Query 028686
Match_columns 205
No_of_seqs 126 out of 1716
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 01:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 9.6E-46 3.3E-50 278.5 19.6 197 1-203 11-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 2.5E-38 8.7E-43 236.2 22.7 169 3-172 8-176 (206)
3 1vg8_A RAS-related protein RAB 100.0 2.5E-37 8.5E-42 230.7 18.9 169 2-172 7-180 (207)
4 2bov_A RAla, RAS-related prote 100.0 1.8E-36 6.3E-41 225.7 23.0 171 1-173 12-183 (206)
5 3cpj_B GTP-binding protein YPT 100.0 1.3E-36 4.5E-41 229.8 19.3 170 3-173 13-182 (223)
6 2fu5_C RAS-related protein RAB 100.0 3.4E-36 1.2E-40 220.4 18.8 170 3-173 8-177 (183)
7 2ew1_A RAS-related protein RAB 100.0 2.2E-35 7.7E-40 219.9 22.9 168 3-171 26-193 (201)
8 3tkl_A RAS-related protein RAB 100.0 5.6E-35 1.9E-39 216.0 23.9 169 3-172 16-184 (196)
9 2bme_A RAB4A, RAS-related prot 100.0 5.9E-35 2E-39 214.2 23.1 170 3-173 10-179 (186)
10 2hup_A RAS-related protein RAB 100.0 2.3E-35 7.7E-40 219.7 21.1 168 2-170 28-196 (201)
11 1ek0_A Protein (GTP-binding pr 100.0 4.3E-35 1.5E-39 211.5 21.5 165 1-165 1-167 (170)
12 2a5j_A RAS-related protein RAB 100.0 4.7E-35 1.6E-39 216.1 22.0 169 2-171 20-188 (191)
13 1zbd_A Rabphilin-3A; G protein 100.0 1.1E-34 3.7E-39 215.9 23.9 170 3-173 8-177 (203)
14 2efe_B Small GTP-binding prote 100.0 5.2E-35 1.8E-39 213.5 21.2 167 2-169 11-177 (181)
15 2gf9_A RAS-related protein RAB 100.0 1.1E-34 3.6E-39 213.8 22.9 166 3-169 22-187 (189)
16 1r2q_A RAS-related protein RAB 100.0 8.2E-35 2.8E-39 210.0 21.2 163 2-165 5-167 (170)
17 4dsu_A GTPase KRAS, isoform 2B 100.0 1.5E-34 5E-39 212.4 22.6 168 2-172 3-171 (189)
18 1z08_A RAS-related protein RAB 100.0 4.8E-35 1.7E-39 211.5 19.7 164 2-166 5-168 (170)
19 1z0f_A RAB14, member RAS oncog 100.0 9.2E-35 3.1E-39 211.6 21.3 164 3-167 15-178 (179)
20 3tw8_B RAS-related protein RAB 100.0 1.4E-34 4.9E-39 210.9 22.1 168 3-172 9-176 (181)
21 1g16_A RAS-related protein SEC 100.0 6.8E-35 2.3E-39 210.6 20.0 166 2-169 2-167 (170)
22 3t5g_A GTP-binding protein RHE 100.0 7.2E-35 2.5E-39 213.0 20.3 168 2-171 5-173 (181)
23 2y8e_A RAB-protein 6, GH09086P 100.0 7.2E-35 2.5E-39 212.1 20.1 166 1-167 12-177 (179)
24 2oil_A CATX-8, RAS-related pro 100.0 1.9E-34 6.5E-39 213.0 22.5 167 3-170 25-191 (193)
25 2o52_A RAS-related protein RAB 100.0 8.4E-35 2.9E-39 216.4 20.6 169 3-172 25-193 (200)
26 2g6b_A RAS-related protein RAB 100.0 2.1E-34 7.1E-39 210.1 22.2 167 2-169 9-176 (180)
27 3kkq_A RAS-related protein M-R 100.0 3E-34 1E-38 210.0 23.0 164 2-167 17-182 (183)
28 1z0j_A RAB-22, RAS-related pro 100.0 2.4E-34 8.2E-39 207.7 21.9 163 2-165 5-167 (170)
29 2fn4_A P23, RAS-related protei 100.0 2.6E-34 9E-39 209.5 22.1 168 2-171 8-176 (181)
30 2gf0_A GTP-binding protein DI- 100.0 1.2E-34 4.3E-39 214.6 20.6 163 3-168 8-172 (199)
31 3dz8_A RAS-related protein RAB 100.0 1.9E-35 6.4E-40 218.2 15.7 167 3-170 23-189 (191)
32 3q3j_B RHO-related GTP-binding 100.0 1E-34 3.5E-39 218.2 19.9 168 1-170 25-206 (214)
33 3ihw_A Centg3; RAS, centaurin, 100.0 3.4E-34 1.2E-38 210.6 22.1 163 1-170 18-183 (184)
34 3bc1_A RAS-related protein RAB 100.0 4.5E-34 1.5E-38 210.5 22.5 169 3-172 11-190 (195)
35 1z06_A RAS-related protein RAB 100.0 2.4E-34 8.4E-39 211.8 20.6 166 1-167 18-188 (189)
36 1z2a_A RAS-related protein RAB 100.0 2E-34 7E-39 207.7 19.8 164 2-167 4-167 (168)
37 3cph_A RAS-related protein SEC 100.0 4.9E-34 1.7E-38 213.7 22.5 167 3-171 20-186 (213)
38 2il1_A RAB12; G-protein, GDP, 100.0 1.7E-34 5.7E-39 213.4 19.7 166 2-168 25-191 (192)
39 1c1y_A RAS-related protein RAP 100.0 3.2E-34 1.1E-38 206.5 20.5 163 1-165 1-165 (167)
40 2fg5_A RAB-22B, RAS-related pr 100.0 1.7E-34 5.8E-39 213.3 19.3 165 2-167 22-186 (192)
41 2nzj_A GTP-binding protein REM 100.0 5E-34 1.7E-38 207.1 21.5 169 1-171 2-173 (175)
42 2hxs_A RAB-26, RAS-related pro 100.0 6.1E-35 2.1E-39 212.6 16.7 167 1-168 4-174 (178)
43 1kao_A RAP2A; GTP-binding prot 100.0 3.4E-34 1.2E-38 206.0 20.4 165 1-167 1-166 (167)
44 1wms_A RAB-9, RAB9, RAS-relate 100.0 8.3E-34 2.8E-38 206.4 22.5 163 3-167 7-174 (177)
45 3c5c_A RAS-like protein 12; GD 100.0 2.3E-34 7.7E-39 211.9 19.6 163 2-167 20-186 (187)
46 1u8z_A RAS-related protein RAL 100.0 5.5E-34 1.9E-38 205.1 21.2 165 1-167 2-167 (168)
47 2p5s_A RAS and EF-hand domain 100.0 1.2E-34 4E-39 215.4 18.2 165 2-166 27-196 (199)
48 3reg_A RHO-like small GTPase; 100.0 7.4E-34 2.5E-38 210.1 22.3 166 2-169 22-190 (194)
49 3q85_A GTP-binding protein REM 100.0 3E-34 1E-38 207.2 19.7 165 3-168 2-168 (169)
50 1ky3_A GTP-binding protein YPT 100.0 2.4E-34 8.3E-39 209.9 18.9 169 2-170 7-181 (182)
51 2iwr_A Centaurin gamma 1; ANK 100.0 6.6E-34 2.3E-38 207.3 21.0 164 1-171 5-173 (178)
52 1x3s_A RAS-related protein RAB 100.0 9.7E-34 3.3E-38 209.1 22.0 167 2-170 14-181 (195)
53 2j0v_A RAC-like GTP-binding pr 100.0 9.4E-35 3.2E-39 217.7 16.7 168 2-171 8-184 (212)
54 3cbq_A GTP-binding protein REM 100.0 3.7E-34 1.3E-38 212.3 19.2 166 2-168 22-189 (195)
55 2a9k_A RAS-related protein RAL 100.0 1.5E-33 5.3E-38 206.4 22.2 169 1-171 16-185 (187)
56 2q3h_A RAS homolog gene family 100.0 1.3E-33 4.4E-38 209.8 21.8 168 2-171 19-199 (201)
57 3oes_A GTPase rhebl1; small GT 100.0 2.4E-34 8.1E-39 214.0 17.8 168 2-171 23-191 (201)
58 2f7s_A C25KG, RAS-related prot 100.0 4E-34 1.4E-38 215.0 18.8 168 3-171 25-203 (217)
59 2yc2_C IFT27, small RAB-relate 100.0 1.8E-34 6.2E-39 215.0 15.4 170 2-171 19-196 (208)
60 2atv_A RERG, RAS-like estrogen 100.0 3.2E-33 1.1E-37 207.0 21.6 166 2-170 27-194 (196)
61 3clv_A RAB5 protein, putative; 100.0 6.5E-33 2.2E-37 205.7 23.1 163 3-169 7-206 (208)
62 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.4E-33 4.8E-38 206.6 19.2 165 1-167 3-180 (186)
63 3q72_A GTP-binding protein RAD 100.0 2E-33 7E-38 202.3 19.7 163 3-168 2-165 (166)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 1.3E-33 4.6E-38 207.1 19.0 164 2-167 6-183 (184)
65 2ce2_X GTPase HRAS; signaling 100.0 8.6E-33 3E-37 198.3 22.1 164 1-167 1-165 (166)
66 2atx_A Small GTP binding prote 100.0 3.6E-33 1.2E-37 206.3 20.6 162 3-166 18-192 (194)
67 3con_A GTPase NRAS; structural 100.0 1.3E-32 4.3E-37 202.6 23.4 167 1-170 19-186 (190)
68 2g3y_A GTP-binding protein GEM 100.0 4.2E-33 1.4E-37 208.9 21.1 165 3-169 37-205 (211)
69 1gwn_A RHO-related GTP-binding 100.0 2.7E-33 9.2E-38 209.2 19.5 164 2-167 27-204 (205)
70 2j1l_A RHO-related GTP-binding 100.0 4.7E-33 1.6E-37 209.1 19.6 166 2-169 33-211 (214)
71 2fv8_A H6, RHO-related GTP-bin 100.0 1.2E-32 4.1E-37 205.8 20.1 166 1-168 23-201 (207)
72 2gco_A H9, RHO-related GTP-bin 100.0 1.6E-32 5.5E-37 204.2 20.6 163 2-166 24-199 (201)
73 2erx_A GTP-binding protein DI- 100.0 9.5E-33 3.3E-37 199.5 17.7 163 2-166 2-166 (172)
74 4djt_A GTP-binding nuclear pro 100.0 8.2E-33 2.8E-37 208.0 17.3 170 2-172 10-180 (218)
75 2cjw_A GTP-binding protein GEM 100.0 7.2E-32 2.5E-36 199.4 21.0 166 2-169 5-174 (192)
76 3bwd_D RAC-like GTP-binding pr 100.0 2.5E-33 8.7E-38 204.7 13.0 163 2-166 7-180 (182)
77 3t1o_A Gliding protein MGLA; G 100.0 5.1E-33 1.7E-37 205.4 14.2 164 3-171 14-196 (198)
78 4gzl_A RAS-related C3 botulinu 100.0 3.3E-32 1.1E-36 203.0 18.1 162 2-165 29-203 (204)
79 3l0i_B RAS-related protein RAB 100.0 7.1E-35 2.4E-39 216.5 2.1 164 3-167 33-196 (199)
80 3gj0_A GTP-binding nuclear pro 100.0 8E-33 2.7E-37 208.6 13.0 165 2-170 14-178 (221)
81 2f9l_A RAB11B, member RAS onco 100.0 9.3E-31 3.2E-35 194.3 22.9 169 3-172 5-173 (199)
82 4bas_A ADP-ribosylation factor 100.0 4E-31 1.4E-35 195.7 19.2 163 2-171 16-193 (199)
83 2h57_A ADP-ribosylation factor 100.0 9.6E-31 3.3E-35 192.7 18.0 159 2-167 20-187 (190)
84 1ksh_A ARF-like protein 2; sma 100.0 1.8E-30 6.2E-35 190.4 19.4 159 2-168 17-181 (186)
85 1zd9_A ADP-ribosylation factor 100.0 9.3E-31 3.2E-35 192.6 17.9 160 2-168 21-186 (188)
86 1upt_A ARL1, ADP-ribosylation 100.0 4E-31 1.4E-35 191.0 15.3 157 3-167 7-169 (171)
87 1r8s_A ADP-ribosylation factor 100.0 1E-31 3.5E-36 193.0 12.0 156 4-167 1-162 (164)
88 1f6b_A SAR1; gtpases, N-termin 100.0 3.4E-31 1.2E-35 196.7 15.1 155 2-164 24-196 (198)
89 1m2o_B GTP-binding protein SAR 100.0 1E-30 3.5E-35 192.9 17.5 154 3-164 23-189 (190)
90 1zj6_A ADP-ribosylation factor 100.0 1.1E-30 3.8E-35 191.9 14.9 160 2-169 15-180 (187)
91 2b6h_A ADP-ribosylation factor 100.0 1.7E-31 5.9E-36 197.3 10.2 157 2-166 28-190 (192)
92 1fzq_A ADP-ribosylation factor 100.0 1.9E-30 6.4E-35 190.0 15.4 159 2-168 15-179 (181)
93 1oix_A RAS-related protein RAB 100.0 2.5E-29 8.4E-34 185.6 20.8 162 3-165 29-190 (191)
94 2h17_A ADP-ribosylation factor 100.0 1.5E-30 5E-35 190.4 13.9 155 2-164 20-180 (181)
95 2wkq_A NPH1-1, RAS-related C3 100.0 2E-29 6.9E-34 200.5 21.4 163 3-167 155-330 (332)
96 2zej_A Dardarin, leucine-rich 100.0 3.9E-31 1.3E-35 194.0 10.4 164 3-168 2-179 (184)
97 1moz_A ARL1, ADP-ribosylation 100.0 1.9E-30 6.6E-35 189.6 14.0 160 2-169 17-182 (183)
98 2x77_A ADP-ribosylation factor 100.0 8.3E-31 2.8E-35 192.8 10.2 159 2-168 21-185 (189)
99 3th5_A RAS-related C3 botulinu 99.9 1.6E-32 5.6E-37 204.4 0.0 162 2-165 29-203 (204)
100 3llu_A RAS-related GTP-binding 100.0 7.4E-30 2.5E-34 189.0 10.7 159 2-165 19-195 (196)
101 2wji_A Ferrous iron transport 100.0 4.6E-29 1.6E-33 179.9 13.8 155 1-165 1-163 (165)
102 2fh5_B SR-beta, signal recogni 100.0 3.2E-29 1.1E-33 187.8 12.9 160 2-164 6-213 (214)
103 3c5h_A Glucocorticoid receptor 100.0 6E-30 2E-34 197.1 6.1 162 2-166 18-254 (255)
104 2lkc_A Translation initiation 100.0 1.9E-28 6.6E-33 178.1 13.4 157 2-171 7-175 (178)
105 3o47_A ADP-ribosylation factor 100.0 3.6E-29 1.2E-33 199.3 8.2 158 2-167 164-327 (329)
106 2qu8_A Putative nucleolar GTP- 100.0 1.8E-27 6.3E-32 180.2 17.1 165 2-171 28-209 (228)
107 2cxx_A Probable GTP-binding pr 100.0 4.1E-28 1.4E-32 178.1 11.5 157 4-170 2-187 (190)
108 3r7w_A Gtpase1, GTP-binding pr 100.0 9.9E-28 3.4E-32 189.3 14.3 161 2-166 2-180 (307)
109 3lvq_E ARF-GAP with SH3 domain 100.0 3.7E-27 1.3E-31 197.3 18.0 161 2-170 321-487 (497)
110 2wjg_A FEOB, ferrous iron tran 100.0 7.2E-28 2.5E-32 176.7 12.0 159 1-169 5-171 (188)
111 3r7w_B Gtpase2, GTP-binding pr 99.9 6.3E-29 2.2E-33 195.4 4.9 159 5-170 1-177 (331)
112 2gj8_A MNME, tRNA modification 99.9 2.1E-27 7.3E-32 172.4 10.7 154 3-167 4-166 (172)
113 2dyk_A GTP-binding protein; GT 99.9 5.4E-27 1.9E-31 167.6 11.7 150 4-165 2-160 (161)
114 1svi_A GTP-binding protein YSX 99.9 1.5E-26 5.1E-31 170.6 13.1 155 3-165 23-193 (195)
115 3a1s_A Iron(II) transport prot 99.9 2.9E-26 9.9E-31 176.7 14.9 156 1-166 3-166 (258)
116 3dpu_A RAB family protein; roc 99.9 2.2E-27 7.7E-32 200.2 8.1 163 2-169 40-210 (535)
117 3i8s_A Ferrous iron transport 99.9 1.1E-26 3.8E-31 180.6 9.1 156 1-166 1-168 (274)
118 3pqc_A Probable GTP-binding pr 99.9 1.2E-25 4E-30 165.5 13.5 155 3-167 23-194 (195)
119 3iby_A Ferrous iron transport 99.9 2.3E-26 7.8E-31 177.0 9.8 151 4-164 2-164 (256)
120 3k53_A Ferrous iron transport 99.9 2.4E-25 8.1E-30 172.9 13.4 159 1-168 1-167 (271)
121 3b1v_A Ferrous iron uptake tra 99.9 8.3E-26 2.9E-30 175.2 10.8 153 2-165 2-162 (272)
122 3iev_A GTP-binding protein ERA 99.9 8.7E-25 3E-29 172.5 16.4 159 4-167 11-182 (308)
123 2hjg_A GTP-binding protein ENG 99.9 1.9E-24 6.5E-29 178.1 13.2 161 3-170 175-352 (436)
124 4dhe_A Probable GTP-binding pr 99.9 8E-25 2.7E-29 164.7 9.8 163 3-169 29-213 (223)
125 1nrj_B SR-beta, signal recogni 99.9 1.8E-25 6.1E-30 167.8 6.1 141 3-153 12-170 (218)
126 3gee_A MNME, tRNA modification 99.9 5.6E-24 1.9E-28 176.3 15.4 156 3-166 233-397 (476)
127 2e87_A Hypothetical protein PH 99.9 5.2E-23 1.8E-27 165.5 17.5 162 3-170 167-339 (357)
128 4dcu_A GTP-binding protein ENG 99.9 8.5E-24 2.9E-28 175.2 12.7 162 3-171 195-373 (456)
129 1mky_A Probable GTP-binding pr 99.9 2.2E-23 7.4E-28 172.0 14.0 178 4-192 2-194 (439)
130 1wf3_A GTP-binding protein; GT 99.9 3.3E-23 1.1E-27 162.9 12.8 154 3-166 7-172 (301)
131 1lnz_A SPO0B-associated GTP-bi 99.9 2.8E-24 9.7E-29 171.3 6.8 157 4-168 159-331 (342)
132 1xzp_A Probable tRNA modificat 99.9 2.2E-23 7.6E-28 172.9 12.2 152 4-167 244-405 (482)
133 1wb1_A Translation elongation 99.9 8E-23 2.7E-27 170.1 14.2 157 1-166 17-188 (482)
134 2hjg_A GTP-binding protein ENG 99.9 1.2E-23 4.2E-28 173.3 8.9 180 1-192 1-189 (436)
135 3qq5_A Small GTP-binding prote 99.9 6.2E-24 2.1E-28 173.5 5.6 156 3-168 34-197 (423)
136 2qtf_A Protein HFLX, GTP-bindi 99.9 5.9E-22 2E-26 159.3 16.9 160 6-168 182-355 (364)
137 1cip_A Protein (guanine nucleo 99.9 2.1E-22 7.1E-27 161.1 14.0 133 34-170 179-347 (353)
138 3j2k_7 ERF3, eukaryotic polype 99.9 3.1E-22 1.1E-26 164.9 14.5 156 2-159 16-217 (439)
139 3sjy_A Translation initiation 99.9 1.3E-21 4.5E-26 159.7 17.6 157 2-166 7-191 (403)
140 3ohm_A Guanine nucleotide-bind 99.9 4.8E-22 1.6E-26 157.0 14.3 134 33-170 152-321 (327)
141 1s0u_A EIF-2-gamma, translatio 99.9 3.1E-21 1.1E-25 157.7 18.7 158 3-166 8-197 (408)
142 3geh_A MNME, tRNA modification 99.9 1E-22 3.5E-27 168.2 9.2 153 3-168 224-385 (462)
143 3cb4_D GTP-binding protein LEP 99.9 1.1E-21 3.7E-26 166.3 15.2 157 3-166 4-181 (599)
144 2xtp_A GTPase IMAP family memb 99.9 6.4E-22 2.2E-26 152.5 12.0 163 2-169 21-210 (260)
145 3lxx_A GTPase IMAP family memb 99.9 7.1E-21 2.4E-25 144.9 17.6 162 2-168 28-215 (239)
146 1mky_A Probable GTP-binding pr 99.9 4.3E-21 1.5E-25 158.3 16.1 160 3-169 180-357 (439)
147 3izy_P Translation initiation 99.9 3.9E-24 1.3E-28 178.9 -2.2 160 2-166 3-167 (537)
148 2ywe_A GTP-binding protein LEP 99.9 2.7E-21 9.3E-26 163.7 15.1 157 3-166 6-183 (600)
149 3lxw_A GTPase IMAP family memb 99.9 9.9E-22 3.4E-26 150.5 11.1 165 2-168 20-209 (247)
150 3t5d_A Septin-7; GTP-binding p 99.9 2.1E-22 7.3E-27 156.4 6.8 160 2-165 7-202 (274)
151 1kk1_A EIF2gamma; initiation o 99.9 7.3E-21 2.5E-25 155.6 16.1 158 3-166 10-199 (410)
152 3p26_A Elongation factor 1 alp 99.9 2.1E-21 7.3E-26 161.8 12.4 151 2-157 32-228 (483)
153 1jny_A EF-1-alpha, elongation 99.9 2.2E-22 7.6E-27 165.7 6.4 155 2-159 5-205 (435)
154 4dcu_A GTP-binding protein ENG 99.9 3.1E-22 1.1E-26 165.8 7.0 179 1-191 21-208 (456)
155 2ged_A SR-beta, signal recogni 99.9 7.9E-22 2.7E-26 145.0 8.4 111 3-122 48-170 (193)
156 2qag_A Septin-2, protein NEDD5 99.9 2.4E-22 8.2E-27 161.7 5.6 163 3-171 37-237 (361)
157 1ega_A Protein (GTP-binding pr 99.9 1.1E-20 3.8E-25 148.6 13.8 156 3-166 8-174 (301)
158 1zun_B Sulfate adenylate trans 99.8 3E-21 1E-25 159.0 10.5 152 3-160 24-217 (434)
159 4fid_A G protein alpha subunit 99.8 2.6E-20 8.9E-25 147.6 15.3 130 34-167 147-328 (340)
160 1g7s_A Translation initiation 99.8 7.8E-21 2.7E-25 161.2 12.4 161 2-169 4-220 (594)
161 1r5b_A Eukaryotic peptide chai 99.8 4.2E-22 1.4E-26 165.3 4.3 154 3-158 43-243 (467)
162 2c78_A Elongation factor TU-A; 99.8 1.5E-21 5.3E-26 159.4 6.8 148 2-153 10-180 (405)
163 1d2e_A Elongation factor TU (E 99.8 6.2E-21 2.1E-25 155.4 10.1 160 2-165 2-193 (397)
164 1f60_A Elongation factor EEF1A 99.8 3.2E-22 1.1E-26 165.7 2.2 151 2-157 6-202 (458)
165 1zo1_I IF2, translation initia 99.8 6.5E-23 2.2E-27 170.3 -2.8 153 2-163 3-163 (501)
166 2elf_A Protein translation elo 99.8 7.5E-21 2.6E-25 153.3 9.1 147 5-168 23-181 (370)
167 3tr5_A RF-3, peptide chain rel 99.8 1.6E-20 5.4E-25 157.5 11.1 114 3-122 13-148 (528)
168 3izq_1 HBS1P, elongation facto 99.8 1.1E-20 3.6E-25 161.1 8.2 152 3-157 167-362 (611)
169 1pui_A ENGB, probable GTP-bind 99.8 7.5E-20 2.6E-24 136.2 9.9 156 3-167 26-199 (210)
170 3avx_A Elongation factor TS, e 99.8 5.5E-20 1.9E-24 163.3 10.0 160 2-165 295-484 (1289)
171 3def_A T7I23.11 protein; chlor 99.8 5.8E-19 2E-23 136.2 13.0 119 1-122 34-165 (262)
172 1zcb_A G alpha I/13; GTP-bindi 99.8 4.4E-19 1.5E-23 142.3 12.6 147 20-170 166-356 (362)
173 2aka_B Dynamin-1; fusion prote 99.8 2.7E-20 9.1E-25 146.0 5.4 159 3-166 26-252 (299)
174 3mca_A HBS1, elongation factor 99.8 3.3E-21 1.1E-25 163.9 -0.4 144 3-155 177-371 (592)
175 2xtz_A Guanine nucleotide-bind 99.8 3.5E-19 1.2E-23 142.5 10.3 121 50-170 181-348 (354)
176 1azs_C GS-alpha; complex (lyas 99.8 1.7E-18 5.9E-23 140.1 12.9 133 34-170 203-388 (402)
177 1udx_A The GTP-binding protein 99.8 1.2E-18 4.3E-23 141.9 11.6 159 5-170 159-328 (416)
178 1u0l_A Probable GTPase ENGC; p 99.8 9E-20 3.1E-24 143.4 4.4 133 18-162 32-168 (301)
179 2dy1_A Elongation factor G; tr 99.8 2.6E-18 8.8E-23 148.0 12.5 112 4-121 10-139 (665)
180 2qnr_A Septin-2, protein NEDD5 99.8 9.3E-20 3.2E-24 143.2 3.2 163 3-170 18-217 (301)
181 3t34_A Dynamin-related protein 99.8 9.1E-19 3.1E-23 140.9 7.7 109 53-164 137-258 (360)
182 2j69_A Bacterial dynamin-like 99.8 3.1E-18 1.1E-22 148.1 11.2 161 3-167 69-325 (695)
183 2h5e_A Peptide chain release f 99.7 1.1E-17 3.9E-22 140.3 13.2 114 3-122 13-148 (529)
184 1dar_A EF-G, elongation factor 99.7 1.7E-17 5.9E-22 143.4 14.0 112 3-122 12-143 (691)
185 2rdo_7 EF-G, elongation factor 99.7 5E-17 1.7E-21 140.7 16.4 116 3-122 10-148 (704)
186 1h65_A Chloroplast outer envel 99.7 1.8E-17 6.1E-22 128.3 12.0 118 2-122 38-168 (270)
187 2qag_C Septin-7; cell cycle, c 99.7 4.6E-18 1.6E-22 138.6 8.0 157 3-164 31-224 (418)
188 2xex_A Elongation factor G; GT 99.7 2.6E-17 9E-22 142.3 13.0 114 3-122 10-141 (693)
189 1wxq_A GTP-binding protein; st 99.7 3.9E-18 1.3E-22 138.5 6.9 85 4-88 1-114 (397)
190 1jwy_B Dynamin A GTPase domain 99.7 1.8E-17 6.3E-22 130.8 10.1 112 52-167 131-262 (315)
191 2hf9_A Probable hydrogenase ni 99.7 6.9E-19 2.3E-23 132.5 -3.0 153 3-167 38-224 (226)
192 2wsm_A Hydrogenase expression/ 99.7 6E-17 2E-21 121.5 6.5 155 3-169 30-216 (221)
193 2x2e_A Dynamin-1; nitration, h 99.7 4.3E-18 1.5E-22 136.7 -0.6 157 3-163 31-254 (353)
194 1jal_A YCHF protein; nucleotid 99.7 1.6E-15 5.5E-20 121.2 14.0 145 3-150 2-240 (363)
195 1n0u_A EF-2, elongation factor 99.7 4E-16 1.4E-20 137.4 10.8 125 3-131 19-173 (842)
196 3p32_A Probable GTPase RV1496/ 99.6 3.6E-16 1.2E-20 125.5 5.5 105 52-167 172-284 (355)
197 3vqt_A RF-3, peptide chain rel 99.6 3.9E-15 1.3E-19 125.5 11.9 115 3-123 31-167 (548)
198 2dby_A GTP-binding protein; GD 99.6 4.1E-15 1.4E-19 119.4 9.2 150 4-159 2-254 (368)
199 2qpt_A EH domain-containing pr 99.6 5.2E-15 1.8E-19 124.9 8.1 117 3-122 65-232 (550)
200 1yrb_A ATP(GTP)binding protein 99.5 7.6E-14 2.6E-18 107.1 12.5 110 52-167 109-257 (262)
201 2www_A Methylmalonic aciduria 99.5 6.5E-14 2.2E-18 112.1 11.8 103 52-167 167-279 (349)
202 4a9a_A Ribosome-interacting GT 99.5 7.1E-13 2.4E-17 106.5 15.5 152 4-159 73-240 (376)
203 2p67_A LAO/AO transport system 99.5 1.7E-14 5.7E-19 115.2 5.1 104 52-167 149-261 (341)
204 3j25_A Tetracycline resistance 99.5 7.1E-15 2.4E-19 126.1 1.6 117 3-123 2-134 (638)
205 4fn5_A EF-G 1, elongation fact 99.5 4.2E-13 1.4E-17 116.5 12.5 115 4-122 14-151 (709)
206 2yv5_A YJEQ protein; hydrolase 99.5 1.5E-13 5.3E-18 107.8 8.3 96 62-161 66-163 (302)
207 3zvr_A Dynamin-1; hydrolase, D 99.4 5E-13 1.7E-17 115.6 8.0 155 3-164 51-275 (772)
208 3l82_B F-box only protein 4; T 99.4 2.4E-13 8.2E-18 99.8 4.3 106 59-168 109-224 (227)
209 2qm8_A GTPase/ATPase; G protei 99.3 5.7E-12 1.9E-16 100.3 10.5 103 52-166 148-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 8.7E-13 3E-17 106.4 5.2 89 3-91 22-132 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 3.2E-11 1.1E-15 97.5 12.2 85 3-87 20-127 (392)
212 3l2o_B F-box only protein 4; s 99.3 4.6E-12 1.6E-16 97.3 6.3 107 59-168 194-309 (312)
213 3h2y_A GTPase family protein; 99.1 4.1E-10 1.4E-14 90.6 9.7 96 61-164 55-157 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 6.9E-10 2.3E-14 89.3 7.9 97 61-165 57-160 (369)
215 1puj_A YLQF, conserved hypothe 98.9 2.5E-09 8.6E-14 83.0 7.5 102 56-168 3-107 (282)
216 2qag_B Septin-6, protein NEDD5 98.9 2.5E-09 8.5E-14 87.1 7.7 59 4-62 43-105 (427)
217 3ec1_A YQEH GTPase; atnos1, at 98.8 2.1E-10 7.3E-15 92.3 -1.1 139 4-153 163-317 (369)
218 3h2y_A GTPase family protein; 98.8 1.4E-10 4.7E-15 93.4 -2.5 135 4-147 161-310 (368)
219 2j37_W Signal recognition part 98.8 1.4E-09 4.8E-14 90.5 3.4 149 4-164 102-310 (504)
220 3sop_A Neuronal-specific septi 98.7 7.8E-08 2.7E-12 74.1 9.6 25 3-27 2-26 (270)
221 1tq4_A IIGP1, interferon-induc 98.6 2.7E-07 9.1E-12 75.1 11.4 157 4-169 70-255 (413)
222 3cnl_A YLQF, putative uncharac 98.4 7.9E-08 2.7E-12 73.7 2.3 57 4-64 100-156 (262)
223 1puj_A YLQF, conserved hypothe 98.4 2.9E-07 1E-11 71.3 4.9 56 3-63 120-176 (282)
224 3cnl_A YLQF, putative uncharac 98.3 2.6E-07 8.8E-12 70.9 3.5 93 59-163 4-97 (262)
225 3dm5_A SRP54, signal recogniti 98.3 7.4E-07 2.5E-11 72.9 4.8 91 52-155 183-279 (443)
226 2v3c_C SRP54, signal recogniti 98.2 2.3E-06 8E-11 70.0 6.7 84 52-147 181-272 (432)
227 1t9h_A YLOQ, probable GTPase E 98.1 7.9E-07 2.7E-11 69.6 2.2 92 66-160 77-170 (307)
228 2rcn_A Probable GTPase ENGC; Y 98.1 1.1E-05 3.9E-10 64.3 7.7 82 72-160 127-212 (358)
229 1bif_A 6-phosphofructo-2-kinas 98.1 2.9E-07 9.8E-12 76.4 -1.7 108 3-115 39-156 (469)
230 3kl4_A SRP54, signal recogniti 98.0 1.7E-06 5.7E-11 70.8 2.5 90 52-154 180-277 (433)
231 1f5n_A Interferon-induced guan 98.0 3E-06 1E-10 71.8 3.7 59 3-63 38-102 (592)
232 3szr_A Interferon-induced GTP- 98.0 2.2E-05 7.5E-10 67.1 8.9 23 5-27 47-69 (608)
233 1j8m_F SRP54, signal recogniti 97.9 2.5E-05 8.6E-10 60.8 7.4 91 52-156 181-280 (297)
234 3q5d_A Atlastin-1; G protein, 97.6 0.00037 1.3E-08 57.2 9.2 59 5-63 69-151 (447)
235 1ye8_A Protein THEP1, hypothet 97.4 8.9E-05 3E-09 53.3 3.3 23 4-26 1-23 (178)
236 1qhx_A CPT, protein (chloramph 97.3 0.00018 6.3E-09 51.1 3.6 26 1-26 1-26 (178)
237 1kgd_A CASK, peripheral plasma 97.3 0.00016 5.3E-09 51.9 3.1 22 5-26 7-28 (180)
238 1tev_A UMP-CMP kinase; ploop, 97.2 0.00022 7.6E-09 51.3 3.5 25 1-25 1-25 (196)
239 1lvg_A Guanylate kinase, GMP k 97.2 0.00019 6.6E-09 52.3 3.1 22 5-26 6-27 (198)
240 1kht_A Adenylate kinase; phosp 97.1 0.00027 9.3E-09 50.7 3.3 25 1-25 1-25 (192)
241 1ly1_A Polynucleotide kinase; 97.1 0.00031 1.1E-08 49.9 3.6 23 3-25 2-24 (181)
242 3a00_A Guanylate kinase, GMP k 97.1 0.00026 9E-09 51.0 3.1 21 6-26 4-24 (186)
243 3tr0_A Guanylate kinase, GMP k 97.1 0.00026 9E-09 51.5 3.1 22 5-26 9-30 (205)
244 1zp6_A Hypothetical protein AT 97.1 0.00024 8.3E-09 51.1 2.8 22 5-26 11-32 (191)
245 2plr_A DTMP kinase, probable t 97.1 0.00038 1.3E-08 50.8 3.7 25 1-25 2-26 (213)
246 1znw_A Guanylate kinase, GMP k 97.0 0.00034 1.2E-08 51.3 3.1 22 6-27 23-44 (207)
247 1s96_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 51.8 3.1 23 5-27 18-40 (219)
248 1z6g_A Guanylate kinase; struc 97.0 0.00036 1.2E-08 51.7 3.1 23 5-27 25-47 (218)
249 4gp7_A Metallophosphoesterase; 97.0 0.00029 9.9E-09 50.1 2.4 19 6-24 12-30 (171)
250 1cke_A CK, MSSA, protein (cyti 97.0 0.00041 1.4E-08 51.3 3.3 22 4-25 6-27 (227)
251 3c8u_A Fructokinase; YP_612366 97.0 0.00038 1.3E-08 51.0 3.1 23 4-26 23-45 (208)
252 1kag_A SKI, shikimate kinase I 97.0 0.00044 1.5E-08 48.9 3.1 23 4-26 5-27 (173)
253 3tau_A Guanylate kinase, GMP k 97.0 0.00044 1.5E-08 50.7 3.1 23 5-27 10-32 (208)
