q ss_pred eCCChhh--------hhh------h---------------hhhhcc-CCcEEEEEE-eCC----ChhHHHHH-HHHHHHH
Q 028686 58 DTAGQER--------FRT------I---------------TTAYYR-GAMGILLVY-DVT----DESSFNNI-RNWIRNI 101 (205)
Q Consensus 58 D~~g~~~--------~~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~~i 101 (205)
||+|-.. -.. - ....+. .+++.++|. |.+ .++.+... ..|.+.+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9998321 001 0 123344 789888888 664 12333333 2356666
Q ss_pred HhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC--CCCCHHHHHHHHH
Q 028686 102 EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK--TNLNVEQVFFSIA 162 (205)
Q Consensus 102 ~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i~ 162 (205)
+. .++|+++++|+.|-.. ....+...++...++++++.+|+. +..+|..+++.++
T Consensus 177 k~---~~kPfiivlN~~dp~~---~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 177 KE---LNKPFIILLNSTHPYH---PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred Hh---cCCCEEEEEECcCCCC---chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 55 4699999999999311 124444556667788887777763 3445555554443
No 307
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=8.4e-10 Score=86.46 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=93.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC----CCC---CcccceeeEEEEEEEEE-------CCEEEEEEEEeCCChhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS----FTT---SFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTI 68 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~----~~~---~~~~t~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~~~ 68 (205)
.+++.++|.-.||||||.++|..-. |+. .....+..|.....+.+ .+....+.++|+||+...-..
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 4899999999999999999996532 221 22222333333333322 244578899999998754332
Q ss_pred hhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-CCccCH-HHHHHHHHHh----
Q 028686 69 TTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPT-SKGQALADEY---- 139 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~~~~~~-~~~~~~~~~~---- 139 (205)
...-..-.|..++|+|+.- .++-+.+. |-+.. -...+||+||.|+..+ .+.... +...++.+.+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLi-----ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLI-----IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhh-----hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 2222233677889999875 33333321 11111 1346788899886543 222222 2233333332
Q ss_pred ---CCcEEEEcCCCC----CCHHHHHHHHHHHHHHH
Q 028686 140 ---GIKFFETSAKTN----LNVEQVFFSIARDIKQR 168 (205)
Q Consensus 140 ---~~~~~~~Sa~~~----~gi~~~~~~i~~~~~~~ 168 (205)
+.|++++||..| +++.++.+.+-.++.+-
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 279999999999 56666666666655443
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.7e-10 Score=89.42 Aligned_cols=185 Identities=16% Similarity=0.122 Sum_probs=111.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeE--E----------------EEEEEEE--C----CEEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGID--F----------------KIRTIEL--D----GKRIKLQ 55 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~--~----------------~~~~~~~--~----~~~~~~~ 55 (205)
.++|.++|.-.-|||||+.+|.+--. .++....+.+- | +...-.. . .-.-.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 37999999999999999999977421 11111111110 0 0000000 0 1123588
Q ss_pred EEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHH
Q 028686 56 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQA 134 (205)
Q Consensus 56 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~ 134 (205)
|.|.||++-.-...-.-..-.|++++|++++.+..=.+....+..+...- -..++|+=||.||...+ ....++++++
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk~ 167 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIKE 167 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHHH
Confidence 99999999644322222334899999999987433233333334443331 25688889999997522 2234566666
Q ss_pred HHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCC---CCccccccCCCCC
Q 028686 135 LADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS---EPSTIKINQPDQA 189 (205)
Q Consensus 135 ~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 189 (205)
|.+.- +.|++.+||..+.||+-+++.|.+.+..-.++..... -.++...++|+.+
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~ 228 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTP 228 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCC
Confidence 66532 5899999999999999999999888866555444322 1234444555443
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.6e-10 Score=96.53 Aligned_cols=129 Identities=17% Similarity=0.098 Sum_probs=87.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC--CCC----------------CcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS--FTT----------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
..-+|.++|+-.+|||||..+|+... .+. +....+.+......+.+.+ ++.+.++|||||.
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHV 87 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHV 87 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCcc
Confidence 35689999999999999999997542 111 0112222222223333333 5889999999999
Q ss_pred hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH
Q 028686 64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL 135 (205)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~ 135 (205)
+|.....+.++-+|++++|+|+...-....-..|.+.. ..++|.++++||+|....+.....+++...
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~ 155 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGADFYLVVEQLKER 155 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccChhhhHHHHHHH
Confidence 99999999999999999999998743222222233332 246999999999997766555555555443
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.14 E-value=3.6e-10 Score=89.57 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=63.9
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC-H
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-T 129 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~-~ 129 (205)
.+.+.|+||+|..... ...+..+|.++++-.. ++-+++......+ .+.|.++++||+|+.+...... .
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 3668899999865322 2245667887777433 3334443333333 2467899999999865321000 0
Q ss_pred HH----HHHHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 130 SK----GQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 130 ~~----~~~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.+ ...+... ...+++.+||+++.|++++++++.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 0111111 2246899999999999999999988754
No 311
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.12 E-value=3.6e-10 Score=93.03 Aligned_cols=162 Identities=23% Similarity=0.365 Sum_probs=121.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+|+.|+|..++|||+|+++++.+.+.....|--+ .+.+++-++++...+.+.|-+|... ..|...+|+.||||
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 7899999999999999999999988666555433 4556777788888889999988432 44666799999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCccCHHHHHHH-HHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
.+.+.++|..+..+...+..+.. ..+|+++++.+.-... ..+.+......++ ++...+.||+..+.+|.+++.+|+.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 99999999998877777765443 5688888887643211 1222333344443 4555589999999999999999999
Q ss_pred HHHHHHHHhccc
Q 028686 161 IARDIKQRLADT 172 (205)
Q Consensus 161 i~~~~~~~~~~~ 172 (205)
+...+...+..+
T Consensus 184 ~~~k~i~~~~~q 195 (749)
T KOG0705|consen 184 VAQKIVQLRKYQ 195 (749)
T ss_pred HHHHHHHHHhhh
Confidence 988887765444
No 312
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.11 E-value=9.8e-10 Score=81.43 Aligned_cols=94 Identities=20% Similarity=0.207 Sum_probs=66.9
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHh
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEY 139 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~ 139 (205)
+..++..+++++|++++|+|+.++.. .|...+.... .+.|+++|+||+|+.+. ....+....+. ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhc
Confidence 57788899999999999999987542 1223332222 46899999999998642 22334444443 223
Q ss_pred CC---cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 140 GI---KFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 140 ~~---~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+. .++++||+++.|++++++++.+.+.
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 32 6899999999999999999988764
No 313
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.10 E-value=2e-10 Score=89.17 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=96.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh---------hhhhhhhhhccCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAYYRGA 76 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~~~ 76 (205)
|.++|..|+|||||+++|..........-..+.|............ .+.+.||-|.- .|+..... +..+
T Consensus 181 iavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee-Vaea 258 (410)
T KOG0410|consen 181 IAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE-VAEA 258 (410)
T ss_pred EEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH-Hhhc
Confidence 7899999999999999999765433322222223333333333222 46778999853 23333332 3469
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc----EEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN----KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
|.++.|.|++.|+.-++....+.-+...--+..| ++=|-||.|....... ..+++ .+.+|+++|.
T Consensus 259 dlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~v~isaltgd 327 (410)
T KOG0410|consen 259 DLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--DVGISALTGD 327 (410)
T ss_pred ceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccCC--ccccccccCc
Confidence 9999999999988776666555555544222222 3455688886432111 12222 5679999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDIKQR 168 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~ 168 (205)
|++++.+.+-..+...
T Consensus 328 gl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 328 GLEELLKAEETKVASE 343 (410)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 9999999988877654
No 314
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.9e-09 Score=86.96 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=105.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
-|+..|.---|||||+..+.+... .+.-...+..|......+... ..+.|+|.||++++-...-.-+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 467889999999999999988753 233334444455444444433 478999999999988777777788999999
Q ss_pred EEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh---CCcEEEEcCCCCCCHH
Q 028686 82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~ 155 (205)
|++.++ .++-+.+ ..+ ... .....++|++|+|..++. -..+.++.+.... +.+++.+|+.+|+||+
T Consensus 80 vV~~deGl~~qtgEhL----~iL-dll-gi~~giivltk~D~~d~~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 80 VVAADEGLMAQTGEHL----LIL-DLL-GIKNGIIVLTKADRVDEA--RIEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred EEeCccCcchhhHHHH----HHH-Hhc-CCCceEEEEeccccccHH--HHHHHHHHHHhhcccccccccccccccCCCHH
Confidence 999965 4555543 222 222 123458999999986532 1222333333322 3678999999999999
Q ss_pred HHHHHHHHHHH
Q 028686 156 QVFFSIARDIK 166 (205)
Q Consensus 156 ~~~~~i~~~~~ 166 (205)
++.+.|.....
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999999886
No 315
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.09 E-value=6.7e-10 Score=80.52 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=43.2
Q ss_pred EEEEEeCCChhh----hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686 53 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 118 (205)
Q Consensus 53 ~~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~ 118 (205)
.+.|+|+||... ...+...++..+|++|+|.+.+..-+-.....+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 378999999642 3466788889999999999999854444444444444433 24488888984
No 316
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.08 E-value=3.8e-09 Score=89.82 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=71.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCc--ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hh---h
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TI---T 69 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~ 69 (205)
.++|+|+|.+|+||||++|.|++... .... ..|.. ........++ ..+.++||||..... .+ .
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 47899999999999999999999763 2222 22222 2222223444 568999999965321 11 1
Q ss_pred hhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686 70 TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE 122 (205)
Q Consensus 70 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~ 122 (205)
..++. ..|++++|..++.......-..+++.|...++.+ ..+|||.++.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 22333 4789999988764332222224556665555433 47789999999764
No 317
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.04 E-value=9.6e-10 Score=85.61 Aligned_cols=55 Identities=20% Similarity=0.140 Sum_probs=39.2
Q ss_pred CcEEEEEeCCCCCCCCCccCHHHHHHHHHHh--CCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 109 VNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 109 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
..-++|+||+|+.+. .....+...+..+.. .++++.+|+++|+|++++.+||.++
T Consensus 231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 455999999999642 112233333333333 4789999999999999999999774
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.04 E-value=4.4e-09 Score=80.29 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=42.2
Q ss_pred EEEEEEeCCChhh-------------hhhhhhhhccC-CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686 52 IKLQIWDTAGQER-------------FRTITTAYYRG-AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 117 (205)
Q Consensus 52 ~~~~i~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK 117 (205)
..+.++|+||-.. ...+...|+++ .+++++|+|+...-.-.....+.+.+. ..+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 3588999999642 22345667774 568888998764211112222223332 246899999999
Q ss_pred CCCCC
Q 028686 118 ADMDE 122 (205)
Q Consensus 118 ~Dl~~ 122 (205)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 319
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.8e-09 Score=82.25 Aligned_cols=84 Identities=15% Similarity=0.080 Sum_probs=55.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceee--EEEEEEEEE----------C----CEEEEEEEEeCCChh---
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGI--DFKIRTIEL----------D----GKRIKLQIWDTAGQE--- 63 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~----------~----~~~~~~~i~D~~g~~--- 63 (205)
-+++.++|.||+|||||.|.+..........|..++ ......+.. . -....+.++|.+|-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999988754333343332 222222211 1 124568899999843
Q ss_pred -hhhhhhhhh---ccCCcEEEEEEeCC
Q 028686 64 -RFRTITTAY---YRGAMGILLVYDVT 86 (205)
Q Consensus 64 -~~~~~~~~~---~~~~d~~i~v~d~~ 86 (205)
+-+.+-..| ++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 334444444 56899999999964
No 320
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.00 E-value=3.5e-09 Score=75.93 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=65.1
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEE
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFF 144 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (205)
++.+..++++++|++++|+|+.++....+. .+...+. ..+.|+++|+||+|+.+. .. .+....+....+.+++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~-~~--~~~~~~~~~~~~~~~~ 74 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPK-EV--LEKWKSIKESEGIPVV 74 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCH-HH--HHHHHHHHHhCCCcEE
Confidence 345677888899999999999875432221 1222222 135899999999998531 11 1122233344567899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHH
Q 028686 145 ETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.+||+++.|++++++.+.+.+.
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEccccccHHHHHHHHHHHHh
Confidence 9999999999999999987764
No 321
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.96 E-value=3.2e-08 Score=78.37 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=86.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCC----------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhh---h--
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---R-- 66 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~-- 66 (205)
..++|+++|.+|+|||||+|.|++...... ..+++.+..+...+.-++..+.+.++||||..++ .
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999998743221 3455555666666666788889999999994221 1
Q ss_pred ---------hhhhhhc--------------cCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 67 ---------TITTAYY--------------RGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 67 ---------~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.....|+ .+.|+++|.+..+.. .+..+. ..+..+.. .+-+|=|+-|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence 1111111 147888888876642 222222 12333333 356777789999743
Q ss_pred -CCCccCHHHHHHHHHHhCCcEEE
Q 028686 123 -SKRAVPTSKGQALADEYGIKFFE 145 (205)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~ 145 (205)
.+.....+.+.+.....++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 12222234445555666788774
No 322
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6e-09 Score=84.03 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=85.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC--CC--------------------CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS--FT--------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~--~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
..+|+-.|.+|||||...|+.-. +. -+....+.......++.+++ ..+.+.||||+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCCc
Confidence 46899999999999999985310 00 01223333334444555554 77899999999
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCc
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK 142 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (205)
++|..-..+.+-.+|.+++|+|+...-. .+...+++-++- .++||+-++||.|-.. .-..+.+.++.+.+++.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~---rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREG---RDPLELLDEIEEELGIQ 164 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeecccccc---CChHHHHHHHHHHhCcc
Confidence 9988766677778999999999976321 223334444433 5799999999999632 22345555666666543
No 323
>PRK12288 GTPase RsgA; Reviewed
Probab=98.95 E-value=5.2e-09 Score=84.23 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=66.9
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
..++|.+++|+++....++..+..|+..+.. .++|++||+||+||.+........+........+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999888899999999875542 4689999999999964221111122233344567899999999999
Q ss_pred CHHHHHHHHHH
Q 028686 153 NVEQVFFSIAR 163 (205)
Q Consensus 153 gi~~~~~~i~~ 163 (205)
|++++++.+..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999998865
No 324
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.95 E-value=4.4e-09 Score=82.87 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=68.0
Q ss_pred hhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686 70 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
..++.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+||.+. . .......+....+.+++.+||
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~-~--~~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDD-E--EEELELVEALALGYPVLAVSA 146 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCCh-H--HHHHHHHHHHhCCCeEEEEEC
Confidence 44588999999999999987 88888888877654 35899999999999542 1 111223334456789999999
Q ss_pred CCCCCHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIAR 163 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~ 163 (205)
+++.|+++++..+..
