BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028689
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BV7|A Chain A, Crystal Structure Of Gltp With Bound Gm3
Length = 208
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 17 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVE 76
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE-----GNSLKDPASKAYTQVF 138
+++ G K G+ T L+ +KRGL ++V + I E N ++ A+KAY
Sbjct: 77 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 135
Query: 139 APHHGWAIRKAVAAGMYALPTRAQLLRKLNEDET 172
+HGW ++K A +YA P ++ L+ L++ +
Sbjct: 136 KKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQN 169
>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
Length = 209
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 18 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVE 77
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE-----GNSLKDPASKAYTQVF 138
+++ G K G+ T L+ +KRGL ++V + I E N ++ A+KAY
Sbjct: 78 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 136
Query: 139 APHHGWAIRKAVAAGMYALPTRAQLLRKLNEDET 172
+HGW ++K A +YA P ++ L+ L++ +
Sbjct: 137 KKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQN 170
>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein
pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein Complexed With 3-O-Sulfo
Galactosylceramide Containing Nervonoyl Acyl Chain
Length = 209
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 30 DVELAAFSRACSYVSPLFGCLG----IAFKFAEMDYVAKVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG K + K+ + + + + TLQ++ +
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE-----GNSLKDPASKAYTQV 137
++++ G K G+ T L+ +KRGL ++V + I E N ++ A+KAY
Sbjct: 77 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMA 135
Query: 138 FAPHHGWAIRKAVAAGMYALPTRAQLLRKLNEDET 172
+HGW ++K A +YA P ++ L+ L++ +
Sbjct: 136 LKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQN 170
>pdb|1TFJ|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In
Complex With A Fatty Acid
Length = 219
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 28 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVE 87
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE-----GNSLKDPASKAYTQVF 138
+++ G K G+ T L+ +KRGL ++V + I E N ++ A+KAY
Sbjct: 88 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 146
Query: 139 APHHGWAIRKAVAAGMYALPTRAQLLRKLNEDET 172
+HGW ++K A +YA P ++ L+ L++ +
Sbjct: 147 KKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQN 180
>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
In Apo-Form
pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
Lactosylceramide-Bound Form
pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 24:1 Galactosylceramide
pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 8:0 Lactosylceramide
pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 12:0 Lactosylceramide
pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 18:2 Galactosylceramide
pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 3-O-Sulfo-Galactosylceramide Containing
Nervonoyl Acyl Chain (24:1)
pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With Glucosylceramide Containing Oleoyl Acyl
Chain (18:1)
Length = 209
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 18 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVE 77
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE-----GNSLKDPASKAYTQVF 138
+++ G K G+ T L+ +KRGL ++V + I E N ++ A+KAY
Sbjct: 78 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 136
Query: 139 APHHGWAIRKAVAAGMYALPTRAQLLRKLNEDET 172
+HGW ++K A +YA P ++ L+ L++ +
Sbjct: 137 KKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQN 170
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 13/154 (8%)
Query: 31 VELAAFSRACSYVSPLFGCLGIAFKFAEMDYVA----KVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG D ++ K+ + + + + TLQ++ ++
Sbjct: 18 IETGPFLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEVE 77
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE-----GNSLKDPASKAYTQVF 138
+++ G K G+ T L+ +KRGL ++V + I E N ++ A+KAY
Sbjct: 78 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 136
Query: 139 APHHGWAIRKAVAAGMYALPTRAQLLRKLNEDET 172
+HGW ++K A +YA P ++ L+ L++ +
Sbjct: 137 KKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQN 170
>pdb|2I3F|A Chain A, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2I3F|B Chain B, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2Q52|A Chain A, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
pdb|2Q52|B Chain B, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
Length = 224
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 8/173 (4%)
Query: 31 VELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSIL--TLQSVIDRDIEG 88
V L F A V + G F+ + D + L A++++ TLQ +I I
Sbjct: 30 VPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYRANQTVHAETLQELI---IAE 86
Query: 89 NCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRK 148
N G T LL +KR + +++ + SL+ ++AY P H I+K
Sbjct: 87 N--SPDGLATVALLWLKRAFQFIASFLRRLVVTD-KSLEQCVTEAYNCTLRPCHSAVIQK 143
Query: 149 AVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSREL 201
G+ P+R + RKL+ D A+ ++++++ + I + F REL
Sbjct: 144 VFWGGVKLAPSRERFYRKLHPDLNIAKAKIEEFLIELHDPLCCIVQFFFQREL 196
>pdb|3KV0|A Chain A, Crystal Structure Of Het-C2: A Fungal Glycolipid Transfer
Pr (Gltp)
Length = 209
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 4/172 (2%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDYVAKVDDL-AEASKSILTLQSVIDRDIEG 88
+ A F A ++ +F LG IAF D + V+ + + L Q++ D +
Sbjct: 37 ISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNIQDL-VRN 95
Query: 89 NCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRK 148
+ + T LL + RGL+ + + + L D +Y PHH + +
Sbjct: 96 ELXTXSHTATEGLLWLVRGLEFTCIALSXNIGST-EELADSFRGSYRVTLXPHHSFLVXP 154
Query: 149 AVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRE 200
+A M A P R L +DE + ++++Y+ ++ + + S E
Sbjct: 155 IFSAAMSACPYRXDFYAXLGDDEQXVQEELREYLVALDXIVNILXRFLESXE 206
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 48 GCLGIAFKFAEMDY----VAKVDDLAEASKSILTLQSVIDRDIEG 88
G +GI+ +E D AK D+ E K + T+QSV RDIEG
Sbjct: 1 GAMGISLGNSEADRQLLEAAKAGDV-ETVKKLCTVQSVNCRDIEG 44
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 159 TRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDK 194
T L+R+ +++E + +I++Q Y T + P+I Y K
Sbjct: 169 TGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRK 204
>pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine
Synthase
Length = 530
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 49 CLGIAFKFAEMDYVAKVDDLAEAS 72
CLGI +F E D++ KV EAS
Sbjct: 113 CLGILQEFCEKDFIKKVCQKVEAS 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,270,072
Number of Sequences: 62578
Number of extensions: 177735
Number of successful extensions: 392
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 11
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)