254 3fb4_A Adenylate kinase; psych 97.0 0.0005 1.7E-08 50.5 3.3 22 4-25 1-22 (216)
255 3ney_A 55 kDa erythrocyte memb 96.9 0.00058 2E-08 49.8 3.6 23 4-26 20-42 (197)
256 1htw_A HI0065; nucleotide-bind 96.9 0.0005 1.7E-08 48.3 3.1 23 5-27 35-57 (158)
257 3lw7_A Adenylate kinase relate 96.9 0.0005 1.7E-08 48.4 3.1 20 4-23 2-21 (179)
258 3dl0_A Adenylate kinase; phosp 96.9 0.00053 1.8E-08 50.4 3.3 22 4-25 1-22 (216)
259 1ex7_A Guanylate kinase; subst 96.9 0.0005 1.7E-08 49.7 3.1 21 6-26 4-24 (186)
260 2qor_A Guanylate kinase; phosp 96.9 0.0005 1.7E-08 50.2 3.1 23 4-26 13-35 (204)
261 1jjv_A Dephospho-COA kinase; P 96.9 0.00066 2.3E-08 49.5 3.8 22 4-25 3-24 (206)
262 3cm0_A Adenylate kinase; ATP-b 96.9 0.00063 2.2E-08 48.6 3.6 23 3-25 4-26 (186)
263 3kb2_A SPBC2 prophage-derived 96.9 0.00057 2E-08 48.1 3.3 22 5-26 3-24 (173)
264 2bdt_A BH3686; alpha-beta prot 96.9 0.00057 2E-08 49.1 3.1 21 5-25 4-24 (189)
265 2j41_A Guanylate kinase; GMP, 96.9 0.0007 2.4E-08 49.2 3.6 24 4-27 7-30 (207)
266 3tif_A Uncharacterized ABC tra 96.9 0.00054 1.8E-08 51.4 2.9 22 6-27 34-55 (235)
267 3sr0_A Adenylate kinase; phosp 96.9 0.00067 2.3E-08 49.8 3.3 22 4-25 1-22 (206)
268 4eun_A Thermoresistant glucoki 96.9 0.00062 2.1E-08 49.6 3.1 21 5-25 31-51 (200)
269 2if2_A Dephospho-COA kinase; a 96.9 0.00064 2.2E-08 49.5 3.2 22 4-25 2-23 (204)
270 2rhm_A Putative kinase; P-loop 96.8 0.00076 2.6E-08 48.4 3.4 23 3-25 5-27 (193)
271 1knq_A Gluconate kinase; ALFA/ 96.8 0.00089 3.1E-08 47.4 3.7 22 4-25 9-30 (175)
272 1y63_A LMAJ004144AAA protein; 96.8 0.00083 2.8E-08 48.2 3.6 24 3-26 10-33 (184)
273 2jaq_A Deoxyguanosine kinase; 96.8 0.00075 2.6E-08 48.9 3.3 21 5-25 2-22 (205)
274 2bbw_A Adenylate kinase 4, AK4 96.8 0.00077 2.6E-08 50.7 3.3 21 4-24 28-48 (246)
275 3ec2_A DNA replication protein 96.8 0.00065 2.2E-08 48.5 2.7 22 5-26 40-61 (180)
276 3co5_A Putative two-component 96.8 0.0024 8.2E-08 43.8 5.5 23 4-26 28-50 (143)
277 3vaa_A Shikimate kinase, SK; s 96.8 0.00086 2.9E-08 48.7 3.3 21 5-25 27-47 (199)
278 2onk_A Molybdate/tungstate ABC 96.8 0.00076 2.6E-08 50.8 3.1 23 5-27 26-48 (240)
279 2cdn_A Adenylate kinase; phosp 96.8 0.00096 3.3E-08 48.4 3.6 24 2-25 19-42 (201)
280 2i3b_A HCR-ntpase, human cance 96.8 0.00074 2.5E-08 48.9 2.9 22 5-26 3-24 (189)
281 3asz_A Uridine kinase; cytidin 96.8 0.0007 2.4E-08 49.5 2.8 23 4-26 7-29 (211)
282 2pcj_A ABC transporter, lipopr 96.8 0.00063 2.2E-08 50.6 2.6 22 6-27 33-54 (224)
283 3t61_A Gluconokinase; PSI-biol 96.8 0.0008 2.7E-08 48.9 3.1 23 4-26 19-41 (202)
284 2rcn_A Probable GTPase ENGC; Y 96.8 0.00071 2.4E-08 53.9 3.0 24 5-28 217-240 (358)
285 1via_A Shikimate kinase; struc 96.8 0.00079 2.7E-08 47.8 2.9 21 5-25 6-26 (175)
286 3trf_A Shikimate kinase, SK; a 96.8 0.00095 3.3E-08 47.7 3.4 23 3-25 5-27 (185)
287 1e4v_A Adenylate kinase; trans 96.7 0.00081 2.8E-08 49.4 3.0 22 4-25 1-22 (214)
288 3iij_A Coilin-interacting nucl 96.7 0.00087 3E-08 47.8 3.1 23 3-25 11-33 (180)
289 1nks_A Adenylate kinase; therm 96.7 0.00099 3.4E-08 47.7 3.3 21 5-25 3-23 (194)
290 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.7E-08 49.9 3.7 24 2-25 28-51 (243)
291 2vli_A Antibiotic resistance p 96.7 0.00067 2.3E-08 48.3 2.4 25 1-25 3-27 (183)
292 2cbz_A Multidrug resistance-as 96.7 0.00081 2.8E-08 50.5 2.9 22 5-26 33-54 (237)
293 1sgw_A Putative ABC transporte 96.7 0.00082 2.8E-08 49.7 2.9 22 6-27 38-59 (214)
294 1b0u_A Histidine permease; ABC 96.7 0.0008 2.7E-08 51.3 2.9 22 6-27 35-56 (262)
295 3uie_A Adenylyl-sulfate kinase 96.7 0.00093 3.2E-08 48.6 3.1 23 4-26 26-48 (200)
296 1np6_A Molybdopterin-guanine d 96.7 0.00096 3.3E-08 47.7 3.1 22 5-26 8-29 (174)
297 3gfo_A Cobalt import ATP-bindi 96.7 0.00083 2.8E-08 51.6 2.9 22 6-27 37-58 (275)
298 1gvn_B Zeta; postsegregational 96.7 0.0011 3.6E-08 51.3 3.5 24 2-25 32-55 (287)
299 2v54_A DTMP kinase, thymidylat 96.7 0.0012 4.1E-08 47.9 3.6 24 3-26 4-27 (204)
300 1g6h_A High-affinity branched- 96.7 0.00089 3.1E-08 50.9 2.9 23 5-27 35-57 (257)
301 2v9p_A Replication protein E1; 96.7 0.0011 3.6E-08 51.8 3.3 22 5-26 128-149 (305)
302 2ff7_A Alpha-hemolysin translo 96.7 0.00093 3.2E-08 50.5 2.9 23 5-27 37-59 (247)
303 3b85_A Phosphate starvation-in 96.7 0.00083 2.8E-08 49.4 2.5 22 5-26 24-45 (208)
304 2eyu_A Twitching motility prot 96.7 0.001 3.5E-08 50.7 3.1 22 5-26 27-48 (261)
305 4g1u_C Hemin import ATP-bindin 96.7 0.0009 3.1E-08 51.2 2.8 23 5-27 39-61 (266)
306 2pt5_A Shikimate kinase, SK; a 96.7 0.0012 4.2E-08 46.3 3.3 21 5-25 2-22 (168)
307 2pze_A Cystic fibrosis transme 96.7 0.00096 3.3E-08 49.8 2.9 23 5-27 36-58 (229)
308 1e6c_A Shikimate kinase; phosp 96.7 0.0012 4.3E-08 46.4 3.4 21 5-25 4-24 (173)
309 1qf9_A UMP/CMP kinase, protein 96.7 0.0013 4.4E-08 47.1 3.5 23 3-25 6-28 (194)
310 1mv5_A LMRA, multidrug resista 96.7 0.0011 3.6E-08 50.0 3.1 23 5-27 30-52 (243)
311 2olj_A Amino acid ABC transpor 96.6 0.00096 3.3E-08 50.9 2.9 23 5-27 52-74 (263)
312 1ji0_A ABC transporter; ATP bi 96.6 0.00098 3.4E-08 50.1 2.9 23 5-27 34-56 (240)
313 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0011 3.7E-08 50.2 3.1 22 5-26 31-52 (250)
314 2yvu_A Probable adenylyl-sulfa 96.6 0.0015 5.1E-08 46.8 3.7 25 2-26 12-36 (186)
315 2c95_A Adenylate kinase 1; tra 96.6 0.0012 4.3E-08 47.4 3.2 23 3-25 9-31 (196)
316 1vpl_A ABC transporter, ATP-bi 96.6 0.001 3.6E-08 50.5 2.9 23 5-27 43-65 (256)
317 2wwf_A Thymidilate kinase, put 96.6 0.0012 3.9E-08 48.3 3.0 23 3-25 10-32 (212)
318 2iyv_A Shikimate kinase, SK; t 96.6 0.0012 4.2E-08 47.1 3.1 21 5-25 4-24 (184)
319 2qi9_C Vitamin B12 import ATP- 96.6 0.0011 3.7E-08 50.2 2.9 23 5-27 28-50 (249)
320 1aky_A Adenylate kinase; ATP:A 96.6 0.0013 4.5E-08 48.5 3.3 23 3-25 4-26 (220)
321 2ghi_A Transport protein; mult 96.6 0.0011 3.7E-08 50.5 2.9 22 5-26 48-69 (260)
322 2zu0_C Probable ATP-dependent 96.6 0.0012 4E-08 50.5 3.1 22 5-26 48-69 (267)
323 2f1r_A Molybdopterin-guanine d 96.6 0.00071 2.4E-08 48.2 1.7 22 5-26 4-25 (171)
324 3aez_A Pantothenate kinase; tr 96.6 0.0011 3.9E-08 51.8 3.1 23 4-26 91-113 (312)
325 2ixe_A Antigen peptide transpo 96.6 0.0011 3.7E-08 50.8 2.9 23 5-27 47-69 (271)
326 2chg_A Replication factor C sm 96.6 0.0043 1.5E-07 45.0 6.0 22 5-26 40-61 (226)
327 3lnc_A Guanylate kinase, GMP k 96.6 0.00075 2.6E-08 50.2 1.9 22 5-26 29-51 (231)
328 2ehv_A Hypothetical protein PH 96.6 0.0012 4.2E-08 49.3 3.0 19 6-24 33-51 (251)
329 1u0l_A Probable GTPase ENGC; p 96.6 0.0014 4.7E-08 51.0 3.4 23 5-27 171-193 (301)
330 1uf9_A TT1252 protein; P-loop, 96.6 0.0015 5.2E-08 47.2 3.5 25 2-26 7-31 (203)
331 4a74_A DNA repair and recombin 96.6 0.0011 3.9E-08 48.8 2.8 21 6-26 28-48 (231)
332 2ihy_A ABC transporter, ATP-bi 96.6 0.0011 3.9E-08 50.9 2.9 23 5-27 49-71 (279)
333 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.9E-08 48.5 3.3 22 4-25 1-22 (223)
334 1nn5_A Similar to deoxythymidy 96.6 0.0015 5E-08 47.8 3.3 23 3-25 9-31 (215)
335 1t9h_A YLOQ, probable GTPase E 96.5 0.00046 1.6E-08 53.9 0.5 23 5-27 175-197 (307)
336 2nq2_C Hypothetical ABC transp 96.5 0.0012 4.2E-08 50.0 2.8 23 5-27 33-55 (253)
337 1lw7_A Transcriptional regulat 96.5 0.0013 4.6E-08 52.5 3.2 23 4-26 171-193 (365)
338 2x8a_A Nuclear valosin-contain 96.5 0.0014 4.8E-08 50.3 3.1 21 6-26 47-67 (274)
339 2kjq_A DNAA-related protein; s 96.5 0.0011 3.8E-08 46.0 2.3 23 5-27 38-60 (149)
340 2yz2_A Putative ABC transporte 96.5 0.0013 4.4E-08 50.3 2.9 23 5-27 35-57 (266)
341 1zd8_A GTP:AMP phosphotransfer 96.5 0.0014 4.9E-08 48.5 3.0 22 4-25 8-29 (227)
342 3r20_A Cytidylate kinase; stru 96.5 0.0017 5.7E-08 48.7 3.3 24 2-25 8-31 (233)
343 2qt1_A Nicotinamide riboside k 96.5 0.0019 6.3E-08 47.1 3.5 23 4-26 22-44 (207)
344 2pbr_A DTMP kinase, thymidylat 96.5 0.0018 6.1E-08 46.4 3.3 21 5-25 2-22 (195)
345 2yv5_A YJEQ protein; hydrolase 96.5 0.0015 5.1E-08 50.9 3.1 22 5-27 167-188 (302)
346 2p5t_B PEZT; postsegregational 96.5 0.0014 4.8E-08 49.6 2.7 24 3-26 32-55 (253)
347 1vht_A Dephospho-COA kinase; s 96.5 0.0021 7.1E-08 47.3 3.6 23 3-25 4-26 (218)
348 3nh6_A ATP-binding cassette SU 96.5 0.0013 4.3E-08 51.4 2.5 22 5-26 82-103 (306)
349 2jeo_A Uridine-cytidine kinase 96.5 0.0017 5.7E-08 48.8 3.1 22 4-25 26-47 (245)
350 2pjz_A Hypothetical protein ST 96.5 0.0017 5.8E-08 49.6 3.1 22 5-26 32-53 (263)
351 1zak_A Adenylate kinase; ATP:A 96.4 0.0015 5E-08 48.3 2.7 22 4-25 6-27 (222)
352 2z0h_A DTMP kinase, thymidylat 96.4 0.002 6.8E-08 46.4 3.3 22 5-26 2-23 (197)
353 1xjc_A MOBB protein homolog; s 96.4 0.0019 6.5E-08 45.9 3.1 22 5-26 6-27 (169)
354 1ixz_A ATP-dependent metallopr 96.4 0.0018 6.1E-08 48.8 3.1 22 5-26 51-72 (254)
355 1jbk_A CLPB protein; beta barr 96.4 0.0021 7.3E-08 45.5 3.3 22 5-26 45-66 (195)
356 3be4_A Adenylate kinase; malar 96.4 0.0018 6.3E-08 47.7 3.0 22 4-25 6-27 (217)
357 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0017 5.6E-08 51.8 2.8 22 6-27 33-54 (359)
358 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.1E-08 46.7 2.8 22 4-25 13-34 (199)
359 2ze6_A Isopentenyl transferase 96.4 0.0019 6.6E-08 48.9 3.1 21 5-25 3-23 (253)
360 1z47_A CYSA, putative ABC-tran 96.4 0.002 6.7E-08 51.4 3.1 22 6-27 44-65 (355)
361 1gtv_A TMK, thymidylate kinase 96.4 0.00092 3.1E-08 48.9 1.1 21 5-25 2-22 (214)
362 1ukz_A Uridylate kinase; trans 96.3 0.0028 9.5E-08 46.0 3.6 22 4-25 16-37 (203)
363 2yyz_A Sugar ABC transporter, 96.3 0.0021 7.1E-08 51.3 3.1 22 6-27 32-53 (359)
364 1ak2_A Adenylate kinase isoenz 96.3 0.0027 9.3E-08 47.3 3.6 22 4-25 17-38 (233)
365 1rj9_A FTSY, signal recognitio 96.3 0.0022 7.5E-08 50.0 3.1 84 53-147 186-281 (304)
366 2it1_A 362AA long hypothetical 96.3 0.0022 7.4E-08 51.2 3.1 22 6-27 32-53 (362)
367 3jvv_A Twitching mobility prot 96.3 0.0024 8.3E-08 50.9 3.3 22 5-26 125-146 (356)
368 3rlf_A Maltose/maltodextrin im 96.3 0.0022 7.6E-08 51.5 3.1 22 6-27 32-53 (381)
369 2bbs_A Cystic fibrosis transme 96.3 0.0019 6.5E-08 50.0 2.6 22 5-26 66-87 (290)
370 4ido_A Atlastin-1; GTPase, GTP 96.3 0.007 2.4E-07 49.6 6.0 58 6-63 70-151 (457)
371 1g29_1 MALK, maltose transport 96.3 0.0023 7.9E-08 51.3 3.1 22 6-27 32-53 (372)
372 3tui_C Methionine import ATP-b 96.3 0.0023 7.9E-08 51.1 3.1 22 6-27 57-78 (366)
373 3umf_A Adenylate kinase; rossm 96.3 0.0025 8.5E-08 47.2 3.1 20 6-25 32-51 (217)
374 1rz3_A Hypothetical protein rb 96.3 0.0022 7.7E-08 46.6 2.8 22 4-25 23-44 (201)
375 1ltq_A Polynucleotide kinase; 96.3 0.0029 1E-07 48.8 3.6 23 3-25 2-24 (301)
376 2pez_A Bifunctional 3'-phospho 96.3 0.0033 1.1E-07 44.7 3.6 22 4-25 6-27 (179)
377 1v43_A Sugar-binding transport 96.3 0.0024 8.1E-08 51.2 3.1 22 6-27 40-61 (372)
378 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0029 9.9E-08 48.0 3.5 22 4-25 5-26 (260)
379 1in4_A RUVB, holliday junction 96.3 0.0024 8.3E-08 50.3 3.1 22 5-26 53-74 (334)
380 3tqc_A Pantothenate kinase; bi 96.3 0.0032 1.1E-07 49.4 3.7 24 3-26 92-115 (321)
381 1sq5_A Pantothenate kinase; P- 96.3 0.0022 7.4E-08 50.0 2.8 23 4-26 81-103 (308)
382 4e22_A Cytidylate kinase; P-lo 96.2 0.0031 1.1E-07 47.7 3.5 21 4-24 28-48 (252)
383 3d31_A Sulfate/molybdate ABC t 96.2 0.002 6.8E-08 51.2 2.5 22 6-27 29-50 (348)
384 1odf_A YGR205W, hypothetical 3 96.2 0.0034 1.2E-07 48.6 3.7 23 3-25 31-53 (290)
385 1zuh_A Shikimate kinase; alpha 96.2 0.0032 1.1E-07 44.2 3.3 21 5-25 9-29 (168)
386 3b9q_A Chloroplast SRP recepto 96.2 0.0026 9E-08 49.5 3.1 21 5-25 102-122 (302)
387 1iy2_A ATP-dependent metallopr 96.2 0.0027 9.1E-08 48.6 3.1 22 5-26 75-96 (278)
388 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0029 9.8E-08 46.6 3.1 21 6-26 26-46 (235)
389 2ewv_A Twitching motility prot 96.2 0.0029 9.9E-08 50.7 3.3 22 5-26 138-159 (372)
390 1uj2_A Uridine-cytidine kinase 96.2 0.0036 1.2E-07 47.2 3.6 23 3-25 22-44 (252)
391 2h92_A Cytidylate kinase; ross 96.2 0.0027 9.3E-08 46.6 2.9 25 1-25 1-25 (219)
392 4dzz_A Plasmid partitioning pr 96.2 0.012 4.2E-07 42.4 6.3 85 52-144 76-162 (206)
393 3ake_A Cytidylate kinase; CMP 96.2 0.0038 1.3E-07 45.2 3.6 24 1-25 1-24 (208)
394 2p65_A Hypothetical protein PF 96.2 0.0026 8.8E-08 45.0 2.6 23 4-26 44-66 (187)
395 3e70_C DPA, signal recognition 96.2 0.0029 1E-07 49.8 3.1 91 53-156 213-309 (328)
396 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0025 8.6E-08 50.2 2.7 23 5-27 173-195 (330)
397 2gza_A Type IV secretion syste 96.1 0.0026 8.9E-08 50.8 2.8 22 5-26 177-198 (361)
398 3uc9_A Increased recombination 96.1 0.008 2.7E-07 44.7 5.1 24 4-27 30-53 (233)
399 3bos_A Putative DNA replicatio 96.1 0.0037 1.3E-07 46.2 3.3 23 4-26 53-75 (242)
400 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0039 1.3E-07 49.8 3.6 21 3-23 33-53 (362)
401 1lv7_A FTSH; alpha/beta domain 96.1 0.0033 1.1E-07 47.4 3.1 23 4-26 46-68 (257)
402 1oxx_K GLCV, glucose, ABC tran 96.1 0.002 6.7E-08 51.3 1.8 22 6-27 34-55 (353)
403 2vp4_A Deoxynucleoside kinase; 96.1 0.0025 8.7E-08 47.4 2.3 23 4-26 21-43 (230)
404 2w58_A DNAI, primosome compone 96.1 0.004 1.4E-07 45.0 3.3 23 4-26 55-77 (202)
405 3nwj_A ATSK2; P loop, shikimat 96.0 0.0035 1.2E-07 47.5 2.9 22 4-25 49-70 (250)
406 3gd7_A Fusion complex of cysti 96.0 0.0032 1.1E-07 50.8 2.8 22 5-26 49-70 (390)
407 4eaq_A DTMP kinase, thymidylat 96.0 0.0052 1.8E-07 45.8 3.8 23 4-26 27-49 (229)
408 1p9r_A General secretion pathw 96.0 0.0036 1.2E-07 51.0 3.1 22 5-26 169-190 (418)
409 1m7g_A Adenylylsulfate kinase; 96.0 0.004 1.4E-07 45.6 3.1 22 4-25 26-47 (211)
410 2cvh_A DNA repair and recombin 96.0 0.0042 1.4E-07 45.4 3.1 21 5-25 22-42 (220)
411 1cr0_A DNA primase/helicase; R 96.0 0.0035 1.2E-07 48.3 2.8 21 6-26 38-58 (296)
412 1nij_A Hypothetical protein YJ 96.0 0.0031 1.1E-07 49.4 2.4 27 1-27 1-28 (318)
413 1n0w_A DNA repair protein RAD5 95.9 0.0044 1.5E-07 46.0 3.1 22 5-26 26-47 (243)
414 2og2_A Putative signal recogni 95.9 0.0042 1.5E-07 49.5 3.1 21 5-25 159-179 (359)
415 2grj_A Dephospho-COA kinase; T 95.9 0.0059 2E-07 44.2 3.5 23 4-26 13-35 (192)
416 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0037 1.2E-07 51.6 2.6 22 5-26 140-161 (460)
417 2oap_1 GSPE-2, type II secreti 95.9 0.004 1.4E-07 52.0 2.8 23 5-27 262-284 (511)
418 2obl_A ESCN; ATPase, hydrolase 95.9 0.0046 1.6E-07 49.1 3.0 23 5-27 73-95 (347)
419 2f6r_A COA synthase, bifunctio 95.9 0.0055 1.9E-07 47.1 3.4 23 3-25 75-97 (281)
420 3gmt_A Adenylate kinase; ssgci 95.9 0.0057 2E-07 45.6 3.3 22 4-25 9-30 (230)
421 2yhs_A FTSY, cell division pro 95.8 0.0048 1.6E-07 51.2 3.1 92 52-156 376-479 (503)
422 3n70_A Transport activator; si 95.8 0.0061 2.1E-07 41.8 3.2 24 4-27 25-48 (145)
423 3h4m_A Proteasome-activating n 95.8 0.0052 1.8E-07 46.9 3.1 23 4-26 52-74 (285)
424 3kta_A Chromosome segregation 95.8 0.0051 1.7E-07 43.7 2.8 20 6-25 29-48 (182)
425 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0054 1.9E-07 46.1 3.1 22 5-26 41-62 (262)
426 3b9p_A CG5977-PA, isoform A; A 95.8 0.0053 1.8E-07 47.2 3.1 23 4-26 55-77 (297)
427 1njg_A DNA polymerase III subu 95.8 0.0056 1.9E-07 45.0 3.1 22 5-26 47-68 (250)
428 1tue_A Replication protein E1; 95.8 0.0046 1.6E-07 45.3 2.3 22 5-26 60-81 (212)
429 1svm_A Large T antigen; AAA+ f 95.7 0.0059 2E-07 49.0 3.1 21 5-25 171-191 (377)
430 3exa_A TRNA delta(2)-isopenten 95.7 0.0081 2.8E-07 46.9 3.7 26 1-26 1-26 (322)
431 3cf0_A Transitional endoplasmi 95.7 0.0061 2.1E-07 47.2 3.0 22 5-26 51-72 (301)
432 3t15_A Ribulose bisphosphate c 95.7 0.0057 1.9E-07 47.3 2.8 23 4-26 37-59 (293)
433 1q3t_A Cytidylate kinase; nucl 95.7 0.0082 2.8E-07 44.7 3.6 23 3-25 16-38 (236)
434 3u61_B DNA polymerase accessor 95.7 0.12 3.9E-06 40.2 10.3 21 6-26 51-71 (324)
435 1l8q_A Chromosomal replication 95.6 0.0064 2.2E-07 47.5 3.0 22 5-26 39-60 (324)
436 2dpy_A FLII, flagellum-specifi 95.6 0.0063 2.2E-07 49.8 3.0 23 5-27 159-181 (438)
437 3crm_A TRNA delta(2)-isopenten 95.6 0.0097 3.3E-07 46.7 3.8 23 4-26 6-28 (323)
438 1nlf_A Regulatory protein REPA 95.5 0.0073 2.5E-07 46.2 2.8 20 6-25 33-52 (279)
439 3euj_A Chromosome partition pr 95.5 0.0077 2.6E-07 49.9 3.1 21 5-25 31-51 (483)
440 4edh_A DTMP kinase, thymidylat 95.5 0.011 3.8E-07 43.5 3.6 25 1-25 4-28 (213)
441 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0085 2.9E-07 50.4 3.3 23 5-27 49-71 (538)
442 3syl_A Protein CBBX; photosynt 95.5 0.0083 2.8E-07 46.3 3.0 21 5-25 69-89 (309)
443 3zvl_A Bifunctional polynucleo 95.4 0.0079 2.7E-07 48.9 3.0 23 4-26 259-281 (416)
444 1d2n_A N-ethylmaleimide-sensit 95.4 0.0097 3.3E-07 45.2 3.3 23 4-26 65-87 (272)
445 4b4t_K 26S protease regulatory 95.4 0.0083 2.8E-07 48.9 3.1 22 5-26 208-229 (428)
446 4b4t_M 26S protease regulatory 95.4 0.0085 2.9E-07 48.9 3.1 23 4-26 216-238 (434)
447 2xtz_A Guanine nucleotide-bind 95.4 0.0099 3.4E-07 47.3 3.3 21 3-23 9-29 (354)
448 1ofh_A ATP-dependent HSL prote 95.4 0.0092 3.1E-07 45.9 3.1 23 4-26 51-73 (310)
449 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.0092 3.2E-07 46.8 3.1 22 5-26 47-68 (322)
450 3b60_A Lipid A export ATP-bind 95.4 0.008 2.7E-07 51.0 2.8 22 5-26 371-392 (582)
451 1f2t_A RAD50 ABC-ATPase; DNA d 95.4 0.011 3.7E-07 40.9 3.0 19 6-24 26-44 (149)
452 4b4t_L 26S protease subunit RP 95.3 0.0094 3.2E-07 48.7 3.1 23 4-26 216-238 (437)
453 3b5x_A Lipid A export ATP-bind 95.3 0.0093 3.2E-07 50.6 3.1 22 5-26 371-392 (582)
454 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.6E-07 43.1 3.0 24 4-27 35-58 (205)
455 3ozx_A RNAse L inhibitor; ATP 95.3 0.0087 3E-07 50.3 2.9 22 6-27 28-49 (538)
456 1c9k_A COBU, adenosylcobinamid 95.3 0.0098 3.4E-07 42.6 2.7 21 6-26 2-22 (180)
457 2qby_A CDC6 homolog 1, cell di 95.3 0.0089 3E-07 47.4 2.8 22 5-26 47-68 (386)
458 2dr3_A UPF0273 protein PH0284; 95.3 0.0095 3.3E-07 44.2 2.7 20 6-25 26-45 (247)
459 1sxj_E Activator 1 40 kDa subu 95.3 0.0084 2.9E-07 47.2 2.6 20 6-25 39-58 (354)
460 3j16_B RLI1P; ribosome recycli 95.3 0.013 4.5E-07 50.0 3.8 23 5-27 105-127 (608)
461 3eie_A Vacuolar protein sortin 95.3 0.012 3.9E-07 46.1 3.3 23 4-26 52-74 (322)
462 4fcw_A Chaperone protein CLPB; 95.2 0.011 3.7E-07 45.6 3.0 22 5-26 49-70 (311)
463 4b4t_J 26S protease regulatory 95.2 0.011 3.7E-07 47.8 3.0 22 5-26 184-205 (405)
464 2qgz_A Helicase loader, putati 95.2 0.012 4.3E-07 45.7 3.3 23 4-26 153-175 (308)
465 1sxj_C Activator 1 40 kDa subu 95.2 0.011 3.7E-07 46.5 3.0 21 6-26 49-69 (340)
466 2px0_A Flagellar biosynthesis 95.2 0.01 3.5E-07 46.0 2.8 85 52-147 183-273 (296)
467 1fnn_A CDC6P, cell division co 95.2 0.011 3.8E-07 47.0 3.1 23 5-27 46-68 (389)
468 2yl4_A ATP-binding cassette SU 95.2 0.0083 2.8E-07 51.1 2.4 22 5-26 372-393 (595)
469 1p5z_B DCK, deoxycytidine kina 95.2 0.0088 3E-07 45.3 2.3 24 3-26 24-47 (263)
470 2ga8_A Hypothetical 39.9 kDa p 95.2 0.015 5E-07 46.2 3.6 22 4-25 25-46 (359)
471 1vma_A Cell division protein F 95.2 0.012 4.1E-07 45.8 3.1 86 52-148 187-284 (306)
472 3lv8_A DTMP kinase, thymidylat 95.2 0.013 4.5E-07 43.8 3.2 25 1-25 25-49 (236)
473 3qf4_B Uncharacterized ABC tra 95.1 0.0092 3.1E-07 50.8 2.6 22 5-26 383-404 (598)
474 2r62_A Cell division protease 95.1 0.0057 1.9E-07 46.3 1.1 22 5-26 46-67 (268)
475 3bk7_A ABC transporter ATP-bin 95.1 0.012 4.2E-07 50.2 3.1 23 5-27 119-141 (607)
476 1sxj_D Activator 1 41 kDa subu 95.1 0.013 4.5E-07 46.0 3.1 21 6-26 61-81 (353)
477 3d3q_A TRNA delta(2)-isopenten 95.1 0.017 6E-07 45.5 3.7 23 4-26 8-30 (340)
478 3ozx_A RNAse L inhibitor; ATP 95.1 0.012 4E-07 49.6 2.9 23 5-27 296-318 (538)
479 1pzn_A RAD51, DNA repair and r 95.1 0.012 4.1E-07 46.7 2.8 21 6-26 134-154 (349)
480 1yqt_A RNAse L inhibitor; ATP- 95.0 0.015 5E-07 49.0 3.3 23 5-27 314-336 (538)
481 2qp9_X Vacuolar protein sortin 95.0 0.014 4.9E-07 46.3 3.1 22 5-26 86-107 (355)
482 1a7j_A Phosphoribulokinase; tr 95.0 0.0088 3E-07 46.2 1.8 23 3-25 5-27 (290)
483 2v1u_A Cell division control p 95.0 0.012 4.1E-07 46.7 2.7 22 5-26 46-67 (387)
484 3uk6_A RUVB-like 2; hexameric 95.0 0.013 4.4E-07 46.4 2.8 22 5-26 72-93 (368)
485 4a82_A Cystic fibrosis transme 95.0 0.0083 2.8E-07 50.9 1.8 22 5-26 369-390 (578)
486 3qf7_A RAD50; ABC-ATPase, ATPa 95.0 0.014 4.9E-07 46.6 3.0 19 6-24 26-44 (365)
487 3bk7_A ABC transporter ATP-bin 95.0 0.014 4.7E-07 49.9 3.1 23 5-27 384-406 (607)
488 2ocp_A DGK, deoxyguanosine kin 95.0 0.017 5.8E-07 43.1 3.3 23 4-26 3-25 (241)
489 3pxg_A Negative regulator of g 94.9 0.014 4.8E-07 48.2 3.1 23 4-26 202-224 (468)
490 3v9p_A DTMP kinase, thymidylat 94.9 0.015 5.1E-07 43.3 2.9 22 4-25 26-47 (227)
491 4b4t_I 26S protease regulatory 94.9 0.015 5.1E-07 47.4 3.1 22 5-26 218-239 (437)
492 3te6_A Regulatory protein SIR3 94.9 0.013 4.4E-07 45.9 2.7 23 4-26 46-68 (318)
493 2z4s_A Chromosomal replication 94.9 0.015 5E-07 47.7 3.0 22 5-26 132-153 (440)
494 3qf4_A ABC transporter, ATP-bi 94.9 0.011 3.6E-07 50.4 2.2 22 5-26 371-392 (587)
495 3cwq_A Para family chromosome 94.9 0.15 5.2E-06 37.0 8.2 85 52-144 68-153 (209)
496 3pfi_A Holliday junction ATP-d 94.8 0.016 5.6E-07 45.3 3.1 22 5-26 57-78 (338)
497 3d8b_A Fidgetin-like protein 1 94.8 0.017 5.7E-07 45.9 3.1 23 4-26 118-140 (357)
498 3j16_B RLI1P; ribosome recycli 94.8 0.016 5.4E-07 49.5 3.1 22 6-27 381-402 (608)
499 2r44_A Uncharacterized protein 94.8 0.013 4.6E-07 45.7 2.5 22 5-26 48-69 (331)
500 2bjv_A PSP operon transcriptio 94.8 0.019 6.3E-07 43.4 3.2 24 4-27 30-53 (265)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=9.6e-46 Score=278.45 Aligned_cols=197 Identities=35% Similarity=0.622 Sum_probs=146.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+|+|++|||||||+++|+.+.+...+.||++.++..+.+.+++..+.+.||||+|+++|..++..+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|||+++++||+.+..|+..+.....+++|++|||||+|+.+ .+.+..++++.++++++++|+|+||++|.||+++|+.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 999999999999999999999988878899999999999965 5678999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCC-CCCccccccCCCCCCCCCCCCCCCCCcC
Q 028686 161 IARDIKQRLADTDSR-SEPSTIKINQPDQAGGVGQAAQKSACCG 203 (205)
Q Consensus 161 i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 203 (205)
|++.+.......... .....+++.++ ..+..++++|||
T Consensus 170 i~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~C~C 208 (216)
T 4dkx_A 170 VAAALPGMESTQDRSREDMIDIKLEKP-----QEQPVSEGGCSC 208 (216)
T ss_dssp HHHHC---------------------------------------
T ss_pred HHHHHHhhhcccccccccccccccCCC-----CCCCCCCCCCce
Confidence 999887654433222 11222222222 223455678888
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.5e-38 Score=236.17 Aligned_cols=169 Identities=53% Similarity=0.933 Sum_probs=155.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv 87 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 87 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence 48999999999999999999999999888889999888888889999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 88 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887767899999999999965 355778889999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
+.+.+.....