T Consensus 147 ~~g~gi~~L~~~L~~ 161 (287)
T cd01854 147 KTGEGLDELREYLKG 161 (287)
T ss_pred CCCccHHHHHhhhcc
Confidence 999999999988753
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3e-09 Score=89.49 Aligned_cols=114 Identities=25% Similarity=0.238 Sum_probs=80.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc---------c--------cceeeEEEEEEE---EECCEEEEEEEEeCCCh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSF---------I--------TTIGIDFKIRTI---ELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~---------~--------~t~~~~~~~~~~---~~~~~~~~~~i~D~~g~ 62 (205)
..+|+++|.-++|||+|+..|....-+... . ....+...+.++ +.+++.+-+.+.||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 468999999999999999999765422211 0 111111111222 23567788999999999
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
.+|.....+.++.+|++++|+|+.+.-.+..- ..|+..-....|+++|+||.|.
T Consensus 208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE----r~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTE----RIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred ccchHHHHHHhhhcceEEEEEEcccCceeeHH----HHHHHHHhccCcEEEEEehhHH
Confidence 99998888899999999999999876554331 1222222356999999999994
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=98.93 E-value=8.3e-09 Score=83.14 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=66.6
Q ss_pred hhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEE
Q 028686 67 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 145 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (205)
.+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+||.+. .. .+.........++.++.
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~-~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSP-TE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCCh-HH--HHHHHHHHHhcCCeEEE
Confidence 44455688999999999998875 44556667665532 46999999999999531 11 12222333466788999
Q ss_pred EcCCCCCCHHHHHHHHHH
Q 028686 146 TSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~ 163 (205)
+||+++.|++++++.+..
T Consensus 155 iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 155 ISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEcCCCCCHHHHhhhhcc
Confidence 999999999999998864
No 327
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=9e-09 Score=77.09 Aligned_cols=164 Identities=17% Similarity=0.218 Sum_probs=99.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEE--EEEECCEEEEEEEEeCCChhhhh---hhhhhhccCCcE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR--TIELDGKRIKLQIWDTAGQERFR---TITTAYYRGAMG 78 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~---~~~~~~~~~~d~ 78 (205)
-+|+++|...+||||+-........+. .|.-.+...+ .-.+.+.-+.+.+||+||+-.+- --....++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 469999999999999876665543211 1111111111 11223344779999999985421 114567889999
Q ss_pred EEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC-HHHHH-----HHHH----HhCCcEEEE
Q 028686 79 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQ-----ALAD----EYGIKFFET 146 (205)
Q Consensus 79 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~-~~~~~-----~~~~----~~~~~~~~~ 146 (205)
+|+|+|+.+. +.+.++.....+.... ++++-+=+.+.|.|...++..+. ..++. +++. ...+.++.+
T Consensus 105 LifvIDaQddy~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDDYMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHHHHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 9999999762 3333333333332222 27788889999999654333221 11111 1111 112668888
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhccc
Q 028686 147 SAKTNLNVEQVFFSIARDIKQRLADT 172 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~~~~~~~~~ 172 (205)
|..+. .|-|+|..+++.+.++.+-.
T Consensus 184 SIyDH-SIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 184 SIYDH-SIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred eecch-HHHHHHHHHHHHHhhhchhH
Confidence 88876 69999999998887776543
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.2e-08 Score=77.07 Aligned_cols=138 Identities=18% Similarity=0.172 Sum_probs=88.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC----------CC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG----------SF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~----------~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 67 (205)
+||..+|.-.-|||||..++... .+ +++... |++.....+.+.-.+-.+-..|+||+.+|-.
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r--GITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc--CceeccceeEEecCCceEEeccCCChHHHHH
Confidence 78999999999999999887431 01 112222 2333333333333334577889999999987
Q ss_pred hhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCC--ccCHHHHHHHHHHhC-
Q 028686 68 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEYG- 140 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~--~~~~~~~~~~~~~~~- 140 (205)
+...-..+.|++|+|+++++ |++-+++ .-...-++|.+ ++.||.|+.++.. +.-..+.+++..+++
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHi-------LlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHI-------LLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhh-------hhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 66666668999999999988 4444332 22222357655 4589999976322 223445667777776
Q ss_pred ----CcEEEEcCCC
Q 028686 141 ----IKFFETSAKT 150 (205)
Q Consensus 141 ----~~~~~~Sa~~ 150 (205)
.|++.-||..
T Consensus 164 ~gd~~Pii~gSal~ 177 (394)
T COG0050 164 PGDDTPIIRGSALK 177 (394)
T ss_pred CCCCcceeechhhh
Confidence 5677777644
No 329
>PRK00098 GTPase RsgA; Reviewed
Probab=98.88 E-value=8.6e-09 Score=81.61 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=64.0
Q ss_pred hccCCcEEEEEEeCCChhHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC
Q 028686 72 YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT 150 (205)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (205)
+..++|.+++|+|+.+++++.. +..|+..+.. .++|+++|+||+||.+. . ...++.....+..+.+++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~-~-~~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDD-L-EEARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCC-H-HHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999988866544 4567666543 46899999999999531 1 112233444556688999999999
Q ss_pred CCCHHHHHHHHH
Q 028686 151 NLNVEQVFFSIA 162 (205)
Q Consensus 151 ~~gi~~~~~~i~ 162 (205)
+.|+++++..+.
T Consensus 152 g~gi~~L~~~l~ 163 (298)
T PRK00098 152 GEGLDELKPLLA 163 (298)
T ss_pred CccHHHHHhhcc
Confidence 999999998863
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=8e-08 Score=72.02 Aligned_cols=146 Identities=20% Similarity=0.220 Sum_probs=83.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCC---------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-------
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------- 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------- 65 (205)
+.|+|.|+|.+|.|||||+|.|....... .++.|+.+......+.-++...++.++||||..++
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 45899999999999999999997654322 23334444555555556777889999999994321
Q ss_pred -------hhhhhhh------------cc--CCcEEEEEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCC-
Q 028686 66 -------RTITTAY------------YR--GAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE- 122 (205)
Q Consensus 66 -------~~~~~~~------------~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~- 122 (205)
...++.| +. .+++++|.+..+.. ++.-+. .++..+.+. +-++-|+-|+|-..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence 1111222 22 36677777766643 333332 133334332 45666778999532
Q ss_pred CCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 123 SKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
+++....+.+++-...+++.++.--+.+-.
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 112122233333344556776665555443
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.87 E-value=3e-09 Score=80.92 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=60.3
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 131 (205)
+.+.|++|.|--+.. -....-+|.+++|....-.+....+. ..+... .=++|+||.|.+.+ +....+
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~K---aGimEi-----aDi~vVNKaD~~gA--~~~~~~ 188 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIK---AGIMEI-----ADIFVVNKADRPGA--DRTVRD 188 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB----TTHHHH------SEEEEE--SHHHH--HHHHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHh---hhhhhh-----ccEEEEeCCChHHH--HHHHHH
Confidence 457778887643322 12344599999998776554433322 222222 23899999996442 223333
Q ss_pred HHHHHHHh-------CCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686 132 GQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 132 ~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 168 (205)
.+....-. ..+++.+||.++.|++++++.|.+.....
T Consensus 189 l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 189 LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 33333211 25899999999999999999988765443
No 332
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.86 E-value=1.8e-07 Score=70.61 Aligned_cols=85 Identities=22% Similarity=0.164 Sum_probs=59.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------hhhhhhccCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA 76 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 76 (205)
-||+++|.|.+|||||+..+....-.......+..+..+-.+.+++ -.+++.|.||.-.-. ....+..+.|
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4899999999999999999987654333333333456666677777 557889999853211 2234456789
Q ss_pred cEEEEEEeCCChhH
Q 028686 77 MGILLVYDVTDESS 90 (205)
Q Consensus 77 d~~i~v~d~~~~~s 90 (205)
|.+++|.|++..+.
T Consensus 141 DlilMvLDatk~e~ 154 (364)
T KOG1486|consen 141 DLILMVLDATKSED 154 (364)
T ss_pred cEEEEEecCCcchh
Confidence 99999999987543
No 333
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.86 E-value=1.9e-08 Score=81.62 Aligned_cols=95 Identities=23% Similarity=0.303 Sum_probs=70.6
Q ss_pred hhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH----HHH
Q 028686 62 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA----LAD 137 (205)
Q Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~----~~~ 137 (205)
.++|..+...+...++++++|+|+.+.+ ..|.+.+.+.. .+.|+++|+||+|+.+ .....+++.. +++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHH
Confidence 4578888888889999999999997643 23445555544 2579999999999964 2333444443 355
Q ss_pred HhCC---cEEEEcCCCCCCHHHHHHHHHHH
Q 028686 138 EYGI---KFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 138 ~~~~---~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
+.++ .++++||+++.|++++|+.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 6665 48999999999999999998654
No 334
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1e-07 Score=76.04 Aligned_cols=146 Identities=17% Similarity=0.170 Sum_probs=85.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCC---------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-------
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------- 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------- 65 (205)
..|.+.++|.+|.|||||+|.|+...+... ...+.........+.-+|..+.++++||||..+.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999988754321 1224444444445555778889999999994220
Q ss_pred -------hhhhhh-----------hcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-C
Q 028686 66 -------RTITTA-----------YYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-K 124 (205)
Q Consensus 66 -------~~~~~~-----------~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~ 124 (205)
.+.... .+. ..|+++|.+..+.. .+..+.- ..+.... ..+.+|-|+-|+|.... +
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di--~~Mk~l~-~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI--EFMKKLS-KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH--HHHHHHh-ccccccceeeccccCCHHH
Confidence 011111 122 58899999887653 2222211 2222222 34778888899997431 1
Q ss_pred CccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 125 RAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
.......+..-....++++|.......
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 112233334444556677665554433
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.79 E-value=1.5e-08 Score=71.56 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=38.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
+++++|.+|+|||||+|+|.+..... .....+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 68999999999999999999877532 222233333444455544 4799999995
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.77 E-value=4.1e-08 Score=75.93 Aligned_cols=107 Identities=21% Similarity=0.162 Sum_probs=64.2
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 131 (205)
+.+.|++|.|--+.. -....-+|.+++|.-.--.+...-+ -..+.... =++|+||.|..+++ ....+
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~i---K~GimEia-----Di~vINKaD~~~A~--~a~r~ 210 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGI---KAGIMEIA-----DIIVINKADRKGAE--KAARE 210 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHH---Hhhhhhhh-----heeeEeccChhhHH--HHHHH
Confidence 457888887754333 2244458888887654444433332 23333322 28999999964421 12222
Q ss_pred HHHHHH-------HhC--CcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 132 GQALAD-------EYG--IKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 132 ~~~~~~-------~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
...... ..+ -+++.+||..|+|++++++.+.+........
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 222111 122 5799999999999999999998877655443
No 337
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=1.2e-07 Score=67.96 Aligned_cols=85 Identities=22% Similarity=0.120 Sum_probs=55.5
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686 77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
|++++|+|+.++.+.... ++.. ......+.|+++|+||+|+.+. . ...+....+....+..++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~-~-~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPK-E-VLRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCH-H-HHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 689999999887654432 2221 1112246899999999998531 1 001111223233346688999999999999
Q ss_pred HHHHHHHHHH
Q 028686 157 VFFSIARDIK 166 (205)
Q Consensus 157 ~~~~i~~~~~ 166 (205)
+++.+.+...
T Consensus 76 L~~~i~~~~~ 85 (155)
T cd01849 76 KESAFTKQTN 85 (155)
T ss_pred HHHHHHHHhH
Confidence 9999987654
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.64 E-value=1.7e-07 Score=67.29 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=56.9
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
.+..+|++++|+|+.++..-. ...+...+... ..+.|+++|+||+|+.+. . ...+....+.+.+....+.+||+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~-~-~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPT-W-VTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCH-H-HHHHHHHHHhcCCcEEEEEeecccc
Confidence 466899999999998863211 11222333322 345899999999999531 1 1111122222222233577999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARDIK 166 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~ 166 (205)
.|++++++.+.+...
T Consensus 81 ~~~~~L~~~l~~~~~ 95 (157)
T cd01858 81 FGKGSLIQLLRQFSK 95 (157)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999976543
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.61 E-value=1.2e-07 Score=69.04 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=37.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 61 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (205)
.++++++|.||+|||||+|+|.+...... .+..|.+.....+.++. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 37899999999999999999998764211 12223333333333332 478999998
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.6e-07 Score=67.45 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=35.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 61 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (205)
.++|+++|.||+|||||+|+|.+.... ....+ |.+.....+..+. .+.++||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP--GETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC--CeeEeEEEEEcCC---CEEEEECcC
Confidence 467899999999999999999986532 22222 2222222333322 368999998
No 341
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.59 E-value=1.7e-07 Score=71.66 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=86.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCccc-ceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITTA 71 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~ 71 (205)
+.+++++|.+++|||+|+|-+...+....... +.|.......+.++ -.+.+.|.||- .++..+...