T Consensus 167 ~~i~~~~~~~ 176 (206)
T 2bcg_Y 167 RQIKESMSQQ 176 (206)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHHHHhhc
Confidence 9998765533
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.5e-37 Score=230.66 Aligned_cols=169 Identities=38% Similarity=0.673 Sum_probs=151.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 35899999999999999999999999888888999989988888888888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~ 156 (205)
|||+++++++..+..|+..+..... .+.|+++|+||+|+. ...+..+++..++. ..+++++++||++|.|+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ 164 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 9999999999999999998876653 468999999999996 34567788888887 6678999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 028686 157 VFFSIARDIKQRLADT 172 (205)
Q Consensus 157 ~~~~i~~~~~~~~~~~ 172 (205)
+|++|.+.+.+.....
T Consensus 165 l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 165 AFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999998776543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=225.66 Aligned_cols=171 Identities=34% Similarity=0.605 Sum_probs=151.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..++|+|+|++|||||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 3468999999999999999999999998888888887554 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||++++++|..+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999987653 5799999999999965 355778899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccC
Q 028686 160 SIARDIKQRLADTD 173 (205)
Q Consensus 160 ~i~~~~~~~~~~~~ 173 (205)
+|.+.+.++.....
T Consensus 170 ~l~~~i~~~~~~~~ 183 (206)
T 2bov_A 170 DLMREIRARKMEDS 183 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHcccccc
Confidence 99999987655443
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=229.81 Aligned_cols=170 Identities=45% Similarity=0.770 Sum_probs=144.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 48999999999999999999999998888888888888888888999889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+......++|++||+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus 93 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 93 YDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp EC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887666799999999999965 355778889999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 028686 163 RDIKQRLADTD 173 (205)
Q Consensus 163 ~~~~~~~~~~~ 173 (205)
+.+.++.....
T Consensus 172 ~~i~~~~~~~~ 182 (223)
T 3cpj_B 172 NTIYQKVSKHQ 182 (223)
T ss_dssp HHHTTCC----
T ss_pred HHHHHHhhhcc
Confidence 99977655443
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.4e-36 Score=220.39 Aligned_cols=170 Identities=65% Similarity=1.107 Sum_probs=127.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 87 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence 48999999999999999999999988888889999888888888999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+.....+++|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 88 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887667899999999999965 456778899999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 028686 163 RDIKQRLADTD 173 (205)
Q Consensus 163 ~~~~~~~~~~~ 173 (205)
+.+.++.++..
T Consensus 167 ~~i~~~~~~~~ 177 (183)
T 2fu5_C 167 RDIKAKMDKNW 177 (183)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhhccc
Confidence 99988766543
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-35 Score=219.87 Aligned_cols=168 Identities=44% Similarity=0.785 Sum_probs=154.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|+++.+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 48999999999999999999999998888889999999988999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|+++.
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887767799999999999964 456778889999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 028686 163 RDIKQRLAD 171 (205)
Q Consensus 163 ~~~~~~~~~ 171 (205)
+.+.++.+.
T Consensus 185 ~~i~~~~~~ 193 (201)
T 2ew1_A 185 CRLISEARQ 193 (201)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999876543
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=216.03 Aligned_cols=169 Identities=59% Similarity=0.999 Sum_probs=155.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 95 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 95 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence 48999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..+++..++..++++++++||+++.|++++|++|.
T Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 96 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999888777899999999999965 456778889999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
+.+.++....
T Consensus 175 ~~i~~~~~~~ 184 (196)
T 3tkl_A 175 AEIKKRMGPG 184 (196)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHhccc
Confidence 9998876543
No 9
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=5.9e-35 Score=214.22 Aligned_cols=170 Identities=42% Similarity=0.729 Sum_probs=155.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 89 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 89 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999999998888889999888888889999889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||+++++++..+..|+..+......++|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|+++.
T Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 90 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999999887667899999999999964 455778889999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 028686 163 RDIKQRLADTD 173 (205)
Q Consensus 163 ~~~~~~~~~~~ 173 (205)
+.+.+..+...
T Consensus 169 ~~~~~~~~~~~ 179 (186)
T 2bme_A 169 RKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHhhhcC
Confidence 99988765543
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=219.71 Aligned_cols=168 Identities=45% Similarity=0.800 Sum_probs=145.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL 107 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEE
Confidence 35899999999999999999999999888888898888888888899988999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..+++.+++...++ +++++||+++.|++++|++
T Consensus 108 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887767899999999999965 355778899999999998 9999999999999999999
Q ss_pred HHHHHHHHhc
Q 028686 161 IARDIKQRLA 170 (205)
Q Consensus 161 i~~~~~~~~~ 170 (205)
|.+.+.+...
T Consensus 187 l~~~i~~~~~ 196 (201)
T 2hup_A 187 VATELIMRHG 196 (201)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999976543
No 11
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-35 Score=211.46 Aligned_cols=165 Identities=40% Similarity=0.687 Sum_probs=151.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 56799999999999999999999999988888899998888888889999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC--CccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK--RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 158 (205)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+.. ..+..++...++...+++++++||+++.|++++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999988776789999999999996532 5677888899999999999999999999999999
Q ss_pred HHHHHHH
Q 028686 159 FSIARDI 165 (205)
Q Consensus 159 ~~i~~~~ 165 (205)
++|.+.+
T Consensus 161 ~~l~~~i 167 (170)
T 1ek0_A 161 LGIGEKI 167 (170)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 9998754
No 12
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.7e-35 Score=216.06 Aligned_cols=169 Identities=48% Similarity=0.851 Sum_probs=150.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 99 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999999888888888888888888899999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.++...+++++++||+++.|++++|++|
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887667899999999999965 45577888999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 028686 162 ARDIKQRLAD 171 (205)
Q Consensus 162 ~~~~~~~~~~ 171 (205)
.+.+.++...
T Consensus 179 ~~~i~~~~~~ 188 (191)
T 2a5j_A 179 AKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999876543
No 13
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-34 Score=215.90 Aligned_cols=170 Identities=49% Similarity=0.869 Sum_probs=155.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence 48999999999999999999999998888889999888888888899899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++..++++++++||++|.|++++|++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 88 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999887666799999999999965 456778889999999999999999999999999999999
Q ss_pred HHHHHHhcccC
Q 028686 163 RDIKQRLADTD 173 (205)
Q Consensus 163 ~~~~~~~~~~~ 173 (205)
+.+.++.++..
T Consensus 167 ~~i~~~~~~~~ 177 (203)
T 1zbd_A 167 DVICEKMSESL 177 (203)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99988766543
No 14
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=5.2e-35 Score=213.49 Aligned_cols=167 Identities=37% Similarity=0.664 Sum_probs=151.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 45899999999999999999999999888888888888888888889889999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+.....+++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|++|
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887767899999999999965 45677889999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 028686 162 ARDIKQRL 169 (205)
Q Consensus 162 ~~~~~~~~ 169 (205)
.+.+.+..
T Consensus 170 ~~~~~~~~ 177 (181)
T 2efe_B 170 ARRLPRVQ 177 (181)
T ss_dssp HHTCC---
T ss_pred HHHHHhcC
Confidence 98775543
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.1e-34 Score=213.76 Aligned_cols=166 Identities=49% Similarity=0.899 Sum_probs=152.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 58999999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++++++.++++++++||++|.|++++|++|.
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999887666799999999999965 455677889999999999999999999999999999999
Q ss_pred HHHHHHh
Q 028686 163 RDIKQRL 169 (205)
Q Consensus 163 ~~~~~~~ 169 (205)
+.+.++.
T Consensus 181 ~~i~~~~ 187 (189)
T 2gf9_A 181 DVICEKM 187 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987764
No 16
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=8.2e-35 Score=210.01 Aligned_cols=163 Identities=42% Similarity=0.743 Sum_probs=149.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 46899999999999999999999999888888899888888888889889999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+.....+++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887667899999999999965 35567788899999999999999999999999999999
Q ss_pred HHHH
Q 028686 162 ARDI 165 (205)
Q Consensus 162 ~~~~ 165 (205)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8765
No 17
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.5e-34 Score=212.35 Aligned_cols=168 Identities=34% Similarity=0.568 Sum_probs=147.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999998777777775 4555677888999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++..++++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999987543 5799999999999963 556788899999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 028686 161 IARDIKQRLADT 172 (205)
Q Consensus 161 i~~~~~~~~~~~ 172 (205)
|.+.+.++....
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999998776553
No 18
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.8e-35 Score=211.48 Aligned_cols=164 Identities=36% Similarity=0.745 Sum_probs=144.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999999888888999988888888888889999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..+++..+++..+++++++||+++.|++++|++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999998876656799999999999965 45677889999999999999999999999999999999
Q ss_pred HHHHH
Q 028686 162 ARDIK 166 (205)
Q Consensus 162 ~~~~~ 166 (205)
.+.+.
T Consensus 164 ~~~~~ 168 (170)
T 1z08_A 164 CKRMI 168 (170)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98875
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=9.2e-35 Score=211.56 Aligned_cols=164 Identities=45% Similarity=0.801 Sum_probs=151.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence 58999999999999999999999998888888888888888888999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..+++++++...+++++++||+++.|++++|+++.
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 95 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887767899999999999964 455778899999999999999999999999999999999
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
+.+.+
T Consensus 174 ~~i~~ 178 (179)
T 1z0f_A 174 KKIYQ 178 (179)
T ss_dssp HHHC-
T ss_pred HHHhh
Confidence 88754
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=210.90 Aligned_cols=168 Identities=51% Similarity=0.892 Sum_probs=152.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 88 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 88 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEE
Confidence 48999999999999999999999998888889999999989999999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||+++++++..+..|+..+.... ++.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|++|.
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 89 YDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998765 5799999999999865 455778889999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
+.+.+..++.
T Consensus 167 ~~~~~~~~~~ 176 (181)
T 3tw8_B 167 ELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9998876653
No 21
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=6.8e-35 Score=210.56 Aligned_cols=166 Identities=57% Similarity=1.023 Sum_probs=145.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 35899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+......+.|+++|+||+|+. ...+..+++..+++..+++++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988776789999999999993 35567888899999999999999999999999999999
Q ss_pred HHHHHHHh
Q 028686 162 ARDIKQRL 169 (205)
Q Consensus 162 ~~~~~~~~ 169 (205)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99987653
No 22
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=7.2e-35 Score=212.96 Aligned_cols=168 Identities=30% Similarity=0.442 Sum_probs=149.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 358999999999999999999999998888889888777 6777889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++..++++++++||+++.|++++|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999999876653 5799999999999965 5678889999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028686 161 IARDIKQRLAD 171 (205)
Q Consensus 161 i~~~~~~~~~~ 171 (205)
+.+.+......
T Consensus 163 l~~~~~~~~~~ 173 (181)
T 3t5g_A 163 IILEAEKMDGA 173 (181)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHHHhcCC
Confidence 99998876543
No 23
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=7.2e-35 Score=212.12 Aligned_cols=166 Identities=38% Similarity=0.685 Sum_probs=151.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999999988888899998898888999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..++...++...+++++++||+++.|++++|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999877666899999999999965 4557788888999999999999999999999999999
Q ss_pred HHHHHHH
Q 028686 161 IARDIKQ 167 (205)
Q Consensus 161 i~~~~~~ 167 (205)
|.+.+.+
T Consensus 171 l~~~~~~ 177 (179)
T 2y8e_A 171 VAAALPG 177 (179)
T ss_dssp HHHTCC-
T ss_pred HHHHHhh
Confidence 9886643
No 24
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=212.98 Aligned_cols=167 Identities=40% Similarity=0.730 Sum_probs=153.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v 104 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV 104 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 58999999999999999999999998888889989888888888888999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus 105 ~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 105 FDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp EETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999877667899999999999965 345678889999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 028686 163 RDIKQRLA 170 (205)
Q Consensus 163 ~~~~~~~~ 170 (205)
+.+.++..
T Consensus 184 ~~i~~~~~ 191 (193)
T 2oil_A 184 KEIFAKVS 191 (193)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987654
No 25
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.4e-35 Score=216.41 Aligned_cols=169 Identities=42% Similarity=0.732 Sum_probs=144.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 104 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 104 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988888888888888888888999889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++|.
T Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 105 YDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887667899999999999964 455777888999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
+.+.++.+..
T Consensus 184 ~~i~~~~~~~ 193 (200)
T 2o52_A 184 RTILNKIDSG 193 (200)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 9998776543
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-34 Score=210.11 Aligned_cols=167 Identities=49% Similarity=0.903 Sum_probs=143.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
..++|+++|++|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 88 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 88 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEE
Confidence 3589999999999999999999999875 567788888888888888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 89 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999887767899999999999975 4557788889999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028686 161 IARDIKQRL 169 (205)
Q Consensus 161 i~~~~~~~~ 169 (205)
+.+.+.++.
T Consensus 168 l~~~~~~~~ 176 (180)
T 2g6b_A 168 IAKELKRRS 176 (180)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 999886543
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3e-34 Score=210.04 Aligned_cols=164 Identities=34% Similarity=0.561 Sum_probs=149.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999988888888888766 6777889999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCC-CCCCHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 159 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~ 159 (205)
|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ ...+..++++.++..++++++++||+ ++.|++++|+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence 999999999999999999987643 36799999999999965 56788899999999999999999999 9999999999
Q ss_pred HHHHHHHH
Q 028686 160 SIARDIKQ 167 (205)
Q Consensus 160 ~i~~~~~~ 167 (205)
+|.+.+.+
T Consensus 175 ~l~~~i~~ 182 (183)
T 3kkq_A 175 DLVRVIRQ 182 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998865
No 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.4e-34 Score=207.70 Aligned_cols=163 Identities=37% Similarity=0.680 Sum_probs=150.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 46899999999999999999999999888888999988888888899989999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+.....+.+|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999887667899999999999965 35577888999999999999999999999999999999
Q ss_pred HHHH
Q 028686 162 ARDI 165 (205)
Q Consensus 162 ~~~~ 165 (205)
.+.+
T Consensus 164 ~~~i 167 (170)
T 1z0j_A 164 SRRI 167 (170)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
No 29
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.6e-34 Score=209.50 Aligned_cols=168 Identities=34% Similarity=0.564 Sum_probs=150.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|.+|||||||+++|++..+...+.+|.+..+. ..+.+++..+.+.+||+||++++..++..+++.+|++++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 4689999999999999999999999988888888887665 667888888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||+++++++..+..|+..+.... ..++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999999885543 46799999999999965 4557788889999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028686 161 IARDIKQRLAD 171 (205)
Q Consensus 161 i~~~~~~~~~~ 171 (205)
|.+.+.++.+.
T Consensus 166 l~~~~~~~~~~ 176 (181)
T 2fn4_A 166 LVRAVRKYQEQ 176 (181)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhhcc
Confidence 99999876543
No 30
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=214.63 Aligned_cols=163 Identities=34% Similarity=0.512 Sum_probs=143.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+|+|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV 86 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence 589999999999999999999999888777788775443 5567788889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
||++++++++.+..|+..+..... ++.|+++|+||+|+.+ ..+..+++..++..++++++++||++|.|++++|++
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 87 FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 999999999999999888876543 4689999999999964 456778888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028686 161 IARDIKQR 168 (205)
Q Consensus 161 i~~~~~~~ 168 (205)
|.+.+.++
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99877544
No 31
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-35 Score=218.24 Aligned_cols=167 Identities=50% Similarity=0.900 Sum_probs=153.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 102 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|++++|++|.
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 103 YDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999887767899999999999965 456788889999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 028686 163 RDIKQRLA 170 (205)
Q Consensus 163 ~~~~~~~~ 170 (205)
+.+.++..
T Consensus 182 ~~i~~~~~ 189 (191)
T 3dz8_A 182 DAICDKMS 189 (191)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhcc
Confidence 99987654
No 32
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1e-34 Score=218.24 Aligned_cols=168 Identities=18% Similarity=0.405 Sum_probs=147.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+|+|++|||||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+||++|++.+..++..+++++|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3569999999999999999999999999888889988766 456677888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEc
Q 028686 81 LVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS 147 (205)
Q Consensus 81 ~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S 147 (205)
+|||++++++|+. +..|+..+.... +++|+++|+||+|+.++ ...+..+++..++..+++ +++++|
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 9999999999999 688999998875 57999999999999652 256888999999999998 999999
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHhc
Q 028686 148 AKTNLN-VEQVFFSIARDIKQRLA 170 (205)
Q Consensus 148 a~~~~g-i~~~~~~i~~~~~~~~~ 170 (205)
|++|.| ++++|+++++.+.+...
T Consensus 183 A~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHHHC---
T ss_pred cCCCcccHHHHHHHHHHHHhccCc
Confidence 999998 99999999999876544
No 33
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3.4e-34 Score=210.57 Aligned_cols=163 Identities=24% Similarity=0.348 Sum_probs=143.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+|+|++|||||||+++|+++.+...+.+|.+ .+...+.+++..+.+.+|||+|++.+. +++.+|+++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 4679999999999999999999999998887777743 344788899999999999999998776 777899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCC-CCCccCHHHHHHHHHHhC-CcEEEEcCCCCCCHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQV 157 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 157 (205)
+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ....+..+++..++..++ ++++++||++|.|++++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence 99999999999999999999987653 5799999999999952 346678899999999997 89999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028686 158 FFSIARDIKQRLA 170 (205)
Q Consensus 158 ~~~i~~~~~~~~~ 170 (205)
|+++.+.+.+.++
T Consensus 171 f~~l~~~i~~~~~ 183 (184)
T 3ihw_A 171 FQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887643
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4.5e-34 Score=210.47 Aligned_cols=169 Identities=44% Similarity=0.806 Sum_probs=152.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEE-EEEEEECCE---------EEEEEEEeCCChhhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~~~ 72 (205)
.+||+|+|++|+|||||+++|.++.+...+.+|.+.++. ...+.+++. .+.+.+||+||++.+..++..+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 489999999999999999999999988888899998887 666777665 7899999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||+++
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETSAANG 169 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEECCCC
Confidence 9999999999999999999999999999987764 6799999999999965 3557788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccc
Q 028686 152 LNVEQVFFSIARDIKQRLADT 172 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~~~ 172 (205)
.|++++|++|.+.+.++....
T Consensus 170 ~~v~~l~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 170 TNISHAIEMLLDLIMKRMERS 190 (195)
T ss_dssp TTHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999998876553
No 35
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=2.4e-34 Score=211.81 Aligned_cols=166 Identities=41% Similarity=0.768 Sum_probs=147.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-hhhhhhccCCcEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGI 79 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~ 79 (205)
|..+||+|+|.+|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++. .++..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 356899999999999999999999999888888999888888888999988999999999999988 8899999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC---CCHH
Q 028686 80 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN---LNVE 155 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~ 155 (205)
|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..++++.++...+++++++||+++ .|++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 99999999999999999999998775 46799999999999965 4567788899999999999999999999 9999
Q ss_pred HHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQ 167 (205)
Q Consensus 156 ~~~~~i~~~~~~ 167 (205)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (189)
T 1z06_A 177 AIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHHHHhh
Confidence 999999887754
No 36
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2e-34 Score=207.68 Aligned_cols=164 Identities=36% Similarity=0.664 Sum_probs=150.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 36899999999999999999999999888888998888888888899989999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.+ ...+..++++.++...+++++++||+++.|++++|++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 999999999999999999998766 5799999999999965 34567888999999999999999999999999999999
Q ss_pred HHHHHH
Q 028686 162 ARDIKQ 167 (205)
Q Consensus 162 ~~~~~~ 167 (205)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988753
No 37
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-34 Score=213.69 Aligned_cols=167 Identities=56% Similarity=1.020 Sum_probs=153.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 99 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV 99 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999998888889998888888889999889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++.+++.+..|+..+......++|+++|+||+|+. ...+..+++..++...+++++++||+++.|++++|++|.
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 100 YDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988776679999999999993 455678888999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 028686 163 RDIKQRLAD 171 (205)
Q Consensus 163 ~~~~~~~~~ 171 (205)
+.+.+....
T Consensus 178 ~~~~~~~~~ 186 (213)
T 3cph_A 178 KLIQEKIDS 186 (213)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999876543
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=213.42 Aligned_cols=166 Identities=45% Similarity=0.858 Sum_probs=144.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iil 104 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 104 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999999998888888888888888888999989999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++++.+..|+..+......+.|+++|+||+|+.+ ...+..++++.+++.. +++++++||++|.|++++|++
T Consensus 105 V~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 105 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887767899999999999965 4567788888888874 789999999999999999999
Q ss_pred HHHHHHHH
Q 028686 161 IARDIKQR 168 (205)
Q Consensus 161 i~~~~~~~ 168 (205)
|.+.+.++
T Consensus 184 l~~~i~~~ 191 (192)
T 2il1_A 184 LVDDILKK 191 (192)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988653
No 39
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.2e-34 Score=206.46 Aligned_cols=163 Identities=34% Similarity=0.646 Sum_probs=145.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|||||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 77899999999999999999999999888888888875554 56677888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~ 158 (205)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ ...+..+++..++..+ +++++++||++|.|++++|
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHH
Confidence 9999999999999999999987764 35799999999999965 4557788889999887 7899999999999999999
Q ss_pred HHHHHHH
Q 028686 159 FSIARDI 165 (205)
Q Consensus 159 ~~i~~~~ 165 (205)
++|.+.+
T Consensus 159 ~~l~~~i 165 (167)
T 1c1y_A 159 YDLVRQI 165 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-34 Score=213.35 Aligned_cols=165 Identities=35% Similarity=0.665 Sum_probs=150.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++|+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 35899999999999999999999999888888999988888888888888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++++.+..|+..+......++|+++|+||+|+.+ ...+..++++++++..+++++++||+++.|++++|++|
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999887766899999999999964 35677889999999999999999999999999999999
Q ss_pred HHHHHH
Q 028686 162 ARDIKQ 167 (205)
Q Consensus 162 ~~~~~~ 167 (205)
.+.+.+
T Consensus 181 ~~~i~~ 186 (192)
T 2fg5_A 181 SRQIPP 186 (192)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 987644
No 41
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=207.07 Aligned_cols=169 Identities=29% Similarity=0.420 Sum_probs=137.3
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--hhhhhhhhccCCcE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG 78 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 78 (205)
+..+||+++|++|||||||+++|.+..+...+ ++.+.+++...+.+++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45789999999999999999999998865443 3456667777888899999999999999987 56777888999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686 79 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 157 (205)
+++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ ...+..++++.++..++++++++||++|.|++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 999999999999999999999887753 35799999999999965 4567788888999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028686 158 FFSIARDIKQRLAD 171 (205)
Q Consensus 158 ~~~i~~~~~~~~~~ 171 (205)
|++|.+.+..+.+.
T Consensus 160 ~~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 160 FEGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998776543
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=6.1e-35 Score=212.57 Aligned_cols=167 Identities=34% Similarity=0.523 Sum_probs=147.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECC-EEEEEEEEeCCChhhhhhhhhhhccCCcEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 79 (205)
+..+||+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.+||+||++.+..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 3569999999999999999999999988777788888888888888876 678999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhcC--CCCc-EEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686 80 LLVYDVTDESSFNNIRNWIRNIEQHAS--DNVN-KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
++|||++++++++.+..|+..+..... .+.| +++|+||+|+.+ ...+..+++..++...+++++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999999876532 2355 889999999965 355778889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 157 VFFSIARDIKQR 168 (205)
Q Consensus 157 ~~~~i~~~~~~~ 168 (205)
+|++|.+.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999987553
No 43
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3.4e-34 Score=206.00 Aligned_cols=165 Identities=36% Similarity=0.607 Sum_probs=147.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 77899999999999999999999999988777787764 44677788888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHH
Confidence 99999999999999999998877643 5799999999999964 456778888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028686 160 SIARDIKQ 167 (205)
Q Consensus 160 ~i~~~~~~ 167 (205)
++.+.+.+
T Consensus 159 ~l~~~~~~ 166 (167)
T 1kao_A 159 EIVRQMNY 166 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988754
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8.3e-34 Score=206.39 Aligned_cols=163 Identities=39% Similarity=0.671 Sum_probs=145.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 86 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT 86 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEE
Confidence 58999999999999999999999998888889999888888889999989999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~ 157 (205)
||+++++++..+..|+..+..... .++|+++|+||+|+. ...+..+++..++. ..+++++++||++|.|++++
T Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 87 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 999999999999999999977653 678999999999996 35577888888888 55689999999999999999
Q ss_pred HHHHHHHHHH
Q 028686 158 FFSIARDIKQ 167 (205)
Q Consensus 158 ~~~i~~~~~~ 167 (205)
|+++.+.+.+
T Consensus 165 ~~~l~~~~~~ 174 (177)
T 1wms_A 165 FEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 45
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=211.93 Aligned_cols=163 Identities=29% Similarity=0.463 Sum_probs=142.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..+ ..+++.+|++++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 468999999999999999999999998888889988666 456778888999999999999988875 678999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC-CCCCCHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLNVEQV 157 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~~ 157 (205)
|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++.+++..++++++++|| +++.|++++
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence 9999999999999999999987642 5799999999999965 4567889999999999999999999 899999999
Q ss_pred HHHHHHHHHH
Q 028686 158 FFSIARDIKQ 167 (205)
Q Consensus 158 ~~~i~~~~~~ 167 (205)
|++|++.+.+
T Consensus 177 f~~l~~~i~~ 186 (187)
T 3c5c_A 177 FHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 46
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=5.5e-34 Score=205.12 Aligned_cols=165 Identities=35% Similarity=0.621 Sum_probs=144.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 6779999999999999999999999998878888877555 355678888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 99999999999999999999987664 5799999999999965 345778899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028686 160 SIARDIKQ 167 (205)
Q Consensus 160 ~i~~~~~~ 167 (205)
++.+.+.+
T Consensus 160 ~l~~~i~~ 167 (168)
T 1u8z_A 160 DLMREIRA 167 (168)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998753
No 47
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=215.35 Aligned_cols=165 Identities=44% Similarity=0.749 Sum_probs=139.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 35899999999999999999999999888888888888888888899999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC-----CCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
|||++++++++.+..|+..+......++|+++|+||+|+.+ ....+..+++..++...+++++++||++|.|+++
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 99999999999999999999877666799999999999963 2456778888999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028686 157 VFFSIARDIK 166 (205)
Q Consensus 157 ~~~~i~~~~~ 166 (205)
+|++|.+.+.
T Consensus 187 l~~~l~~~i~ 196 (199)
T 2p5s_A 187 AVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 48
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=7.4e-34 Score=210.06 Aligned_cols=166 Identities=30% Similarity=0.541 Sum_probs=148.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 4589999999999999999999999988888888886665 467788899999999999999999999999999999999
Q ss_pred EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-CCccCHHHHHHHHHHhCCc-EEEEcCCCCCCHHHHH
Q 028686 82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVF 158 (205)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~ 158 (205)
|||++++++|+.+ ..|+..+.... +++|+++|+||+|+.+. ...+..+++..++...++. ++++||++|.|++++|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence 9999999999997 66888887664 57999999999999753 3567889999999999987 9999999999999999
Q ss_pred HHHHHHHHHHh
Q 028686 159 FSIARDIKQRL 169 (205)
Q Consensus 159 ~~i~~~~~~~~ 169 (205)
+++.+.+.++.
T Consensus 180 ~~l~~~i~~~~ 190 (194)
T 3reg_A 180 EKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHHHhcC
Confidence 99999887643
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3e-34 Score=207.24 Aligned_cols=165 Identities=25% Similarity=0.337 Sum_probs=134.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh-hhhhhccCCcEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL 81 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 81 (205)
.+||+++|++|||||||+++|.+........++.+.++....+.+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998877666666666778888888999999999999999998875 77778899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 9999999999999999999987654 4799999999999965 4668889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028686 161 IARDIKQR 168 (205)
Q Consensus 161 i~~~~~~~ 168 (205)
+.+.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988764
No 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.4e-34 Score=209.85 Aligned_cols=169 Identities=41% Similarity=0.654 Sum_probs=138.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
..++|+++|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|++|
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 35899999999999999999999999888888888888887777776 56688999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC----CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEcCCCCCCHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~ 155 (205)
+|||++++++++.+..|+..+..... .++|+++|+||+|+.+....+..+++..++. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence 99999999999999999999877653 6799999999999966556677888888888 456899999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028686 156 QVFFSIARDIKQRLA 170 (205)
Q Consensus 156 ~~~~~i~~~~~~~~~ 170 (205)
++|++|.+.+.++++
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 167 TAFEEIARSALQQNQ 181 (182)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987653
No 51
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=6.6e-34 Score=207.32 Aligned_cols=164 Identities=23% Similarity=0.362 Sum_probs=140.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|||||||+++|+++.+.. +.+|.+..+ ...+.+++..+.+.+||++|+++ ..+++++|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 356899999999999999999999998876 677777444 57778899999999999999886 45778899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhc---CCCCcEEEEEeCCCCCC-CCCccCHHHHHHHHHHh-CCcEEEEcCCCCCCHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVE 155 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 155 (205)
+|||++++++|+.+..|++.+.... .+++|+++|+||+|+.+ ....+..+++..++... +++++++||++|.|++
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 9999999999999999877765543 25799999999999953 34567888899998876 6899999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 028686 156 QVFFSIARDIKQRLAD 171 (205)
Q Consensus 156 ~~~~~i~~~~~~~~~~ 171 (205)
++|+++.+.+.+..+.
T Consensus 158 ~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 158 RVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999876654
No 52
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.7e-34 Score=209.08 Aligned_cols=167 Identities=44% Similarity=0.761 Sum_probs=152.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 35899999999999999999999999888889999988888888999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||+++++++..+..|+..+..... .++|+++|+||+|+. ...+..+++..++...+++++++||+++.|++++|++
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999977653 579999999999994 3556788899999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028686 161 IARDIKQRLA 170 (205)
Q Consensus 161 i~~~~~~~~~ 170 (205)
|.+.+.+...
T Consensus 172 l~~~~~~~~~ 181 (195)
T 1x3s_A 172 LVEKIIQTPG 181 (195)
T ss_dssp HHHHHHTSGG
T ss_pred HHHHHHhhhh
Confidence 9999876543
No 53
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=9.4e-35 Score=217.71 Aligned_cols=168 Identities=31% Similarity=0.599 Sum_probs=143.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 458999999999999999999999998888888887555 4566788888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-------ccCHHHHHHHHHHhCC-cEEEEcCCCCC
Q 028686 82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-------AVPTSKGQALADEYGI-KFFETSAKTNL 152 (205)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 152 (205)
|||++++++|+.+. .|+..+.... +++|++||+||+|+.+... .+..+++..++..++. +++++||++|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 99999999999997 7999998765 4799999999999865321 2467888999999995 99999999999
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 028686 153 NVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~~~~ 171 (205)
|++++|++|++.+.+..+.
T Consensus 166 gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp THHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHhhhhhh
Confidence 9999999999998765443
No 54
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=212.26 Aligned_cols=166 Identities=25% Similarity=0.329 Sum_probs=143.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh-hhhhhccCCcEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGIL 80 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i 80 (205)
..+||+|+|++|||||||+++|.+......+.++.+.++....+.+++..+.+.+||++|++.+.. ++..+++.+|++|
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 358999999999999999999986554434455566667777788899999999999999987764 7788899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..++++.++..++++++++||+++.|++++|+
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 180 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence 99999999999999999999887653 5799999999999965 456778899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028686 160 SIARDIKQR 168 (205)
Q Consensus 160 ~i~~~~~~~ 168 (205)
++++.+...
T Consensus 181 ~l~~~i~~~ 189 (195)
T 3cbq_A 181 GAVRQIRLR 189 (195)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999988643
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.5e-33 Score=206.42 Aligned_cols=169 Identities=34% Similarity=0.611 Sum_probs=149.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4568999999999999999999999998888888877555 455678888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||+++++++..+..|+..+..... .++|+++|+||+|+.+ ...+..+++..+++..+++++++||+++.|++++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 99999999999999999999987764 4799999999999965 345778889999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028686 160 SIARDIKQRLAD 171 (205)
Q Consensus 160 ~i~~~~~~~~~~ 171 (205)
+|.+.+.+++.+
T Consensus 174 ~l~~~i~~~~~~ 185 (187)
T 2a9k_A 174 DLMREIRARKME 185 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcc
Confidence 999999876544
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=209.81 Aligned_cols=168 Identities=29% Similarity=0.483 Sum_probs=141.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++..++..++.++|++++
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 468999999999999999999999988888888887544 4667788888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcC
Q 028686 82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa 148 (205)
|||++++++|+.+. .|+..+.... +++|+++|+||+|+.+. ...+..+++..++...+. +++++||
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999997 6999988765 47999999999999652 345778889999999887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Q 028686 149 KTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
++|.|++++|++|.+.+.+....
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999999877654
No 57
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=214.01 Aligned_cols=168 Identities=28% Similarity=0.492 Sum_probs=144.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999998888888888666 5666677777899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999977643 5789999999999965 4667888999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028686 161 IARDIKQRLAD 171 (205)
Q Consensus 161 i~~~~~~~~~~ 171 (205)
|.+.+.+....
T Consensus 181 l~~~i~~~~~~ 191 (201)
T 3oes_A 181 VIQEIARVENS 191 (201)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHhhhhh
Confidence 99999876544
No 58
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=4e-34 Score=215.02 Aligned_cols=168 Identities=43% Similarity=0.813 Sum_probs=150.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE----------EEEEEEEeCCChhhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQERFRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~~~ 72 (205)
.+||+|+|++|||||||+++|++..+...+.+|.+.++....+.+++. .+.+.+||+||++.+..++..+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 589999999999999999999999888888888888888777777665 7899999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
++.+|++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+ ...+..++++.++...+++++++||+++
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g 183 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATG 183 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcEEEEECCCC
Confidence 9999999999999999999999999988876553 6799999999999965 4557788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 028686 152 LNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~~ 171 (205)
.|++++|++|.+.+.++.+.
T Consensus 184 ~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 184 QNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp BTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999876554
No 59
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.8e-34 Score=215.05 Aligned_cols=170 Identities=25% Similarity=0.445 Sum_probs=113.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC--CCCCCcccceeeEEEEEEEEECCE--EEEEEEEeCCChhhhhhhhhhhccCCc
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGAM 77 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d 77 (205)
..++|+|+|++|||||||+++|++. .+...+.+|.+.++....+.+++. .+.+.+||+||++.+..++..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 3589999999999999999999998 777788888888888888888877 889999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC-CCC
Q 028686 78 GILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT-NLN 153 (205)
Q Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~g 153 (205)
++|+|||++++++|+.+..|+..+..... .++|+++|+||+|+.+....+..+++..++..++++++++||++ +.|
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g 178 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD 178 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC
Confidence 99999999999999999999999988765 57999999999999652355778899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 028686 154 VEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 154 i~~~~~~i~~~~~~~~~~ 171 (205)
++++|++|.+.+.+..+.
T Consensus 179 i~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 179 ADAPFLSIATTFYRNYED 196 (208)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988766543
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-33 Score=207.01 Aligned_cols=166 Identities=34% Similarity=0.544 Sum_probs=147.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|++..+...+.+|.+..+ ...+.+++..+.+.+||+||++. ..++..+++.+|++++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 358999999999999999999999998888888887555 45677888889999999999987 7778889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC-CHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFF 159 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~ 159 (205)
|||++++++|+.+..|+..+..... .++|+++|+||+|+.+ ...+..+++..++...+++++++||+++. |++++|+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence 9999999999999999999887643 6799999999999965 35677889999999999999999999999 9999999
Q ss_pred HHHHHHHHHhc
Q 028686 160 SIARDIKQRLA 170 (205)
Q Consensus 160 ~i~~~~~~~~~ 170 (205)
+|.+.+.++..
T Consensus 184 ~l~~~i~~~~~ 194 (196)
T 2atv_A 184 ELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhhcc
Confidence 99999987654
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6.5e-33 Score=205.74 Aligned_cols=163 Identities=32% Similarity=0.593 Sum_probs=146.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEE-------------------------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR------------------------------- 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~------------------------------- 51 (205)
.+||+|+|++|+|||||+++|++..+...+.+|.+.++....+.+++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 4899999999999999999999999888889999988888888877655
Q ss_pred ------EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 ------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
+.+.+||+||++.+..++..+++.+|++++|||+++++++..+..|+..+..... .|+++|+||+|+ ...
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~--~~~ 162 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK--NKF 162 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC--C-C
T ss_pred cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc--ccc
Confidence 8899999999999999999999999999999999999999999999999987653 999999999993 245
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 126 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
.+..+++..++...+++++++||+++.|++++|++|.+.+.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 163 QVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 67789999999999999999999999999999999999987654
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.4e-33 Score=206.59 Aligned_cols=165 Identities=30% Similarity=0.559 Sum_probs=146.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 5679999999999999999999999988888888887554 456678889999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEc
Q 028686 81 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 147 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 147 (205)
+|||+++++++..+. .|+..+.... ++.|+++|+||+|+.+.. ..+..+++..++...+. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999997 6998888765 479999999999996531 45677888899999886 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 028686 148 AKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 148 a~~~~gi~~~~~~i~~~~~~ 167 (205)
|++|.|++++|+++.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCccCHHHHHHHHHHHHhc
Confidence 99999999999999998754
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2e-33 Score=202.28 Aligned_cols=163 Identities=29% Similarity=0.400 Sum_probs=122.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+++|++|||||||+++|.+.... ...++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 579999999999999999999876653 3334444444 45667889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 99999999999999999987754 36799999999999975 46678889999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028686 162 ARDIKQR 168 (205)
Q Consensus 162 ~~~~~~~ 168 (205)
.+.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998765
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.3e-33 Score=207.10 Aligned_cols=164 Identities=22% Similarity=0.483 Sum_probs=144.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|.+..+...+.+|.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 4689999999999999999999999988888888876653 566778888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcC
Q 028686 82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (205)
|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+. ...+..+++..+++.++ ++++++||
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 9999999999998 67999887765 57999999999999642 24577888999999888 79999999
Q ss_pred C-CCCCHHHHHHHHHHHHHH
Q 028686 149 K-TNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 149 ~-~~~gi~~~~~~i~~~~~~ 167 (205)
+ ++.|++++|+++.+.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998764
No 65
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=8.6e-33 Score=198.33 Aligned_cols=164 Identities=36% Similarity=0.602 Sum_probs=146.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..++..+|+++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 7789999999999999999999999988777777776443 566778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ ..+..+++.++++.++++++++||+++.|++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999877653 4799999999999965 45678889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028686 160 SIARDIKQ 167 (205)
Q Consensus 160 ~i~~~~~~ 167 (205)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988753
No 66
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-33 Score=206.27 Aligned_cols=162 Identities=28% Similarity=0.529 Sum_probs=144.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|++|+|||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 48999999999999999999999998888888887555 45667788889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686 83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (205)
||++++++|..+. .|+..+.... +++|+++|+||+|+.+.. ..+..+++..++..+++ +++++||+
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 9999999999997 7999988765 479999999999997531 35778889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARDIK 166 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~~~ 166 (205)
+|.|++++|++|.+.+.
T Consensus 176 ~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998875
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.3e-32 Score=202.61 Aligned_cols=167 Identities=36% Similarity=0.587 Sum_probs=137.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..++|+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 5679999999999999999999999988777777776444 466778888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
+|||+++++++..+..|+..+..... .++|+++|+||+|+.+ ..+..++++++++..+++++++||+++.|++++|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999877653 5799999999999965 45678889999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028686 160 SIARDIKQRLA 170 (205)
Q Consensus 160 ~i~~~~~~~~~ 170 (205)
+|.+.+.+.+.
T Consensus 176 ~l~~~~~~~~~ 186 (190)
T 3con_A 176 TLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 68
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-33 Score=208.91 Aligned_cols=165 Identities=27% Similarity=0.400 Sum_probs=139.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhhhhhccCCcEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGI 79 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~ 79 (205)
.+||+|+|++|||||||+++|++.. +... .++++.+++...+.+++..+.+.+|||+|.+. +..+...+++.++++
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 4899999999999999999999754 3333 34566677778888999999999999999876 566777888999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHH
Q 028686 80 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 158 (205)
|+|||++++++|+.+..|+..+.... ..++|+++|+||+||.+ ...+..++.+.++..++++++++||++|.||+++|
T Consensus 116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194 (211)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999998887643 25799999999999965 45577788888899999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028686 159 FSIARDIKQRL 169 (205)
Q Consensus 159 ~~i~~~~~~~~ 169 (205)
+++.+.+....
T Consensus 195 ~~l~~~i~~~~ 205 (211)
T 2g3y_A 195 EGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999886543
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-33 Score=209.19 Aligned_cols=164 Identities=22% Similarity=0.482 Sum_probs=145.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|.+..+...+.+|.+.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 358999999999999999999999998888888888666 4566778888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhC-CcEEEEcC
Q 028686 82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (205)
|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+. ...+..++++.+++.++ ++++++||
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 9999999999999 67999887765 57999999999999642 24577888999999888 79999999
Q ss_pred C-CCCCHHHHHHHHHHHHHH
Q 028686 149 K-TNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 149 ~-~~~gi~~~~~~i~~~~~~ 167 (205)
+ ++.|++++|+++++.+.+
T Consensus 185 k~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhh
Confidence 9 689999999999998875
No 70
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=209.08 Aligned_cols=166 Identities=32% Similarity=0.574 Sum_probs=125.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 458999999999999999999999988777778776444 4567788889999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686 82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa 148 (205)
|||++++++|+.+. .|+..+.... +++|+++|+||+|+.+.. ..+..+++..+++..++ +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999997 6999987765 579999999999996532 25677888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 028686 149 KTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~~~~~ 169 (205)
++|.|++++|++|.+.+.+..
T Consensus 191 ~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999987654
No 71
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=205.76 Aligned_cols=166 Identities=33% Similarity=0.577 Sum_probs=139.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
|..+||+++|.+|||||||+++|++..+...+.++.+..+.. .+.+++..+.+.+||+||++++..++..+++++|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 356899999999999999999999999888888888766653 4678888899999999999999999999999999999
Q ss_pred EEEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEc
Q 028686 81 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS 147 (205)
Q Consensus 81 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S 147 (205)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.. ..+..++...++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999999 56888887754 579999999999996531 34677888889988887 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 028686 148 AKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 148 a~~~~gi~~~~~~i~~~~~~~ 168 (205)
|++|.|++++|++|.+.+...
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988643
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.6e-32 Score=204.16 Aligned_cols=163 Identities=31% Similarity=0.565 Sum_probs=143.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 4589999999999999999999999988888888876665 346788888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHH-HHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686 82 VYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa 148 (205)
|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.. ..+..+++..++...+. +++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 9999999999999 57888887755 579999999999996531 34677888999999887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~~ 166 (205)
++|.|++++|++|.+.+.
T Consensus 182 ~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.5e-33 Score=199.49 Aligned_cols=163 Identities=33% Similarity=0.485 Sum_probs=142.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3589999999999999999999999887777787775543 556778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 159 (205)
|||++++++++.+..|+..+..... ++.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 9999999999999999988876542 4799999999999965 355677888889999999999999999999999999
Q ss_pred HHHHHHH
Q 028686 160 SIARDIK 166 (205)
Q Consensus 160 ~i~~~~~ 166 (205)
+|.+.+.
T Consensus 160 ~l~~~~~ 166 (172)
T 2erx_A 160 ELLNLEK 166 (172)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9987654
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=8.2e-33 Score=207.98 Aligned_cols=170 Identities=29% Similarity=0.475 Sum_probs=148.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
..+||+|+|.+|||||||+++|+++.+...+.++.+..+....+... +..+.+.+||+||++.+..++..++..+|++|
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 46899999999999999999999998888888888877776666554 44488999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHH
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 160 (205)
+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ ...+..+++..++...+++++++||++|.|++++|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 999999999999999999999888767799999999999965 4567788888899889999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 028686 161 IARDIKQRLADT 172 (205)
Q Consensus 161 i~~~~~~~~~~~ 172 (205)
|.+.+.+.....
T Consensus 169 l~~~~~~~~~~~ 180 (218)
T 4djt_A 169 LARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHCCTTCC
T ss_pred HHHHHhcccccc
Confidence 999987765443
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=7.2e-32 Score=199.45 Aligned_cols=166 Identities=27% Similarity=0.404 Sum_probs=137.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC--CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-hhhhhhhhccCCcE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMG 78 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~ 78 (205)
..+||+++|++|||||||+++|++.. +...+ ++++.+++...+.+++..+.+.+||++|.+. +..+...+++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 46899999999999999999999643 33333 4466677777888999999999999999875 55677788889999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHH
Q 028686 79 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 157 (205)
+++|||+++++||+.+..|+..+.... ..++|+++|+||+|+.. ...+..++...++..++++++++||++|.||+++
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999999998887653 35799999999999964 4556778888888888999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028686 158 FFSIARDIKQRL 169 (205)
Q Consensus 158 ~~~i~~~~~~~~ 169 (205)
|+++.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886544
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2.5e-33 Score=204.67 Aligned_cols=163 Identities=31% Similarity=0.617 Sum_probs=127.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+||+||++++..++..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4689999999999999999999999887777787764443 334456677888999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCC---------ccCHHHHHHHHHHhCC-cEEEEcCCC
Q 028686 82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR---------AVPTSKGQALADEYGI-KFFETSAKT 150 (205)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (205)
|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+... .+..+++..++...+. +++++||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999997 6999888765 4799999999999865321 2467888999999996 999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIARDIK 166 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~~ 166 (205)
|.|++++|+++.+.+.
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=5.1e-33 Score=205.42 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=138.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC-----------cccceeeEEEEEEE-EECCEEEEEEEEeCCChhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS-----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFRTITT 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~ 70 (205)
.+||+|+|++|||||||++.+.+. +... +.+|.+.++....+ .+++..+.+.+|||||++++..++.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 589999999999999999766554 3333 34566666665555 6677889999999999999999999
Q ss_pred hhccCCcEEEEEEeCC------ChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cE
Q 028686 71 AYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KF 143 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~ 143 (205)
.+++++|++|+|||++ +.++|..+..|+..+.. ...++|+++|+||+|+.+ .+..+++.+++...++ ++
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~ 168 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGKFPV 168 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTCCSCE
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcCCceE
Confidence 9999999999999999 66788888888888743 336799999999999954 3778899999999998 99
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 144 FETSAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 144 ~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
+++||++|.|++++|++|.+.+.++.+.
T Consensus 169 ~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 169 LEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999887654
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3.3e-32 Score=203.04 Aligned_cols=162 Identities=30% Similarity=0.572 Sum_probs=140.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|.+|||||||+++|+++.+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999999998888888776 4455677788888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686 82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa 148 (205)
|||++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.. ..+..+++..+++..+. +++++||
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 99999999999997 7998888776 679999999999986532 23677888899999885 6999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARDI 165 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~ 165 (205)
++|.|++++|+++.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.1e-35 Score=216.50 Aligned_cols=164 Identities=60% Similarity=1.017 Sum_probs=140.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 112 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999988888888888888888899999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||++++++|+.+..|+..+......++|+++|+||+|+.+ ...+..+++..++..++++++++||+++.|++++|++|.
T Consensus 113 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 113 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp C-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999999877666899999999999965 455666778889999999999999999999999999998
Q ss_pred HHHHH
Q 028686 163 RDIKQ 167 (205)
Q Consensus 163 ~~~~~ 167 (205)
+.+.+
T Consensus 192 ~~l~~ 196 (199)
T 3l0i_B 192 AEIKK 196 (199)
T ss_dssp TTTTT
T ss_pred HHHHH
Confidence 77643
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=8e-33 Score=208.61 Aligned_cols=165 Identities=29% Similarity=0.589 Sum_probs=147.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++++
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 93 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence 46899999999999999999988888777888899888988888999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
|||++++++|..+..|+..+.... +++|+++|+||+|+.+.. + ..+...++...+++++++||++|.|++++|++|
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccc--c-cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999998875 579999999999996532 2 235667788889999999999999999999999
Q ss_pred HHHHHHHhc
Q 028686 162 ARDIKQRLA 170 (205)
Q Consensus 162 ~~~~~~~~~ 170 (205)
.+.+.....
T Consensus 170 ~~~l~~~~~ 178 (221)
T 3gj0_A 170 ARKLIGDPN 178 (221)
T ss_dssp HHHHHTCTT
T ss_pred HHHHHhCcc
Confidence 999876543
No 81
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=9.3e-31 Score=194.33 Aligned_cols=169 Identities=44% Similarity=0.784 Sum_probs=149.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.++.++..++..++++++|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 48999999999999999999999998888888888888888899999999999999999999998889999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||+++..+++++..|+..+......+.|+++++||.|+.+ ...+..++++.++...++.++++||+++.|++++|+++.
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999888766556789999999999965 345667888999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 028686 163 RDIKQRLADT 172 (205)
Q Consensus 163 ~~~~~~~~~~ 172 (205)
+.+.+.....
T Consensus 164 ~~~~~~~~~~ 173 (199)
T 2f9l_A 164 TEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhhc
Confidence 9998765443
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=4e-31 Score=195.74 Aligned_cols=163 Identities=17% Similarity=0.300 Sum_probs=130.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
...+|+|+|.+|||||||+++|++..+.. .+.+|.+..+ ..+... .+.+.+||+||++.+..++..+++++|++|
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG--RVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999999887 7788888443 334443 478999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC--------CCCcEEEEEeCCCCCCCCCccCHHHHHHH------HHHhCCcEEEE
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKVLVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFET 146 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~ 146 (205)
+|||++++++|..+..|+..+..... .++|+++|+||+|+.+.. ..+++... +...+++++++
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---TAAELVEILDLTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---CHHHHHHHhcchhhccCCeeEEEEe
Confidence 99999999999999999888865421 279999999999996532 22222221 14456899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 147 SAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
||+++.|++++|++|.+.+.+....
T Consensus 169 Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 169 NGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred eCCCccCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999876543
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=9.6e-31 Score=192.68 Aligned_cols=159 Identities=18% Similarity=0.317 Sum_probs=132.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC-CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 80 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (205)
..+||+|+|.+|||||||+++|.+.. +...+.+|.+ +....+.+++ +.+.+||+||++.+..++..+++++|+++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999887 5666777777 4445566665 67999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhcC---CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCC
Q 028686 81 LVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNL 152 (205)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 152 (205)
+|||++++++|..+..|+..+..... .+.|+++|+||+|+.+ ....+++.++.. ..+++++++||+++.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 99999999999999999988876543 4799999999999964 234566665553 235789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDIKQ 167 (205)
Q Consensus 153 gi~~~~~~i~~~~~~ 167 (205)
|++++|++|.+.+.+
T Consensus 173 gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 173 GLQEGVDWLQDQIQT 187 (190)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.8e-30 Score=190.43 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=131.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|||||||+++|.++. ...+.||.+.. ...+.+++ +.+.+||+||++++..++..+++++|++++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999999988 66777888743 44555554 779999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||+++.|++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999999988886643 257999999999999652 23344433322 345789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQR 168 (205)
Q Consensus 156 ~~~~~i~~~~~~~ 168 (205)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=9.3e-31 Score=192.59 Aligned_cols=160 Identities=21% Similarity=0.372 Sum_probs=130.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|++|||||||+++|+++.+...+.+|.+.++.. +... .+.+.+||+||++++..++..+++.+|++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 46899999999999999999999999888888888866653 3444 4779999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++++.+..|+..+.... ..++|+++|+||+|+.+. ...++..+... ..+++++++||++|.|++
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC---CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 999999999999999988886542 257999999999999652 22233322211 234679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQR 168 (205)
Q Consensus 156 ~~~~~i~~~~~~~ 168 (205)
++|++|.+.+.++
T Consensus 174 ~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 174 ITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999876543
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=4e-31 Score=191.03 Aligned_cols=157 Identities=21% Similarity=0.365 Sum_probs=127.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|++|+|||||+++|.++.+. .+.||.+.. ...+.+++ +.+.+||+||++.+..++..+++.+|++++|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 589999999999999999999998874 356676643 34555554 7799999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++... +...+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 99999999999998888876543 2579999999999996531 22333222 223456899999999999999
Q ss_pred HHHHHHHHHHH
Q 028686 157 VFFSIARDIKQ 167 (205)
Q Consensus 157 ~~~~i~~~~~~ 167 (205)
+|+++.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1e-31 Score=192.99 Aligned_cols=156 Identities=19% Similarity=0.348 Sum_probs=124.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEE
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 83 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (205)
+||+++|++|||||||+++|+++.+.. +.||.+. ....+...+ +.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888754 4667763 333444443 77999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHHHH
Q 028686 84 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 84 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~ 157 (205)
|++++++|+.+..|+..+.... .++.|+++|+||+|+.+. ...+++.... ...+++++++||++|.|++++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 9999999999999988886542 357999999999999642 2223332221 123467999999999999999
Q ss_pred HHHHHHHHHH
Q 028686 158 FFSIARDIKQ 167 (205)
Q Consensus 158 ~~~i~~~~~~ 167 (205)
|+++.+.+.+
T Consensus 153 ~~~l~~~i~~ 162 (164)
T 1r8s_A 153 LDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=3.4e-31 Score=196.68 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=123.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+|||||++.++.++..+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999988764 455666643 34566666 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-----------------hCCcE
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----------------YGIKF 143 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (205)
|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+ .+..+++.+++.. .++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999999887643 35799999999999954 4567777776652 34689
Q ss_pred EEEcCCCCCCHHHHHHHHHHH
Q 028686 144 FETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 144 ~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1e-30 Score=192.89 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=129.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|++|||||||+++|.++.+. .+.+|.+.. ...+.+++ +.+.+||+||++.++.++..+++.+|++++|
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 479999999999999999999998864 456677653 45566776 7899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH------------hCCcEEEEcCC
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~ 149 (205)
||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+ .+..+++.++... .+++++++||+
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 99999999999999998887643 25799999999999964 4556666665442 34689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARD 164 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~ 164 (205)
+|.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999999753
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-30 Score=191.90 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=126.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|.+|||||||+++|+++.+. .+.+|.+.. ...+.+++ +.+.+||+||++++..++..+++++|++++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999999988876 556666633 34455555 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+... ..+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC---CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 999999999999999998887653 25799999999999964 233455544432 335789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028686 156 QVFFSIARDIKQRL 169 (205)
Q Consensus 156 ~~~~~i~~~~~~~~ 169 (205)
++|++|.+.+....
T Consensus 167 ~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 167 QGLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998875443
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.7e-31 Score=197.31 Aligned_cols=157 Identities=20% Similarity=0.352 Sum_probs=121.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|+++.+. .+.||.+ +....+...+ +.+.+||+||++++..++..+++++|++++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988765 3456666 3344555554 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.... ...+++++++||++|.|++
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 999999999999999998886543 257999999999999642 2223332221 1234679999999999999
Q ss_pred HHHHHHHHHHH
Q 028686 156 QVFFSIARDIK 166 (205)
Q Consensus 156 ~~~~~i~~~~~ 166 (205)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=1.9e-30 Score=189.99 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=125.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|||||||+++|.+..+ ..+.||.+ +....+.+++ +.+.+||+||++.+..++..+++.+|++++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999999998764 34566666 3344556664 779999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHH-----HHhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.... ...+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999999888875542 3579999999999996531 233333221 1234679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQR 168 (205)
Q Consensus 156 ~~~~~i~~~~~~~ 168 (205)
++|+++.+.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 93
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.5e-29 Score=185.63 Aligned_cols=162 Identities=46% Similarity=0.820 Sum_probs=146.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||++|.+++..++..+++.++++++|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 48999999999999999999999998888899999999888999999999999999999999888888899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 83 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||+++..+|+++..|+..+......+.|+++++||.|+.+ ...+..++++.++...++.++++|++++.|++++|+++.
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 109 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999998999888766556789999999999965 345667888999999999999999999999999999998
Q ss_pred HHH
Q 028686 163 RDI 165 (205)
Q Consensus 163 ~~~ 165 (205)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.5e-30 Score=190.36 Aligned_cols=155 Identities=20% Similarity=0.266 Sum_probs=126.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|.+|||||||+++|+++.+ ..+.+|.+... ..+.+++ +.+.+||+||++++..++..+++++|++++
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887 55566666433 3455555 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 171 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 171 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 999999999999999888887643 357999999999999542 33444444332 234689999999999999
Q ss_pred HHHHHHHHH
Q 028686 156 QVFFSIARD 164 (205)
Q Consensus 156 ~~~~~i~~~ 164 (205)
++|++|.+.
T Consensus 172 ~l~~~l~~~ 180 (181)
T 2h17_A 172 QGLEWMMSR 180 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999764
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=2e-29 Score=200.50 Aligned_cols=163 Identities=28% Similarity=0.564 Sum_probs=144.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV 82 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (205)
.++|+++|.+|+|||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 48999999999999999999999998888888887544 56678889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCC-----------CCccCHHHHHHHHHHhCC-cEEEEcCC
Q 028686 83 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK 149 (205)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (205)
||++++++|+.+. .|+..+.... .++|+++|+||+|+.+. ...+..+++..++...++ +++++||+
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 9999999999997 6888887765 37999999999998653 245778889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028686 150 TNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~~~~ 167 (205)
+|.|++++|++|.+.+..
T Consensus 313 ~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999988753
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=3.9e-31 Score=194.04 Aligned_cols=164 Identities=21% Similarity=0.356 Sum_probs=124.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC--CCCCCcccceeeEEEEEEEEE---CCEEEEEEEEeCCChhhhhhhhhhhccCCc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM 77 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 77 (205)
.+||+++|++|||||||+++|++. .+...+.+|.+.++....+.+ ++..+.+.+||++|++++..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 455667888888877666544 345678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC---HHHHHHHHHHhCCc----EEEEcCC
Q 028686 78 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP---TSKGQALADEYGIK----FFETSAK 149 (205)
Q Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~ 149 (205)
++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+. ..+. .+....++...+++ ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 58999999999987654 46999999999999542 2211 23345566666776 9999999
Q ss_pred CCC-CHHHHHHHHHHHHHHH
Q 028686 150 TNL-NVEQVFFSIARDIKQR 168 (205)
Q Consensus 150 ~~~-gi~~~~~~i~~~~~~~ 168 (205)
++. +++++++.+.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 996 9999999998877553
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.9e-30 Score=189.60 Aligned_cols=160 Identities=21% Similarity=0.322 Sum_probs=127.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|||||||+++|.++.+ ..+.+|.+.. ...+.+++ +.+.+||+||++++..++..+++++|++++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999998876 5556676633 34455555 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 999999999999999998887654 367999999999999642 33444444332 123579999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028686 156 QVFFSIARDIKQRL 169 (205)
Q Consensus 156 ~~~~~i~~~~~~~~ 169 (205)
++|++|.+.+.+++
T Consensus 169 ~l~~~l~~~~~~~q 182 (183)
T 1moz_A 169 EGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987654
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=8.3e-31 Score=192.79 Aligned_cols=159 Identities=16% Similarity=0.295 Sum_probs=127.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|++|||||||+++|.++.+.. +.||.+. ....+.+++ +.+.+|||||++++..++..+++++|++++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887643 5566663 334455554 779999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHH-----HHHhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 155 (205)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++... +...+++++++||+++.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 999999999999998888876543 2579999999999996531 22333222 12234689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQR 168 (205)
Q Consensus 156 ~~~~~i~~~~~~~ 168 (205)
++|+++.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988664
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.6e-32 Score=204.41 Aligned_cols=162 Identities=30% Similarity=0.589 Sum_probs=138.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 358999999999999999999999888777777776444 4555677778889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCC-----------CccCHHHHHHHHHHhCC-cEEEEcC
Q 028686 82 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA 148 (205)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa 148 (205)
|||++++++++.+. .|+..+.... +++|+++|+||+|+.+.. ..+..+++..+++..++ +++++||
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 99999999999997 7888887654 379999999999996532 14556777888888887 9999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARDI 165 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~ 165 (205)
++|.|++++|++|.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998765
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=7.4e-30 Score=189.03 Aligned_cols=159 Identities=18% Similarity=0.245 Sum_probs=122.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEE--EEEEC-CEEEEEEEEeCCChhhhhhhh---hhhccC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR--TIELD-GKRIKLQIWDTAGQERFRTIT---TAYYRG 75 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~~ 75 (205)
..+||+++|++|||||||++++.+.. ... ++.+.++... ...+. +..+.+.+||++|++++..+. ..++++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 46899999999999999999887743 222 3333333322 22332 556789999999999987766 899999
Q ss_pred CcEEEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC------CCccCHHHHHHHHH----HhCCcE
Q 028686 76 AMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES------KRAVPTSKGQALAD----EYGIKF 143 (205)
Q Consensus 76 ~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~------~~~~~~~~~~~~~~----~~~~~~ 143 (205)
+|++|+|||++++ +++..+..|+..+.... +++|+++|+||+|+.+. ...+..++...++. ..++++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence 9999999999997 77888888888775443 57999999999998642 12344555667777 667899
Q ss_pred EEEcCCCCCCHHHHHHHHHHHH
Q 028686 144 FETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 144 ~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
+++||++ .|++++|+.+++.+
T Consensus 175 ~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 175 YLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEECTTS-THHHHHHHHHHHHT
T ss_pred EEEEech-hhHHHHHHHHHHHh
Confidence 9999999 99999999998864
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=4.6e-29 Score=179.92 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=117.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhcc
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR 74 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~ 74 (205)
|..++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .+...+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 7789999999999999999999998876555555555455555566665 579999999988764 34455654
Q ss_pred --CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 75 --GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 75 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
++|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+... ..+. .+...++..++++++++||++|.
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAKKM 150 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccc-cChh-hHHHHHHHHhCCCEEEEEcCCCC
Confidence 8999999999998654 3446666654 36899999999998542 2232 24677888889999999999999
Q ss_pred CHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDI 165 (205)
Q Consensus 153 gi~~~~~~i~~~~ 165 (205)
|++++|+++.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=3.2e-29 Score=187.79 Aligned_cols=160 Identities=16% Similarity=0.231 Sum_probs=115.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE-EEEEEEEeCCChhhhhh-hhhhhccCCcEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMGI 79 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~ 79 (205)
..+||+++|++|||||||+++|+++.+...+.++. .++.. +.+++. .+.+.+|||||++++.. ++..+++.+|++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 46899999999999999999999998877765543 44443 555543 57899999999999987 888899999999
Q ss_pred EEEEeCCChh-HHHHHHH-HHHHHHhh--cCCCCcEEEEEeCCCCCCCCCc-cCHHHHHH--------------------
Q 028686 80 LLVYDVTDES-SFNNIRN-WIRNIEQH--ASDNVNKVLVGNKADMDESKRA-VPTSKGQA-------------------- 134 (205)
Q Consensus 80 i~v~d~~~~~-s~~~~~~-~~~~i~~~--~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~-------------------- 134 (205)
++|||+++.+ ++..+.. |...+... ...++|+++|+||+|+.+.... ...+.+..
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999854 4666655 44444332 2357999999999999653210 00111111
Q ss_pred ------------HHH-Hh--CCcEEEEcCCCC------CCHHHHHHHHHHH
Q 028686 135 ------------LAD-EY--GIKFFETSAKTN------LNVEQVFFSIARD 164 (205)
Q Consensus 135 ------------~~~-~~--~~~~~~~Sa~~~------~gi~~~~~~i~~~ 164 (205)
|+. .. +++|+++||++| .||+++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111 11 567999999999 9999999999875
No 103
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=6e-30 Score=197.12 Aligned_cols=162 Identities=25% Similarity=0.314 Sum_probs=122.1
Q ss_pred cceEEEEECCC---------CCcHHHHHHHHHh---CCCCCCcccce-eeEEEEEE--------------EEECCEEEEE
Q 028686 2 LFLLRIYFERG---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIRT--------------IELDGKRIKL 54 (205)
Q Consensus 2 ~~i~i~v~G~~---------~~GKtsli~~l~~---~~~~~~~~~t~-~~~~~~~~--------------~~~~~~~~~~ 54 (205)
..+||+|+|++ |||||||+++|++ ..+...+.+|+ +.++.... ..+++..+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 46899999999 9999999999999 55655666654 33322211 1245677899
Q ss_pred EEEe-----------------------CCChhhhhhhhhhhcc---------------------CCcEEEEEEeCCCh--
Q 028686 55 QIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVYDVTDE-- 88 (205)
Q Consensus 55 ~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~-- 88 (205)
.+|| ++|++++..++..+++ ++|++|+|||++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 9999 6667777777777777 79999999999998
Q ss_pred hHHHHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 89 SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 89 ~s~~~~~~~~~~i~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
++|+.+..|+..+... ...++|+++|+||+|+.+ ...+ +++..++.. .+++++++||+++.|++++|++|.+.+.
T Consensus 178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV-ERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC-HHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc-cHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9999999999998765 335799999999999954 2222 567777766 4789999999999999999999988763
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.9e-28 Score=178.08 Aligned_cols=157 Identities=21% Similarity=0.190 Sum_probs=122.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+++|++|||||||+++|.+..+...+.++.+.++....+.+++. .+.+|||||++.+..++..++..+|++++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 3589999999999999999999999887776666665666666677774 57899999999999999999999999999
Q ss_pred EEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-------C--CcEEEEcCC
Q 028686 82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAK 149 (205)
Q Consensus 82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~ 149 (205)
|||+++ .++++.+ ..+ ...++|+++|+||+|+.+. ..++........ + ++++++||+
T Consensus 85 v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 999988 4444333 222 2246899999999999652 223333333322 2 589999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc
Q 028686 150 TNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 150 ~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
+|.|++++|++|.+.+.....+
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHhhhhhccc
Confidence 9999999999999988765443
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.6e-29 Score=199.29 Aligned_cols=158 Identities=18% Similarity=0.331 Sum_probs=120.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..+||+|+|.+|+|||||+++|.+..+... .||.+..+. .+...+ +.+.+|||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 357999999999999999999998886543 356664443 344444 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++|..+..|+..+.... .+++|++||+||+|+.+.. ..+++..... ..+++++++||++|.||+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999988777775543 3579999999999996532 2233322221 224579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 156 QVFFSIARDIKQ 167 (205)
Q Consensus 156 ~~~~~i~~~~~~ 167 (205)
++|++|.+.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.8e-27 Score=180.18 Aligned_cols=165 Identities=22% Similarity=0.176 Sum_probs=118.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh------hh----hhhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ------ER----FRTITTA 71 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~------~~----~~~~~~~ 71 (205)
..++|+|+|.+|||||||+++|++..+.....+....+.....+..++ ..+.+|||||+ +. +.. +..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence 358999999999999999999999876433223222233333444444 67999999998 32 222 234
Q ss_pred hccCCcEEEEEEeCCChhHHH--HHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH---HHHHHHHHhC--CcEE
Q 028686 72 YYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS---KGQALADEYG--IKFF 144 (205)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~~~ 144 (205)
++..+|++++|||++++.+|. ....|+..+.... ++.|+++|+||+|+.+. ..+..+ ....++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 567899999999999988765 2234666665432 47999999999999653 334433 4566777776 8999
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 145 ETSAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
++||++|.|++++|++|.+.+.+.+..
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776543
No 107
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=4.1e-28 Score=178.09 Aligned_cols=157 Identities=23% Similarity=0.283 Sum_probs=121.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC-----------hhhhhhhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY 72 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 72 (205)
+||+++|++|||||||+++|++..+...+.++.+... ..+.+. .+.+||+|| ++.+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999987766666554322 223333 589999999 67788888888
Q ss_pred ccC-CcEEEEEEeCCChhHHHHH-HHHHHH--------H-HhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC
Q 028686 73 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 141 (205)
Q Consensus 73 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (205)
++. ++++++||++.+..++..+ ..|... + ......++|+++|+||+|+.... .++++.++..++.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence 887 8888888888888888877 556542 2 22222579999999999996532 5677888888886
Q ss_pred c-------EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 142 K-------FFETSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 142 ~-------~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
+ ++++||++|.|++++|+++.+.+.+..+
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 4 7999999999999999999999876544
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=9.9e-28 Score=189.33 Aligned_cols=161 Identities=19% Similarity=0.302 Sum_probs=129.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC--CC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh-----hhhhhhhc
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS--FT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYY 73 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 73 (205)
..+||+++|++|||||||+++|+++. +. ..+.+|.+..+.. +.+++ .+.+.+||+||++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 35899999999999999999999873 22 2456677765553 34433 578999999999988 77888899
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCC-Cc----cCHHHHHHHHHHhC---CcE
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESK-RA----VPTSKGQALADEYG---IKF 143 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~~~-~~----~~~~~~~~~~~~~~---~~~ 143 (205)
+++|++|+|||++++++|+++..|...+.... .+++|+++|+||+|+.+.+ .. +..+++.+++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999987766554432 3679999999999996521 22 55577888999887 799
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHH
Q 028686 144 FETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 144 ~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+++||++ .++.++|..+++.+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 799999999887553
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3.7e-27 Score=197.34 Aligned_cols=161 Identities=19% Similarity=0.369 Sum_probs=127.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
..++|+|+|.+|||||||+++|.++.+. .+.+|.+..+. .+.+.+ +.+.+|||+|++.+..++..+++.+|++|+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999854 45677775544 344444 789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcC-CCCcEEEEEeCCCCCCCCCccCHHHHHHHHH-----HhCCcEEEEcCCCCCCHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 155 (205)
|||++++++|+.+..|+..+..... .++|++||+||+|+.+. ...+++..... ..+++++++||++|.||+
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC---CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC---CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 9999999999999998888865432 57999999999999642 22333332211 123569999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028686 156 QVFFSIARDIKQRLA 170 (205)
Q Consensus 156 ~~~~~i~~~~~~~~~ 170 (205)
++|++|.+.+.++.+
T Consensus 473 ~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999988755443
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=7.2e-28 Score=176.71 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=125.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhcc
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR 74 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~ 74 (205)
|..++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .++..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 5678999999999999999999999775555556666666667777766 679999999988764 34555664
Q ss_pred --CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 75 --GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 75 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+... ..+. ++...+++.++++++++||+++.
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 4999999999875 4556667777755 46899999999998542 2222 45677888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 028686 153 NVEQVFFSIARDIKQRL 169 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~~ 169 (205)
|++++|+++.+.+.++.
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999886654
No 111
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=6.3e-29 Score=195.44 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=122.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC---CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh---hhhhhccCCcE
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG 78 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 78 (205)
||+++|+.|||||||++++.+..... .+.||.+.++.. ++ ..+.+++|||+|+++|.. +...+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887664332 356788766653 22 347899999999999964 46889999999
Q ss_pred EEEEEeCCCh--hHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC------CccCHHHHHHHHHH----hCCcEEEE
Q 028686 79 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------RAVPTSKGQALADE----YGIKFFET 146 (205)
Q Consensus 79 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~ 146 (205)
+|+|||++++ +++..+..|+..+.... +++|+++++||+|+.+.+ +.+..++++++++. .+++++++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 44444444555554443 679999999999997532 34566667777775 67899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 147 SAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
||++ .+|.++|..+++.+.++.+
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHH
Confidence 9998 4899999999887755544
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=2.1e-27 Score=172.41 Aligned_cols=154 Identities=21% Similarity=0.197 Sum_probs=115.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------h--hhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------I--TTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~--~~~~~ 73 (205)
.++|+++|++|||||||+++|.+.... ....++.+.++....+.+++. .+.+|||||+.++.. + ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999987642 223344445566667777774 488999999864221 1 12357
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
+.+|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+.... ++...+.+++++||+++.|
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCTT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCCC
Confidence 8999999999999988876 346888777665567999999999998542211 1223467899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDIKQ 167 (205)
Q Consensus 154 i~~~~~~i~~~~~~ 167 (205)
++++|++|.+.+..