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 47899999999999999999988764322222 44433333333333 35788999991 123333344
Q ss_pred hccCC---cEEEEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-c--CHHHHHH-------HHH
Q 028686 72 YYRGA---MGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKRA-V--PTSKGQA-------LAD 137 (205)
Q Consensus 72 ~~~~~---d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~--~~~~~~~-------~~~ 137 (205)
|+.+- --+++++|++-+- ..+.. ..+.+.+ .++|+.+|+||+|-...-.. . ....+.. -..
T Consensus 213 Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVPI--QPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HHHhhhhhheeeeeeeccCCC--CCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence 43322 2344455655421 11111 1122222 46999999999995321110 0 0111111 111
Q ss_pred HhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 138 EYGIKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
....+.+.+|+.++.|++.++-.+.+.
T Consensus 288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 288 LVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eccCCceeeecccccCceeeeeehhhh
Confidence 223567789999999999988777654
No 342
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.59 E-value=2e-07 Score=66.84 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=38.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 61 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (205)
..+++++|.+++|||||+|+|.+... ..+.++.+.+.....+..+. .+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 46889999999999999999997653 33344555333323333332 589999998
No 343
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.58 E-value=4.4e-07 Score=68.96 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=77.1
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhhc-CCCCcEEEEEeCCC
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQHA-SDNVNKVLVGNKAD 119 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D 119 (205)
.+.++++|.+|+.+-+.-|...+.+..++|||++.+... .+.+...++..+.... -..+.+|+.+||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 367999999999998999999999999999999876411 1222223333333322 14578999999999
Q ss_pred CCCC---------------------------CCccCHHH--HHHHHH-H-------h--C---CcEEEEcCCCCCCHHHH
Q 028686 120 MDES---------------------------KRAVPTSK--GQALAD-E-------Y--G---IKFFETSAKTNLNVEQV 157 (205)
Q Consensus 120 l~~~---------------------------~~~~~~~~--~~~~~~-~-------~--~---~~~~~~Sa~~~~gi~~~ 157 (205)
+... +....+.- ++-+.. + . | +.++++.|.+-++|..+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 7321 00011111 111111 0 0 1 44567889999999999
Q ss_pred HHHHHHHHHHHhc
Q 028686 158 FFSIARDIKQRLA 170 (205)
Q Consensus 158 ~~~i~~~~~~~~~ 170 (205)
|+.....+....-
T Consensus 361 FnDcrdiIqr~hl 373 (379)
T KOG0099|consen 361 FNDCRDIIQRMHL 373 (379)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888876543
No 344
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.58 E-value=5.8e-07 Score=71.77 Aligned_cols=156 Identities=20% Similarity=0.155 Sum_probs=94.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC--------------cccceeeEEEEEEEEECCE------------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS--------------FITTIGIDFKIRTIELDGK------------------ 50 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~------------------ 50 (205)
.+.|.+.|.-..|||||+-.|..+..+.. .......+.....+-+++.
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 37889999999999999988876654321 1111111222222222211
Q ss_pred ---EEEEEEEeCCChhhhh--hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 51 ---RIKLQIWDTAGQERFR--TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 51 ---~~~~~i~D~~g~~~~~--~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
+--+.+.|+.|++.|- .+...+-.+.|..++++.+++.-+- +.. +.+-....-+.|++++.+|+|+.++++
T Consensus 197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tk--EHLgi~~a~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTK--EHLGIALAMELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhh--HhhhhhhhhcCCEEEEEEecccCcHHH
Confidence 2347899999999865 3344555679999999999885432 111 222222224699999999999965322
Q ss_pred -ccCHHHHHHHHH----------------------HhC---CcEEEEcCCCCCCHHHHHHHHH
Q 028686 126 -AVPTSKGQALAD----------------------EYG---IKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 126 -~~~~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
+-..+++..+.+ +.+ +|+|.+|+.+|+|++-+.+.+.
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 111222222211 112 6899999999999886655544
No 345
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.57 E-value=4e-07 Score=66.31 Aligned_cols=100 Identities=19% Similarity=0.141 Sum_probs=64.7
Q ss_pred CCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686 59 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137 (205)
Q Consensus 59 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (205)
.||+- +........+.++|++++|+|+.++....+. .+...+ .+.|+++|+||+|+.+. .. .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~-~~--~~~~~~~~~ 72 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADP-KK--TKKWLKYFE 72 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCCh-HH--HHHHHHHHH
Confidence 35542 3444556778899999999999876432221 112221 24799999999998531 11 111112223
Q ss_pred HhCCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
..+..++.+||+++.|++++.+.+...+..
T Consensus 73 ~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 73 SKGEKVLFVNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred hcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 334568899999999999999999887643
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.57 E-value=2e-07 Score=67.95 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=37.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
++++++|.+|+|||||+|+|.+..+.. ..+..+.+.....+.++ ..+.+|||||.
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 689999999999999999999876531 12222222333334443 34789999994
No 347
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2.4e-07 Score=73.66 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=90.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC-----------------------cccceeeEEEEEEEEECC----------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-----------------------FITTIGIDFKIRTIELDG---------- 49 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-----------------------~~~t~~~~~~~~~~~~~~---------- 49 (205)
-+|++++|...+|||||+-.|..+..+.. ...+.|.+...+.+++..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 47999999999999999988865543221 111222222222233211
Q ss_pred EEEEEEEEeCCChhhhhhhhhhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC---
Q 028686 50 KRIKLQIWDTAGQERFRTITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK--- 124 (205)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~--- 124 (205)
..--+.++|.+|+.+|......-+ ...|.+++|++++..-.... +..+-.+.. .++|++++.+|+|+.+..
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA---LNIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH---hCCCeEEEEEeeccccchhHH
Confidence 123488999999998865432222 24677888888876543321 122233322 469999999999986521
Q ss_pred -------------------Cc-cCHHHHHHHHHH----hCCcEEEEcCCCCCCHHHHH
Q 028686 125 -------------------RA-VPTSKGQALADE----YGIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 125 -------------------~~-~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~~~ 158 (205)
.. -...++-..+++ +-+|+|-+|+.+|+|++-+-
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 00 112223222322 23689999999999987443
No 348
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=1.2e-05 Score=56.92 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=81.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCC-Chh-----------------
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE----------------- 63 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-g~~----------------- 63 (205)
+.+||.+.|+||+||||++.++.+.--... .... .++...+.-+++.+-|.+.|+. |..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 568999999999999999999875321111 1222 3666677777888888888877 310
Q ss_pred ----hhh----hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH
Q 028686 64 ----RFR----TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL 135 (205)
Q Consensus 64 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~ 135 (205)
.+. .-.+..+..||+ +++|---+-.+ ....+.+.+......+.|++.++.+.+- . .-++++
T Consensus 81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr----~----P~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR----H----PLVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC----C----hHHHHh
Confidence 011 112333445674 44454333211 1123444444444456888888877642 1 112222
Q ss_pred HHHhCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 136 ADEYGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 136 ~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
....++.+| .+.+|=+.+++.++..+.
T Consensus 150 k~~~~v~v~----lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 150 KKLGGVYVF----LTPENRNRILNEILSVLK 176 (179)
T ss_pred hhcCCEEEE----EccchhhHHHHHHHHHhc
Confidence 233333333 445555578887777654
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=7.5e-07 Score=69.90 Aligned_cols=102 Identities=23% Similarity=0.175 Sum_probs=66.3
Q ss_pred CCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686 59 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137 (205)
Q Consensus 59 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (205)
.|||= +........+..+|++++|+|+..+.+.+.. .+.+.+ .+.|+++|+||+|+.+. .. .+...++..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~--~~-~~~~~~~~~ 74 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADP--AV-TKQWLKYFE 74 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCH--HH-HHHHHHHHH
Confidence 35553 3334456678899999999999876443221 111222 25799999999998531 10 111111223
Q ss_pred HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
..+.+++.+||+++.|++++.+.+.+.+.+..
T Consensus 75 ~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 75 EKGIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred HcCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999888875543
No 350
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.49 E-value=5.2e-07 Score=71.16 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=39.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
.++++++|.||+|||||+|+|.+... .....| |.+.....+.++. .+.++||||..
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRP--GVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCC--CeEEEEEEEEeCC---cEEEEECCCcC
Confidence 47899999999999999999998764 223333 3333333444443 47899999964
No 351
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.48 E-value=3.2e-07 Score=73.37 Aligned_cols=57 Identities=25% Similarity=0.190 Sum_probs=41.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
.++++|+|.||+|||||||+|.+... ....+..|.+.....+.++. .+.++||||--
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 37899999999999999999999875 22223335444444555543 37899999954
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.48 E-value=4.5e-07 Score=71.12 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=38.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
.++++++|.||+|||||+|+|.+.... ....| |.+.....+.++. .+.++||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRP--GVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCC--CeecceEEEEeCC---CEEEEECCCc
Confidence 478999999999999999999987632 22222 3233334444432 4789999997
No 353
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=8.2e-07 Score=69.84 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=85.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC----------CC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG----------SF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~----------~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 67 (205)
++|.-+|.-.-|||||..++..- +| +++... |++.....+.+.-..-.+-=.|+||+.+|-.
T Consensus 55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaR--GITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKAR--GITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhc--cceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 67888999999999998887431 11 112222 2333333333332223455569999999987
Q ss_pred hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC----
Q 028686 68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-NKVLVGNKADMDESKR--AVPTSKGQALADEYG---- 140 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---- 140 (205)
+...-....|++|+|++.+|.. ..+.+ +.+.-...-++ .+++.+||.|+.++.. +..+-+++++..++|
T Consensus 133 NMItGaaqMDGaILVVaatDG~-MPQTr---EHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGP-MPQTR---EHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HhhcCccccCceEEEEEcCCCC-CcchH---HHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 6666667899999999999842 11122 22221111234 4566689999975332 233455677888776
Q ss_pred -CcEEEEcCC
Q 028686 141 -IKFFETSAK 149 (205)
Q Consensus 141 -~~~~~~Sa~ 149 (205)
.|++.-||+
T Consensus 209 ~~PvI~GSAL 218 (449)
T KOG0460|consen 209 NTPVIRGSAL 218 (449)
T ss_pred CCCeeecchh
Confidence 678877753
No 354
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.47 E-value=6.4e-07 Score=72.27 Aligned_cols=84 Identities=17% Similarity=-0.047 Sum_probs=54.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhh--
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER-- 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-- 64 (205)
.+++.++|.|++|||||.+.|.+... .....|..+.+...-.+.+.+. ...+.+.|.||-..
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 37899999999999999999998876 4333332222222222233221 23578899999543
Q ss_pred --hhhh---hhhhccCCcEEEEEEeCC
Q 028686 65 --FRTI---TTAYYRGAMGILLVYDVT 86 (205)
Q Consensus 65 --~~~~---~~~~~~~~d~~i~v~d~~ 86 (205)
-..+ .-..++++|++++|++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1122 233567899999999974
No 355
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.46 E-value=4e-07 Score=68.01 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=79.5
Q ss_pred EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 028686 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQHA-SDNVNKVLVGNKA 118 (205)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~-~~~~piiiv~nK~ 118 (205)
..+.+.+.|.+|+..-+.-|.+.+.+...++|++.++..+ ..++-..++..|..+. ..+.++|+..||.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk 276 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 276 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence 4466889999999888888999999999888887765432 2333333444444332 2578999999999
Q ss_pred CCCCC---------------CCccCHHHHHHHHH----HhC------CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 119 DMDES---------------KRAVPTSKGQALAD----EYG------IKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 119 Dl~~~---------------~~~~~~~~~~~~~~----~~~------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
|+.++ ..+.+.+.+++|.. ..+ +.-+.+.|.+.+||.-+|..+...+++.+
T Consensus 277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 98542 11122333333332 111 23445778888899999999888887754
No 356
>PRK13796 GTPase YqeH; Provisional
Probab=98.45 E-value=1.9e-06 Score=70.16 Aligned_cols=93 Identities=24% Similarity=0.349 Sum_probs=62.9
Q ss_pred hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH----HHHh
Q 028686 64 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL----ADEY 139 (205)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~~~~ 139 (205)
++.......-...+.+++|+|+.+.. ..|...+.+.. .+.|+++|+||+||.+ .....+.+..| ++..
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhc
Confidence 45555544443344889999998743 22445555443 3579999999999964 23334444444 4455
Q ss_pred CC---cEEEEcCCCCCCHHHHHHHHHHH
Q 028686 140 GI---KFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 140 ~~---~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
++ .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998664
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.43 E-value=1.3e-06 Score=68.87 Aligned_cols=125 Identities=22% Similarity=0.206 Sum_probs=75.4
Q ss_pred CCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686 59 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137 (205)
Q Consensus 59 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (205)
.|||= +........+..+|++++|+|+.++.+.+. .++.... .+.|+++|+||+|+.+. .. .+...++..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~--~~-~~~~~~~~~ 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADP--EV-TKKWIEYFE 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCH--HH-HHHHHHHHH
Confidence 56653 233445667889999999999987654322 1112211 25899999999998531 10 112222223
Q ss_pred HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccC---CCCCCccccccCCCCCCCC
Q 028686 138 EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD---SRSEPSTIKINQPDQAGGV 192 (205)
Q Consensus 138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 192 (205)
+.+.+++.+|++++.|++++.+.+.+.+.+...... .......+-+...+..++|
T Consensus 78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKS 135 (287)
T PRK09563 78 EQGIKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKS 135 (287)
T ss_pred HcCCeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHH
Confidence 445778999999999999999998887755432111 1122334445555555444
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.42 E-value=1e-06 Score=69.32 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=60.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC---------------CEEEEEEEEeCCChhh---
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------------GKRIKLQIWDTAGQER--- 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~~--- 64 (205)
.+++.++|.|++|||||.|.|.+........|..+++.....+.+. .....++++|++|...
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 4689999999999999999999998777666766655544444331 1345789999998542
Q ss_pred -hhhhhhhh---ccCCcEEEEEEeCC
Q 028686 65 -FRTITTAY---YRGAMGILLVYDVT 86 (205)
Q Consensus 65 -~~~~~~~~---~~~~d~~i~v~d~~ 86 (205)
-..+-..| ++.+|+++.|+++.