T Consensus 153 v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 153 VDVLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887643
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=5.4e-27 Score=167.62 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=107.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh-------hhhhhhhhccC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG 75 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 75 (205)
.||+++|++|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+||+||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999998743 233333444455566666664 689999999876 44556778899
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCCCCH
Q 028686 76 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV 154 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 154 (205)
+|++++|+|++++.+... .|+..+... .+.|+++|+||+|+.+. .+++.+++ ..++ +++++||+++.|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCCCh
Confidence 999999999998543322 222222222 35899999999999653 23344455 5676 8999999999999
Q ss_pred HHHHHHHHHHH
Q 028686 155 EQVFFSIARDI 165 (205)
Q Consensus 155 ~~~~~~i~~~~ 165 (205)
+++|+++.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998764
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=1.5e-26 Score=170.63 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=107.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~ 72 (205)
.++|+|+|.+|||||||+++|++..+...+.++.+.+.......+++ .+.+||||| ++.+..++..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 58999999999999999999999876555555555444333444443 589999999 77788888888
Q ss_pred ccCC---cEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC--HHHHHH-HHHHhCCcEEEE
Q 028686 73 YRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQA-LADEYGIKFFET 146 (205)
Q Consensus 73 ~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 146 (205)
++.+ |++++|+|++++.++.+.. ++..+.. .+.|+++|+||+|+.+. ..+. .+++.+ +....+++++++
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPK-GKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCG-GGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh-HHHHHHHHHHHHHHcccCCCceEEE
Confidence 8777 9999999999877776542 2233322 46899999999999652 2221 122222 222345799999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 028686 147 SAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 147 Sa~~~~gi~~~~~~i~~~~ 165 (205)
||+++.|++++|++|.+.+
T Consensus 175 Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHh
Confidence 9999999999999998875
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=2.9e-26 Score=176.69 Aligned_cols=156 Identities=16% Similarity=0.139 Sum_probs=121.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------hhhhhc-
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY- 73 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~- 73 (205)
+..++|+++|.+|||||||+++|.+..+.....|+.+.+.....+...+ ..+.+||+||.+.+.. +...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999999876555555555555555555555 6799999999887654 234555
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 74 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
..+|++++|+|+++.++.. .|...+.. .++|+++|+||+|+... ..+. .+...+++.++++++++||++|.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~-~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKK-TGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCc-cchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 5899999999999976543 35555544 36999999999998542 2222 34778888999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDIK 166 (205)
Q Consensus 153 gi~~~~~~i~~~~~ 166 (205)
|++++|+++.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988764
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=2.2e-27 Score=200.24 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=124.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEE--------EECCEEEEEEEEeCCChhhhhhhhhhhc
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI--------ELDGKRIKLQIWDTAGQERFRTITTAYY 73 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~--------~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 73 (205)
..+||+++|.+|||||||+++|.+..+...+.+|.+.++..... ..++..+.+.+||+||++.+..++..++
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l 119 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM 119 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence 46899999999999999999999999888888888877765521 1223457899999999999999999999
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
+.+|++|+|||+++. +.+..|+..+.... ++.|+++|+||+|+.+ ...+..++++.++...+++++++||++|.|
T Consensus 120 ~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 194 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNGDG 194 (535)
T ss_dssp HSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred cCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence 999999999999765 55677888888775 4699999999999975 455677888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 028686 154 VEQVFFSIARDIKQRL 169 (205)
Q Consensus 154 i~~~~~~i~~~~~~~~ 169 (205)
++++|+++.+.+.+..
T Consensus 195 i~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 195 VESIAKSLKSAVLHPD 210 (535)
T ss_dssp CTTHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999886543
No 117
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.1e-26 Score=180.59 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=119.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh----------hhh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITT 70 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~ 70 (205)
|..++|+++|.+|||||||+|+|.+........++.+.+.....+...+ ..+.+|||||.+.+.. +..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence 7889999999999999999999999876555566666667666777666 4578999999876552 223
Q ss_pred hhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686 71 AYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 71 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
.++ ..+|++++|+|+++.+....+..++ ... ++|+++|+||+|+.+.. . ...+...+.+.++++++++||
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l---~~~---~~p~ivv~NK~Dl~~~~-~-~~~~~~~l~~~lg~~~i~~SA 150 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQL---LEL---GIPCIVALNMLDIAEKQ-N-IRIEIDALSARLGCPVIPLVS 150 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHHH---HHH---TCCEEEEEECHHHHHHT-T-EEECHHHHHHHHTSCEEECCC
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHHH---Hhc---CCCEEEEEECccchhhh-h-HHHHHHHHHHhcCCCEEEEEc
Confidence 333 6899999999999876655444433 332 58999999999985421 1 123456778888999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 028686 149 KTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 149 ~~~~gi~~~~~~i~~~~~ 166 (205)
++|.|++++|+++.+.+.
T Consensus 151 ~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp GGGHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999877654
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=1.2e-25 Score=165.48 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=111.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~ 72 (205)
.++|+++|++|||||||+++|++..+ ..+.++.+.+........+. .+.+||+|| ++.+..++..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 47999999999999999999999873 23334443333323333332 478999999 66777777777
Q ss_pred ccCC---cEEEEEEeCCChhH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHhC-CcEEE
Q 028686 73 YRGA---MGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG-IKFFE 145 (205)
Q Consensus 73 ~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~ 145 (205)
++.+ +++++|+|.++..+ ...+..|+... +.|+++|+||+|+.+.. .....+++..++...+ +++++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 7766 99999999987533 33333343332 58999999999996422 2233445556666544 79999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHH
Q 028686 146 TSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
+||++|.|++++|+++.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999988753
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.3e-26 Score=177.04 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=119.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh----------hhhhhc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY 73 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 73 (205)
.+|+++|.+|||||||+|+|.+........|+.+.+.....+.+++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 37899999999999999999998765555666766777777777774 789999999876653 455666
Q ss_pred --cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 74 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
.++|++|+|+|+++.+++..+..| +.. .++|+++|+||+|+.... ....+...+...++++++++||++|
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~--~~~~~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHR--GISIDTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHT--TCEECHHHHHHHHCSCEEECBGGGT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcC--CcHHHHHHHHHHcCCCEEEEECCCC
Confidence 889999999999997766554433 322 368999999999986422 1223355677888999999999999
Q ss_pred CCHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARD 164 (205)
Q Consensus 152 ~gi~~~~~~i~~~ 164 (205)
.|++++|+++.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999876
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=2.4e-25 Score=172.86 Aligned_cols=159 Identities=18% Similarity=0.140 Sum_probs=124.4
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh------hhhhhc-
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY- 73 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~- 73 (205)
|..++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++. .+.+||+||...+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 77899999999999999999999998776566677777777777777774 489999999887655 455565
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCC
Q 028686 74 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL 152 (205)
Q Consensus 74 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (205)
.++|++++|+|+++.+. ...|+..+... ...|+++|+||+|+.+. .... .+...+.+.++++++++||++|.
T Consensus 79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKK-KGAK-IDIKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHH-HTCC-CCHHHHHHHHSSCEEECBGGGTB
T ss_pred ccCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcc-cccH-HHHHHHHHHcCCcEEEEEeCCCC
Confidence 68999999999998642 33344444443 22899999999998542 1122 23677888899999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDIKQR 168 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~ 168 (205)
|++++|+++.+.+...
T Consensus 152 gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 152 GVEELKRMIALMAEGK 167 (271)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999887543
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=8.3e-26 Score=175.21 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=115.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh------hhhhhhcc-
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR- 74 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 74 (205)
..++|+++|++|||||||+|+|.+........|+.+ +......+.. ...+.+|||||++.+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~t--v~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVT--VERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCC--CSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCc--EEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 357999999999999999999998764443334333 2233334444 5679999999998765 45566665
Q ss_pred -CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 75 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 75 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
.+|++++|+|+++.+++. .|...+.. .++|+++|+||+|+... ..+. .+...++..++++++++||++|.|
T Consensus 79 ~~~d~vi~V~D~t~~e~~~---~~~~~l~~---~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL---YLTTQLIE---TGIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH---HHHHHHHH---TCSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCCEEEEEecCCchHhHH---HHHHHHHh---cCCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 699999999999876543 45555544 46999999999998542 2222 456778888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDI 165 (205)
Q Consensus 154 i~~~~~~i~~~~ 165 (205)
++++|+++.+.+
T Consensus 151 i~el~~~i~~~~ 162 (272)
T 3b1v_A 151 VDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=8.7e-25 Score=172.55 Aligned_cols=159 Identities=16% Similarity=0.066 Sum_probs=122.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----------hhhhhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------RTITTAY 72 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~ 72 (205)
-.|+++|.+|||||||+|+|++.++.. ...+....+........+ ....+.+|||||..++ ......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~ 89 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS 89 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999988642 222222223333333444 1367999999998543 3556778
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKT 150 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 150 (205)
+..+|++++|+|++++.++.+...|++.+.. .+.|+++|+||+|+.. ......+.+..+...++ .+++++||++
T Consensus 90 l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred hhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 8899999999999998888887777887776 3589999999999963 24455667777777775 7899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~~~ 167 (205)
|.|++++|+++.+.+.+
T Consensus 166 g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 166 GANLDELVKTILKYLPE 182 (308)
T ss_dssp TBSHHHHHHHHHHHSCB
T ss_pred CCCHHHHHHHHHHhCcc
Confidence 99999999999987743
No 123
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.9e-24 Score=178.15 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=116.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCCh----------hhhhhhhh-
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITT- 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~- 70 (205)
.++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++. .+.+|||||+ +.|..+..
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 489999999999999999999998753 334455555666666777774 4899999998 45554443
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHH----HhCCcEEE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALAD----EYGIKFFE 145 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~~ 145 (205)
.+++.+|++++|+|++++.++.+. .|+..+.. .+.|+++|+||+|+.+. .....++.. .+.. ..++++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCCEEE
Confidence 478889999999999998887765 46666654 46999999999999753 223223332 2222 23589999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 146 TSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
+||++|.|++++|+.+.+.+..+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EecccCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998876543
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=8e-25 Score=164.71 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=106.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEEC-CEEEEEEEEeCCC----------hhhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAG----------QERFRTITTA 71 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g----------~~~~~~~~~~ 71 (205)
.++|+|+|.+|+|||||+++|++........++.+.+.......+. .....+.+||||| ++.+..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 4799999999999999999999986321111222111222222332 2235689999999 4455666666
Q ss_pred hccC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHHHH-------hC
Q 028686 72 YYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADE-------YG 140 (205)
Q Consensus 72 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~-------~~ 140 (205)
+++. +|++++|+|.++..+.. ...|+..+.. .+.|+++|+||+|+.+... ....+++.+.... .+
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC
Confidence 6665 78899999998753322 2334555544 4589999999999864211 0011222222222 45
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 141 IKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 141 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
.+++++||++|.|++++|++|.+.+....
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 78999999999999999999998885543
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=1.8e-25 Score=167.80 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=105.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC---CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccC----
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG---- 75 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 75 (205)
.++|+++|++|+|||||+++|.+..+.. .+.++.+.++ ..+.+.+||+||++.++..+..+++.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 5799999999999999999999987654 2344333222 33568999999999998888888877
Q ss_pred CcEEEEEEeCC-ChhHHHHHHHHHHHHHhh----cCCCCcEEEEEeCCCCCCCCCccC------HHHHHHHHHHhCCcEE
Q 028686 76 AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDESKRAVP------TSKGQALADEYGIKFF 144 (205)
Q Consensus 76 ~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piiiv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~~ 144 (205)
+|++|+|||++ ++++|..+..|+..+... ...++|+++|+||+|+.+. ..+. .+++..++...+++++
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPPSKIKDALESEIQKVIERRKKSLN 161 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc-CCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999 889999999988888654 3357999999999999653 2222 4556677777778999
Q ss_pred EEcCCCCCC
Q 028686 145 ETSAKTNLN 153 (205)
Q Consensus 145 ~~Sa~~~~g 153 (205)
++||+++.+
T Consensus 162 ~~Sa~~~~~ 170 (218)
T 1nrj_B 162 EVERKINEE 170 (218)
T ss_dssp C--------
T ss_pred ccccccccc
Confidence 999998864
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=5.6e-24 Score=176.34 Aligned_cols=156 Identities=19% Similarity=0.118 Sum_probs=100.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhh--------hhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~ 73 (205)
.++|+++|.+|+|||||+|+|++... .....++++.++....+.+++ +.+.+|||||..++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 47899999999999999999998863 234445555667667777877 569999999987765443 3367
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
+.+|++++|+|++++.++.++..+...+... .+.|+++|+||+|+.+. ... +.+.+......+++++||++|.|
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~-~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAAN-ADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTT-THH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCc-cch---hHHHHHhcCCCceEEEEECCCCC
Confidence 8999999999999988876544433333333 26999999999999653 221 22334443237899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDIK 166 (205)
Q Consensus 154 i~~~~~~i~~~~~ 166 (205)
++++|++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999886
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=5.2e-23 Score=165.55 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=119.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh---------hhhhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 73 (205)
.++|+++|.+|||||||+++|.+........+....+.....+...+ ..+.+|||||..... .....+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 47899999999999999999998774322222222223333334443 568999999975321 1122345
Q ss_pred cCCcEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCC
Q 028686 74 RGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN 151 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (205)
..+|++++|+|++++. +++....|+..+..... +.|+++|+||.|+... . ..++...++...+++++++||++|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE-E--NIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH-H--HHHHHHHHHHHTTCCCEECBTTTT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh-H--HHHHHHHHHHhcCCCeEEEeCCCC
Confidence 5799999999999877 67888889988877653 7999999999998542 1 124556667777899999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 028686 152 LNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~ 170 (205)
+|++++|+++.+.+....+
T Consensus 321 ~gi~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp BTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999998866543
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=8.5e-24 Score=175.19 Aligned_cols=162 Identities=16% Similarity=0.108 Sum_probs=118.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCEEEEEEEEeCCC----------hhhhhhhhh-
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTITT- 70 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~- 70 (205)
.++|+++|.+|+|||||+++|++... .....++++.+.....+..++. .+.+||||| ++.+..+..
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 58999999999999999999997752 2333444444444456667774 689999999 666766654
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-----CCcEEE
Q 028686 71 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIKFFE 145 (205)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~ 145 (205)
.+++.+|++++|+|+++..+ +....|+..+.. .+.|+++|+||+|+.+ ......+++.+.+... ++++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVD-KDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSC-CCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCC-CchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 37889999999999988533 222345555544 4699999999999975 3445556666655544 489999
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 146 TSAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
+||++|.|++++|+++.+.+..+...
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred EcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 99999999999999999988776544
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=2.2e-23 Score=171.99 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=115.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh---------hhhhhhhhc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY 73 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 73 (205)
-+|+++|.||||||||+|+|++.... ....|+.+.+.....+.+++. .+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999988743 333444555555667777775 478999999653 345567789
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH-HHHHHHhCC-cEEEEcCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALADEYGI-KFFETSAKTN 151 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~ 151 (205)
+.+|++++|+|+.+..+..+ .++..+.+. .+.|+++|+||+|+... . ..++ .++. ..++ +++++||++|
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAEHN 150 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence 99999999999987544432 222222222 25899999999998421 1 1223 3443 4566 7899999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc-cC--CCCCCccccccCCCCCCCC
Q 028686 152 LNVEQVFFSIARDIKQRLAD-TD--SRSEPSTIKINQPDQAGGV 192 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 192 (205)
.|++++|+++.+.+.+.... .. ....+.++.+..++..+++
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKS 194 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKS 194 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHH
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHH
Confidence 99999999999988754311 11 1223345556665555543
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=3.3e-23 Score=162.88 Aligned_cols=154 Identities=16% Similarity=0.081 Sum_probs=107.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhh--------hhhhhhhhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 73 (205)
..+|+++|.+|||||||+|+|++.++.. ...+.+..+.....+..++ ..+.+|||||..+ +......++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4579999999999999999999988642 2222222222222333333 6799999999765 445566788
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHH-HHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh-C-CcEEEEcCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-G-IKFFETSAKT 150 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~ 150 (205)
+.+|++++|+|++++.+.. ..|+ +.+.... ++.|+++|+||+|+.+.... ..+.+..+ + .+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeCCC
Confidence 9999999999998864433 2343 4554432 46999999999998642110 22223322 3 5789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028686 151 NLNVEQVFFSIARDIK 166 (205)
Q Consensus 151 ~~gi~~~~~~i~~~~~ 166 (205)
|.|++++|+++.+.+.
T Consensus 157 g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 157 ERQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcc
Confidence 9999999999987653
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=2.8e-24 Score=171.33 Aligned_cols=157 Identities=19% Similarity=0.238 Sum_probs=117.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-Cc-ccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhhhcc---
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTT-SF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYYR--- 74 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~--- 74 (205)
.+|+|+|.+|||||||+++|++..... .+ .+|..... ..+.+++ ...+.+||+||... +..+...+++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 368999999999999999999876432 22 22332222 2344443 14689999999643 3344455544
Q ss_pred CCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEc
Q 028686 75 GAMGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETS 147 (205)
Q Consensus 75 ~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~S 147 (205)
.++++|+|+|+++ +++++++..|+..+..+.. .+.|+++|+||+|+... .+....+.+.+. .+++++|
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCS
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEE
Confidence 5999999999998 7899999999999987642 47999999999998542 245566777666 6899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 028686 148 AKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 148 a~~~~gi~~~~~~i~~~~~~~ 168 (205)
|+++.|+++++++|.+.+.+.
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSC
T ss_pred CCCCcCHHHHHHHHHHHHhhC
Confidence 999999999999999887543
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=2.2e-23 Score=172.94 Aligned_cols=152 Identities=24% Similarity=0.213 Sum_probs=115.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChh-hhhh--------hhhhhc
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRT--------ITTAYY 73 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~ 73 (205)
++|+++|.||+|||||+|+|.+.+.. ....++++.++....+.+++ ..+.+|||||.. .+.. ....++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 79999999999999999999998632 34445455566666777777 568999999987 5432 234577
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
+.+|++++|+|++++.++++.. +++.+ .+.|+++|+||+|+.+. +..+++..+.. .+++++++||++|.|
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 8999999999999987776543 33333 36899999999999642 34455554432 346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDIKQ 167 (205)
Q Consensus 154 i~~~~~~i~~~~~~ 167 (205)
++++|++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 133
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=8e-23 Score=170.10 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=113.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCC-------CCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhc
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 73 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 73 (205)
|..++|+++|.+++|||||+++|.+.. ...+..+.++.+.....+.+++ ..+.+|||||+++|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 567999999999999999999999876 2233333333334334455555 5799999999999988888899
Q ss_pred cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHh----CCcEEE
Q 028686 74 RGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEY----GIKFFE 145 (205)
Q Consensus 74 ~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~----~~~~~~ 145 (205)
..+|++++|+|+++ +++++.+. .+.. .++|+++++||+|+.+.. .+...+++.+++... ++++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 99999999999988 56655543 2222 358999999999996421 122234455565554 578999
Q ss_pred EcCCCCCCHHHHHHHHHHHHH
Q 028686 146 TSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 146 ~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+||++|.|+++++++|.+.+.
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHhhc
Confidence 999999999999999998876
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.2e-23 Score=173.33 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=110.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh--------hhhhhhhhh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY 72 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~ 72 (205)
|...+|+++|.+|||||||+|+|++..+.. ..++.|.+.......+......+.+|||||.+ .+...+..+
T Consensus 1 m~~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 1 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp --CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 556799999999999999999999876531 22333333333333333333579999999985 566777888
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 151 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (205)
++.+|++++|+|+.++.++.+ .|+..+.+. .+.|+++|+||+|+...... +.++. ..+. +++++||++|
T Consensus 80 ~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 80 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp HHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBTTTT
T ss_pred HHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeCcCC
Confidence 999999999999998766543 233333222 46899999999998643211 11222 3454 7899999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCCC
Q 028686 152 LNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV 192 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (205)
.|++++++++.+.+.+... ......+.++.+...+..+++
T Consensus 150 ~gv~~L~~~i~~~l~~~~~-~~~~~~~~ki~lvG~~nvGKS 189 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPE-TKYNEEVIQFCLIGRPNVGKS 189 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCS-SCCCTTCEEEEEECSTTSSHH
T ss_pred CChHHHHHHHHHhcCcccc-ccccccCcEEEEEcCCCCCHH
Confidence 9999999999887753211 111233445555565555543
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=6.2e-24 Score=173.54 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=113.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh-------hhhhcc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TTAYYR 74 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~ 74 (205)
.++|+|+|..|+|||||+++|++..+. ....+.++.+.....+.+.+. ..+.+|||||++++..+ ...++.
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 589999999999999999999988753 233333334455555666543 27899999999876544 345788
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 75 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
.+|++++|+|+...+. ...|+..+... ++|+++|+||+|+.+... .+..+.++..++++++++||++|.|+
T Consensus 113 ~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~---~~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 113 RADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKA---EELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp SCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCC---THHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred cCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccH---HHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 9999999999944333 34566666654 689999999999975432 26667777788899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028686 155 EQVFFSIARDIKQR 168 (205)
Q Consensus 155 ~~~~~~i~~~~~~~ 168 (205)
+++|++|.+.+.+.
T Consensus 184 ~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 184 DDIGKTISEILPGD 197 (423)
T ss_dssp TTHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999887443
No 136
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=5.9e-22 Score=159.35 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=110.6
Q ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCCh---------hhhhhhhhhhccCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ---------ERFRTITTAYYRGA 76 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~~~~~~~ 76 (205)
|+++|++|||||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|. +.+...+. .+..+
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~a 258 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYS 258 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGS
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhC
Confidence 89999999999999999998875433333333345556677777 45799999996 22333333 46789
Q ss_pred cEEEEEEeCCChh--HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHh---CCcEEEEcCCCC
Q 028686 77 MGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAKTN 151 (205)
Q Consensus 77 d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~ 151 (205)
|++++|+|++++. ..+.+..|.+.+......+.|+++|+||+|+.+.......+.+..++... +.+++++||+++
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 9999999999876 56666667666665544578999999999986422111112233344554 246899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARDIKQR 168 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~ 168 (205)
.|+++++++|.+.+...
T Consensus 339 ~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQL 355 (364)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccc
Confidence 99999999999877654
No 137
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=2.1e-22 Score=161.12 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=106.9
Q ss_pred cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHh
Q 028686 34 TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQ 103 (205)
Q Consensus 34 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~ 103 (205)
+|.|.. ...+.+++ +.+.+||++|++.++.+|..++++++++|||||+++ ..++.+...|+..+..
T Consensus 179 ~T~Gi~--~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~ 254 (353)
T 1cip_A 179 KTTGIV--ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN 254 (353)
T ss_dssp CCCSEE--EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred ceeceE--EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence 345533 34455554 789999999999999999999999999999999999 5679999889988876
Q ss_pred hc-CCCCcEEEEEeCCCCCCCC--------------CccCHHHHHHHHH-----------HhCCcEEEEcCCCCCCHHHH
Q 028686 104 HA-SDNVNKVLVGNKADMDESK--------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 104 ~~-~~~~piiiv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~~ 157 (205)
.. ..++|++|++||.|+.... ..+..+++..++. ..++.++++||+++.||+++
T Consensus 255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v 334 (353)
T 1cip_A 255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV 334 (353)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence 43 2679999999999984311 1356788888876 34678999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028686 158 FFSIARDIKQRLA 170 (205)
Q Consensus 158 ~~~i~~~~~~~~~ 170 (205)
|+++.+.+.+..-
T Consensus 335 F~~v~~~i~~~~l 347 (353)
T 1cip_A 335 FDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
No 138
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=3.1e-22 Score=164.91 Aligned_cols=156 Identities=15% Similarity=0.061 Sum_probs=108.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC-------------------------------CCCCcccceeeEEEEEEEEECCE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIELDGK 50 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 50 (205)
..++|+++|.+++|||||+++|++.. ...+..+.++.+.....+..++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 35899999999999999999996542 1112224445555555555554
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC-
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR- 125 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~- 125 (205)
..+.+|||||+++|.......++.+|++|+|+|+++.. +|+...++.+.+......++| +++++||+|+...+.
T Consensus 95 -~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 95 -KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred -eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 57999999999999999999999999999999998853 222222223333322224577 899999999854221
Q ss_pred ----ccCHHHHHHHHHHhC------CcEEEEcCCCCCCHHHHHH
Q 028686 126 ----AVPTSKGQALADEYG------IKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 126 ----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~~~~ 159 (205)
....+++..++...+ ++++++||++|.|++++++
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 112334445555544 5799999999999999766
No 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.88 E-value=1.3e-21 Score=159.69 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=114.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEE------------------------CCEEEEEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL------------------------DGKRIKLQIW 57 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~------------------------~~~~~~~~i~ 57 (205)
..++|+++|.+++|||||+++|.+....... + +....... ......+.+|
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 80 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----G--YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI 80 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----E--EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccc----C--ccccceeeccccccccceecccccccccccccccccceEEEE
Confidence 4589999999999999999999986432211 1 11111000 1123679999
Q ss_pred eCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHHHHH
Q 028686 58 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALA 136 (205)
Q Consensus 58 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~ 136 (205)
||||+++|.......+..+|++++|+|+++..++.....|+..+.... ..|+++++||+|+.+.+. ....+++.++.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l 158 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFT 158 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876777777777666543 258999999999965211 11122233333
Q ss_pred HHh---CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 137 DEY---GIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 137 ~~~---~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
... +++++++||++|.|+++++++|.+.+.
T Consensus 159 ~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 159 KGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 222 478999999999999999999987653
No 140
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=4.8e-22 Score=157.03 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=106.2
Q ss_pred ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHH
Q 028686 33 ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIE 102 (205)
Q Consensus 33 ~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~ 102 (205)
.||+|. ....+.+++ +.+.+||++|++.++.+|..++++++++|+|||++ +.+++.+...|+..+.
T Consensus 152 ~~TiGi--~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 152 VPTTGI--IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp CCCCSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred CceeeE--EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 455563 334455554 88999999999999999999999999999999664 6778888888888886
Q ss_pred hhc-CCCCcEEEEEeCCCCCCCC---------------CccCHHHHHHHHH----------HhCCcEEEEcCCCCCCHHH
Q 028686 103 QHA-SDNVNKVLVGNKADMDESK---------------RAVPTSKGQALAD----------EYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 103 ~~~-~~~~piiiv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~ 156 (205)
... ..++|+++++||+|+.+.. ..+..+++.+++. ..++.++++||+++.||+.
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~ 307 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRF 307 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHH
Confidence 543 2679999999999985421 1456778877742 3457889999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028686 157 VFFSIARDIKQRLA 170 (205)
Q Consensus 157 ~~~~i~~~~~~~~~ 170 (205)
+|..+.+.+.+.+-
T Consensus 308 vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 308 VFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhH
Confidence 99999999987543
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=3.1e-21 Score=157.74 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=106.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC---CCCCccc--ceeeEEEEEEEEE-------------C--C----EEEEEEEEe
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS---FTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIKLQIWD 58 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~~i~D 58 (205)
.++|+++|..++|||||+++|.+.. +..+..+ |....+....+.. + + ....+.+||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 5899999999999999999998543 3333334 4444444433321 1 1 136899999
Q ss_pred CCChhhhhhhhhhhccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHH
Q 028686 59 TAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQ 133 (205)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~ 133 (205)
+||+++|.......+..+|++|+|+|+++ +++++.+..| ... ...|+++++||+|+.+.+. ....+++.
T Consensus 88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 99999998888888889999999999984 5566655432 222 2258999999999976432 23356666
Q ss_pred HHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 134 ALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 134 ~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 76664 3578999999999999999999987654
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=1e-22 Score=168.22 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=103.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh--------hhc
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT--------AYY 73 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~~ 73 (205)
.++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||..++...+. .++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 478999999999999999999987542 33345555555555667777 5589999999866544333 357
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 74 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
..+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+.+... .. ....+. .+.+++++||++|.|
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~-~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQL-IT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGG-ST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchh-hH--HHHHhc--cCCcEEEEECCCCCC
Confidence 88999999999998766554 34555542 379999999999965321 11 111111 346899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028686 154 VEQVFFSIARDIKQR 168 (205)
Q Consensus 154 i~~~~~~i~~~~~~~ 168 (205)
+++++++|.+.+...
T Consensus 371 i~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 371 IDSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887543
No 143
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=1.1e-21 Score=166.35 Aligned_cols=157 Identities=25% Similarity=0.309 Sum_probs=110.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCC-----Cc------ccceeeEEEEEE--EEE---CCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT-----SF------ITTIGIDFKIRT--IEL---DGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~-----~~------~~t~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~ 64 (205)
..+|+++|..++|||||+++|+... +.. .+ ....|.+..... +.+ ++..+.+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4689999999999999999998732 111 00 011222222222 222 45678999999999999
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--- 141 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 141 (205)
|...+...++.+|++|+|+|+++..++.....|...+. .++|+++++||+|+.+.+ ..+...++...++.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD---PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc---HHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998766666666665543 468999999999996532 23334566666675
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 142 KFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 142 ~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.++++||++|.|++++|+++.+.+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred eEEEeecccCCCchhHHHHHhhcCC
Confidence 4899999999999999999988764
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=6.4e-22 Score=152.50 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=108.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC-CCCCcccc-eeeEEEEEEEEECCEEEEEEEEeCCChhhhhh-----------h
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------I 68 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~ 68 (205)
..++|+|+|.+|||||||+++|++.. +...+.++ .+.+.....+.+++ ..+.+|||||..++.. .
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 35899999999999999999999887 44444343 33344444555666 4689999999865432 2
Q ss_pred hhhhccCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhcCCCCcEEEEEe-CCCCCCCCCccCH-------HHHHHHHHHh
Q 028686 69 TTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGN-KADMDESKRAVPT-------SKGQALADEY 139 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~n-K~Dl~~~~~~~~~-------~~~~~~~~~~ 139 (205)
...+++.+|++++|+|+++... ...+..|+..+.... ...|+++++| |+|+... .+.. ++++.++...
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHh
Confidence 2336788999999999986222 222323333332211 1356776666 9999642 2221 3344566665
Q ss_pred CCcE-----EEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 140 GIKF-----FETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 140 ~~~~-----~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
+..+ +++||+++.|++++|+++.+.+....
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5332 68999999999999999999887643
No 145
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=7.1e-21 Score=144.93 Aligned_cols=162 Identities=16% Similarity=0.143 Sum_probs=109.4
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEEEECCEEEEEEEEeCCCh-----------hhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQ-----------ERFRTI 68 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~~~ 68 (205)
..++|+|+|.+|||||||+++|++..+.....+ +.+.+.....+.+++ ..+.+|||||. ..+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 358999999999999999999999887554444 334444555566666 46899999993 334455
Q ss_pred hhhhccCCcEEEEEEeCCChhH--HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC------HHHHHHHHHHhC
Q 028686 69 TTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP------TSKGQALADEYG 140 (205)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~------~~~~~~~~~~~~ 140 (205)
+...++.+|++++|+|+++... ...+..+...+... ...|+++|+||+|+... ..+. .+.++.+....+
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~-~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGD-TNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC-------------CHHHHHHHHHHS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCc-ccHHHHHHhchHHHHHHHHHcC
Confidence 5566678999999999876432 22232233322222 23699999999998642 2121 246778888888
Q ss_pred CcEEEEcCCCC-----CCHHHHHHHHHHHHHHH
Q 028686 141 IKFFETSAKTN-----LNVEQVFFSIARDIKQR 168 (205)
Q Consensus 141 ~~~~~~Sa~~~-----~gi~~~~~~i~~~~~~~ 168 (205)
..++.++...+ .++.++|..+.+.+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88888877654 68899999888877653
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=4.3e-21 Score=158.25 Aligned_cols=160 Identities=20% Similarity=0.123 Sum_probs=108.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh------------h
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------------T 69 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------~ 69 (205)
.++|+++|++|||||||+|+|++.... ....++++.+.....+.+++. .+.+|||+|..+.... .
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHH
Confidence 479999999999999999999987642 233344444555566777875 5789999997533221 1
Q ss_pred hhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHH-HHHH----HhCCcEE
Q 028686 70 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALAD----EYGIKFF 144 (205)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~ 144 (205)
..++..+|++++|+|+++..+..+. .+...+.. .+.|+++|+||+|+.+. .....++.. .+.. ..+++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999886665542 22333332 46899999999999652 223333332 2222 2357899
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 145 ETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
++||++|.|++++|+.+.+.+..+.
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999998887654
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=3.9e-24 Score=178.95 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=116.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
+..+|+++|.+++|||||+++|.+..+.....++++.++....+.+++ ...+.+|||||++.|..++..++..+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 357899999999999999999998766555555555444444444421 1368999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHh--CCcEEEEcCCCCCCHHH
Q 028686 82 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEY--GIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~ 156 (205)
|+|+++...... .+.+......++|+++++||+|+.+.......++...+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt----~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQT----VESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHH----HHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHH----HHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999998543322 23333333356899999999999754433333333332 1122 25899999999999999
Q ss_pred HHHHHHHHHH
Q 028686 157 VFFSIARDIK 166 (205)
Q Consensus 157 ~~~~i~~~~~ 166 (205)
+|+++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987764
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=2.7e-21 Score=163.71 Aligned_cols=157 Identities=22% Similarity=0.297 Sum_probs=111.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCC-----Ccccc------eeeEEE--EEEEEE---CCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT-----SFITT------IGIDFK--IRTIEL---DGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~-----~~~~t------~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~~ 64 (205)
..+|+++|..++|||||+++|+... +.. ....+ .|.+.. ...+.+ ++..+.+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4689999999999999999998631 111 00000 111111 111222 45568899999999999
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC---
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--- 141 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 141 (205)
|.......++.+|++++|+|+++..++.....|..... .++|+++++||+|+.+.+ ..+...++...+++
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCCGG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCCcc
Confidence 99888999999999999999999877766666665543 469999999999996532 22334556666665
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 142 KFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 142 ~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+++++||++|.|++++|+++.+.+.