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEec
Confidence 33444444 56799999998863
No 359
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.1e-05 Score=68.87 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=53.2
Q ss_pred EEEEeCCChh---hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH
Q 028686 54 LQIWDTAGQE---RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130 (205)
Q Consensus 54 ~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 130 (205)
+.++|.||-. ...+-...+..++|++|+|.++-+..+..+- +++... ...+..|.|+-||.|... +.+-..+
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~v---s~~KpniFIlnnkwDasa-se~ec~e 282 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKV---SEEKPNIFILNNKWDASA-SEPECKE 282 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHh---hccCCcEEEEechhhhhc-ccHHHHH
Confidence 5677889853 3444456677789999999887665443332 233333 223345666778899754 2333344
Q ss_pred HHHHHHHHhC--------CcEEEEcCCC
Q 028686 131 KGQALADEYG--------IKFFETSAKT 150 (205)
Q Consensus 131 ~~~~~~~~~~--------~~~~~~Sa~~ 150 (205)
++.+...++. -.+|+|||+.
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 4444333332 3477888653
No 360
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.39 E-value=1.2e-06 Score=61.66 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=51.7
Q ss_pred hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC
Q 028686 70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 149 (205)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (205)
...+..+|++++|+|+.++.+..+ ..+.+.+.... .+.|+++|+||+|+.+. . ...+...+.+..+..++.+||.
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~DL~~~-~--~~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKADLLTE-E--QRKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechhcCCH-H--HHHHHHHHHHhcCCeEEEEEec
Confidence 346778999999999988765432 12223332222 46899999999998531 1 1223344455566789999999
Q ss_pred CCCC
Q 028686 150 TNLN 153 (205)
Q Consensus 150 ~~~g 153 (205)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 361
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=3e-06 Score=67.52 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=71.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCc---ccceeeEEEEEEEE------ECCE-------------------------
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSF---ITTIGIDFKIRTIE------LDGK------------------------- 50 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~---~~t~~~~~~~~~~~------~~~~------------------------- 50 (205)
-|+++|.=..||||+++-|+...++... .||+. +...... ++|.
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 5899999999999999999999876432 22222 2211111 1111
Q ss_pred --------EEEEEEEeCCCh-----------hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE
Q 028686 51 --------RIKLQIWDTAGQ-----------ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111 (205)
Q Consensus 51 --------~~~~~i~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 111 (205)
--.+.++||||. ..|....+=|..++|.+|++||..--+--.+.. +.|....++.-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~---~vi~aLkG~Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFK---RVIDALKGHEDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHH---HHHHHhhCCccee
Confidence 025889999993 134455566788999999999976432212222 2233334455678
Q ss_pred EEEEeCCCCCC
Q 028686 112 VLVGNKADMDE 122 (205)
Q Consensus 112 iiv~nK~Dl~~ 122 (205)
-||.||+|..+
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 88999999865
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.36 E-value=6.3e-06 Score=62.67 Aligned_cols=84 Identities=21% Similarity=0.104 Sum_probs=51.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC--CCCCC---cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG--SFTTS---FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAY 72 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~ 72 (205)
.-|.|+|++++|||+|+|+|.+. .+... ...|.|+-.....+.. +....+.++||+|..... ......
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 45889999999999999999998 55422 2233333222222211 234679999999965321 112222
Q ss_pred ccC--CcEEEEEEeCCCh
Q 028686 73 YRG--AMGILLVYDVTDE 88 (205)
Q Consensus 73 ~~~--~d~~i~v~d~~~~ 88 (205)
+.. ++++||..+....
T Consensus 87 l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 87 LATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHhCEEEEeccCccc
Confidence 233 7878877766543
No 363
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=6e-06 Score=62.55 Aligned_cols=155 Identities=21% Similarity=0.320 Sum_probs=95.8
Q ss_pred EEEEECCCCC--cHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE--EEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 5 LRIYFERGGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 5 ~i~v~G~~~~--GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
-++|+|-+|+ ||.+|+.+|....+.....+.....++.++++.+.. ++.+.+.-.-. +.+-.. .....-..+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lpn-~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLPN-AEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccCC-cccccceeeEE
Confidence 3688999998 999999999988876665555555566555543221 12222222111 111111 11223467899
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCC-----------------------------------
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESK----------------------------------- 124 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~----------------------------------- 124 (205)
+|||++....+..+..|+..-.... .-|+ .++||.|.....
T Consensus 84 mvfdlse~s~l~alqdwl~htdins---fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs 160 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS 160 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc---chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence 9999999999999999988654332 2333 447888843210
Q ss_pred ------Cc--cCHHHHHHHHHHhCCcEEEEcCCC------------CCCHHHHHHHHHHH
Q 028686 125 ------RA--VPTSKGQALADEYGIKFFETSAKT------------NLNVEQVFFSIARD 164 (205)
Q Consensus 125 ------~~--~~~~~~~~~~~~~~~~~~~~Sa~~------------~~gi~~~~~~i~~~ 164 (205)
.. .....+.+|+.++++.+++.++.+ ..|++.+|..+...
T Consensus 161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 00 123345788899999999998843 24677777766544
No 364
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.35 E-value=8.5e-06 Score=67.07 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=80.6
Q ss_pred EEEEEE-CCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhh-cCCCC
Q 028686 42 IRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQH-ASDNV 109 (205)
Q Consensus 42 ~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~ 109 (205)
...+.+ .+ ..+.++|++|+..-+.-|.+++.+++++|||+++++.+ .+.+...+++.+-.. ...+.
T Consensus 227 e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~ 304 (389)
T PF00503_consen 227 EIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNT 304 (389)
T ss_dssp EEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTS
T ss_pred EEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccC
Confidence 334444 44 67899999999988899999999999999999986522 133333444444332 22579
Q ss_pred cEEEEEeCCCCCC-----CC----------Cc--cCHHHHHHHHHH-h-----------CCcEEEEcCCCCCCHHHHHHH
Q 028686 110 NKVLVGNKADMDE-----SK----------RA--VPTSKGQALADE-Y-----------GIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 110 piiiv~nK~Dl~~-----~~----------~~--~~~~~~~~~~~~-~-----------~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|++|++||.|+.. .. .. -..+.+..+... + .+.++.++|.+..++..+|+.
T Consensus 305 ~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~ 384 (389)
T PF00503_consen 305 PIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNA 384 (389)
T ss_dssp EEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHH
T ss_pred ceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHH
Confidence 9999999999521 11 11 234444444331 1 135668889988899999988
Q ss_pred HHHHH
Q 028686 161 IARDI 165 (205)
Q Consensus 161 i~~~~ 165 (205)
+.+.+
T Consensus 385 v~~~i 389 (389)
T PF00503_consen 385 VKDII 389 (389)
T ss_dssp HHHHH
T ss_pred hcCcC
Confidence 87653
No 365
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.33 E-value=3.2e-06 Score=60.80 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=36.3
Q ss_pred EEEEEEeCCChhhhhhhhhh--------hccCCcEEEEEEeCCChhHH-HHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 52 IKLQIWDTAGQERFRTITTA--------YYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
....++|++|..+...+... ..-..+.++.++|..+-... .+...+.+++... + +|++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence 45678899997543333222 22357889999997653321 1222233444332 1 778999986
No 366
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=4.3e-07 Score=70.47 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=101.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC---CCCCcccceeeEEEEE---EEEE--------------------------CC-
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIR---TIEL--------------------------DG- 49 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~t~~~~~~~~---~~~~--------------------------~~- 49 (205)
.++|.-+|....||||++.++.+-. |..+....+.+-..+. .+.. .+
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 4889999999999999999886642 2111111111111000 0000 00
Q ss_pred -----EEEEEEEEeCCChhhhh-hh-hhhhccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686 50 -----KRIKLQIWDTAGQERFR-TI-TTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 118 (205)
Q Consensus 50 -----~~~~~~i~D~~g~~~~~-~~-~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~ 118 (205)
---.+.+.|+||++-.- .+ ..+. -.|++++++..+. +++-+++ ..+..+. =..++++-||.
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaA--vmDaalLlIA~NEsCPQPQTsEHL----aaveiM~--LkhiiilQNKi 189 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAA--VMDAALLLIAGNESCPQPQTSEHL----AAVEIMK--LKHIIILQNKI 189 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchH--HhhhhhhhhhcCCCCCCCchhhHH----HHHHHhh--hceEEEEechh
Confidence 01257899999998533 22 2222 3567777776655 4444443 3332222 25788899999
Q ss_pred CCCCCCCc-cCHHHHHHHHHHh---CCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCcccccc
Q 028686 119 DMDESKRA-VPTSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKIN 184 (205)
Q Consensus 119 Dl~~~~~~-~~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 184 (205)
||..++.. ...+++++|.+.- +.|++.+||.-++||+-+.++|...+..-. .+..+.|+=+-+.
T Consensus 190 Dli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv--Rdf~s~prlIVIR 257 (466)
T KOG0466|consen 190 DLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV--RDFTSPPRLIVIR 257 (466)
T ss_pred hhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc--cccCCCCcEEEEE
Confidence 99753221 2244556665533 479999999999999999999998875433 3344555544443
No 367
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.3e-07 Score=74.76 Aligned_cols=117 Identities=18% Similarity=0.144 Sum_probs=85.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC--------CCCCc--------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS--------FTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~--------~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 67 (205)
-+|.++..-.+||||...+++... ++... ..--|++..+..++++++..++.++||||+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 468899999999999999986531 11111 11124456666677777778899999999999998
Q ss_pred hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
..++.++-.|+++.|||.+..-.-..+..|. +....++|-+..+||+|...++
T Consensus 118 everclrvldgavav~dasagve~qtltvwr----qadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWR----QADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeeh----hccccCCchhhhhhhhhhhhhh
Confidence 8999999999999999998753333344443 3334679999999999975443
No 368
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.32 E-value=5.2e-06 Score=76.96 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=67.8
Q ss_pred EEECCCCCcHHHHHHHHHhCCCCCCc------ccceeeEEEEEEEEECCEEEEEEEEeCCChh--------hhhhhhhhh
Q 028686 7 IYFERGGVGKSCLLLRFSDGSFTTSF------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY 72 (205)
Q Consensus 7 ~v~G~~~~GKtsli~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~ 72 (205)
+|+|++|+||||+++.- +..++-.. ....+.+. .+...+.. ...++|++|.. .....|..+
T Consensus 115 lviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 115 LVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence 79999999999999876 33332110 11111111 12222222 34688999943 122335444
Q ss_pred cc---------CCcEEEEEEeCCCh-----hH----HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 73 YR---------GAMGILLVYDVTDE-----SS----FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 73 ~~---------~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
+. -.+++|+++|+.+- +. -..++..++++....+-.+|+.|+++|+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 32 48999999998652 11 12445566666666667899999999999864
No 369
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.31 E-value=1.8e-06 Score=61.87 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=35.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
.+++++|.+|+|||||+|.|.+... .....+..+.... .+.++ ..+.++||||.
T Consensus 101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 101 ITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence 6799999999999999999998653 2222222222222 22222 24789999983
No 370
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.28 E-value=2.6e-05 Score=63.55 Aligned_cols=152 Identities=18% Similarity=0.275 Sum_probs=85.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC-----------------CCCC----cccceeeEEEEE---EEEE-CCEEEEEEEEe
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS-----------------FTTS----FITTIGIDFKIR---TIEL-DGKRIKLQIWD 58 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~-----------------~~~~----~~~t~~~~~~~~---~~~~-~~~~~~~~i~D 58 (205)
|=|.|+|+-.+|||||+.||...- .+.+ ..-|+.+-|.+. .+.+ ++-.+++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 447899999999999999996531 1111 111112222221 2333 46678999999
Q ss_pred CCCh--------h-----hh-hhhh---------------hhhccC--CcEEEEEEeCC--C--hhHHHHHHH-HHHHHH
Q 028686 59 TAGQ--------E-----RF-RTIT---------------TAYYRG--AMGILLVYDVT--D--ESSFNNIRN-WIRNIE 102 (205)
Q Consensus 59 ~~g~--------~-----~~-~~~~---------------~~~~~~--~d~~i~v~d~~--~--~~s~~~~~~-~~~~i~ 102 (205)
|-|- . ++ ..-| ...+.. .-++++.-|-+ + ++.|..+.. ..+++.
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 9871 0 00 0001 111222 12444444433 2 556655543 444444
Q ss_pred hhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC--CCCCHHHHHHHH
Q 028686 103 QHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK--TNLNVEQVFFSI 161 (205)
Q Consensus 103 ~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~~~~~i 161 (205)
. -+.|+++++|-.+= ......+.+.++..+++++++.+++. +..+|..++..+
T Consensus 178 ~---igKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 178 E---IGKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred H---hCCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 4 46899999998762 23345666777888999998888764 334455544443
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=98.28 E-value=4.6e-06 Score=67.75 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=58.3
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCC
Q 028686 72 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKT 150 (205)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 150 (205)
+..++|.+++|+++...-....+..++..+.. .++|.+||+||+||.+. ..+....+.. ..+.+++.+|+++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~----~~~~~~~~~~~~~g~~Vi~vSa~~ 181 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCED----AEEKIAEVEALAPGVPVLAVSALD 181 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCC----HHHHHHHHHHhCCCCcEEEEECCC
Confidence 35789999999999744344455555555544 46888999999999642 1112222222 3468999999999
Q ss_pred CCCHHHHHHHHH
Q 028686 151 NLNVEQVFFSIA 162 (205)
Q Consensus 151 ~~gi~~~~~~i~ 162 (205)
+.|++++..++.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999988874
No 372
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4.3e-06 Score=71.91 Aligned_cols=109 Identities=22% Similarity=0.249 Sum_probs=77.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CC------------CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS--FT------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 69 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~--~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 69 (205)
-+|+++..-..|||||+..|.... .+ .+...+-|++-.+..+..-.+++.+.++|+||+.+|.+..