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999987764
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=9.9e-22 Score=150.47 Aligned_cols=165 Identities=14% Similarity=0.046 Sum_probs=106.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccc--eeeEEEEEEEEECCEEEEEEEEeCCChh--------hhhhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITT--IGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTA 71 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 71 (205)
..+||+|+|.+|||||||+|+|++........++ .........+..++ ..+.+|||||.. .+......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4689999999999999999999998764433222 22223333445555 568999999962 22222222
Q ss_pred h----ccCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-----cCHHHHHHHHHHhCC
Q 028686 72 Y----YRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-----VPTSKGQALADEYGI 141 (205)
Q Consensus 72 ~----~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~ 141 (205)
. ...+|++++|+|+++... ...+..|+..+......+.|+++++||.|+.+.... ...+.++.+....+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC
Confidence 3 389999999999985321 122223333332221135899999999999642211 011446777888888
Q ss_pred cEEEEcCCC-----CCCHHHHHHHHHHHHHHH
Q 028686 142 KFFETSAKT-----NLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 142 ~~~~~Sa~~-----~~gi~~~~~~i~~~~~~~ 168 (205)
.++.+++.. +.|++++++.+.+.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 178 RVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 887777655 478999999998888764
No 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=2.1e-22 Score=156.42 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=93.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCC-CCc-------ccceeeEEEEEEEEECCEEEEEEEEeCCChh-------hhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-------RFR 66 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~ 66 (205)
..++|+|+|.+|+|||||+|+|++.... ..+ .+|.+.+.....+..++..+.+.+|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3589999999999999999998876643 333 5667777776666666766799999999973 122
Q ss_pred hhh-------hhhcc-------------CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-C
Q 028686 67 TIT-------TAYYR-------------GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-R 125 (205)
Q Consensus 67 ~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~ 125 (205)
.+. ..++. .+|+++++++.+...-...-..++..+.. ++|+++|+||+|+.... .
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHH
Confidence 222 22222 37789999877652211112234444433 69999999999985311 1
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 126 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
....+.+.+.....+++++++|+.++.|+++++++|.+.+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1112334445556789999999999999999998887643
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.86 E-value=7.3e-21 Score=155.64 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=112.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC---CCCCccc--ceeeEEEEEEEEE-------------C--C----EEEEEEEEe
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS---FTTSFIT--TIGIDFKIRTIEL-------------D--G----KRIKLQIWD 58 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~~~i~D 58 (205)
.++|+++|..++|||||+++|.+.. +..+..+ |....+....+.. + + ....+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 4899999999999999999998643 2333334 4444444433321 1 1 136799999
Q ss_pred CCChhhhhhhhhhhccCCcEEEEEEeCCC----hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHHHHH
Q 028686 59 TAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQ 133 (205)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~ 133 (205)
|||+++|.......+..+|++|+|+|+++ +++.+.+..| ... ...|+++++||+|+.+.+. ....+++.
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII--GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc--CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 99999998887778889999999999984 4566555432 222 1258999999999965221 12234455
Q ss_pred HHHHH---hCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 134 ALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 134 ~~~~~---~~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 55554 3579999999999999999999987654
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=2.1e-21 Score=161.81 Aligned_cols=151 Identities=14% Similarity=0.072 Sum_probs=96.9
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC--CC-----------------------------CCcccceeeEEEEEEEEECCE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS--FT-----------------------------TSFITTIGIDFKIRTIELDGK 50 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 50 (205)
..+||+++|.+++|||||+++|++.. +. .+..+.+..+.....+.. .
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~ 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--H 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC--S
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec--C
Confidence 45899999999999999999997652 11 011112222222223333 3
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHH------HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWIRNIEQHASDNVNKVLVGNKADMDESK 124 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~ 124 (205)
...+.+|||||+++|......+++.+|++|+|+|+++.+++.. ....+..+.. . ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~-~~~~iIvviNK~Dl~~~- 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L-GIHNLIIAMNKMDNVDW- 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-T-TCCCEEEEEECGGGGTT-
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-c-CCCcEEEEEECcCcccc-
Confidence 4679999999999999999999999999999999998754432 1112222222 1 22469999999999652
Q ss_pred CccCHHH----HHHHHHHh-----CCcEEEEcCCCCCCHHHH
Q 028686 125 RAVPTSK----GQALADEY-----GIKFFETSAKTNLNVEQV 157 (205)
Q Consensus 125 ~~~~~~~----~~~~~~~~-----~~~~~~~Sa~~~~gi~~~ 157 (205)
.....++ +..+.... +++++++||++|.|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2222232 33333333 368999999999999853
No 153
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=2.2e-22 Score=165.71 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=106.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC--CCCCCc-----------------------------ccceeeEEEEEEEEECCE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG--SFTTSF-----------------------------ITTIGIDFKIRTIELDGK 50 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 50 (205)
..++|+++|.+++|||||+++|++. .+.... .+.++.+.....+...
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-- 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-- 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS--
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC--
Confidence 4589999999999999999999874 232110 1222223333333333
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhh----cCCCC-cEEEEEeCCCCCCCCC
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH----ASDNV-NKVLVGNKADMDESKR 125 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~-piiiv~nK~Dl~~~~~ 125 (205)
...+.+|||||+++|......++..+|++|+|+|+++ .+|+.+..|......+ ...++ |+++++||+|+.+...
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 3679999999999999989999999999999999998 6777554333322221 11244 6899999999965221
Q ss_pred -----ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHHH
Q 028686 126 -----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 126 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~ 159 (205)
....+++..++...+ ++++++||++|.|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 122455667777665 6799999999999986654
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=3.1e-22 Score=165.84 Aligned_cols=179 Identities=17% Similarity=0.129 Sum_probs=110.7
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCC--------hhhhhhhhhhh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTITTAY 72 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~ 72 (205)
|...+|+|+|.+|||||||+|+|.+..+. ....+.|.+.......+......+.+||||| ++.+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 56679999999999999999999987653 1223344444444445544456799999999 77788888899
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC-CcEEEEcCCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTN 151 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (205)
++.+|++++|+|..+.-+ ....|+..+... .+.|+++|+||+|+.+.. +...++. ..+ ...+++||++|
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~-----~~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR-----ANIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCTTTC
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh-----hhHHHHH-HcCCCceEEeecccc
Confidence 999999999999876332 222333333332 569999999999985421 1111111 223 25679999999
Q ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCccccccCCCCCCC
Q 028686 152 LNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGG 191 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (205)
.|+.++++.+.+.+.... .........++.+...+..++
T Consensus 170 ~gv~~L~~~i~~~l~~~~-~~~~~~~~~ki~ivG~~~vGK 208 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIP-ETKYNEEVIQFCLIGRPNVGK 208 (456)
T ss_dssp TTHHHHHHHHHTTGGGSC-SSCCCTTCEEEEEECSTTSSH
T ss_pred cchHHHHHHHHhhccccc-ccccccccceeEEecCCCCCH
Confidence 999999999987664321 111223334455555444443
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.9e-22 Score=145.02 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=86.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC---CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccC----
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG---- 75 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~---- 75 (205)
.++|+++|++|||||||+++|.+..+.. .+.++.+.++ ..+.+.+||+||++.+...+..++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 4799999999999999999999987543 1222222111 33578999999999888777777766
Q ss_pred CcEEEEEEeCC-ChhHHHHHHHHHHHHHhhc----CCCCcEEEEEeCCCCCC
Q 028686 76 AMGILLVYDVT-DESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDE 122 (205)
Q Consensus 76 ~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~----~~~~piiiv~nK~Dl~~ 122 (205)
+|++++|||++ +++++..+..|+..+.... ..++|+++|+||+|+.+
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 8999999998888876542 35799999999999965
No 156
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=161.70 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=93.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC-CCCCc--------ccceeeEEEEEEEEECCEEEEEEEEeCCCh-------hhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS-FTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ERFR 66 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~-~~~~~--------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~ 66 (205)
.++|+|+|++|+|||||+++|++.. +...+ .+|.+..+....+..++..+.+.+|||||. +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 4789999999999999999987654 22222 245555555455555677788999999998 5566
Q ss_pred hhhh-------hhccCCcE-----------EEEEEeCCC-hhHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686 67 TITT-------AYYRGAMG-----------ILLVYDVTD-ESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRA 126 (205)
Q Consensus 67 ~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~ 126 (205)
.+.. .+++.+++ .+++|++++ ..++..+. .|+..+ ..++|+++|+||+|+... ..
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~-~e 191 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL-KE 191 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH-HH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH-HH
Confidence 6554 55544332 235555554 44555554 244433 257999999999998642 22
Q ss_pred cCH--HHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 028686 127 VPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 171 (205)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~~ 171 (205)
+.. +++..++..++++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 222 456666777789999999999999 99999999988776553
No 157
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.1e-20 Score=148.58 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=106.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChh-h--------hhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-R--------FRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~ 72 (205)
..+|+++|++|+|||||+|+|++..+.. ...+....+.....+..++ ..+.+|||||.. . +......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3579999999999999999999987531 1222111111222233344 578999999986 2 33344667
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEcCCCC
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN 151 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (205)
++.+|++++|+|.++ +.....|+..... ..+.|+++++||.|+.. ......+.+..+...++. .++++||+++
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 889999999999976 2222233332222 24689999999999854 122233455566666675 7999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028686 152 LNVEQVFFSIARDIK 166 (205)
Q Consensus 152 ~gi~~~~~~i~~~~~ 166 (205)
.|++++++.+.+.+.
T Consensus 160 ~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 160 LNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999987653
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=3e-21 Score=159.01 Aligned_cols=152 Identities=19% Similarity=0.095 Sum_probs=103.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CCC----------cccce---------------------eeEEEEEEEEECC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF--TTS----------FITTI---------------------GIDFKIRTIELDG 49 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~--~~~----------~~~t~---------------------~~~~~~~~~~~~~ 49 (205)
.++|+++|.+++|||||+++|++... ... ..++. ..+.....+..++
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 48999999999999999999987541 110 11111 1111122233333
Q ss_pred EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCCc--
Q 028686 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-NKVLVGNKADMDESKRA-- 126 (205)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piiiv~nK~Dl~~~~~~-- 126 (205)
..+.+|||||+++|......++..+|++|+|+|+++... .....|+..+... ++ |+++|+||+|+.+.+..
T Consensus 104 --~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 104 --RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp --EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred --ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 578999999999998888888999999999999998532 2233344444332 34 58999999999652211
Q ss_pred -cCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHHHHH
Q 028686 127 -VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFFS 160 (205)
Q Consensus 127 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~~~~ 160 (205)
...+++..++...+ ++++++||++|.|+++++..
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 12345566677776 78999999999999985443
No 159
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=2.6e-20 Score=147.64 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=102.2
Q ss_pred cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHh
Q 028686 34 TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQ 103 (205)
Q Consensus 34 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~ 103 (205)
+|.|... ..+.++ .+.+.+||++|++.++.+|..++++++++|+|||++ +.+++.+...|+..+..
T Consensus 147 ~TiGi~~--~~~~~~--~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 147 KTTGIHE--YDFVVK--DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCSCEE--EEEESS--SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred ceeeeEE--EEEEee--eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 4455333 333443 478999999999999999999999999999999998 77889999888888876
Q ss_pred hc-CCCCcEEEEEeCCCCCCC--------------CCccCHHHHHHHHH-Hh--------------------------CC
Q 028686 104 HA-SDNVNKVLVGNKADMDES--------------KRAVPTSKGQALAD-EY--------------------------GI 141 (205)
Q Consensus 104 ~~-~~~~piiiv~nK~Dl~~~--------------~~~~~~~~~~~~~~-~~--------------------------~~ 141 (205)
.. ..++|++|++||.|+... ......+++.+++. .+ .+
T Consensus 223 ~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i 302 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKV 302 (340)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEE
T ss_pred hhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcce
Confidence 53 367999999999998431 11124566655542 33 37
Q ss_pred cEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 142 KFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 142 ~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
.++++||++..+|+.+|..+.+.+.+
T Consensus 303 y~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 303 YTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999988
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=7.8e-21 Score=161.21 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=110.3
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCC----cccceeeEEEEEEE------------EECCEEEEEEEEeCCChhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTS----FITTIGIDFKIRTI------------ELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~ 65 (205)
+..+|+++|++++|||||+++|.+..+... ..++.+..+..... .++.....+.+|||||+++|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 468999999999999999999987654321 22333322221110 00001124899999999999
Q ss_pred hhhhhhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc-----------CHH-
Q 028686 66 RTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-----------PTS- 130 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~-----------~~~- 130 (205)
..++...++.+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+.+..... ..+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999999 777766542 222 469999999999996421100 000
Q ss_pred ----------HHHHHHHHhC---------------CcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 131 ----------KGQALADEYG---------------IKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 131 ----------~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
+......+.+ ++++++||++|.|++++++++...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 1111111111 47999999999999999999998776443
No 161
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=4.2e-22 Score=165.28 Aligned_cols=154 Identities=16% Similarity=0.076 Sum_probs=94.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC--CCCC-----------------------------CcccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 51 (205)
.++|+++|..++|||||+++|+.. .+.. +....++.+.....+.+++
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~-- 120 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-- 120 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS--
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC--
Confidence 479999999999999999999752 1210 0011111222222344444
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-- 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~-- 125 (205)
..+.+|||||+++|.......+..+|++|+|+|+++. ++|+...+|.+.+......++| +++++||+|+.+...
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 5789999999999998888889999999999999985 3554444444444433335687 999999999954221
Q ss_pred ---ccCHHHHHHHHHHh-------CCcEEEEcCCCCCCHHHHH
Q 028686 126 ---AVPTSKGQALADEY-------GIKFFETSAKTNLNVEQVF 158 (205)
Q Consensus 126 ---~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~ 158 (205)
....+++..++... +++++++||++|.|+++++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11233466666665 3569999999999998866
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=1.5e-21 Score=159.41 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=101.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC--------CCCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG--------SFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (205)
..++|+++|.+++|||||+++|++. .+... .....+.++......+......+.+|||||+++|.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4589999999999999999999873 11110 00011211222222333333678999999999998
Q ss_pred hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC---
Q 028686 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG--- 140 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--- 140 (205)
......+..+|++|+|+|+++... .....|+..+.. .++| +++++||+|+.+... +...+++.+++...+
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG 165 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence 888889999999999999988643 344455555544 3578 889999999964111 112335566666665
Q ss_pred --CcEEEEcCCCCCC
Q 028686 141 --IKFFETSAKTNLN 153 (205)
Q Consensus 141 --~~~~~~Sa~~~~g 153 (205)
++++++||++|.|
T Consensus 166 ~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 166 DEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCEEECCHHHHHH
T ss_pred cCCCEEEccHHHhhh
Confidence 6899999999987
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.84 E-value=6.2e-21 Score=155.41 Aligned_cols=160 Identities=18% Similarity=0.122 Sum_probs=107.5
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC-------CCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS-------FTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 67 (205)
..+||+++|.+++|||||+++|++.. +... .....+.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999998741 1100 000112222222233333336789999999999988
Q ss_pred hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC----
Q 028686 68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG---- 140 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---- 140 (205)
.....+..+|++|+|+|+++..... ...++..+.. .++| +++++||+|+.+... +...+++.+++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 8888999999999999999843222 2222333332 3588 689999999964111 112345666777665
Q ss_pred -CcEEEEcCCCCCC----------HHHHHHHHHHHH
Q 028686 141 -IKFFETSAKTNLN----------VEQVFFSIARDI 165 (205)
Q Consensus 141 -~~~~~~Sa~~~~g----------i~~~~~~i~~~~ 165 (205)
++++++||++|.| ++++++.+.+.+
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 778887776654
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=3.2e-22 Score=165.66 Aligned_cols=151 Identities=14% Similarity=0.065 Sum_probs=102.6
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC--CCCCC-----------------------------cccceeeEEEEEEEEECCE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDGK 50 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~--~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 50 (205)
..++|+++|.+++|||||+++|++. .+... ..+.+..+.....+..++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~- 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence 3589999999999999999999864 12110 001122222222333333
Q ss_pred EEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHH---HHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCC
Q 028686 51 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVN-KVLVGNKADMDES 123 (205)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~ 123 (205)
..+.+|||||+++|.......+..+|++|+|+|+++.. +|+ ....++..+.. .++| +++++||+|+.+.
T Consensus 85 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 -YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp -EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTT
T ss_pred -ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccC
Confidence 67999999999999998889999999999999999752 332 22222222222 3566 8999999999631
Q ss_pred CC---ccCHHHHHHHHHHhC-----CcEEEEcCCCCCCHHHH
Q 028686 124 KR---AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQV 157 (205)
Q Consensus 124 ~~---~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 157 (205)
+. ....+++..++...+ ++++++||++|.|+.++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11 122345566666665 68999999999999755
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=6.5e-23 Score=170.30 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=107.7
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEE
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL 81 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (205)
+..+|+++|.+++|||||+++|.+..+.....++++.+.....+.+++ ..+.+|||||+++|..++...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999988665443333333222222333444 468999999999999999999999999999
Q ss_pred EEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH---HHHHHHhC--CcEEEEcCCCCCC
Q 028686 82 VYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG---QALADEYG--IKFFETSAKTNLN 153 (205)
Q Consensus 82 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~~Sa~~~~g 153 (205)
|+|+++ +++.+.+ ..+.. .++|+++++||+|+.+.+.....++. ..+...++ ++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 999988 4444433 22222 46899999999999753211111110 01112222 6899999999999
Q ss_pred HHHHHHHHHH
Q 028686 154 VEQVFFSIAR 163 (205)
Q Consensus 154 i~~~~~~i~~ 163 (205)
++++|+++..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999874
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=7.5e-21 Score=153.30 Aligned_cols=147 Identities=9% Similarity=0.008 Sum_probs=107.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEe
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD 84 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (205)
+|+++|.+++|||||+++|+ ....|....+ ..+..++ ..+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 1122222222 2333333 569999999999998777788899999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCCcE-EEEEe-CCCCCCCCCcc--CHHHHHHHHHHhC---CcEEE--EcCCC---CC
Q 028686 85 VTDESSFNNIRNWIRNIEQHASDNVNK-VLVGN-KADMDESKRAV--PTSKGQALADEYG---IKFFE--TSAKT---NL 152 (205)
Q Consensus 85 ~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~n-K~Dl~~~~~~~--~~~~~~~~~~~~~---~~~~~--~Sa~~---~~ 152 (205)
+. ..+.....|+..+.. .++|. ++++| |+|+ +. ..+ ..+++++++...+ +++++ +||++ +.
T Consensus 93 -~~-g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred -CC-CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 43 345555666665544 35777 88899 9998 42 211 1245555555443 78999 99999 99
Q ss_pred CHHHHHHHHHHHHHHH
Q 028686 153 NVEQVFFSIARDIKQR 168 (205)
Q Consensus 153 gi~~~~~~i~~~~~~~ 168 (205)
|++++++.|.+.+...
T Consensus 166 gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 166 GVDELKARINEVAEKI 181 (370)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccc
Confidence 9999999999887654
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=1.6e-20 Score=157.54 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=81.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC------------------C----CcccceeeEEEEEEEEECCEEEEEEEEeCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT------------------T----SFITTIGIDFKIRTIELDGKRIKLQIWDTA 60 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~------------------~----~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 60 (205)
..+|+|+|.+|+|||||+++|+..... . +..+..........+.+.+ +.+.+||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTP 90 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTP 90 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECC
Confidence 468999999999999999999621100 0 0001111112223344444 679999999
Q ss_pred ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
|+.++......+++.+|++|+|+|+++..+......| ..+.. .++|+++|+||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 9999999999999999999999999987665555444 33332 4689999999999864
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-20 Score=161.14 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=101.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc-------------------------------ccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~~~ 51 (205)
.+||+++|.+++|||||+++|++....... .+.+..+.....+...+
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~-- 244 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-- 244 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS--
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC--
Confidence 589999999999999999999876321110 11222222223333433
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhcCCCC-cEEEEEeCCCCCCCCCcc
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNV-NKVLVGNKADMDESKRAV 127 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~-piiiv~nK~Dl~~~~~~~ 127 (205)
..+.||||||+++|.......++.+|++|+|+|+++.. +|....++...+......++ |++||+||+|+.+.. ..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~-~~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS-QQ 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC-HH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh-HH
Confidence 57899999999999999999999999999999998742 11112223333322222344 599999999996521 11
Q ss_pred C----HHHHHHHHHHhC-----CcEEEEcCCCCCCHHHH
Q 028686 128 P----TSKGQALADEYG-----IKFFETSAKTNLNVEQV 157 (205)
Q Consensus 128 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~~ 157 (205)
. .+++..+....+ ++++++||++|.|++++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 233444444444 68999999999999976
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=7.5e-20 Score=136.20 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=98.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh----------hhhhhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTITTAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~ 72 (205)
..+|+++|++|||||||+++|++..+...+.++.|.......+.+++ .+.+||+||.. .+......+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 36899999999999999999998764444455555444333333333 47899999973 233333334
Q ss_pred c---cCCcEEEEEEeCCChhHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-CccCHHHHHHHHHHhC--CcEE
Q 028686 73 Y---RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG--IKFF 144 (205)
Q Consensus 73 ~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~~ 144 (205)
+ ..++++++++|++++.++.. +..|+. . .++|+++++||+|+.... .+...+.+..++...+ +.++
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 176 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence 3 46899999999988655432 222322 1 358999999999985421 1111345555555554 5788
Q ss_pred EEcCCCCCCHHHHHHHHHHHHHH
Q 028686 145 ETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 145 ~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
++|++++.|+++++++|.+.+.+
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEeecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999877543
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=5.5e-20 Score=163.31 Aligned_cols=160 Identities=17% Similarity=0.094 Sum_probs=107.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCC-------CCC-------CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGS-------FTT-------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 67 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~-------~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 67 (205)
..++|+++|.+++|||||+++|.+.. +.. ....+.|.++....+.++.....+.+|||||+++|..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 35899999999999999999998741 000 0112223322222233333446789999999999998
Q ss_pred hhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCCCCC--ccCHHHHHHHHHHhC----
Q 028686 68 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG---- 140 (205)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~---- 140 (205)
.....+..+|++|+|+|+++... .+...|+..+.. .++| +++++||+|+.+... +...+++..++...+
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence 88889999999999999998532 233344444443 2588 789999999964211 112345666776665
Q ss_pred -CcEEEEcCCCC--------CCHHHHHHHHHHHH
Q 028686 141 -IKFFETSAKTN--------LNVEQVFFSIARDI 165 (205)
Q Consensus 141 -~~~~~~Sa~~~--------~gi~~~~~~i~~~~ 165 (205)
++++++||++| .|++++++.|.+.+
T Consensus 451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 68999999999 45777777776544
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=5.8e-19 Score=136.17 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=84.2
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhcc-----
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR----- 74 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 74 (205)
|..++|+++|.+|+|||||+++|++.... ....+..........+..++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 45699999999999999999999998742 22222222334444556666 47999999999776554444332
Q ss_pred ----CCcEEEEEEeCCChhHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686 75 ----GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDN--VNKVLVGNKADMDE 122 (205)
Q Consensus 75 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piiiv~nK~Dl~~ 122 (205)
.+|++++|++++... +... ..|++.+......+ .|+++|+||+|+.+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999988754 4333 35777777655433 49999999999854
No 172
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.80 E-value=4.4e-19 Score=142.34 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=108.2
Q ss_pred HHHHHhCCCCCC-------cccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC-----
Q 028686 20 LLRFSDGSFTTS-------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----- 87 (205)
Q Consensus 20 i~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----- 87 (205)
+.++....+.++ ..+|.|... ..+.+++ +.+.+||++|++.++..|..++++++++|||||+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l 241 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence 556665555443 456777554 4455554 789999999999999999999999999999999999
Q ss_pred -----hhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCCCC---------------CccCHHHHHHHHH---------
Q 028686 88 -----ESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESK---------------RAVPTSKGQALAD--------- 137 (205)
Q Consensus 88 -----~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~Dl~~~~---------------~~~~~~~~~~~~~--------- 137 (205)
..++.+...|+..+.... ..++|++|++||.||.... ..+..+++..++.
T Consensus 242 ~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~ 321 (362)
T 1zcb_A 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD 321 (362)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSS
T ss_pred cccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcc
Confidence 779999999999887643 3679999999999985311 1256777777652
Q ss_pred --HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 138 --EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 138 --~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
..++.++++||+++.||+++|+++.+.+.+.+-
T Consensus 322 ~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 322 QQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp CC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999876553
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=2.7e-20 Score=146.00 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=101.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC------Cccccee----------------------eE---------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTT------SFITTIG----------------------ID--------------- 39 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~------~~~~t~~----------------------~~--------------- 39 (205)
.++|+|+|.+|||||||+|+|++..+.+ ...|+.. .+
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999987632 1122200 00
Q ss_pred --------EEEEEEEECCEEEEEEEEeCCChh-------------hhhhhhhhhccCCcEEE-EEEeCCChhHHHHHHHH
Q 028686 40 --------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNIRNW 97 (205)
Q Consensus 40 --------~~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 97 (205)
.....+... ....+.+|||||.. .+..+...+++.++.++ +|+|+++..+......|
T Consensus 106 ~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 106 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp STTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred cCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000000000 02568999999963 34566777888888776 79999875443333334
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH--hC-CcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 98 IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE--YG-IKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 98 ~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
+..+. ..+.|+++|+||+|+.+... ...+.++..... .+ .+++++||+++.|++++|+++.+...
T Consensus 185 ~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 185 AKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp HHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred HHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 44443 24689999999999965322 222222211001 12 36789999999999999999987443
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.80 E-value=3.3e-21 Score=163.86 Aligned_cols=144 Identities=19% Similarity=0.121 Sum_probs=80.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--C-----------------------------CCCcccceeeEEEEEEEEECCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 51 (205)
.++|+++|.+++|||||+++|++.. + ..+..++++.+.....+..+ .
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~--~ 254 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD--K 254 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC--C
Confidence 4799999999999999999996421 0 01112223333333333333 4
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCC
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADM 120 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl 120 (205)
..+.||||||+++|.......+..+|++|+|+|+++. ++.+.+ ..+.. .++| +++|+||+|+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~---lgip~iIvviNKiDl 327 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA---LGISEIVVSVNKLDL 327 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH---SSCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH---cCCCeEEEEEecccc
Confidence 6789999999999988888889999999999999853 333222 22222 3465 8999999999
Q ss_pred CCCCCcc---CHHHHHHHH-HHhC-----CcEEEEcCCCCCCHH
Q 028686 121 DESKRAV---PTSKGQALA-DEYG-----IKFFETSAKTNLNVE 155 (205)
Q Consensus 121 ~~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~ 155 (205)
.+..... ..+++..+. ...+ ++++++||++|.|+.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 6522111 123334444 3344 379999999999998
No 175
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.79 E-value=3.5e-19 Score=142.47 Aligned_cols=121 Identities=14% Similarity=0.210 Sum_probs=96.2
Q ss_pred EEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhc-CCCCcEEEEEeCC
Q 028686 50 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKA 118 (205)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~ 118 (205)
+.+.+.+||++|++.++.+|..++++++++|+|||++ +.++|++...|++.+.... .+++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 7889999999999887643 3679999999999
Q ss_pred CCCCCCC-c-------------------cCHHHHHHHHHH----------------hCCcEEEEcCCCCCCHHHHHHHHH
Q 028686 119 DMDESKR-A-------------------VPTSKGQALADE----------------YGIKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 119 Dl~~~~~-~-------------------~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
||.+... . ...+++..++.. ..+.++++||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 0 124566666432 124568999999999999999999
Q ss_pred HHHHHHhc
Q 028686 163 RDIKQRLA 170 (205)
Q Consensus 163 ~~~~~~~~ 170 (205)
+.+.+...
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876554
No 176
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.78 E-value=1.7e-18 Score=140.08 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=104.9
Q ss_pred cceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHh
Q 028686 34 TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQ 103 (205)
Q Consensus 34 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~ 103 (205)
+|+|.+. ..+.+++ +.+.+||++|++.++.+|..++++++++|+|||+++ .++|.++..|+..+..
T Consensus 203 ~TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 203 LTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp CCCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred ceeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 4566544 4555665 889999999999999999999999999999999999 8999999999999876
Q ss_pred hc-CCCCcEEEEEeCCCCCCCCC--cc---------------------------CHHHHHHHH-----HH--------hC
Q 028686 104 HA-SDNVNKVLVGNKADMDESKR--AV---------------------------PTSKGQALA-----DE--------YG 140 (205)
Q Consensus 104 ~~-~~~~piiiv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~ 140 (205)
.. ..++|++||+||.||..... .+ ..+++..|+ .. .+
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 53 36799999999999843111 01 135555553 22 24
Q ss_pred CcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 141 IKFFETSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 141 ~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
+.++++||+++.||+++|.++.+.+.....
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999998876644
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=1.2e-18 Score=141.87 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=110.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC-Cc-ccceeeEEEEEEEEECCEEEEEEEEeCCChhh----hhhhhhh---hccC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSFTT-SF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRG 75 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~ 75 (205)
.|+|+|++|||||||+++|.+..... .+ ..|.... ...+.+++ ...+.+||+||... +..+... .+..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 47899999999999999998875321 11 1122212 22233433 24588999999732 2222222 2457
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCC
Q 028686 76 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 153 (205)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (205)
++.+++++|++ ..++.++..|...+..+.. ...|.++++||.|+... ...+++.+.....+++++++||+++.|
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 99999999998 6677788777777765431 24799999999998542 233445555556678999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 028686 154 VEQVFFSIARDIKQRLA 170 (205)
Q Consensus 154 i~~~~~~i~~~~~~~~~ 170 (205)
+++++++|.+.+.+...
T Consensus 312 i~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 312 LPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999876543
No 178
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=9e-20 Score=143.37 Aligned_cols=133 Identities=22% Similarity=0.218 Sum_probs=109.1
Q ss_pred HHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChh-HHHHHH
Q 028686 18 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR 95 (205)
Q Consensus 18 sli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 95 (205)
+|+.+++.+.+. ..+.||+|..+. ..+..++ .+.+||+ +++++.+++.+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 578888888888 888999995444 3332232 6899999 8899999999999999999999999997 788899
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhC--CcEEEEcCCCCCCHHHHHHHHH
Q 028686 96 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIA 162 (205)
Q Consensus 96 ~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~~~~~i~ 162 (205)
.|+..+.. .++|+++|+||+||.+. .. .+++.+++..++ ++++++||++|.|++++|..+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~-~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDE-DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCH-HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCc-hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99988765 46999999999999642 22 245777777777 8999999999999999998864
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=2.6e-18 Score=148.02 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=79.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc------------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 65 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~------------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (205)
.+|+++|+.|+|||||+++|++....... ...++.......+... .+.+.+|||||+.++
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGYGDF 87 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCSGGG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCccch
Confidence 58999999999999999999853321000 0111211222233333 477999999999999
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 121 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~ 121 (205)
......+++.+|++++|+|+++..... ...++..+.. .++|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 988999999999999999988753322 2344444443 369999999999985
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=9.3e-20 Score=143.22 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=87.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC-CCCCCcc--------cceeeEEEEEEEEECCEEEEEEEEeCCCh-------hhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG-SFTTSFI--------TTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ERFR 66 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~-~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~ 66 (205)
.++|+|+|++|+|||||+++|.+. .++.... ++.........+..++....+.+||++|. +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 478999999999999999998875 3333221 22221111122222344568999999998 4444
Q ss_pred hhhh-------hhccC-------------CcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCC-C
Q 028686 67 TITT-------AYYRG-------------AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-R 125 (205)
Q Consensus 67 ~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~-~ 125 (205)
.+.. .+++. +++++|+.+.+. .+++.+. .+.+.... .+.|+++|+||.|+.... .
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHHHH
Confidence 4443 34332 233555544332 1233322 13333333 468999999999986421 1
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 028686 126 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 170 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~~ 170 (205)
....+++.+++..++++++++||+++ |++++|.++.+.+.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 22346778888889999999999999 999999999998875443
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=9.1e-19 Score=140.95 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=78.1
Q ss_pred EEEEEeCCChhhh-------------hhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686 53 KLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 53 ~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 119 (205)
.+.+|||||..++ ..+...++.++|++|+|+|..+.+... ..|+..+......+.|+++|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5899999997765 566788899999999999876543221 3345555555546789999999999
Q ss_pred CCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 120 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
+.+. .....+.+..+....+.+|+++++.++.++++.+..+...
T Consensus 215 l~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 215 LMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp GCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred cCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 9753 3334444444455667899999999998888776654443
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=3.1e-18 Score=148.08 Aligned_cols=161 Identities=14% Similarity=0.168 Sum_probs=106.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCccccee-eEEE---------------------------------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIG-IDFK--------------------------------------- 41 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~-~~~~--------------------------------------- 41 (205)
.++|+|+|.+|+|||||+|+|++..+. ....|++. ....
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 589999999999999999999988743 22233331 0000
Q ss_pred -------------EEEEEECCEE--EEEEEEeCCChhh---hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHh
Q 028686 42 -------------IRTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ 103 (205)
Q Consensus 42 -------------~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 103 (205)
...+.++... ..+.+|||||... .......+++.+|++++|+|++++.+..+...|.+.+..
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~ 228 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG 228 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh
Confidence 0001111000 2489999999765 335566788999999999999988777776656555432
Q ss_pred hcCCCCcEEEEEeCCCCCCCCCccCHH----------HHHH-----HHHH--------hCCcEEEEcCC-----------
Q 028686 104 HASDNVNKVLVGNKADMDESKRAVPTS----------KGQA-----LADE--------YGIKFFETSAK----------- 149 (205)
Q Consensus 104 ~~~~~~piiiv~nK~Dl~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~----------- 149 (205)
.+.|+++|+||+|+.... .+..+ .+.. +... ...+++++||+
T Consensus 229 ---~~~~iiiVlNK~Dl~~~~-~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 229 ---RGLTVFFLVNAWDQVRES-LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp ---SCCCEEEEEECGGGGGGG-CSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred ---hCCCEEEEEECccccccc-ccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 357899999999986422 11111 1111 1111 12478999999
Q ss_pred ---CCCCHHHHHHHHHHHHHH
Q 028686 150 ---TNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 150 ---~~~gi~~~~~~i~~~~~~ 167 (205)
++.|+++++.++.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 183
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=1.1e-17 Score=140.34 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=77.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCCC------------------cccceeeEEE--EEEEEECCEEEEEEEEeCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTS------------------FITTIGIDFK--IRTIELDGKRIKLQIWDTA 60 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~------------------~~~t~~~~~~--~~~~~~~~~~~~~~i~D~~ 60 (205)
..+|+++|.+++|||||+++|+... +... ..++.+.+.. ...+..++ +.+.+||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDTP 90 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDTP 90 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEECC
Confidence 5799999999999999999998742 1000 0001111111 12233333 679999999
Q ss_pred ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
|+.+|......++..+|++|+|+|+++.... ....++..+. ..++|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 9999988888899999999999999885321 1222223222 24799999999999864
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=1.7e-17 Score=143.37 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=81.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--C------CC------------CcccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--F------TT------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~------~~------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
..+|+|+|.+|+|||||+++|+... + .. ....|.. .....+.+.+ +.+.+|||||+
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEECC--eEEEEEECcCc
Confidence 5799999999999999999998421 1 00 1111211 2222334444 67999999999
Q ss_pred hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 63 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
.+|...+..+++.+|++|+|+|+++..++.....|.. +.. .++|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999889999999999999999998777666555543 332 3699999999999865
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=5e-17 Score=140.67 Aligned_cols=116 Identities=18% Similarity=0.101 Sum_probs=80.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCCC-----------c-----ccceeeEEEEEEEEEC-----CEEEEEEEEeC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTTS-----------F-----ITTIGIDFKIRTIELD-----GKRIKLQIWDT 59 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~~-----------~-----~~t~~~~~~~~~~~~~-----~~~~~~~i~D~ 59 (205)
..+|+|+|..++|||||+++|+... +... + ...+........+.++ +..+.+.+|||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 5789999999999999999997531 1110 0 0111111122223332 23478999999
Q ss_pred CChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 60 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 60 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
||+.+|......+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 99999998899999999999999999987554443333 22322 4699999999999864
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.74 E-value=1.8e-17 Score=128.34 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=79.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhCCCCC-CcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhhhh-------hh-
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT-------AY- 72 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~- 72 (205)
..++|+++|.+|+|||||+|+|++..+.. ...+..........+..++ ..+.+|||||..++..... .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 35899999999999999999999887521 1112111122223334444 6799999999865542221 11
Q ss_pred -ccCCcEEEEEEeCCChhHHHHH-HHHHHHHHhhcCCC--CcEEEEEeCCCCCC
Q 028686 73 -YRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDN--VNKVLVGNKADMDE 122 (205)
Q Consensus 73 -~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~--~piiiv~nK~Dl~~ 122 (205)
...+|++++|+|++.. ++... ..|+..+......+ .|+++|+||+|+.+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 3479999999998763 34333 35777776654433 69999999999864
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=138.62 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=82.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCc-------ccceeeEEEEEEEEECCEEEEEEEEeCCChhhhh-------h
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------T 67 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~-------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~ 67 (205)
.++|+|+|++|||||||++.|++..+. ... .++.+.......+...+....+.+||++|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 478999999999999999999987652 211 2233322222222223444578999999976431 1
Q ss_pred ------------------hhhhhccCCcEEEEEEeCCCh-hHHHHHH-HHHHHHHhhcCCCCcEEEEEeCCCCCCCCCcc
Q 028686 68 ------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV 127 (205)
Q Consensus 68 ------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~ 127 (205)
+...++.++++.+++|..... .++..+. .|+..+. .++|+|+|+||+|+.. ...+
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~-~~ev 185 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT-PEEC 185 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-HHHH
Confidence 123345556655555555432 3444443 4666553 3699999999999854 2223
Q ss_pred CH--HHHHHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 128 PT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
.. +.+..++...+++++++|+.++.+++++|..+...