T Consensus 10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev 89 (887)
T KOG0467|consen 10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV 89 (887)
T ss_pred eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence 478999999999999999986532 11 1112233333444444444456889999999999999999
Q ss_pred hhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686 70 TAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 119 (205)
....+-+|++++++|+... ++..-+++ .-..+...++|+||+|
T Consensus 90 ssas~l~d~alvlvdvvegv~~qt~~vlrq-------~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 90 SSASRLSDGALVLVDVVEGVCSQTYAVLRQ-------AWIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhcCCcEEEEeeccccchhHHHHHHH-------HHHccCceEEEEehhh
Confidence 8888999999999999873 33333322 2124567799999999
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.26 E-value=1.4e-06 Score=64.47 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.+++++|.+|+|||||+|.|.+..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999854
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.24 E-value=7.8e-06 Score=65.29 Aligned_cols=96 Identities=22% Similarity=0.179 Sum_probs=56.7
Q ss_pred EEEEEEEeCCChhhhhhh----hhhh--------ccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686 51 RIKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNK 117 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK 117 (205)
.+.+.++||||....... ...+ -...+..++|.|++... .+..+ ..+.+.. -+--+|.||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a----~~f~~~~---~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA----KAFHEAV---GLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH----HHHHhhC---CCCEEEEEC
Confidence 356899999996432211 1111 12466788999998643 33322 2222211 244788999
Q ss_pred CCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 118 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
.|... . .-.+..++...++|+..++ +|++++++-..
T Consensus 269 lD~t~-~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 269 LDGTA-K----GGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCCCC-C----ccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 99532 1 2344555667789988888 77888766443
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.23 E-value=1.5e-06 Score=62.24 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|.+|||||||+|.|....
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999874
No 376
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2.2e-05 Score=65.94 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=75.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
++=++|+|+||+|||||++.|...-.........| +.+ -+.++.-.+++..+|. +...+. ...+-||.++++
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl 140 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL 140 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence 35678999999999999998876432111111111 112 2345666789999992 222222 234459999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEE-EEEeCCCCCCCCCccCHHHHHH------HHHH-hCCcEEEEcCC
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRAVPTSKGQA------LADE-YGIKFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~~------~~~~-~~~~~~~~Sa~ 149 (205)
+|.+-.=.++.+ .+++.+.. ++.|-+ -|+++.||... ......+.+ |..- .|+.+|.+|-.
T Consensus 141 IdgnfGfEMETm-EFLnil~~---HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 141 IDGNFGFEMETM-EFLNILIS---HGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred eccccCceehHH-HHHHHHhh---cCCCceEEEEeecccccC--hHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 998863222211 12343333 455554 56899998642 233333322 2221 25788888854
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.18 E-value=1.2e-05 Score=62.94 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=57.4
Q ss_pred EEEEEEEeCCChhhhhhhh----hh---hc-----cCCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686 51 RIKLQIWDTAGQERFRTIT----TA---YY-----RGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNK 117 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK 117 (205)
.+.+.++||+|........ .. .. ...|..++|+|++.. +.+..+ ..+.+.. -+.-+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEEc
Confidence 3578999999965322211 11 11 237889999999763 233332 2222222 245788999
Q ss_pred CCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 118 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
.|... ..-.+..+....+.|+..++ +|++++++-..
T Consensus 227 lDe~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 227 LDGTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred cCCCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 99633 12344555566788988887 77778766443
No 378
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=6e-06 Score=69.48 Aligned_cols=112 Identities=20% Similarity=0.127 Sum_probs=72.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC-----CCCCcccc-----------eeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS-----FTTSFITT-----------IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 68 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~-----~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (205)
+|.+.-.-.+||||+-++.+... +.+..... -|+...+-...+.++++.+.++||||+.+|.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 56677777899999999986542 11111111 111222222233445788999999999999888
Q ss_pred hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 69 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
.++.++-.|++++|++....-.-.....|.+. .+ -++|-+..+||+|-
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDR 168 (721)
T ss_pred ehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhh
Confidence 88899999999999987663211222233333 33 35899999999994
No 379
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.16 E-value=7.4e-06 Score=59.44 Aligned_cols=135 Identities=21% Similarity=0.241 Sum_probs=70.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeC-CChh--------------------
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQE-------------------- 63 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~-~g~~-------------------- 63 (205)
+|++.|.||+|||||+++++..-- ....+..| ++...+.-++..+-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999875321 11123333 55555555666666677666 3311
Q ss_pred --hhhhhhhhhc----cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC-CCCCCCCccCHHHHHHHH
Q 028686 64 --RFRTITTAYY----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA-DMDESKRAVPTSKGQALA 136 (205)
Q Consensus 64 --~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~-Dl~~~~~~~~~~~~~~~~ 136 (205)
.+.......+ ..++ ++|+|---+-. .....|.+.+......+.|++.++-+. +. ..++++.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~ 145 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIK 145 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHH
Confidence 1111111112 3445 66766432110 011234555555555668888888776 32 2245555
Q ss_pred HHhCCcEEEEcCCCCCCH
Q 028686 137 DEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 137 ~~~~~~~~~~Sa~~~~gi 154 (205)
...++.+++++..+...+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 666788888877766544
No 380
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=2e-05 Score=61.65 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=65.9
Q ss_pred hhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEE
Q 028686 67 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE 145 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (205)
.+.+..+.+.|-.++|+++.+|+ +...+..++-.... .++..+|++||+||.++..... ++........|++.+.
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLF 146 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEE
Confidence 34444455688888888888875 44445444444333 5688888999999976432221 4566677788999999
Q ss_pred EcCCCCCCHHHHHHHHHHH
Q 028686 146 TSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~ 164 (205)
+|++++.+++++..++...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999998886543
No 381
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.10 E-value=1.9e-05 Score=60.19 Aligned_cols=83 Identities=24% Similarity=0.190 Sum_probs=52.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------hhhhhhhhccCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRGA 76 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 76 (205)
++.++|.|.+||||++..+.+...+. .+..|. ....+-.+.+++ -++++.|.||.-+ .-....+..+.+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyeftt-l~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTT-LTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCcccccccee-EEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 78999999999999999998865322 222211 112222333444 4688999998532 112234456679
Q ss_pred cEEEEEEeCCChhH
Q 028686 77 MGILLVYDVTDESS 90 (205)
Q Consensus 77 d~~i~v~d~~~~~s 90 (205)
+.+++|.|+.-|-+
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 99999999866543
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.09 E-value=8.1e-06 Score=66.44 Aligned_cols=54 Identities=26% Similarity=0.239 Sum_probs=35.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC------CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
+++++|.+|+|||||+|+|++... .....|.++ .....+.+++ .+.++||||..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT--~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT--LDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeE--eeEEEEEeCC---CCEEEECCCCC
Confidence 799999999999999999998532 122223222 2233344422 25799999965
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.08 E-value=6.1e-06 Score=67.25 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=35.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCC----CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSF----TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
.+++++|.+|||||||+|+|+.... .....+..|.+.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 3689999999999999999986431 1111122222233333444332 4789999974
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=98.06 E-value=7.8e-06 Score=66.04 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=34.6
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCC-CCccc---ceeeE--EEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFT-TSFIT---TIGID--FKIRTIELDGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~-~~~~~---t~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (205)
++|+|.+|||||||+|+|++.... ....+ .-|.+ .....+.+++. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 689999999999999999976421 11111 11111 11222333321 2589999987544
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=98.03 E-value=2.1e-05 Score=63.16 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=56.1
Q ss_pred EEEEEEeCCChhhhhh----hhhhhc--cCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT----ITTAYY--RGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
+.+.++||+|...... ....+. .+.|..++|.|+...+. .+.+ ..+.... -+--+++||.|... .
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~---~~~giIlTKlD~~~-~ 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV---GIDGVILTKVDADA-K 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC---CCCEEEEeeecCCC-C
Confidence 4589999999653211 112221 25788899999876432 2222 2222211 23467899999743 1
Q ss_pred CccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 125 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
.-.+..++...+.|+..++ +|++++++..+
T Consensus 295 ----~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 ----GGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ----ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 2233444556688888887 78888877544
No 386
>PRK13695 putative NTPase; Provisional
Probab=98.02 E-value=0.00015 Score=52.88 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=43.7
Q ss_pred hhccCCcEEEEEEeC---CChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686 71 AYYRGAMGILLVYDV---TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
..+..+++ +++|- .+..+ ..+.+.+......+.|++++.+|... .....++....+..+++++
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~--------~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV--------HPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh--------HHHHHHHhccCCcEEEEEc
Confidence 34456665 67773 22211 22334444443456899999998532 1234445555566777774
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 028686 148 AKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 148 a~~~~gi~~~~~~i~~~~ 165 (205)
.+|=+++.+.+++.+
T Consensus 158 ---~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 158 ---PENRDSLPFEILNRL 172 (174)
T ss_pred ---chhhhhHHHHHHHHH
Confidence 344457777777755
No 387
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.01 E-value=7.3e-05 Score=59.80 Aligned_cols=95 Identities=8% Similarity=0.146 Sum_probs=50.3
Q ss_pred EEEEEEeCCChhhhhhhhhhhcc--------CCcEEEEEEeCCChhHHH-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 52 IKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
....++++.|..+...+...+.. ..+.++.|+|+.+-.... +......++.. .+ +|++||.|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD---~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CC---EEEEeccccCC
Confidence 44677888887655544444321 257888999987532211 11111222322 22 88999999865
Q ss_pred CCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHH
Q 028686 123 SKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~ 158 (205)
+ .+.+.+..+..+ ++++.++ ........+|
T Consensus 165 ~-----~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 165 E-----AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred H-----HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 2 144555555444 5665443 2223444444
No 388
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.00 E-value=0.00021 Score=60.03 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=50.4
Q ss_pred EEEEEeCCCh-------------hhhhhhhhhhccCCcEEEEEEe-CCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCC
Q 028686 53 KLQIWDTAGQ-------------ERFRTITTAYYRGAMGILLVYD-VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 118 (205)
Q Consensus 53 ~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~ 118 (205)
...+.|.||- +..-.+..++..+.+++|+|+- -+--..=..+. ..+.+....+...|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVT---DLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVT---DLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHH---HHHHhcCCCCCeeEEEEeec
Confidence 4778899983 1234556788899999999983 22111111222 23334444678899999999
Q ss_pred CCCCCCCccCHHHHHHHHH
Q 028686 119 DMDESKRAVPTSKGQALAD 137 (205)
Q Consensus 119 Dl~~~~~~~~~~~~~~~~~ 137 (205)
||.+ .+-.++..++++..
T Consensus 490 DlAE-knlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAE-KNVASPSRIQQIIE 507 (980)
T ss_pred chhh-hccCCHHHHHHHHh
Confidence 9975 33345566665544
No 389
>PRK12289 GTPase RsgA; Reviewed
Probab=98.00 E-value=1e-05 Score=65.43 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++|+|.+|+|||||+|.|++..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999999764
No 390
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.99 E-value=1.3e-05 Score=61.78 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|.+|+|||||+|+|.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 57899999999999999998764
No 391
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00045 Score=58.47 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=61.9
Q ss_pred EEEEEEEeCCChhhhhhh----hhhhc-cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 51 RIKLQIWDTAGQERFRTI----TTAYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~----~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
.+.+.|+||+|....... ...+. ......++|++.+. +..++...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~----~~~~gvILTKlDEt~--- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH----AKPQGVVLTKLDETG--- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh----hCCeEEEEecCcCcc---
Confidence 357899999996432211 00010 01224566667664 33334333333332 245678999999632
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcCCCCCCH-HHHH----HHHHHHHHHHhcccCCCCCC
Q 028686 126 AVPTSKGQALADEYGIKFFETSAKTNLNV-EQVF----FSIARDIKQRLADTDSRSEP 178 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~~----~~i~~~~~~~~~~~~~~~~~ 178 (205)
..-.+..+....+.++..++. |..| +++. ..+++.+....+..++-..+
T Consensus 499 --~lG~aLsv~~~~~LPI~yvt~--GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~~~~~ 552 (559)
T PRK12727 499 --RFGSALSVVVDHQMPITWVTD--GQRVPDDLHRANAASLVLRLEDLRRAADKPCTP 552 (559)
T ss_pred --chhHHHHHHHHhCCCEEEEeC--CCCchhhhhcCCHHHHHHHHHHHHhhccCCCCh
Confidence 235566666677777666653 3444 2322 23666777766666655433
No 392
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.88 E-value=1.6e-05 Score=65.77 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=38.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
+.|.++|.|||||||+||.|.+.+. .....|.-+..|....+ . -.+.+-||||..
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--S---PSVCLCDCPGLV 370 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--C---CCceecCCCCcc
Confidence 7899999999999999999999984 23333433334443333 2 136778999954
No 393
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.85 E-value=8e-05 Score=56.06 Aligned_cols=61 Identities=25% Similarity=0.224 Sum_probs=39.2
Q ss_pred EEEEEeCC-ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCC-CcEEEEEeCCCC
Q 028686 53 KLQIWDTA-GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVGNKADM 120 (205)
Q Consensus 53 ~~~i~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piiiv~nK~Dl 120 (205)
.+.+.||- |.++|. +...+++|.+|+|+|.+. .|+.......+.... .+ .++.+|+||.|-
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~e---lg~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEE---LGIKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHH---hCCceEEEEEeeccc
Confidence 46666763 444433 456778999999999885 355554333222222 23 789999999983
No 394
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.85 E-value=0.00047 Score=55.14 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=53.9
Q ss_pred EEEEEEeCCChhhhhhhhhhhcc--------CCcEEEEEEeCCChhHHHH-HHH-HHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686 52 IKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSFNN-IRN-WIRNIEQHASDNVNKVLVGNKADMD 121 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~-~~~~i~~~~~~~~piiiv~nK~Dl~ 121 (205)
....++++.|-.........+.. ..|+++-|+|+.+-..... +.. ...++.. .+ +|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD---~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---AD---VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---Cc---EEEEecccCC
Confidence 44667788885544333322222 3677888988876332221 222 2233322 12 8999999997
Q ss_pred CCCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHH
Q 028686 122 ESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~ 159 (205)
++. ..+..+......+ ++++.++. .+.+..+++.
T Consensus 159 ~~~---~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 159 DAE---ELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CHH---HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 643 1455555565555 67777766 3334444443
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.84 E-value=4e-05 Score=60.47 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=35.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-cccc---ee--eEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTS-FITT---IG--IDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t---~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
.++++|.+|+|||||+|.|.+...... ..+. .| .+.....+.+.+. ..++|+||...+
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 589999999999999999987643211 1110 11 1122223333321 258999998654
No 396
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=2.9e-05 Score=60.72 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++|.+|+|||||+|+|...
T Consensus 167 svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred EEEECCCCCcHHHHHHhhCch
Confidence 578999999999999999864
No 397
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.84 E-value=0.00011 Score=58.90 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
+.+||+++|...+|||||+-.|..+
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeec
Confidence 4589999999999999998776554
No 398
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.00015 Score=55.93 Aligned_cols=114 Identities=21% Similarity=0.294 Sum_probs=69.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCC----cccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------hhh---
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRT--- 67 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~--- 67 (205)
+.|+|+.+|..|.|||||+..|.+-++... ..|+.......+.+.-.+..+++.+.||.|..+ |..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 458999999999999999999999886543 233444333333333356678899999998311 111
Q ss_pred ----hhhhhc---------------cCCcEEEEEEeCCChhHHHHHHH-HHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 68 ----ITTAYY---------------RGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 68 ----~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
..+.|+ ...++++|.+..+. .++..+.. .+..+. ..+-||-++-|+|.
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld----skVNIIPvIAKaDt 188 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD----SKVNIIPVIAKADT 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh----hhhhhHHHHHHhhh
Confidence 111111 24667888877774 35544432 223333 23555656678775
No 399
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.82 E-value=8.7e-05 Score=43.21 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=30.8
Q ss_pred cCCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686 74 RGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 119 (205)
.-.++++|++|++... +.++-..+++.++... .+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3478999999999754 5666667888888877 4799999999998
No 400
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.80 E-value=5.1e-05 Score=55.61 Aligned_cols=81 Identities=21% Similarity=0.198 Sum_probs=41.6
Q ss_pred EEEEEEeCCChhhhhhh------hhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRTI------TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
....++.+.|......+ ... .-..+.+|.|+|+.+-.....+...+..-...+ + +|++||.|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A--D---vIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFA--D---VIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhc--C---EEEEeccccCChh-
Confidence 45677788886554443 111 124678899999976433333333222222222 2 8899999986532
Q ss_pred ccCHHHHHHHHHHhC
Q 028686 126 AVPTSKGQALADEYG 140 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~ 140 (205)
...+..+++.++.+
T Consensus 158 -~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 -QKIERVREMIRELN 171 (178)
T ss_dssp ---HHHHHHHHHHH-
T ss_pred -hHHHHHHHHHHHHC
Confidence 12244455554443
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0005 Score=56.01 Aligned_cols=138 Identities=13% Similarity=0.108 Sum_probs=70.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC---CCCcccceeeEEE------------------EEEEEE---------CCEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF---TTSFITTIGIDFK------------------IRTIEL---------DGKRIKL 54 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~---~~~~~~t~~~~~~------------------~~~~~~---------~~~~~~~ 54 (205)
.++|+|++|+||||++..|...-. ..........+.+ ...+.- .-....+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 578999999999999999865311 0000000111111 000000 0023468
Q ss_pred EEEeCCChhhhhhh----hhhh--ccCCcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCC--CcEEEEEeCCCCCCCCC
Q 028686 55 QIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDESKR 125 (205)
Q Consensus 55 ~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~Dl~~~~~ 125 (205)
.++||+|....+.. ...+ .....-.++|++.+. .+...++..-+.......... -+--+|++|.|-..
T Consensus 219 VLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--- 295 (374)
T PRK14722 219 VLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--- 295 (374)
T ss_pred EEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC---
Confidence 89999996633221 1111 112344578888876 444444433333332111000 12357789999532
Q ss_pred ccCHHHHHHHHHHhCCcEEEEc
Q 028686 126 AVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~S 147 (205)
..-.+..+....+.|+..++
T Consensus 296 --~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 --NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred --CccHHHHHHHHHCcCeEEEe
Confidence 23445566667777766554
No 402
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.75 E-value=0.00012 Score=60.53 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=36.4
Q ss_pred EEEEEEEeCCChhhhhhh----hhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 51 RIKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
.+.+.|+||+|....... ...+ ....+.+++|.|+.-.+.-.+. ...+.... -+--+|+||.|.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~~---~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDSV---DVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhcc---CCcEEEEECccC
Confidence 357899999996533211 1111 2246788999998765332222 22232211 355678899985
No 403
>PRK00098 GTPase RsgA; Reviewed
Probab=97.73 E-value=6.7e-05 Score=59.55 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|.+|+|||||+|.|.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999998764
No 404
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.73 E-value=5.3e-05 Score=56.10 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=62.9
Q ss_pred EEEEEeCCChhhhh---hhhhhhccC------CcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 53 KLQIWDTAGQERFR---TITTAYYRG------AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 53 ~~~i~D~~g~~~~~---~~~~~~~~~------~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.+.++|+||+-... ...+.+++. --..+++.|..- -++...+...+..+.......+|-|=|.+|+||..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 57899999985421 222222221 113455555432 23333444444444444445789999999999854
Q ss_pred CCCccCHHHHHHH-------------------------------HHHhC-CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 123 SKRAVPTSKGQAL-------------------------------ADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 123 ~~~~~~~~~~~~~-------------------------------~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
. ...+++++| ...++ +.+++....+.+.|+.++..|-.++.-..
T Consensus 179 ~---~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~E 254 (273)
T KOG1534|consen 179 D---KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGE 254 (273)
T ss_pred h---hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3 111111111 11223 46777888888888888888777665443
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.71 E-value=0.00055 Score=49.76 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=43.9
Q ss_pred EEEEEEeCCChhhhh----hhhhhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFR----TITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
..+.++|++|..... .....+. ...+.+++|+|....+.. ..+...+.+.. + ...+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~~-- 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDAR-- 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence 457889999964221 1111111 248899999998654322 22333333322 2 34677899996432
Q ss_pred ccCHHHHHHHHHHhCCcEE
Q 028686 126 AVPTSKGQALADEYGIKFF 144 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (205)
...+...+...++|+.
T Consensus 155 ---~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 155 ---GGAALSIRAVTGKPIK 170 (173)
T ss_pred ---cchhhhhHHHHCcCeE
Confidence 1222335566666644
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.71 E-value=0.00024 Score=50.43 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=35.2
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 119 (205)
.+.+.++||+|..... ..++..+|-+++|....-.+.+.-+. ...+.. -=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k--~~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK--AGIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh--hhHhhh------cCEEEEeCCC
Confidence 3568899998865322 34778899888887665333332221 122221 2278899987
No 407
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.67 E-value=0.0006 Score=50.78 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=46.4
Q ss_pred EEEEEEeCCChhhhhh----hhhhhcc--CCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT----ITTAYYR--GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
+.+.++||+|...... ....++. ..+-+++|.+++..+ ..+.+.. ..... -+--++.+|.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~----~~~~~---~~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA----FYEAF---GIDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH----HHHHS---STCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH----Hhhcc---cCceEEEEeecCCC--
Confidence 4589999999543221 1111111 466788888887754 2332222 22221 12356799999532
Q ss_pred CccCHHHHHHHHHHhCCcEEEEc
Q 028686 125 RAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
..-.+..++...+.|+-.++
T Consensus 155 ---~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 ---RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ---TTHHHHHHHHHHTSEEEEEE
T ss_pred ---CcccceeHHHHhCCCeEEEE
Confidence 23456666777788766665
No 408
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.00051 Score=47.68 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.+++.|++|+|||++++.+.+.-
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998764
No 409
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.63 E-value=0.00043 Score=45.84 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=49.8
Q ss_pred EEEEC-CCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 6 RIYFE-RGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 6 i~v~G-~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
|++.| ..|+||||+...|...--. ...++.-. +.+.. +.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~-------d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLI-------DLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEE-------eCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 5689999998776543211 11122221 22211 568999999875332 3366777999999887
Q ss_pred CCChhHHHHHHHHHH
Q 028686 85 VTDESSFNNIRNWIR 99 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~ 99 (205)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 65 456666666555
No 410
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0003 Score=64.54 Aligned_cols=113 Identities=20% Similarity=0.188 Sum_probs=63.0
Q ss_pred EEECCCCCcHHHHHHHHHhCC-CCCC--cccceeeEEEEEEEEECCEEEEEEEEeCCChh--------hhhhhhhhh---
Q 028686 7 IYFERGGVGKSCLLLRFSDGS-FTTS--FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY--- 72 (205)
Q Consensus 7 ~v~G~~~~GKtsli~~l~~~~-~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~--- 72 (205)
+|+|++|+||||++..--..- +... .....+.....+...+. -.-.++||.|.. .....|..+
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~---deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFT---DEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccc---cceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 689999999999976432211 1110 01111111111111111 245778998843 123344444
Q ss_pred ------ccCCcEEEEEEeCCC-----h-hH---HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 73 ------YRGAMGILLVYDVTD-----E-SS---FNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 73 ------~~~~d~~i~v~d~~~-----~-~s---~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.+-.+++|+..|+.+ + +- ...++.-++++.....-..|++|++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 235889999999865 1 11 12233345555555556799999999999864
No 411
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00015 Score=58.63 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=88.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--C-----------------------------CCCcccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (205)
-++++++|.-.+||||+-..+.... + .++....-........+....
T Consensus 79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~-- 156 (501)
T KOG0459|consen 79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN-- 156 (501)
T ss_pred CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc--
Confidence 4789999999999999866653321 0 000110000111112222222
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCcc
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAV 127 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~ 127 (205)
-.+.+.|.||+..|-.....-..+||+.++|+++.-. -.|+.--+-.+...-+.. .-...|+++||+|-+..++..
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 3588999999988776555555679999999887432 234433222222221111 235678889999965433221
Q ss_pred -----CHHHHHHHHHHhC------CcEEEEcCCCCCCHHHHHH
Q 028686 128 -----PTSKGQALADEYG------IKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 128 -----~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 159 (205)
..+.+..|....| ..++++|..+|.++++...
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1223334444333 6689999999999887654
No 412
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.57 E-value=0.00063 Score=45.40 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh
Q 028686 10 ERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES 89 (205)
Q Consensus 10 G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 89 (205)
+..|+||||+...|...--......+.-.|.... .. -.+.++|+|+..... ....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~-~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FG-DDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CC-CCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence 5567999998776643211110112111111111 00 158999999865332 344667899999888665 45
Q ss_pred HHHHHHHHHHHHHhhcCC-CCcEEEEEeC
Q 028686 90 SFNNIRNWIRNIEQHASD-NVNKVLVGNK 117 (205)
Q Consensus 90 s~~~~~~~~~~i~~~~~~-~~piiiv~nK 117 (205)
++..+..+.+.+.....+ ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 677777777777665433 4567777775
No 413
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.55 E-value=6.9e-05 Score=60.33 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=41.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
-|++.|+|.|++||||+||+|.....-. .-++.|.+.....+..+. .+.+.|.||..
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCcee
Confidence 4899999999999999999999887421 123334445555555543 57888999964
No 414
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.52 E-value=0.00097 Score=43.00 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=53.7
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-hhhhccCCcEEEEEEe
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD 84 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 84 (205)
+++.|.+|+||||+...+...--... .+. .-++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 57889999999999988865421111 111 1111 5788999986543321 1445567888888887
Q ss_pred CCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEe
Q 028686 85 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGN 116 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~n 116 (205)
.... +........+...... ....++.++.|
T Consensus 68 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEAL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cchh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 7643 3444433322222222 23345555544
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.00071 Score=55.97 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=48.5
Q ss_pred EEEEEEeCCChhhhh----hhhhhhc--cCCcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFR----TITTAYY--RGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
..+.++||+|..... .....+. ....-.++|.|++. .+.+.++ ...+.. --+--++++|.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~---~~~f~~----~~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV---ISAYQG----HGIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH---HHHhcC----CCCCEEEEEeeeCCC--
Confidence 457899999965422 1122221 12345678888874 3334333 222221 123357899999532
Q ss_pred CccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 125 RAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
..-.+..++...+.++..++ +|.+|
T Consensus 341 ---~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 ---SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred ---CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 23445566677777766665 34455
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.48 E-value=0.00091 Score=55.59 Aligned_cols=86 Identities=20% Similarity=0.135 Sum_probs=48.4
Q ss_pred EEEEEEeCCChhhhhh-h---hhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT-I---TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
+.+.++||+|...... + ...+ .-..+.+++|+|....+ ++..+...+.... -..-+|.||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc---
Confidence 5689999999542211 1 1111 22477889999987543 3333334443222 12357799999532
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcC
Q 028686 126 AVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
..-.+..++...++|+..+..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 122366667777777666654
No 417
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.46 E-value=0.0027 Score=46.47 Aligned_cols=85 Identities=21% Similarity=0.125 Sum_probs=46.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEE--eCCC-hhhhhhhhhhhccCCcEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW--DTAG-QERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~--D~~g-~~~~~~~~~~~~~~~d~~i~ 81 (205)
.++++|+.|+|||||++.+.+... |+.|. +.+++..+.+..- +.+| +.+.-.+...++.+.+++++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~------i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI-----PNGDN------DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-----CCCcE------EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 478999999999999999988542 22221 1122222211111 1443 33444666777777764443
Q ss_pred EEeC----CChhHHHHHHHHHHHHH
Q 028686 82 VYDV----TDESSFNNIRNWIRNIE 102 (205)
Q Consensus 82 v~d~----~~~~s~~~~~~~~~~i~ 102 (205)
|- -|+.+-..+..++..+.