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 32 56677778889999999999999999887776643
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.73 E-value=2.6e-17 Score=142.28 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=81.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh--CCCCCC---c-------------ccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD--GSFTTS---F-------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~--~~~~~~---~-------------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (205)
..+|+|+|.+|+|||||+++|+. +.+... . .+.+........+.+++ +.+.+|||||+.+
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCcc
Confidence 47899999999999999999985 222100 0 01111111122334444 6799999999999
Q ss_pred hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 65 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
+......+++.+|++++|+|+++..++.....|.. +.. .++|+++|+||+|+..
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 98888999999999999999998766665554543 333 3689999999999865
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=3.9e-18 Score=138.53 Aligned_cols=85 Identities=20% Similarity=0.145 Sum_probs=47.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEE-------------------EECC-EEEEEEEEeCCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTI-------------------ELDG-KRIKLQIWDTAG 61 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~-------------------~~~~-~~~~~~i~D~~g 61 (205)
++|+++|.||||||||+|+|.+........| |.........+ .+++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998873222222 11111221111 1222 257899999999
Q ss_pred hhh----hhhhhh---hhccCCcEEEEEEeCCCh
Q 028686 62 QER----FRTITT---AYYRGAMGILLVYDVTDE 88 (205)
Q Consensus 62 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 88 (205)
... ...+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 233333 346899999999999875
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=1.8e-17 Score=130.79 Aligned_cols=112 Identities=12% Similarity=0.161 Sum_probs=70.0
Q ss_pred EEEEEEeCCChhh-------------hhhhhhhhccCCcEEEEEEeCCChhHH-HHHHHHHHHHHhhcCCCCcEEEEEeC
Q 028686 52 IKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKVLVGNK 117 (205)
Q Consensus 52 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piiiv~nK 117 (205)
..+.+|||||..+ +......++..+|++++|+|.++.... .....+...+. ..+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence 4689999999643 456677788999999999997442211 11112223332 246899999999
Q ss_pred CCCCCCCCccCHHHHHHHHHHhCCcEEEEcCCC------CCCHHHHHHHHHHHHHH
Q 028686 118 ADMDESKRAVPTSKGQALADEYGIKFFETSAKT------NLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~gi~~~~~~i~~~~~~ 167 (205)
+|+.+... ...+.+......++..++++++.+ +.|++++++.+.+.+..
T Consensus 208 ~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99965332 122222211112225677776654 67889999988777754
No 191
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.68 E-value=6.9e-19 Score=132.54 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=90.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEE------------EEEEEEC-CEEE-----------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFK------------IRTIELD-GKRI----------------- 52 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~------------~~~~~~~-~~~~----------------- 52 (205)
..+|+|+|.+|||||||+++|+...+...+.++++.++. ...+.++ +..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 117 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD 117 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence 478999999999999999999987655545555554432 1222221 1111
Q ss_pred --EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH
Q 028686 53 --KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130 (205)
Q Consensus 53 --~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 130 (205)
.+.++|++|.-... ..+-...+..+.+.|......... .+... .+.|.++|+||+|+.+ ......+
T Consensus 118 ~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~-~~~~~~~ 185 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLAD-AVGADIK 185 (226)
T ss_dssp GCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHH-HHTCCHH
T ss_pred CCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCc-hhHHHHH
Confidence 23344444421000 001112333445555422111000 00011 1367899999999854 2224566
Q ss_pred HHHHHHHHh--CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 131 KGQALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 131 ~~~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
++..++..+ +++++++||++|.|++++|+++.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 677776655 5789999999999999999999988764
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.67 E-value=6e-17 Score=121.47 Aligned_cols=155 Identities=17% Similarity=0.078 Sum_probs=94.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEE--------------EEEEEEEC----------------CEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDF--------------KIRTIELD----------------GKRI 52 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~--------------~~~~~~~~----------------~~~~ 52 (205)
..+|+++|.+|||||||+++|+..............++ ....+... ....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 36899999999999999999987532111111111000 00111110 0124
Q ss_pred EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132 (205)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 132 (205)
.+.+|||+|+.... ..+....+.+++|+|+.+... ....+... .+.|+++|+||+|+.+. .....+++
T Consensus 110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~-~~~~~~~~ 177 (221)
T 2wsm_A 110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEA-VGADVEKM 177 (221)
T ss_dssp SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHH-HTCCHHHH
T ss_pred CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcc-hhhHHHHH
Confidence 57899998852111 011125678999999876532 11111111 13789999999998542 12345666
Q ss_pred HHHHHHh--CCcEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 028686 133 QALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 133 ~~~~~~~--~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~~ 169 (205)
..++... +++++++||++|.|++++|+++.+.+..+.
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 6666554 378999999999999999999998876543
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=4.3e-18 Score=136.66 Aligned_cols=157 Identities=14% Similarity=0.115 Sum_probs=92.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCC------cccceeeE-------------------------------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTS------FITTIGID------------------------------------- 39 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~------~~~t~~~~------------------------------------- 39 (205)
..+|+|+|.+|||||||+|+|++.++.+. ..|+....
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999876321 11220000
Q ss_pred ------EEEEEEEECC-EEEEEEEEeCCChh-------------hhhhhhhhhccCCcEEEE-EEeCCChhHHHHHHHHH
Q 028686 40 ------FKIRTIELDG-KRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGILL-VYDVTDESSFNNIRNWI 98 (205)
Q Consensus 40 ------~~~~~~~~~~-~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~ 98 (205)
.....+.+.+ ....+.+|||||.. .+..+...++..++.+|+ |.|.+.. +... .|.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~~~ 187 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-DAL 187 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-HHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-HHH
Confidence 0000011100 12468999999953 345566677766665554 5565542 2111 122
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHH--HHHHhC-CcEEEEcCCCCCCHHHHHHHHHH
Q 028686 99 RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA--LADEYG-IKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 99 ~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
..+......+.|+++|+||+|+.+.... ..+.+.. +....+ .+++++||+++.|++++++++.+
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2333333457899999999999653221 1111111 001123 35678999999999999999876
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=1.6e-15 Score=121.21 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=91.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCccc--ceeeEEEEEEEEECCE---------------EEEEEEEeCCChhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF 65 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 65 (205)
.++|+++|.||||||||+|+|.+........| |...+.. .+.+++. ...+.+||+||..++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 47899999999999999999999774322222 2222221 2333332 146999999998754
Q ss_pred h----hhhh---hhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHH---------------------------
Q 028686 66 R----TITT---AYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI--------------------------- 101 (205)
Q Consensus 66 ~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i--------------------------- 101 (205)
. .+.. ..++.+|++++|+|+++. ++++++..+..++
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~ 159 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAK 159 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHH
Confidence 3 2322 347899999999999862 3344433222211
Q ss_pred -------------H-------------------hhc-CCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686 102 -------------E-------------------QHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 102 -------------~-------------------~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
. .+. ....|+++++|+.|... ......+.+.+++...+.+++.+||
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA 238 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCA 238 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEech
Confidence 0 010 12489999999998632 1223456677888888899999997
Q ss_pred CC
Q 028686 149 KT 150 (205)
Q Consensus 149 ~~ 150 (205)
+.
T Consensus 239 ~~ 240 (363)
T 1jal_A 239 AI 240 (363)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=4e-16 Score=137.43 Aligned_cols=125 Identities=20% Similarity=0.158 Sum_probs=88.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CCC--------------Ccc--cceeeEEEEEEEE------------ECCEEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FTT--------------SFI--TTIGIDFKIRTIE------------LDGKRI 52 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~~--------------~~~--~t~~~~~~~~~~~------------~~~~~~ 52 (205)
..+|+|+|.+++|||||+++|+... ... +.. .|+........+. .++..+
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4799999999999999999998742 100 011 1222222222222 234478
Q ss_pred EEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686 53 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131 (205)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 131 (205)
.+.+|||||+.+|...+..+++.+|++|+|+|+++..++.....|..... .++|+++++||+|+...+.....++
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcchhhhccCHHH
Confidence 89999999999999999999999999999999999877776655554332 4689999999999864333333333
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.61 E-value=3.6e-16 Score=125.52 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=69.3
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC-ccCHH
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTS 130 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~ 130 (205)
+.+.+|||||.... ....+..+|++++|+|....+.+..+. .. ..+.|+++|+||+|+.+... ....+
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~~-~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------KG-VLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------TT-SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------Hh-HhhcCCEEEEECCCCcChhHHHHHHH
Confidence 56899999995432 233457899999999987655432221 10 12368999999999853110 00111
Q ss_pred HHHHHHHHh-------CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 131 KGQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 131 ~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
+........ +.+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222221112 4789999999999999999999988765
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.61 E-value=3.9e-15 Score=125.48 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=78.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC----------------------CCCcccceeeEEEEEEEEECCEEEEEEEEeCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF----------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 60 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~----------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 60 (205)
.-+|+|+|..++|||||..+|+...- ..+....+.+......+.+++ +.+.|+|||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCC
Confidence 45899999999999999999963210 001111111111223344555 678999999
Q ss_pred ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686 61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123 (205)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~ 123 (205)
|+.+|.....+.++-+|++|+|+|+...-.-.....| ..+.. .++|+++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchhc
Confidence 9999999999999999999999999874322222223 33333 46999999999997553
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=4.1e-15 Score=119.43 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=94.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-C-----cccceeeEEEEEEEEECC-------------------EEEEEEEEe
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTT-S-----FITTIGIDFKIRTIELDG-------------------KRIKLQIWD 58 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~-~-----~~~t~~~~~~~~~~~~~~-------------------~~~~~~i~D 58 (205)
++|+++|.||+|||||+|+|.+..... . ..|+.+.. .+.+ ....+.+||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 578999999999999999998864221 1 23333321 2211 235699999
Q ss_pred CCChhhhh----hh---hhhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHH--------------------
Q 028686 59 TAGQERFR----TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI-------------------- 101 (205)
Q Consensus 59 ~~g~~~~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-------------------- 101 (205)
+||..... .+ ....++.+|++++|+|+++. +.++++..+..++
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~ 155 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEAR 155 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhc
Confidence 99986532 22 22347899999999999751 2222221111111
Q ss_pred ---------------H----h-------------------hc-CCCCcEEEEEeCCCCC--CCCCccCHHHHHHHHHHhC
Q 028686 102 ---------------E----Q-------------------HA-SDNVNKVLVGNKADMD--ESKRAVPTSKGQALADEYG 140 (205)
Q Consensus 102 ---------------~----~-------------------~~-~~~~piiiv~nK~Dl~--~~~~~~~~~~~~~~~~~~~ 140 (205)
. . +. ....|+++++||.|.. +.......+.+++++...+
T Consensus 156 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g 235 (368)
T 2dby_A 156 ADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG 235 (368)
T ss_dssp HCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcC
Confidence 0 0 00 0137999999999842 2111345677788888889
Q ss_pred CcEEEEcCCCCCCHHHHHH
Q 028686 141 IKFFETSAKTNLNVEQVFF 159 (205)
Q Consensus 141 ~~~~~~Sa~~~~gi~~~~~ 159 (205)
.+++++||+...++.+++.
T Consensus 236 ~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 236 AEVVVVSARLEAELAELSG 254 (368)
T ss_dssp CEEEEECHHHHHHHHTSCH
T ss_pred CeEEEeechhHHHHHHhch
Confidence 9999999988766665544
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.56 E-value=5.2e-15 Score=124.86 Aligned_cols=117 Identities=16% Similarity=0.126 Sum_probs=79.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC---CCcccceeeEEEEEE----------------------EEE------CCEE
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRT----------------------IEL------DGKR 51 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~---~~~~~t~~~~~~~~~----------------------~~~------~~~~ 51 (205)
..+|+|+|.+|+|||||+|+|++..+. ....+++........ +.. ++..
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 478999999999999999999998763 222332211100000 000 0000
Q ss_pred ---------EEEEEEeCCChhh-----------hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE
Q 028686 52 ---------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 111 (205)
Q Consensus 52 ---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 111 (205)
..+.+|||||... +......++..+|++++|+|+++.........|+..+.. .+.|+
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pv 221 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKI 221 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCE
Confidence 2588999999764 445667788899999999999875444555556665543 35899
Q ss_pred EEEEeCCCCCC
Q 028686 112 VLVGNKADMDE 122 (205)
Q Consensus 112 iiv~nK~Dl~~ 122 (205)
++|+||+|+.+
T Consensus 222 ilVlNK~Dl~~ 232 (550)
T 2qpt_A 222 RVVLNKADMVE 232 (550)
T ss_dssp EEEEECGGGSC
T ss_pred EEEEECCCccC
Confidence 99999999864
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.54 E-value=7.6e-14 Score=107.12 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=68.3
Q ss_pred EEEEEEeCCChhhhhhhhh------hhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 52 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
+.+.+|||||......... ..+.. +++++++|... +..+.....+..... ...+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence 4689999999876543221 23455 88888888754 223322221111111 113589999999999854
Q ss_pred CCCccCHHHHHHH----------------------------HHHhC--CcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 123 SKRAVPTSKGQAL----------------------------ADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 123 ~~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
.. . .+++.++ +..++ .+++++||+++.|++++++++.+.+..
T Consensus 186 ~~-~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EE-E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HH-H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cc-c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 21 1 1111111 23333 489999999999999999999887654
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.53 E-value=6.5e-14 Score=112.07 Aligned_cols=103 Identities=12% Similarity=0.094 Sum_probs=62.5
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 131 (205)
+.+.++||+|.... ...+...+|.+++|+|+..++....+.. .+ .+.|.++|+||+|+.+.. . ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~-~~~~ 233 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-P-ARRI 233 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-H-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-h-HHHH
Confidence 46799999996422 2334678999999999987543222211 11 236889999999985310 0 0111
Q ss_pred HHHHHH----------HhCCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 132 GQALAD----------EYGIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 132 ~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
...+.. ....+++.+||+++.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222211 113578999999999999999999887643
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.50 E-value=7.1e-13 Score=106.50 Aligned_cols=152 Identities=16% Similarity=0.129 Sum_probs=96.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhh----hhh---hhhhccCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRGA 76 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~ 76 (205)
.+|+++|.||||||||+|+|.+........|.++.+.....+.+++ ..+.++|+||...- ..+ ....++.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4799999999999999999999876555555555566666777777 56889999996421 111 22346789
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCC-------CCCccCHHHHHHHHHHhCCcEEEEc
Q 028686 77 MGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDE-------SKRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
|++++|+|++++.. +......++.... -.+.|.++++||.|... .......+++..+...+.+..-.+-
T Consensus 151 d~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 151 NLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA 228 (376)
T ss_dssp SEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred CccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence 99999999998642 2222223332221 13578889999999632 1123456666666666654323333
Q ss_pred CCCCCCHHHHHH
Q 028686 148 AKTNLNVEQVFF 159 (205)
Q Consensus 148 a~~~~gi~~~~~ 159 (205)
...+...+++.+
T Consensus 229 ~~~nv~eddl~d 240 (376)
T 4a9a_A 229 FRCDATVDDLID 240 (376)
T ss_dssp ECSCCCHHHHHH
T ss_pred ecccCCHHHHHH
Confidence 333444555443
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.49 E-value=1.7e-14 Score=115.22 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=65.3
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC--H
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--T 129 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~--~ 129 (205)
+.+.+|||||..+... .....+|++++|+|.+..+.+..+.. .. .+.|.++|+||+|+.+. .... .
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~-~~~~~~~ 216 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNH-TNVAIAR 216 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCH-HHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCCh-HHHHHHH
Confidence 5689999999764432 24578999999999976543221111 11 13688999999998542 1111 1
Q ss_pred HHHHHHHHHh-------CCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q 028686 130 SKGQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIKQ 167 (205)
Q Consensus 130 ~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~~~~~i~~~~~~ 167 (205)
++.+...... ..+++++||++|.|+++++++|.+.+..
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 1222222221 3578999999999999999999987753
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.47 E-value=7.1e-15 Score=126.12 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=78.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC--CC------CCcccce--------eeEEEEEEEEECCEEEEEEEEeCCChhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS--FT------TSFITTI--------GIDFKIRTIELDGKRIKLQIWDTAGQERFR 66 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~--~~------~~~~~t~--------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (205)
.-||+|+|..++|||||+.+|+... .. .....+. |++.....+.+..++..+.++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 4579999999999999999996421 11 0000000 111122222223344678999999999999
Q ss_pred hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686 67 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123 (205)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~ 123 (205)
......++-+|++|+|+|+...-.-. ....+..+..+ ++|+++++||+|....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~---~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM---GIPTIFFINKIDQNGI 134 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH---TCSCEECCEECCSSSC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEeccccccC
Confidence 99999999999999999998742211 22233344433 5899999999997654
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=4.2e-13 Score=116.52 Aligned_cols=115 Identities=17% Similarity=0.050 Sum_probs=76.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC--------CCCC----------CcccceeeEEEEEEEEEC-----CEEEEEEEEeCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG--------SFTT----------SFITTIGIDFKIRTIELD-----GKRIKLQIWDTA 60 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~--------~~~~----------~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~ 60 (205)
-||+|+|..++|||||..+|+.. .... +....+.+......+.+. ...+.+.++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 47999999999999999999632 1111 111111111122233332 135789999999
Q ss_pred ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCC
Q 028686 61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 122 (205)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~ 122 (205)
|+.+|.....+.++-+|++|+|+|+...-.... ...+..... .++|+++++||+|...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~---~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK---YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---HTCCEEEEEECSSSTT
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH---cCCCeEEEEccccccC
Confidence 999999999999999999999999987432222 222333333 3599999999999754
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=1.5e-13 Score=107.82 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=78.4
Q ss_pred hhhhhhhhhhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccC-HHHHHHHHHHh
Q 028686 62 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADEY 139 (205)
Q Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~-~~~~~~~~~~~ 139 (205)
++++..+...+++++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+||.+. ..+. .++...++...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~-~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNE-EEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCH-HHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCc-cccHHHHHHHHHHHHC
Confidence 5667778888999999999999999986 89888899987765 46999999999999642 1112 34556666777
Q ss_pred CCcEEEEcCCCCCCHHHHHHHH
Q 028686 140 GIKFFETSAKTNLNVEQVFFSI 161 (205)
Q Consensus 140 ~~~~~~~Sa~~~~gi~~~~~~i 161 (205)
+++++++||+++.|+++++..+
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHhhc
Confidence 8999999999999999999875
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.39 E-value=5e-13 Score=115.63 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=93.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCccccee----eE--------------------------------------
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIG----ID-------------------------------------- 39 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~----~~-------------------------------------- 39 (205)
..+|+|+|.+++|||||+|+|++..+ +....+++. ..
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 35899999999999999999999775 222111110 00
Q ss_pred --------EEEEEEEECCEEEEEEEEeCCChhh-------------hhhhhhhhc-cCCcEEEEEEeCCChhHHHHHHHH
Q 028686 40 --------FKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIRNW 97 (205)
Q Consensus 40 --------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~ 97 (205)
.....+...+ ...+.++||||... ...+...++ ..+|++++|+|++....-.+...+
T Consensus 131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0000111111 12478999999432 223334444 578999999999864322222223
Q ss_pred HHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHH----hC-CcEEEEcCCCCCCHHHHHHHHHHH
Q 028686 98 IRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YG-IKFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 98 ~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
+..+. ..+.|+++|+||+|+.+... .. ..+.. ... .+ .+++.+||++|.|++++++.+.+.
T Consensus 210 l~~L~---~~g~pvIlVlNKiDlv~~~~-~~-~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 210 AKEVD---PQGQRTIGVITKLDLMDEGT-DA-RDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHC---TTCSSEEEEEECTTSSCTTC-CS-HHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHH---hcCCCEEEEEeCcccCCcch-hh-HHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33333 34689999999999975322 21 11111 111 12 356789999999999999998863
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.38 E-value=2.4e-13 Score=99.75 Aligned_cols=106 Identities=8% Similarity=-0.027 Sum_probs=70.3
Q ss_pred CCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHH----HHhhc-CCCCcEEEEEeCC-CCCCCCCccCHHHH
Q 028686 59 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN----IEQHA-SDNVNKVLVGNKA-DMDESKRAVPTSKG 132 (205)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----i~~~~-~~~~piiiv~nK~-Dl~~~~~~~~~~~~ 132 (205)
.+|+...+.+|..|+.++|++|||+|.+|++-++ ....+.. +.... ..++|++|++||. |+++ .....++
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI 184 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYL 184 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHH
Confidence 3478899999999999999999999999975433 3333322 22221 2578999999995 6743 3455555
Q ss_pred HHHHH----HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686 133 QALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 133 ~~~~~----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 168 (205)
.+... ...+.++.|||.+|+|+.+.++||...+..+
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 44322 1347789999999999999999998776443
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.34 E-value=5.7e-12 Score=100.32 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=63.2
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHH
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK 131 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~ 131 (205)
+.+.++||+|..... ......+|.+++|+|....+....+.. .+. +.+.++++||+|+... .......
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~---~i~-----~~~~ivvlNK~Dl~~~-~~~s~~~ 215 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIF-----ELADMIAVNKADDGDG-ERRASAA 215 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH---HHh-----ccccEEEEEchhccCc-hhHHHHH
Confidence 568999999975322 123468999999999865432211111 111 2356778899997431 1112222
Q ss_pred HHHHHHHh----------CCcEEEEcCCCCCCHHHHHHHHHHHHH
Q 028686 132 GQALADEY----------GIKFFETSAKTNLNVEQVFFSIARDIK 166 (205)
Q Consensus 132 ~~~~~~~~----------~~~~~~~Sa~~~~gi~~~~~~i~~~~~ 166 (205)
.+++.... ..+++.+||+++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33333211 357889999999999999999988765
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=8.7e-13 Score=106.45 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=50.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCE---------------EEEEEEEeCCChhhhhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERFRT 67 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~ 67 (205)
.++|+++|.+|+|||||+|+|.+..+.....|+.+.+.....+.+++. ...+.+||+||.....+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 478999999999999999999988754444443333333334444332 23589999999876443
Q ss_pred -------hhhhhccCCcEEEEEEeCCChhHH
Q 028686 68 -------ITTAYYRGAMGILLVYDVTDESSF 91 (205)
Q Consensus 68 -------~~~~~~~~~d~~i~v~d~~~~~s~ 91 (205)
.+..+++.+|++++|+|+.+.+++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC------
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 345678899999999999865443
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=3.2e-11 Score=97.45 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=57.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcccceeeEEEEEEEEECCE-------------E--EEEEEEeCCChhh--
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK-------------R--IKLQIWDTAGQER-- 64 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~-------------~--~~~~i~D~~g~~~-- 64 (205)
-.+++++|.+|||||||+|.|.+... .....|+...+.....+.+.+. . ..+.+||+||...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 36899999999999999999999765 3444443333333333444431 1 3589999999543
Q ss_pred -----hhhhhhhhccCCcEEEEEEeCCC
Q 028686 65 -----FRTITTAYYRGAMGILLVYDVTD 87 (205)
Q Consensus 65 -----~~~~~~~~~~~~d~~i~v~d~~~ 87 (205)
........++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455678999999999863
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.28 E-value=4.6e-12 Score=97.32 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=75.2
Q ss_pred CCChhhhhhhhhhhccCCcEEEEEEeCCChhHHH---HHHHHHHHHHhhc-CCCCcEEEEEeC-CCCCCCCCccCHHHHH
Q 028686 59 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHA-SDNVNKVLVGNK-ADMDESKRAVPTSKGQ 133 (205)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~~-~~~~piiiv~nK-~Dl~~~~~~~~~~~~~ 133 (205)
.+|+...+.+|..|+.++|++|||+|.+|++-++ ++..+...+.... ..++|++|++|| .|+++ .....++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHHHH
Confidence 4678889999999999999999999999976543 2222223332221 257999999996 58853 34555554
Q ss_pred HHHH----HhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686 134 ALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 134 ~~~~----~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 168 (205)
+... ...+.++.|||.+|+|+.+.++|+.+.+..+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 4322 1346789999999999999999999877543
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.09 E-value=4.1e-10 Score=90.61 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=74.0
Q ss_pred ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH----H
Q 028686 61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL----A 136 (205)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~ 136 (205)
..++|..+...+.+.++++++|+|+++++ ..|...+.+.. .+.|+++|+||+||.+. ....+...++ +
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~--~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK--SVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT--TSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc--ccCHHHHHHHHHHHH
Confidence 35678899999999999999999999864 34666666654 36899999999999642 2334444444 5
Q ss_pred HHhCC---cEEEEcCCCCCCHHHHHHHHHHH
Q 028686 137 DEYGI---KFFETSAKTNLNVEQVFFSIARD 164 (205)
Q Consensus 137 ~~~~~---~~~~~Sa~~~~gi~~~~~~i~~~ 164 (205)
...++ .++++||++|.|++++++.+.+.
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 56676 79999999999999999998664
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=6.9e-10 Score=89.35 Aligned_cols=97 Identities=23% Similarity=0.279 Sum_probs=72.7
Q ss_pred ChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH----H
Q 028686 61 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL----A 136 (205)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~----~ 136 (205)
.+++|+++...++..++++++|+|++++++ .|...+.+.. .+.|+++|+||+||.+. ....+...++ +
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~--~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPR--SVKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCT--TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCC--ccCHHHHHHHHHHHH
Confidence 467899999999999999999999999763 3444454444 36899999999999652 2333444444 4
Q ss_pred HHhCC---cEEEEcCCCCCCHHHHHHHHHHHH
Q 028686 137 DEYGI---KFFETSAKTNLNVEQVFFSIARDI 165 (205)
Q Consensus 137 ~~~~~---~~~~~Sa~~~~gi~~~~~~i~~~~ 165 (205)
...|+ .++.+||++|.|++++++.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55665 689999999999999999987654
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=2.5e-09 Score=82.95 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=70.1
Q ss_pred EEeCCChh-hhhhhhhhhccCCcEEEEEEeCCChhHHHH--HHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHH
Q 028686 56 IWDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG 132 (205)
Q Consensus 56 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~ 132 (205)
+-..||+- +........+..+|++++|+|+.++.+..+ +..|+ .+.|.++|+||+||.+. ...+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHH
Confidence 34578875 445556677889999999999999877643 33222 46899999999999641 111222
Q ss_pred HHHHHHhCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 028686 133 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 168 (205)
Q Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~i~~~~~~~ 168 (205)
.++.+..+++++.+||.++.|++++++.+.+.+...
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 333444578999999999999999999988877654
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.5e-09 Score=87.09 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=34.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc----ccceeeEEEEEEEEECCEEEEEEEEeCCCh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 62 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (205)
++++|+|++|+|||||++.|++..+.... .+............-.+....+.++|++|.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 67999999999999999999987532111 121111111111111222336888999874
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.84 E-value=2.1e-10 Score=92.31 Aligned_cols=139 Identities=15% Similarity=0.104 Sum_probs=79.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC------CCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhh--------hh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------IT 69 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~ 69 (205)
.+|+++|.+|+|||||+|+|++. .......|.++.+ ...+.++. .+.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999986 2222222322222 22333332 278999999542211 11
Q ss_pred hhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686 70 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 70 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
..++ +..++++++++....--+..+ ..+......+.|+++++||.|... ..-.......+.+..|..+...+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l----~~l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGL----ARLDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred HHHhcccccCceEEEEcCCceEEECCE----EEEEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence 2222 568899999987432000011 111222235689999999999754 22334445556677776655555
Q ss_pred CCCCCC
Q 028686 148 AKTNLN 153 (205)
Q Consensus 148 a~~~~g 153 (205)
+.+..+
T Consensus 312 ~~~~~~ 317 (369)
T 3ec1_A 312 KRYAAE 317 (369)
T ss_dssp GGGTTT
T ss_pred chhhhh
Confidence 544333
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.83 E-value=1.4e-10 Score=93.38 Aligned_cols=135 Identities=11% Similarity=0.054 Sum_probs=73.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-----CCcccceeeEEEEEEEEECCEEEEEEEEeCCChhhhhhh--------hh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFT-----TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TT 70 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 70 (205)
.+|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+... +.++||||......+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 47999999999999999999886311 111122222222333344332 789999996432211 11
Q ss_pred hh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686 71 AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 71 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
.+ .+..+.++++++.....-+..+ ..+......+.|+++++||.|... ..........+.+..|..++..+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l----~~~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGL----ARFDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTT----EEEEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcce----EEEEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCCc
Confidence 11 2567788888877321100111 111222234689999999999754 22233444455666665444343
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.83 E-value=1.4e-09 Score=90.54 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=84.8
Q ss_pred eEEEEECCCCCcHHHHHHHHH------hCCC---C-CCcccc-----------eeeEEEEEEEE-------------ECC
Q 028686 4 LLRIYFERGGVGKSCLLLRFS------DGSF---T-TSFITT-----------IGIDFKIRTIE-------------LDG 49 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~------~~~~---~-~~~~~t-----------~~~~~~~~~~~-------------~~~ 49 (205)
..|+++|.+||||||+++.|. +.+. . ..+.+. .+.+++..... +..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~ 181 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999998 3321 0 001110 01112211000 000
Q ss_pred EEEEEEEEeCCChhhhh-hhhhh---h--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcE-EEEEeCCCCCC
Q 028686 50 KRIKLQIWDTAGQERFR-TITTA---Y--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDE 122 (205)
Q Consensus 50 ~~~~~~i~D~~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-iiv~nK~Dl~~ 122 (205)
..+.+.|+||||..... .+... + ...+|.+++|+|........ .....+... +|+ ++|+||.|...
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDGHA 254 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTSCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCcccc
Confidence 22568999999975321 11111 1 12689999999998754321 122233221 565 88999999753
Q ss_pred CCCccCHHHHHHHHHHhCCcE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 028686 123 SKRAVPTSKGQALADEYGIKF------------------FETSAKTNLN-VEQVFFSIARD 164 (205)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~~~~~i~~~ 164 (205)
.. ..+.......+.|+ +.+|+..|.| ++++++++.+.
T Consensus 255 -~~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 -KG----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp -CC----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred -ch----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11 11222334445443 3468889988 99999988765
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.71 E-value=7.8e-08 Score=74.06 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++++|++|+|||||++.|++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999998754
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.65 E-value=2.7e-07 Score=75.09 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=83.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC-cccceeeEEE--EEEEEECCEEEEEEEEeCCChhhhhhhhhh-----hccC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTS-FITTIGIDFK--IRTIELDGKRIKLQIWDTAGQERFRTITTA-----YYRG 75 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~~ 75 (205)
..++|+|++|||||||+|.|.+...... .....+.+.. ........ .-.+.+||++|.......... -+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3689999999999999999998532211 1111111110 00111111 114788999985421111111 1233
Q ss_pred CcEEEEEEeCC--ChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCC--C----CCCccCHHH----HHHHH----HHh
Q 028686 76 AMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD--E----SKRAVPTSK----GQALA----DEY 139 (205)
Q Consensus 76 ~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~--~----~~~~~~~~~----~~~~~----~~~ 139 (205)
.+..++ ++.. .++.. .+...+.. .+.|+++|.||.|+. + .-+....++ +.++. .+.
T Consensus 149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455554 6765 33221 12222322 358999999999963 1 011122232 33332 122
Q ss_pred C---CcEEEEcC--CCCCCHHHHHHHHHHHHHHHh
Q 028686 140 G---IKFFETSA--KTNLNVEQVFFSIARDIKQRL 169 (205)
Q Consensus 140 ~---~~~~~~Sa--~~~~gi~~~~~~i~~~~~~~~ 169 (205)
+ ...+.+|+ .++.|++++.+.+.+.+.+..
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 2 35788999 666779999999987765444
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.41 E-value=7.9e-08 Score=73.72 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=35.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChhh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 64 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (205)
++++++|.+|+|||||+|+|.+..... ..++.+.+.....+.++ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 589999999999999999999876422 12222322222222332 2578999999764
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.38 E-value=2.9e-07 Score=71.31 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=34.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC-CCcccceeeEEEEEEEEECCEEEEEEEEeCCChh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 63 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (205)
.++|+++|.||+|||||+|+|.+.... ....|..+ .....+.++. .+.+|||||..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT--TSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCee--eeeEEEEeCC---CEEEEECcCcC
Confidence 478999999999999999999987632 22222221 1112233332 47899999964
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.34 E-value=2.6e-07 Score=70.86 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCChhh-hhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHHHH
Q 028686 59 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD 137 (205)
Q Consensus 59 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (205)
.||+-. ........+.++|++++|+|+.++.+..... ++ + . +.|.++|+||+||.+. . ..+...++..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~--~-~~~~~~~~~~ 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADE--K-TTKKWVEFFK 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCH--H-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCH--H-HHHHHHHHHH
Confidence 466652 3344566778999999999999887654311 01 1 1 6899999999999642 1 1122233444
Q ss_pred HhCCcEEEEcCCCCCCHHHHHHHHHH
Q 028686 138 EYGIKFFETSAKTNLNVEQVFFSIAR 163 (205)
Q Consensus 138 ~~~~~~~~~Sa~~~~gi~~~~~~i~~ 163 (205)
..+.++ .+||.++.|++++++.+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 557888 9999999999999887654
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.26 E-value=7.4e-07 Score=72.95 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=53.1
Q ss_pred EEEEEEeCCChhhhh-----hhhh-hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFR-----TITT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
+.+.++||+|..... .+.. .....+|.+++|+|+...+.... ....+.... .+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~---~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT---PIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC---TTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC---CCeEEEEECCCCcc---
Confidence 568899999953211 1110 11235789999999887543322 223333221 34568899999742
Q ss_pred ccCHHHHHHHHHHhCCcEEEEcCCCCCCHH
Q 028686 126 AVPTSKGQALADEYGIKFFETSAKTNLNVE 155 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (205)
....+..+....+.|+..++. |++++
T Consensus 254 --~gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 254 --KGGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp --SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred --cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 123345556677888887775 54443
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.21 E-value=2.3e-06 Score=70.05 Aligned_cols=84 Identities=18% Similarity=0.113 Sum_probs=48.3
Q ss_pred EEEEEEeCCChhhhhh-hh---h--hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCC-c-EEEEEeCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT-IT---T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KVLVGNKADMDES 123 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iiiv~nK~Dl~~~ 123 (205)
+.+.++||||...... +. . ..+..+|.+++|+|...... .......+. ..+ | ..+|+||.|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~- 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA- 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc-
Confidence 4689999999653211 11 1 11226899999999876532 222222222 235 6 788999999742
Q ss_pred CCccCHHHHHHHHHHhCCcEEEEc
Q 028686 124 KRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
. ...+..+....+.++..++
T Consensus 253 ~----~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEEC
T ss_pred c----hHHHHHHHHHHCCCEEEee
Confidence 1 1233446666777766553
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.13 E-value=7.9e-07 Score=69.57 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=60.3
Q ss_pred hhhhhhhccCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc-cCHHHHHHHHHHhCCcE
Q 028686 66 RTITTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADEYGIKF 143 (205)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 143 (205)
..+....+.++|.+++|+|+.++.. ...+..++.... ..++|.+||+||+||.+.... ...+...++....|.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3445567889999999999997653 333333333322 256899999999999652100 01233344444568899
Q ss_pred EEEcCCCCCCHHHHHHH
Q 028686 144 FETSAKTNLNVEQVFFS 160 (205)
Q Consensus 144 ~~~Sa~~~~gi~~~~~~ 160 (205)
+.+||.++.|+++++..