T Consensus 96 --DEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 96 --DEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred --ECCcccCCHHHHHHHHHHHHHHH
Confidence 42 23555555555555543
No 418
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.44 E-value=0.00076 Score=47.31 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=61.0
Q ss_pred EECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC
Q 028686 8 YFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD 87 (205)
Q Consensus 8 v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (205)
.-|.+|+|||++.-.+...-- ....++.-.+..... ....+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~~---~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~- 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADLGL---ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE- 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCCC---CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence 447889999999766643210 001111111111000 0011568999999753 223346788899999998876
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 88 ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
..++..+...++.+.... ...++.+|.|+.+-
T Consensus 78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 445555555555554433 34678899999863
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00013 Score=53.51 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
+||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 420
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.42 E-value=0.00013 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999774
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0017 Score=54.08 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=47.5
Q ss_pred EEEEEEeCCChhhhh----hhhhhhcc---CCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028686 52 IKLQIWDTAGQERFR----TITTAYYR---GAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE 122 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~ 122 (205)
+.+.++||+|..... .....++. ...-.++|++.+-. ..+..+ +..+. .++ --++++|.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~---~~~f~-----~~~~~~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI---YKHFS-----RLPLDGLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH---HHHhC-----CCCCCEEEEecccccc
Confidence 568999999975322 12223333 23355677777653 333332 23332 122 258899999532
Q ss_pred CCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686 123 SKRAVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
..-.+..+....++|+..++.
T Consensus 372 -----~~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 372 -----SLGSILSLLIESGLPISYLTN 392 (424)
T ss_pred -----cccHHHHHHHHHCCCEEEEeC
Confidence 234567777788888766653
No 422
>PRK08118 topology modulation protein; Reviewed
Probab=97.41 E-value=0.00014 Score=52.80 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
||+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999764
No 423
>PRK14530 adenylate kinase; Provisional
Probab=97.41 E-value=0.00014 Score=54.87 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|+..+|+|+|+|||||||+.+.|..
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 6778999999999999999999964
No 424
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.40 E-value=0.00029 Score=58.67 Aligned_cols=85 Identities=19% Similarity=0.134 Sum_probs=46.4
Q ss_pred EEEEEEeCCChhhhhhh----hhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK 124 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~ 124 (205)
..+.++||+|....... ...+ ...+|.+++|+|++..+ +.......+.. .++ .-+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~----~l~i~gvIlTKlD~~a-- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE----AVGIGGIIITKLDGTA-- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh----cCCCCEEEEecccCCC--
Confidence 36899999996543211 1111 23578899999987653 12122222222 233 357789999632
Q ss_pred CccCHHHHHHHHHHhCCcEEEEcC
Q 028686 125 RAVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
..-.+..+....+.|+..++.
T Consensus 247 ---~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 ---KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cccHHHHHHHHHCcCEEEEec
Confidence 123344455566666655543
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=97.39 E-value=0.0014 Score=54.50 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=46.9
Q ss_pred EEEEEEeCCChhhhhh----hhhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT----ITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
+.+.++||+|...... ....+ .-..+.+++|+|....+ ++......+.... -..-+|.||.|... .
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~-r- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDA-R- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcc-c-
Confidence 5689999999542211 11111 11466789999987543 2222233333221 12357789999532 1
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcC
Q 028686 126 AVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
.-.+..+....++|+..++.
T Consensus 256 ---gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 12356666777777666654
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.38 E-value=0.00015 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.||+|+|.+|||||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998654
No 427
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0012 Score=55.15 Aligned_cols=124 Identities=24% Similarity=0.241 Sum_probs=76.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC------------CCCC--cccceeeEEEEEEEEE----------------CCEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS------------FTTS--FITTIGIDFKIRTIEL----------------DGKRIKL 54 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~------------~~~~--~~~t~~~~~~~~~~~~----------------~~~~~~~ 54 (205)
++-++.....|||||...|...- |..+ ...--+++..+..+.. ++..+.+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 56778888999999999885321 1000 0001112222222221 3345788
Q ss_pred EEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686 55 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132 (205)
Q Consensus 55 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 132 (205)
.++|.||+.+|.+...+.++-.|+++.|+|..+.--...-..+.+.+. ..+..+++.||.|-.--+.+...++.
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~----ERIkPvlv~NK~DRAlLELq~~~EeL 174 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA----ERIKPVLVMNKMDRALLELQLSQEEL 174 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH----hhccceEEeehhhHHHHhhcCCHHHH
Confidence 999999999999999999999999999999876422211111223333 23556788999994322445555554
No 428
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.30 E-value=0.00019 Score=50.32 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
|+++|+||||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999753
No 429
>PRK08233 hypothetical protein; Provisional
Probab=97.28 E-value=0.00028 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=23.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
|..+-|+|.|.+|||||||.++|...
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhh
Confidence 67788999999999999999999764
No 430
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0045 Score=50.54 Aligned_cols=86 Identities=9% Similarity=0.074 Sum_probs=45.9
Q ss_pred EEEEEEeCCChhhhhh----hhhhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT----ITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
+.+.++||+|...... ....+.. ..+..++|.+... ...++...++.+. .--+--+|++|.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~----~l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLA----EIPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcC----cCCCCEEEEEcccCCC---
Confidence 5789999999743221 1122222 3455566766533 2233332222221 1123367799999532
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcC
Q 028686 126 AVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
..-.+..++...+.|+..++.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 234456667777877666653
No 431
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.23 E-value=0.00052 Score=53.79 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=35.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC------CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
..++.|+|.||+|||||+|.+...... ....|....... ..+.+..+. .+.+.||||.
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCC-ceEEecCCCc
Confidence 367999999999999999998665321 122232222221 113443333 3789999995
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.23 E-value=0.0055 Score=43.21 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 36899999999999999998864
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.23 E-value=0.0028 Score=54.03 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
+++.|++||||||.++.|+..
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 466799999999999999765
No 434
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.21 E-value=0.00037 Score=42.68 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999765
No 435
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.19 E-value=0.00027 Score=50.88 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 436
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.003 Score=52.19 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=68.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CC----C------C-----------cccceeeEEEEEE-E-E----ECCEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS-FT----T------S-----------FITTIGIDFKIRT-I-E----LDGKRIKLQ 55 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~-~~----~------~-----------~~~t~~~~~~~~~-~-~----~~~~~~~~~ 55 (205)
.-++++|++||||||++..|...- .. . . +....+..+.... . . +....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 348899999999999999986421 00 0 0 0001111111100 0 0 011235678
Q ss_pred EEeCCChhhhh----hhhhhhcc-----CCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 56 IWDTAGQERFR----TITTAYYR-----GAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 56 i~D~~g~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
++||+|..... ..+..+++ ...-.++|.|++... ...++ ...+.. --+--+|++|.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~---~~~f~~----~~~~glIlTKLDEt~--- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV---LKAYES----LNYRRILLTKLDEAD--- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH---HHHhcC----CCCCEEEEEcccCCC---
Confidence 99999964211 11122222 133577888887643 33332 222211 123357899999532
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcC
Q 028686 126 AVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
..-.+..++...+.|+..++.
T Consensus 374 --~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 --FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred --CccHHHHHHHHHCCCEEEEec
Confidence 223355666677777665553
No 437
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.17 E-value=0.0016 Score=52.36 Aligned_cols=97 Identities=22% Similarity=0.194 Sum_probs=63.7
Q ss_pred eCCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHH
Q 028686 58 DTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA 136 (205)
Q Consensus 58 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~ 136 (205)
+.+|+. ++.......+..+|+++.|+|+.++.+-.. ..+.+.. .+.|.++|+||.||.+ ..+..+=.+.+.
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v-~~k~~i~vlNK~DL~~--~~~~~~W~~~~~ 87 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV-KEKPKLLVLNKADLAP--KEVTKKWKKYFK 87 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH-ccCCcEEEEehhhcCC--HHHHHHHHHHHH
Confidence 446654 566777888899999999999999876443 3333333 2355699999999964 222223333444
Q ss_pred HHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 137 DEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 137 ~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
.+.+...+.+++..+.+...+...+.
T Consensus 88 ~~~~~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 88 KEEGIKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred hcCCCccEEEEeecccCccchHHHHH
Confidence 44466678888888877666664333
No 438
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.15 E-value=0.0073 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+|.|.-|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 466799999999999999864
No 439
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00046 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
|+++|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998764
No 440
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.14 E-value=0.0079 Score=49.21 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=76.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC--C-CCcccceeeEEEEEE---------------EEE------------CCEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF--T-TSFITTIGIDFKIRT---------------IEL------------DGKRIKL 54 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~--~-~~~~~t~~~~~~~~~---------------~~~------------~~~~~~~ 54 (205)
-|+++|+.||||||-+..|...-. . ......+..|.|..- +.+ .-..+.+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 478999999999999988854322 0 111111111222110 000 0123568
Q ss_pred EEEeCCChhhhhhh----hhhhccCC--cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCCCCCcc
Q 028686 55 QIWDTAGQERFRTI----TTAYYRGA--MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDESKRAV 127 (205)
Q Consensus 55 ~i~D~~g~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~nK~Dl~~~~~~~ 127 (205)
.++||.|...++.. ...++..+ .-..+|++++.. .+++...++.+.. +|+ -++++|.|-..
T Consensus 285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----~~i~~~I~TKlDET~----- 352 (407)
T COG1419 285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----FPIDGLIFTKLDETT----- 352 (407)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----CCcceeEEEcccccC-----
Confidence 99999997654332 23333322 234456677653 2444333344322 333 46789999532
Q ss_pred CHHHHHHHHHHhCCcEEEEc--CCCCCCHHHH-HHHHHHHHHHHhc
Q 028686 128 PTSKGQALADEYGIKFFETS--AKTNLNVEQV-FFSIARDIKQRLA 170 (205)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~~-~~~i~~~~~~~~~ 170 (205)
..-.+-.+..+.+.|+..++ ..=.++|... -+++++.+.....
T Consensus 353 s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence 23444555555565544443 2222333322 2345555554433
No 441
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.14 E-value=0.0015 Score=47.57 Aligned_cols=44 Identities=30% Similarity=0.181 Sum_probs=27.7
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 77 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
|++++|+|+.++.+-.+ ..+.+.+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 68999999987533211 12223321 1123589999999999953
No 442
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0034 Score=55.57 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=50.8
Q ss_pred EEEEEEeCCChhhhh----hhhhhh--ccCCcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFR----TITTAY--YRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
..+.|+||+|..... .....+ ....+-.++|.|.+. .+.+.++...|..+ ... -+--+|++|.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~---~~~-~i~glIlTKLDEt~-- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHG---AGE-DVDGCIITKLDEAT-- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhc---ccC-CCCEEEEeccCCCC--
Confidence 458999999944221 111111 123456788888875 34444443322221 100 13357799999532
Q ss_pred CccCHHHHHHHHHHhCCcEEEEcCCCCCCH-HHH
Q 028686 125 RAVPTSKGQALADEYGIKFFETSAKTNLNV-EQV 157 (205)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi-~~~ 157 (205)
..-.+..+....++|+..++ +|++| +++
T Consensus 338 ---~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 338 ---HLGPALDTVIRHRLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred ---CccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence 23445566667777766664 34555 443
No 443
>PRK03839 putative kinase; Provisional
Probab=97.13 E-value=0.00041 Score=50.81 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
+|+|+|.|||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 444
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.12 E-value=0.00046 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..+||+|+|+|||||||+...|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998653
No 445
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.12 E-value=0.0023 Score=48.43 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=16.7
Q ss_pred ceEEEEECCCCCcHHHHHHHH
Q 028686 3 FLLRIYFERGGVGKSCLLLRF 23 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l 23 (205)
.+--+|+|+|||||||..+-.
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred CcceEEEcCCCCCccchhhhH
Confidence 345689999999999987543
No 446
>PRK06217 hypothetical protein; Validated
Probab=97.10 E-value=0.00049 Score=50.58 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.09 E-value=0.00061 Score=40.63 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+|.|+.|+||||++.++...
T Consensus 26 tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987543
No 448
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.003 Score=53.23 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=46.7
Q ss_pred EEEEEEeCCChhhhhh---hhhhhccC---CcEEEEEEeCCC-hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT---ITTAYYRG---AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~---~~~~~~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
..+.++||+|...... .....+.. ..-.++|+|.+. ...+.++. ..+ . ....--+|+||.|-..
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~---~~f---~-~~~~~g~IlTKlDet~-- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVV---QAY---R-GPGLAGCILTKLDEAA-- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHH---HHh---c-cCCCCEEEEeCCCCcc--
Confidence 3578999999543221 11112221 122577888765 33333222 222 1 1123457789999532
Q ss_pred CccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 125 RAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
..-.+..+....++++..++ +|++|
T Consensus 406 ---~~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 406 ---SLGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred ---cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence 23455666777787766664 34555
No 449
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.00053 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998753
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.07 E-value=0.00061 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
|+++|++|||||||+|.+-+-.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6899999999999999987654
No 451
>PRK14531 adenylate kinase; Provisional
Probab=97.05 E-value=0.00059 Score=50.19 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
+.+|+++|+|||||||+...|...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998654
No 452
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.05 E-value=0.044 Score=39.64 Aligned_cols=137 Identities=10% Similarity=0.084 Sum_probs=89.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
-.|+++|..+.++..|...+...+- ++. ..+.. ..-.-.| .+.... =...|.++|++
T Consensus 16 atiLLVg~e~~~~~~LA~a~l~~~~----------~~~-l~Vh~------a~sLPLp--~e~~~l----RprIDlIVFvi 72 (176)
T PF11111_consen 16 ATILLVGTEEALLQQLAEAMLEEDK----------EFK-LKVHL------AKSLPLP--SENNNL----RPRIDLIVFVI 72 (176)
T ss_pred eEEEEecccHHHHHHHHHHHHhhcc----------cee-EEEEE------eccCCCc--ccccCC----CceeEEEEEEE
Confidence 4689999999999999999986321 011 11111 0001111 111111 22479999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
|....-|+..++.-+..+......+ .++++++-.... +...+...++.+++..++.+++.+.-.+.++...+=+.+++
T Consensus 73 nl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~ 150 (176)
T PF11111_consen 73 NLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR 150 (176)
T ss_pred ecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence 9999999998887777775544444 345555444432 24678899999999999999999888777666555555554
Q ss_pred HH
Q 028686 164 DI 165 (205)
Q Consensus 164 ~~ 165 (205)
.+
T Consensus 151 ~l 152 (176)
T PF11111_consen 151 ML 152 (176)
T ss_pred HH
Confidence 44
No 453
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.03 E-value=0.0062 Score=44.44 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=59.6
Q ss_pred EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCH
Q 028686 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT 129 (205)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~ 129 (205)
..+.+.++|+|+.... .....+..+|.+++++..+. .+...+..+.+.+... +.|+.+|+|+.|... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~ 160 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIA 160 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chH
Confidence 3567899999965422 23345678999999988774 3666676666666543 467899999998632 234
Q ss_pred HHHHHHHHHhCCcEE
Q 028686 130 SKGQALADEYGIKFF 144 (205)
Q Consensus 130 ~~~~~~~~~~~~~~~ 144 (205)
+++.++.++.+++++
T Consensus 161 ~~~~~~~~~~~~~vl 175 (179)
T cd03110 161 EEIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHHcCCCeE
Confidence 667778888887765
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.02 E-value=0.00068 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSF 28 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~ 28 (205)
-.++++|++|+|||+++..++..-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999988654
No 455
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.98 E-value=0.00085 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|++|||||||++.+-+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 37899999999999999987755
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.98 E-value=0.00065 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 47899999999999999998754
No 457
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.97 E-value=0.02 Score=41.42 Aligned_cols=84 Identities=13% Similarity=0.013 Sum_probs=51.5
Q ss_pred EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132 (205)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 132 (205)
.+.++|+|+..... ....+..+|.+|++.+.+. .++..+..+++.+.... .....+++|+.+-.. ....+..
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~ 135 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV 135 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence 58999999764332 3344678999999987764 35666666666665532 234678899988532 1222223
Q ss_pred HHHHHHhCCcEE
Q 028686 133 QALADEYGIKFF 144 (205)
Q Consensus 133 ~~~~~~~~~~~~ 144 (205)
..+.+.++.+++
T Consensus 136 ~~~~~~~~~~v~ 147 (179)
T cd02036 136 EDIEEILGVPLL 147 (179)
T ss_pred HHHHHHhCCCEE
Confidence 455555666644
No 458
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.97 E-value=0.0062 Score=47.99 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=57.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh--------------------
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-------------------- 63 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------------------- 63 (205)
-+++++|++|.|||+++++|........ .+ .. ..+.+.....|...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~-d~-~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQS-DE-DA------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCC-CC-CC------------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 3579999999999999999998653221 11 00 11233444444311
Q ss_pred ----hhhhhhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcC-CCCcEEEEEeC
Q 028686 64 ----RFRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHAS-DNVNKVLVGNK 117 (205)
Q Consensus 64 ----~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK 117 (205)
.........++...+=++++|--. .-+....+..++.++...+ -++|++.+|+.
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 112223345666778888887432 1123334445555554433 56999999876
No 459
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.95 E-value=0.00028 Score=57.07 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=48.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh--hhhhhhccCCcEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--TITTAYYRGAMGI 79 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~d~~ 79 (205)
..|.|.++|.|++||||+||.|-..++-.. .|..|.+-....+.+- -.+.++|+||-.-.. +-....+ -++
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---kGv 378 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---KGV 378 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---hce
Confidence 468899999999999999999987764321 2222311111111111 246788999964211 2222232 245
Q ss_pred EEEEeCCChhHH
Q 028686 80 LLVYDVTDESSF 91 (205)
Q Consensus 80 i~v~d~~~~~s~ 91 (205)
+=|=.+.+++.+
T Consensus 379 VRVenv~~pe~y 390 (572)
T KOG2423|consen 379 VRVENVKNPEDY 390 (572)
T ss_pred eeeeecCCHHHH
Confidence 566666776543
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.93 E-value=0.00069 Score=46.31 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 461
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.92 E-value=0.0054 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
|+|.|++||||||+++.++..-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 462
>PRK14532 adenylate kinase; Provisional
Probab=96.92 E-value=0.00084 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
++|+++|+|||||||+..+|...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999753
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.91 E-value=0.0008 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998775
No 464
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.90 E-value=0.005 Score=42.78 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998763
No 465
>PHA00729 NTP-binding motif containing protein
Probab=96.90 E-value=0.0011 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
...+|++.|.||+|||+|..++...
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998764
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.89 E-value=0.00091 Score=46.83 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.89 E-value=0.00092 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999996653
No 468
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.88 E-value=0.0011 Score=49.72 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=22.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..+.|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999764
No 469
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.88 E-value=0.0011 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..-+.|+|.+|||||||+++++..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 445799999999999999999865
No 470
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.88 E-value=0.00097 Score=46.87 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|.|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999775
No 471
>PRK13949 shikimate kinase; Provisional
Probab=96.87 E-value=0.001 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
+|+|+|++||||||+...|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988754
No 472
>PTZ00301 uridine kinase; Provisional
Probab=96.87 E-value=0.0012 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=21.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|..+-|+|.|.+|||||||.+.|..
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHH
Confidence 6678899999999999999987743
No 473
>PRK00625 shikimate kinase; Provisional
Probab=96.86 E-value=0.001 Score=48.48 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
++|+++|.+||||||+.+.|...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998653
No 474
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.85 E-value=0.00099 Score=44.41 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 028686 5 LRIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~ 24 (205)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47899999999999999985
No 475
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.85 E-value=0.0088 Score=46.70 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=43.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCc-ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
.|+|.|++|+||||+++.++..-..... .-++. .+.++.+.+. ..+.+..-.| ..+.......++..--+|++-
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiE---dp~E~~~~~~-~q~~v~~~~~-~~~~~~l~~~lR~~PD~i~vg 156 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVE---DPVEYQIPGI-NQVQVNEKAG-LTFARGLRAILRQDPDIIMVG 156 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC---CCceecCCCc-eEEEeCCcCC-cCHHHHHHHHhccCCCEEEec
Confidence 3789999999999999998765422110 01110 0111222221 1222211112 234444555555433466777
Q ss_pred eCCChhHHHH
Q 028686 84 DVTDESSFNN 93 (205)
Q Consensus 84 d~~~~~s~~~ 93 (205)
.+.+++++..
T Consensus 157 EiR~~e~a~~ 166 (264)
T cd01129 157 EIRDAETAEI 166 (264)
T ss_pred cCCCHHHHHH
Confidence 7888776543
No 476
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.84 E-value=0.02 Score=45.28 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 028686 5 LRIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~ 24 (205)
.|+|.|.+||||||+++.|.
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47899999999999999994
No 477
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.0012 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998864
No 478
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.83 E-value=0.0011 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|++|+|||||+|.+.+=.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 57999999999999999987743
No 479
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0012 Score=50.54 Aligned_cols=142 Identities=18% Similarity=0.287 Sum_probs=77.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC--EEEEEEEEeCCChhhhhhhhhhhccC----Cc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM 77 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~----~d 77 (205)
.-|++.|.. |+|++|++.....- ....|+...+|..-. ...+ ..--..+|+.+|......+..-.+.. .-
T Consensus 46 ~~I~~~Gn~--~~tt~I~~~FdR~e-~~~~ptlaLEYtygR-R~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~ 121 (363)
T KOG3929|consen 46 FFIGSKGNG--GKTTIILRCFDRDE-PPKPPTLALEYTYGR-RAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF 121 (363)
T ss_pred eEEEEecCC--ceeEeehhhcCccc-CCCCCceeeeeehhh-hccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence 456777744 45899998877653 233455555554322 2222 22346899999876655554433332 22
Q ss_pred EEEEEEeCCChhHH-HHHHHHHHHH--------------------------Hhh----------c-CCCCcEEEEEeCCC
Q 028686 78 GILLVYDVTDESSF-NNIRNWIRNI--------------------------EQH----------A-SDNVNKVLVGNKAD 119 (205)
Q Consensus 78 ~~i~v~d~~~~~s~-~~~~~~~~~i--------------------------~~~----------~-~~~~piiiv~nK~D 119 (205)
.+|++.|+++++.| ..+...++.+ ... . .--+|++||+.|+|
T Consensus 122 slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKYD 201 (363)
T KOG3929|consen 122 SLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKYD 201 (363)
T ss_pred hheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccchh
Confidence 57888999987643 1111111111 110 0 01379999999999
Q ss_pred CCCCCCccCHHH----HHHHHHHhCCcEEEEcCC
Q 028686 120 MDESKRAVPTSK----GQALADEYGIKFFETSAK 149 (205)
Q Consensus 120 l~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~ 149 (205)
.-..-......+ .+.++..+|..+...|++
T Consensus 202 vFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSsk 235 (363)
T KOG3929|consen 202 VFQDFESEKRKHICKTLRFVAHYYGAALLMFSSK 235 (363)
T ss_pred hhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 743222222222 344556677766667776
No 480
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.80 E-value=0.0012 Score=46.15 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999998764
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.80 E-value=0.0011 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999875
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.79 E-value=0.0011 Score=49.25 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999774
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.79 E-value=0.0011 Score=48.63 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+++|.+||||||+.+.|..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999973
No 484
>PRK02496 adk adenylate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+|+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
No 485
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.78 E-value=0.0073 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.+|+|.|.+|||||||++.|+..-
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998753
No 486
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.77 E-value=0.0013 Score=50.36 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+|++|+|.+|||||+|+..|+..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 489999999999999999998765
No 487
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.76 E-value=0.0011 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 488
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.76 E-value=0.0012 Score=49.48 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.-|+|.|++|||||||++.|.+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 489
>PRK10646 ADP-binding protein; Provisional
Probab=96.74 E-value=0.013 Score=41.67 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
|++-|+-|+|||||++.++..
T Consensus 31 i~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 31 IYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999765
No 490
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0011 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...+|+|.|-||+|||||..++..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 467899999999999999999974
No 491
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.74 E-value=0.01 Score=49.53 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=38.5
Q ss_pred EEeCCC-hhhhhhhhhhhccCCcEEEEEEe-CCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686 56 IWDTAG-QERFRTITTAYYRGAMGILLVYD-VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 56 i~D~~g-~~~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 119 (205)
++|.+- ..+.-.+....+++++.+|+ | .+.-=+..++..++..+.+....+..+|++-.|.+
T Consensus 138 V~dLsVG~qQRVEIlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 138 VADLSVGEQQRVEILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred eecCCcchhHHHHHHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 445442 22334666777888885443 3 22222445666677777777767888888888865
No 492
>PRK06547 hypothetical protein; Provisional
Probab=96.73 E-value=0.0018 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
....|+|.|.+||||||+.+.|...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567888899999999999999764
No 493
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.73 E-value=0.0016 Score=47.43 Aligned_cols=24 Identities=17% Similarity=0.056 Sum_probs=21.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.-+|+++|++|+||||+...|...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999999764
No 494
>PRK04040 adenylate kinase; Provisional
Probab=96.73 E-value=0.0016 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
...|+|.|.||+||||+++.|...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357899999999999999998664
No 495
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.73 E-value=0.0082 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.+|+|.|+.|||||||++.|+..-
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHccc
Confidence 579999999999999999998754
No 496
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.0013 Score=48.54 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
++++|++|||||||+|.+.+-
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcC
Confidence 689999999999999988764
No 497
>PRK04195 replication factor C large subunit; Provisional
Probab=96.73 E-value=0.026 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|.|++|+||||+++.|.+.-
T Consensus 41 ~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998753
No 498
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0057 Score=49.91 Aligned_cols=130 Identities=21% Similarity=0.247 Sum_probs=73.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV 85 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 85 (205)
|.++|..|||||||+.-|.+-- .|..| .+.++|..+ |--..++|+.+....+.+-+.+==.+..
T Consensus 352 vFliG~NGsGKST~~~LLtGL~-----~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLY-----QPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred EEEECCCCCcHHHHHHHHhccc-----CCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 5789999999999999888743 33333 223444222 3334467888887777544433223444
Q ss_pred CChhHHHHHHHHHHHHHhhcC----------------------------CCCcEEEEE-eCCCCCCCCCccCHHHHHHHH
Q 028686 86 TDESSFNNIRNWIRNIEQHAS----------------------------DNVNKVLVG-NKADMDESKRAVPTSKGQALA 136 (205)
Q Consensus 86 ~~~~s~~~~~~~~~~i~~~~~----------------------------~~~piiiv~-nK~Dl~~~~~~~~~~~~~~~~ 136 (205)
....+...+..|++.+.-... .+.||+|.- .-.|..+.-+.+-+.......
T Consensus 416 e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~L 495 (546)
T COG4615 416 EGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLL 495 (546)
T ss_pred ccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHH
Confidence 444566778888888742211 145555553 335543333333344444455
Q ss_pred HHhCCcEEEEcCCCC
Q 028686 137 DEYGIKFFETSAKTN 151 (205)
Q Consensus 137 ~~~~~~~~~~Sa~~~ 151 (205)
++.|-.+|-+|-.+.
T Consensus 496 K~qGKTI~aIsHDd~ 510 (546)
T COG4615 496 KEQGKTIFAISHDDH 510 (546)
T ss_pred HHhCCeEEEEecCch
Confidence 666666666654433
No 499
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.71 E-value=0.0085 Score=42.21 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
|++-|+-|+|||||++.+..+-
T Consensus 28 v~L~GdLGAGKTtf~rgi~~~L 49 (149)
T COG0802 28 VLLSGDLGAGKTTLVRGIAKGL 49 (149)
T ss_pred EEEEcCCcCChHHHHHHHHHHc
Confidence 6778999999999999997654
No 500
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.70 E-value=0.0016 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.++|+|+.|+|||||++.+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 579999999999999998863
Done!