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999998887766543
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.06 E-value=1.1e-05 Score=64.26 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=54.8
Q ss_pred hccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHHHHHHH---HHHhCCcEEEEc
Q 028686 72 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYGIKFFETS 147 (205)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~S 147 (205)
.+.++|.+++|.+.. |. +...+..++-.... .++|++||+||+||.+.. ..+....+ ....|++++.+|
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~---~~~~~~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDE---GMDFVNEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHH---HHHHHHHHHHHHHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCch---hHHHHHHHHHHHHhCCCcEEEEe
Confidence 467899999887764 43 34444444433332 358889999999996421 11123333 335678999999
Q ss_pred CCCCCCHHHHHHH
Q 028686 148 AKTNLNVEQVFFS 160 (205)
Q Consensus 148 a~~~~gi~~~~~~ 160 (205)
+.++.|++++...
T Consensus 200 a~~~~gl~~L~~~ 212 (358)
T 2rcn_A 200 SHTQDGLKPLEEA 212 (358)
T ss_dssp TTTTBTHHHHHHH
T ss_pred cCCCcCHHHHHHh
Confidence 9999999988764
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.05 E-value=2.9e-07 Score=76.37 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=63.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcccceeeEEEEEEEEECCEEEEEEEEeCCChh--hhhhhh--------hhh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRTIT--------TAY 72 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~~--------~~~ 72 (205)
.+.|+++|.+||||||+.++|...-.. ...++.............+......+||..|.. +.+..+ ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999764211 112222111000000011111234688999873 233333 455
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEE
Q 028686 73 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG 115 (205)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~ 115 (205)
+...++.++|+|.++. +.+....|++.+... +.+++++-
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~ 156 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE 156 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence 6567888999999987 566666777776654 24555443
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.03 E-value=1.7e-06 Score=70.77 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=53.7
Q ss_pred EEEEEEeCCChhh--hh----hhhhhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCC
Q 028686 52 IKLQIWDTAGQER--FR----TITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 123 (205)
Q Consensus 52 ~~~~i~D~~g~~~--~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~ 123 (205)
+.+.++||||... .. .....+ .-..+.+++|+|....+...+ ....+.... .+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEecccccc-
Confidence 4578999999533 11 111111 124688999999987543322 223333322 35678999999632
Q ss_pred CCccCHHHHHHHHHHhCCcEEEEcCCCCCCH
Q 028686 124 KRAVPTSKGQALADEYGIKFFETSAKTNLNV 154 (205)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (205)
....+..+....+.|+..++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233455566677899888876 5554
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.01 E-value=3e-06 Score=71.83 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=37.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc-----ccceeeEEEEEEEEE-CCEEEEEEEEeCCChh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDGSFTTSF-----ITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 63 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~ 63 (205)
.++|+|+|.||+|||||+|+|++....-.. ..|.+.... .... ......+.++||||..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBC
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcC
Confidence 478999999999999999999987632111 222332111 1111 1122468899999965
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.00 E-value=2.2e-05 Score=67.08 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.|+|+|++|||||||++.|.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999864
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.93 E-value=2.5e-05 Score=60.83 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=55.3
Q ss_pred EEEEEEeCCChhh--hhh-hhh-----hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCc-EEEEEeCCCCCC
Q 028686 52 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE 122 (205)
Q Consensus 52 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~Dl~~ 122 (205)
+.+.++||||... ... +.. .....+|.+++|+|..... +.......+.. ..| ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 4589999999765 221 111 1234689999999986532 22222233322 356 678899999632
Q ss_pred CCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686 123 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
....+..+....+.|+..++ .|+++++
T Consensus 254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 -----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp -----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred -----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23345567777888888776 4666654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.57 E-value=0.00037 Score=57.17 Aligned_cols=59 Identities=25% Similarity=0.183 Sum_probs=37.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhC------------------CCC---CCcccceeeEEEEEEE--E-ECCEEEEEEEEeCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG------------------SFT---TSFITTIGIDFKIRTI--E-LDGKRIKLQIWDTA 60 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~------------------~~~---~~~~~t~~~~~~~~~~--~-~~~~~~~~~i~D~~ 60 (205)
=|.|+|.+++|||+|+|.|++. .+. .....|.|+-.....+ . .++....+.+.||+
T Consensus 69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTe 148 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ 148 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCC
Confidence 3789999999999999999863 122 1122233422211111 1 14556889999999
Q ss_pred Chh
Q 028686 61 GQE 63 (205)
Q Consensus 61 g~~ 63 (205)
|..
T Consensus 149 G~~ 151 (447)
T 3q5d_A 149 GTF 151 (447)
T ss_dssp CCC
T ss_pred ccc
Confidence 964
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.42 E-value=8.9e-05 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999765
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00018 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
|+...|++.|.+||||||+.+.|...
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 66677999999999999999999763
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.26 E-value=0.00016 Score=51.91 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999874
No 238
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00022 Score=51.29 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|+...|+|.|.+||||||+.+.|..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 7778899999999999999998864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00019 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|++|||||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999763
No 240
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.14 E-value=0.00027 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=20.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|....|+|.|.+||||||+.+.|..
T Consensus 1 M~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999865
No 241
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.14 E-value=0.00031 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
+..|++.|.+||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 45689999999999999999986
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.12 E-value=0.00026 Score=50.95 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.12 E-value=0.00026 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999875
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.11 E-value=0.00024 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|+++|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 245
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.09 E-value=0.00038 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|....|+|.|.+||||||+.+.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999965
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.04 E-value=0.00034 Score=51.27 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++|+|++|||||||++.+.+..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998753
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.03 E-value=0.00036 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999998753
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.02 E-value=0.00036 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999998743
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.02 E-value=0.00029 Score=50.10 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=17.1
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 028686 6 RIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~ 24 (205)
++++|++|||||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999754
No 250
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.01 E-value=0.00041 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.01 E-value=0.00038 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|+|++|||||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00044 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|+|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.96 E-value=0.00044 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
-|+|+|++||||||+++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999998753
No 254
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.95 E-value=0.0005 Score=50.50 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999854
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.95 E-value=0.00058 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
--|+|+|++|||||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45789999999999999999864
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.94 E-value=0.0005 Score=48.33 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
-++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998754
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.94 E-value=0.0005 Score=48.37 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=18.5
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 028686 4 LLRIYFERGGVGKSCLLLRF 23 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l 23 (205)
+.|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 258
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.93 E-value=0.00053 Score=50.40 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.93 E-value=0.0005 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999754
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.93 E-value=0.0005 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35799999999999999999764
No 261
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.92 E-value=0.00066 Score=49.50 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999976
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.92 E-value=0.00063 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+++|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.92 E-value=0.00057 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999653
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.89 E-value=0.00057 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
-++++|++||||||+++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.88 E-value=0.0007 Score=49.20 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
..|+|+|++||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.87 E-value=0.00054 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|+.|||||||++.+.+-.
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998753
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.86 E-value=0.00067 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
++|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.86 E-value=0.00062 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+|+|++||||||+++.|.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.85 E-value=0.00064 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00076 Score=48.44 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999865
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.84 E-value=0.00089 Score=47.42 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
-.|+++|++||||||+.+.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.83 E-value=0.00083 Score=48.19 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..+|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.82 E-value=0.00075 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999976
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00077 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 028686 4 LLRIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~ 24 (205)
..|+|+|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 275
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.79 E-value=0.00065 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|+|||||++.+.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 276
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.78 E-value=0.0024 Score=43.82 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999988654
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.00086 Score=48.74 Aligned_cols=21 Identities=24% Similarity=0.165 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+++|++||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.77 E-value=0.00076 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998853
No 279
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.77 E-value=0.00096 Score=48.45 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..+.|+|.|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999865
No 280
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.77 E-value=0.00074 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998764
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.77 E-value=0.0007 Score=49.53 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 282
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.77 E-value=0.00063 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|+.|||||||++.+.+-.
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 283
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.77 E-value=0.0008 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998653
No 284
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.76 E-value=0.00071 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGSF 28 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~~ 28 (205)
.++|+|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478999999999999999998643
No 285
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.75 E-value=0.00079 Score=47.77 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.00095 Score=47.69 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 287
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.75 E-value=0.00081 Score=49.44 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.75 E-value=0.00087 Score=47.75 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|++.|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999864
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.73 E-value=0.00099 Score=47.73 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 290
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.73 E-value=0.0011 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.2
Q ss_pred cceEEEEECCCCCcHHHHHHHHHh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..++|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999964
No 291
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.73 E-value=0.00067 Score=48.32 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=16.5
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|....|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999864
No 292
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.72 E-value=0.00081 Score=50.49 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 293
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.72 E-value=0.00082 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|+.|||||||++.+.+..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.72 E-value=0.0008 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|+.|||||||++.+.+-.
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.71 E-value=0.00093 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.|+|+|++||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999998664
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.71 E-value=0.00096 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-++++|++|||||||+++|...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999864
No 297
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.70 E-value=0.00083 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|+.|||||||++.+.+-.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998753
No 298
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.70 E-value=0.0011 Score=51.32 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCcHHHHHHHHHh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
....|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999975
No 299
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.69 E-value=0.0012 Score=47.88 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999999764
No 300
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.68 E-value=0.00089 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
-++++|+.|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998753
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.67 E-value=0.0011 Score=51.79 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5799999999999999999864
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.67 E-value=0.00093 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.66 E-value=0.00083 Score=49.44 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.66 E-value=0.001 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4789999999999999998763
No 305
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.66 E-value=0.0009 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998753
No 306
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.66 E-value=0.0012 Score=46.29 Aligned_cols=21 Identities=19% Similarity=-0.097 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.66 E-value=0.00096 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998753
No 308
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.0012 Score=46.43 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 309
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.65 E-value=0.0013 Score=47.10 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=20.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 310
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.65 E-value=0.0011 Score=50.03 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 311
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.65 E-value=0.00096 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 36899999999999999998753
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.65 E-value=0.00098 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998753
No 313
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.64 E-value=0.0011 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999885
No 314
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.63 E-value=0.0015 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=21.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
....|++.|.+||||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998653
No 315
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.62 E-value=0.0012 Score=47.40 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 316
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.62 E-value=0.001 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 317
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.61 E-value=0.0012 Score=48.26 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.61 E-value=0.0012 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998865
No 319
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.61 E-value=0.0011 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998753
No 320
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.61 E-value=0.0013 Score=48.49 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 321
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.60 E-value=0.0011 Score=50.52 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999875
No 322
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.60 E-value=0.0012 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999885
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.00071 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|++|||||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999874
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.60 E-value=0.0011 Score=51.78 Aligned_cols=23 Identities=17% Similarity=-0.050 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.-|+|+|++|||||||++.|.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 45899999999999999998774
No 325
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.60 E-value=0.0011 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|+.|||||||++.+.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 326
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.59 E-value=0.0043 Score=45.02 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998763
No 327
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.59 E-value=0.00075 Score=50.23 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=14.7
Q ss_pred EEEEECCCCCcHHHHHHHHH-hC
Q 028686 5 LRIYFERGGVGKSCLLLRFS-DG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~-~~ 26 (205)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998 54
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.58 E-value=0.0012 Score=49.32 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 028686 6 RIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~ 24 (205)
++++|++|||||||++.++
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999999887
No 329
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.58 E-value=0.0014 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|++|||||||+|.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 46899999999999999998754
No 330
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.58 E-value=0.0015 Score=47.20 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=22.1
Q ss_pred cceEEEEECCCCCcHHHHHHHHHhC
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
....|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4577999999999999999999874
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.57 E-value=0.0011 Score=48.82 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
++|+|++|||||||++.+++.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 332
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.57 E-value=0.0011 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|+.|||||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998753
No 333
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.56 E-value=0.0014 Score=48.49 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.56 E-value=0.0015 Score=47.76 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 335
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.55 E-value=0.00046 Score=53.87 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 57999999999999999998753
No 336
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.54 E-value=0.0012 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998753
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.54 E-value=0.0013 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-+++|+|++|||||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 338
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.53 E-value=0.0014 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999874
No 339
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.53 E-value=0.0011 Score=46.03 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|++|+|||+|++.+.+.-
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 340
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.53 E-value=0.0013 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998753
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.52 E-value=0.0014 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|+|.|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 342
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.51 E-value=0.0017 Score=48.68 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=20.8
Q ss_pred cceEEEEECCCCCcHHHHHHHHHh
Q 028686 2 LFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 2 ~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..+.|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.50 E-value=0.0019 Score=47.13 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|+|.+||||||+.+.|...
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999774
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.49 E-value=0.0018 Score=46.45 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999866
No 345
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.48 E-value=0.0015 Score=50.86 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
-++++|++|||||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 46899999999999999998 53
No 346
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.47 E-value=0.0014 Score=49.57 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
...|+++|.+||||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999998653
No 347
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.46 E-value=0.0021 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999976
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.46 E-value=0.0013 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|+.|||||||++.|.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5799999999999999998774
No 349
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.46 E-value=0.0017 Score=48.85 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.-|+|+|+.|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999876
No 350
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.45 E-value=0.0017 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.45 E-value=0.0015 Score=48.26 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.44 E-value=0.002 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.43 E-value=0.0019 Score=45.87 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+.++|.+|||||||+.+|...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998763
No 354
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.42 E-value=0.0018 Score=48.80 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999999874
No 355
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.41 E-value=0.0021 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|++|+|||++++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 356
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.41 E-value=0.0018 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
++|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999864
No 357
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.39 E-value=0.0017 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999998864
No 358
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.39 E-value=0.0018 Score=46.67 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 359
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.39 E-value=0.0019 Score=48.88 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 360
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.37 E-value=0.002 Score=51.35 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999998864
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.35 E-value=0.00092 Score=48.87 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999865
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.34 E-value=0.0028 Score=45.97 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|+|.|.+||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 363
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.34 E-value=0.0021 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 6899999999999999998854
No 364
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.32 E-value=0.0027 Score=47.25 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+|+|+|.+||||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.31 E-value=0.0022 Score=49.99 Aligned_cols=84 Identities=15% Similarity=0.078 Sum_probs=45.2
Q ss_pred EEEEEeCCChhhhh------------hhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q 028686 53 KLQIWDTAGQERFR------------TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 120 (205)
Q Consensus 53 ~~~i~D~~g~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl 120 (205)
.+.+.|++|..... .+........+.++++.|........+ .+..+.... + ..+++++|.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~---~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE---QAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH---HHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH---HHHHHHHHc--C-CcEEEEECCcc
Confidence 35678999853211 111223345677888989876543222 223333222 1 34678899885
Q ss_pred CCCCCccCHHHHHHHHHHhCCcEEEEc
Q 028686 121 DESKRAVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (205)
.. . .-.+..+....+.|+..+.
T Consensus 260 ~a-~----gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TA-K----GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SC-C----CTTHHHHHHHHCCCEEEEE
T ss_pred cc-c----ccHHHHHHHHHCCCeEEEe
Confidence 32 1 1233455666777776665
No 366
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0022 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999998864
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.30 E-value=0.0024 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.258 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|+|+|++|||||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998764
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.30 E-value=0.0022 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 6899999999999999998864
No 369
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.29 E-value=0.0019 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999875
No 370
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.29 E-value=0.007 Score=49.58 Aligned_cols=58 Identities=26% Similarity=0.197 Sum_probs=36.9
Q ss_pred EEEECCCCCcHHHHHHHHHh------------------CCCCC---CcccceeeEEEEEEE--EE-CCEEEEEEEEeCCC
Q 028686 6 RIYFERGGVGKSCLLLRFSD------------------GSFTT---SFITTIGIDFKIRTI--EL-DGKRIKLQIWDTAG 61 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~------------------~~~~~---~~~~t~~~~~~~~~~--~~-~~~~~~~~i~D~~g 61 (205)
|.|+|..++|||+|+|.|+. ..|.. ....|.|+-.....+ .. ++..+.+.++||.|
T Consensus 70 vsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG 149 (457)
T 4ido_A 70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQG 149 (457)
T ss_dssp EEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECC
T ss_pred EEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccC
Confidence 56899999999999996642 12321 223355543322222 22 56778899999999
Q ss_pred hh
Q 028686 62 QE 63 (205)
Q Consensus 62 ~~ 63 (205)
..
T Consensus 150 ~~ 151 (457)
T 4ido_A 150 TF 151 (457)
T ss_dssp BT
T ss_pred CC
Confidence 54
No 371
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.28 E-value=0.0023 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 6899999999999999998864
No 372
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.28 E-value=0.0023 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 6899999999999999998854
No 373
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.27 E-value=0.0025 Score=47.19 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q 028686 6 RIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~ 25 (205)
|+|+|+|||||+|...+|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999998865
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.27 E-value=0.0022 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.101 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.-|+|+|.+||||||+++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999875
No 375
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.27 E-value=0.0029 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
+..|++.|.+||||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999976
No 376
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.27 E-value=0.0033 Score=44.68 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999876
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.26 E-value=0.0024 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 6899999999999999998754
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.26 E-value=0.0029 Score=48.02 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.26 E-value=0.0024 Score=50.31 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.26 E-value=0.0032 Score=49.42 Aligned_cols=24 Identities=17% Similarity=-0.136 Sum_probs=20.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
++-|+|+|++|||||||++.|...
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988653
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.25 E-value=0.0022 Score=50.03 Aligned_cols=23 Identities=17% Similarity=-0.034 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.-|+|+|++|||||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999773
No 382
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.24 E-value=0.0031 Score=47.67 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 028686 4 LLRIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~ 24 (205)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999997
No 383
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.23 E-value=0.002 Score=51.20 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCccHHHHHHHHHcCC
Confidence 6899999999999999998854
No 384
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.23 E-value=0.0034 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+|.|++|||||||++.|..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988754
No 385
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.22 E-value=0.0032 Score=44.20 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999865
No 386
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.22 E-value=0.0026 Score=49.47 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
-++++|+.||||||+++.|.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 387
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.21 E-value=0.0027 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999874
No 388
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.20 E-value=0.0029 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
++++|++|+|||||+..+...
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 688999999999999999854
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.19 E-value=0.0029 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|++||||||+++.|.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999763
No 390
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.19 E-value=0.0036 Score=47.22 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=20.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+.|+|.|.+||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 391
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.19 E-value=0.0027 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=21.0
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|..+.|++.|.+||||||+.+.|..
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 6677899999999999999998865
No 392
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.16 E-value=0.012 Score=42.42 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=55.8
Q ss_pred EEEEEEeCCChhhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhc--CCCCcEEEEEeCCCCCCCCCccCH
Q 028686 52 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPT 129 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~nK~Dl~~~~~~~~~ 129 (205)
+.+.++|+|+.. .......+..+|.++++...+... ..+..+++.+.... .++.++.+|.|+.|-.. ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~----~~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA----TML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE----EEE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc----hHH
Confidence 568899999865 233445566799999998876554 66666666665543 24578899999998421 233
Q ss_pred HHHHHHHHHhCCcEE
Q 028686 130 SKGQALADEYGIKFF 144 (205)
Q Consensus 130 ~~~~~~~~~~~~~~~ 144 (205)
.+..++.+.++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 455566666665544
No 393
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.16 E-value=0.0038 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=20.8
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|.. .|+|.|.+||||||+.+.|..
T Consensus 1 m~~-~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 1 MRG-IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp CCS-EEEEECSTTSSHHHHHHHHHH
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHH
Confidence 444 689999999999999999865
No 394
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.16 E-value=0.0026 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.++|.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988664
No 395
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.16 E-value=0.0029 Score=49.83 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=51.7
Q ss_pred EEEEEeCCChhhhhh-hh---hh--hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCc
Q 028686 53 KLQIWDTAGQERFRT-IT---TA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA 126 (205)
Q Consensus 53 ~~~i~D~~g~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~ 126 (205)
.+.++|++|...... +. .. ..-..|-.+++.|....+ ++......+.... -..+++++|.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 356789998643211 11 10 111367888999976653 2223333443322 23477889998522
Q ss_pred cCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686 127 VPTSKGQALADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
..-.+..+....+.|+..++ +|+++++
T Consensus 283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 -RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 12345566777888888887 6666654
No 396
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.15 E-value=0.0025 Score=50.23 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|++|||||||++.|.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
No 397
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.14 E-value=0.0026 Score=50.77 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|+.|||||||++.|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999875
No 398
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.008 Score=44.66 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
+.|++-|.++.|||.|++++++..
T Consensus 30 ilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 30 ILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred eEEEecCcccccHHHHHHHHhccc
Confidence 445555999999999999999874
No 399
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.11 E-value=0.0037 Score=46.16 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.++|.|++|+|||+|++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998763
No 400
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.10 E-value=0.0039 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.5
Q ss_pred ceEEEEECCCCCcHHHHHHHH
Q 028686 3 FLLRIYFERGGVGKSCLLLRF 23 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l 23 (205)
.+||+|+|.+|||||||++++
T Consensus 33 ~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHH
Confidence 589999999999999999886
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.10 E-value=0.0033 Score=47.37 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.+++.|++|+|||++++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 402
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.09 E-value=0.002 Score=51.34 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|++|||||||++.+.+-.
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999998864
No 403
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.08 E-value=0.0025 Score=47.38 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.-|+|.|..||||||+++.|.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999998775
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.07 E-value=0.004 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0035 Score=47.45 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 406
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.05 E-value=0.0032 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.285 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 3689999999999999999874
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.03 E-value=0.0052 Score=45.78 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|.|.+||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 408
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.02 E-value=0.0036 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|+.|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999874
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.02 E-value=0.004 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
..|++.|.+||||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 410
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.99 E-value=0.0042 Score=45.40 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999987
No 411
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.99 E-value=0.0035 Score=48.33 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
++|+|++|+|||||+..+.+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 412
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.96 E-value=0.0031 Score=49.41 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=21.1
Q ss_pred CcceE-EEEECCCCCcHHHHHHHHHhCC
Q 028686 1 MLFLL-RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 1 ~~~i~-i~v~G~~~~GKtsli~~l~~~~ 27 (205)
|..+. ++|+|..|||||||++.|.+..
T Consensus 1 m~~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp -CCEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CCcccEEEEEecCCCCHHHHHHHHHhhc
Confidence 44444 4678999999999999999753
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.94 E-value=0.0044 Score=46.03 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-++|+|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999999874
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.93 E-value=0.0042 Score=49.49 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
-|+++|+.||||||+++.|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 478999999999999999865
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.90 E-value=0.0059 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|++.|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999998763
No 416
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0037 Score=51.58 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|+|+.|||||||++.|++.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5799999999999999999875
No 417
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.88 E-value=0.004 Score=52.01 Aligned_cols=23 Identities=17% Similarity=-0.029 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|++||||||+++.|++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998753
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.87 E-value=0.0046 Score=49.09 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 419
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.87 E-value=0.0055 Score=47.09 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+.|+|.|.+||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999973
No 420
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.85 E-value=0.0057 Score=45.60 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
+++.|+|+|||||||+...|..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
No 421
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.84 E-value=0.0048 Score=51.20 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=48.3
Q ss_pred EEEEEEeCCChhhhhh----hhhhh---c-----cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686 52 IKLQIWDTAGQERFRT----ITTAY---Y-----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~---~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 119 (205)
+.+.++||+|...... ....+ + ...+-+++|.|.+..+... .....+.... + ...+|++|.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~--~-itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV--G-LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT--C-CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc--C-CCEEEEEcCC
Confidence 3477899999642111 01111 1 1245678898877653221 2223333322 1 2357889998
Q ss_pred CCCCCCccCHHHHHHHHHHhCCcEEEEcCCCCCCHHH
Q 028686 120 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 156 (205)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (205)
-. . ..-.+..+....+.++..+. +|+++++
T Consensus 450 ~t---a--kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 450 GT---A--KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GC---S--CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Cc---c--cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 52 1 22345666777788876643 3444443
No 422
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.84 E-value=0.0061 Score=41.82 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
..|++.|++|+|||++++.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997754
No 423
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.81 E-value=0.0052 Score=46.94 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999764
No 424
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.80 E-value=0.0051 Score=43.72 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q 028686 6 RIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~ 25 (205)
.+|+|+.|+|||||+..+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999865
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.80 E-value=0.0054 Score=46.11 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|++.|++|+|||++++.+...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999763
No 426
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.80 E-value=0.0053 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.+++.|++|+|||++++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 427
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.80 E-value=0.0056 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-++|.|++|+|||++++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998653
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.75 E-value=0.0046 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|+||+|||+++..+++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999888763
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.72 E-value=0.0059 Score=49.02 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.++++|++|+|||||++.|.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999986
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.71 E-value=0.0081 Score=46.91 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=22.1
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHhC
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
|+..-|+|+|++|||||+|...|...
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence 56667899999999999999999764
No 431
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.69 E-value=0.0061 Score=47.23 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|++.|++|+|||+|++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999999874
No 432
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.68 E-value=0.0057 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=19.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.-+++.|+||+|||+|++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999999999764
No 433
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.67 E-value=0.0082 Score=44.69 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=20.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
...|+|+|.+||||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 434
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.66 E-value=0.12 Score=40.17 Aligned_cols=21 Identities=14% Similarity=0.176 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 345566999999999999764
No 435
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.64 E-value=0.0064 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|++|+|||+|++.+.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998764
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.63 E-value=0.0063 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57999999999999999998864
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.57 E-value=0.0097 Score=46.67 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 438
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.50 E-value=0.0073 Score=46.19 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q 028686 6 RIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~ 25 (205)
++|+|++|+|||||+..++.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 439
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.49 E-value=0.0077 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
-++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 368999999999999999865
No 440
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.48 E-value=0.011 Score=43.51 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=20.9
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|.-.-|+|.|.+||||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4556789999999999999999854
No 441
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.46 E-value=0.0085 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|||||||++.|.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 442
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.45 E-value=0.0083 Score=46.34 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 028686 5 LRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~ 25 (205)
.++|.|++|+|||++++.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999986654
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.44 E-value=0.0079 Score=48.90 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.-|+++|.+||||||+.++|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999998753
No 444
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.44 E-value=0.0097 Score=45.21 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.+++.|++|+|||++++.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999774
No 445
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.0083 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-|++.|+||+|||+|++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 446
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0085 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.|++.|+||+|||+|++++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 447
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.40 E-value=0.0099 Score=47.30 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.4
Q ss_pred ceEEEEECCCCCcHHHHHHHH
Q 028686 3 FLLRIYFERGGVGKSCLLLRF 23 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l 23 (205)
.+||+++|.++|||||+++++
T Consensus 9 ~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 9 IRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred ceeEEEECCCCCcHHHHHHHH
Confidence 479999999999999999887
No 448
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.39 E-value=0.0092 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 449
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.0092 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|++.|+||+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 5899999999999999999874
No 450
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.35 E-value=0.008 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5799999999999999999875
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.35 E-value=0.011 Score=40.91 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.1
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 028686 6 RIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~ 24 (205)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999975
No 452
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0094 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
--|++.|+||+|||+|++++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999874
No 453
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.33 E-value=0.0093 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 454
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.32 E-value=0.011 Score=43.13 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998754
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.31 E-value=0.0087 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++++|+.|||||||++.|.+..
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998753
No 456
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.31 E-value=0.0098 Score=42.59 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999864
No 457
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.30 E-value=0.0089 Score=47.36 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|.|++|+|||+|++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 458
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.28 E-value=0.0095 Score=44.24 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q 028686 6 RIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~ 25 (205)
++++|++|+|||||+..++.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999887754
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.0084 Score=47.23 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q 028686 6 RIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~ 25 (205)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999877
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.013 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
-++++|+.|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 37899999999999999998754
No 461
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.26 E-value=0.012 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.|++.|+||+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999764
No 462
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.22 E-value=0.011 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|++|+|||++++.+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999998764
No 463
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.011 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-|++.|+||+|||+|++.+.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 5899999999999999999874
No 464
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.22 E-value=0.012 Score=45.74 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.+++.|++|+|||+|+..+...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988763
No 465
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.011 Score=46.53 Aligned_cols=21 Identities=14% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998775
No 466
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.21 E-value=0.01 Score=45.98 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=46.3
Q ss_pred EEEEEEeCCChhhhhh--h--hhhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCC
Q 028686 52 IKLQIWDTAGQERFRT--I--TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 125 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~ 125 (205)
..+.++||+|...... + ....+. ..+..++|+|.+.. ...+.++.+.+.. -+ ..-+|.||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~--- 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT--- 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence 4588999999654321 1 112232 35677888877642 2333333333321 11 2346679999642
Q ss_pred ccCHHHHHHHHHHhCCcEEEEc
Q 028686 126 AVPTSKGQALADEYGIKFFETS 147 (205)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~S 147 (205)
....+..+....++|+..++
T Consensus 254 --~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 --SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CCHHHHHHHHTCSCCCSEEC
T ss_pred --chhHHHHHHHHHCcCEEEEE
Confidence 12355666777787765554
No 467
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.20 E-value=0.011 Score=47.00 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|.|++|+|||+|++.+.+.-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997643
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.19 E-value=0.0083 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.17 E-value=0.0088 Score=45.30 Aligned_cols=24 Identities=13% Similarity=-0.107 Sum_probs=20.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
...|+|.|.+||||||+++.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999988654
No 470
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.16 E-value=0.015 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+|+++|++|+||||+...|..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999987754
No 471
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.16 E-value=0.012 Score=45.83 Aligned_cols=86 Identities=21% Similarity=0.180 Sum_probs=47.6
Q ss_pred EEEEEEeCCChhhhhh-h------hhhhc-----cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCC
Q 028686 52 IKLQIWDTAGQERFRT-I------TTAYY-----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 119 (205)
Q Consensus 52 ~~~~i~D~~g~~~~~~-~------~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 119 (205)
..+.++|+||...... + ....+ ...+.+++|.|..... +.+.+ ...+.... -..-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~---~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV---NVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence 3478999998532111 0 01111 2477888999887432 22222 22333221 13356789999
Q ss_pred CCCCCCccCHHHHHHHHHHhCCcEEEEcC
Q 028686 120 MDESKRAVPTSKGQALADEYGIKFFETSA 148 (205)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (205)
... ..-.+..+....+.|+..+..
T Consensus 261 ~~~-----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA-----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS-----CTTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc-----chHHHHHHHHHHCCCEEEEeC
Confidence 532 123467777888888777754
No 472
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.15 E-value=0.013 Score=43.83 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=20.6
Q ss_pred CcceEEEEECCCCCcHHHHHHHHHh
Q 028686 1 MLFLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 1 ~~~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
|...-|+|.|.+||||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999854
No 473
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.14 E-value=0.0092 Score=50.84 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999999774
No 474
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.13 E-value=0.0057 Score=46.32 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999763
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.08 E-value=0.012 Score=50.18 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++++|+.|+|||||++.|.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999998754
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.07 E-value=0.013 Score=45.99 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 477
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.06 E-value=0.017 Score=45.54 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|+|.|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999998653
No 478
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.05 E-value=0.012 Score=49.58 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|+.|||||||++.|.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998854
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.05 E-value=0.012 Score=46.71 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHhC
Q 028686 6 RIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~ 26 (205)
+.|+|++|+|||||+..++..
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.99 E-value=0.015 Score=48.97 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|+.|||||||++.|.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
No 481
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.99 E-value=0.014 Score=46.32 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|+|.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999764
No 482
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.98 E-value=0.0088 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=17.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHh
Q 028686 3 FLLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 3 ~i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999865
No 483
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.98 E-value=0.012 Score=46.65 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|.|++|+|||++++.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.97 E-value=0.013 Score=46.45 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++|.|+||+|||++++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 485
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.96 E-value=0.0083 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|+.|||||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999988764
No 486
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.96 E-value=0.014 Score=46.56 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHH
Q 028686 6 RIYFERGGVGKSCLLLRFS 24 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~ 24 (205)
.+|+|+.|||||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999999986
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.96 E-value=0.014 Score=49.87 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhCC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.95 E-value=0.017 Score=43.06 Aligned_cols=23 Identities=17% Similarity=-0.000 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
..|++-|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998754
No 489
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.95 E-value=0.014 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-+++++|+||+|||++++.|...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988654
No 490
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.93 E-value=0.015 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=16.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHh
Q 028686 4 LLRIYFERGGVGKSCLLLRFSD 25 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~ 25 (205)
.-|+|.|.+||||||+++.|..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
No 491
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.015 Score=47.35 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-|++.|+||+|||+|++++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 5899999999999999999874
No 492
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.013 Score=45.88 Aligned_cols=23 Identities=17% Similarity=-0.047 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.++|.|+||+|||++++.++..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 493
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.90 E-value=0.015 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|++|+|||+|++.+.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 494
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.89 E-value=0.011 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999988764
No 495
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.85 E-value=0.15 Score=37.03 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=54.8
Q ss_pred EEEEEEeCCCh-hhhhhhhhhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCCCCCCccCHH
Q 028686 52 IKLQIWDTAGQ-ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS 130 (205)
Q Consensus 52 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~Dl~~~~~~~~~~ 130 (205)
+.+.++|+|+. ... .....+..+|.+|++...+ ..++..+..+++.+.... +.++.+|.|+.|-... . ..+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~-~~~ 139 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--K-DGD 139 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--C-HHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--h-HHH
Confidence 45889999976 432 2334566799888887765 556777777777776543 4678899999985320 1 234
Q ss_pred HHHHHHHHhCCcEE
Q 028686 131 KGQALADEYGIKFF 144 (205)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (205)
+..+..++++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 55555555665544
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.84 E-value=0.016 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.|++.|++|+|||++++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.83 E-value=0.017 Score=45.92 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHhC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~ 26 (205)
-.|+|.|++|+|||+|++.+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 498
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.016 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHhCC
Q 028686 6 RIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 6 i~v~G~~~~GKtsli~~l~~~~ 27 (205)
++|+|+.|+|||||++.|.+..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998865
No 499
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.81 E-value=0.013 Score=45.73 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhC
Q 028686 5 LRIYFERGGVGKSCLLLRFSDG 26 (205)
Q Consensus 5 ~i~v~G~~~~GKtsli~~l~~~ 26 (205)
.+++.|+||+|||+|++.+...
T Consensus 48 ~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998763
No 500
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.80 E-value=0.019 Score=43.41 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Q 028686 4 LLRIYFERGGVGKSCLLLRFSDGS 27 (205)
Q Consensus 4 i~i~v~G~~~~GKtsli~~l~~~~ 27 (205)
..|++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 358999999999999999998754
Done!