Query 028689
Match_columns 205
No_of_seqs 110 out of 430
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 15:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08718 GLTP: Glycolipid tran 100.0 6.1E-50 1.3E-54 318.4 12.9 142 29-170 1-148 (149)
2 KOG4189 Uncharacterized conser 100.0 2.1E-48 4.5E-53 314.6 20.2 204 2-205 2-209 (209)
3 KOG3221 Glycolipid transfer pr 100.0 7.9E-49 1.7E-53 317.9 16.4 179 25-204 12-197 (199)
4 PF00036 EF-hand_1: EF hand; 49.3 16 0.00036 20.6 2.0 28 13-43 2-29 (29)
5 PF09409 PUB: PUB domain; Int 45.6 50 0.0011 23.2 4.5 40 104-143 6-48 (87)
6 PRK14161 heat shock protein Gr 41.2 65 0.0014 26.3 5.1 54 149-202 68-121 (178)
7 PF13496 DUF4120: Domain of un 39.8 9.5 0.00021 27.7 -0.0 13 134-146 81-93 (95)
8 PF04711 ApoA-II: Apolipoprote 39.6 1.3E+02 0.0029 21.1 5.7 52 11-62 16-69 (76)
9 PRK14148 heat shock protein Gr 35.8 95 0.0021 25.8 5.3 53 148-202 88-140 (195)
10 PRK10626 hypothetical protein; 34.9 95 0.0021 26.7 5.3 61 128-192 70-134 (239)
11 PF14516 AAA_35: AAA-like doma 34.2 86 0.0019 27.7 5.2 54 130-185 222-275 (331)
12 PRK14155 heat shock protein Gr 32.9 1.2E+02 0.0026 25.5 5.5 55 148-202 61-116 (208)
13 PRK14154 heat shock protein Gr 31.9 1.2E+02 0.0026 25.5 5.4 54 148-202 100-153 (208)
14 PRK14145 heat shock protein Gr 31.5 1E+02 0.0022 25.7 4.8 50 148-202 93-142 (196)
15 COG0576 GrpE Molecular chapero 31.5 70 0.0015 26.4 3.9 52 150-202 86-137 (193)
16 PRK14150 heat shock protein Gr 31.4 1.2E+02 0.0026 25.1 5.2 54 148-202 86-139 (193)
17 PF10400 Vir_act_alpha_C: Viru 29.9 1.9E+02 0.004 19.9 5.7 41 158-198 2-46 (90)
18 COG3636 Predicted transcriptio 29.6 1.9E+02 0.0041 21.5 5.4 57 106-171 18-74 (100)
19 PRK14147 heat shock protein Gr 29.6 1.6E+02 0.0034 23.9 5.5 50 149-202 67-116 (172)
20 PF11553 DUF3231: Protein of u 29.0 1.2E+02 0.0026 23.9 4.7 33 170-202 44-76 (166)
21 cd00446 GrpE GrpE is the adeni 28.7 1.1E+02 0.0024 23.4 4.3 52 149-202 34-85 (137)
22 PRK14139 heat shock protein Gr 28.0 1.9E+02 0.004 23.9 5.7 49 150-202 82-130 (185)
23 PF13959 DUF4217: Domain of un 27.9 25 0.00055 23.7 0.5 40 112-152 3-43 (65)
24 PRK14151 heat shock protein Gr 27.6 1.6E+02 0.0035 24.0 5.3 53 149-202 69-121 (176)
25 PF09373 PMBR: Pseudomurein-bi 27.4 78 0.0017 18.3 2.5 26 28-53 2-27 (33)
26 PRK14153 heat shock protein Gr 26.4 1.7E+02 0.0036 24.4 5.2 53 148-202 81-133 (194)
27 PRK14162 heat shock protein Gr 25.8 1.8E+02 0.0038 24.2 5.3 53 148-202 87-139 (194)
28 PHA02360 hypothetical protein 25.4 71 0.0015 21.9 2.3 18 186-203 29-46 (70)
29 KOG2427 Uncharacterized conser 23.2 50 0.0011 30.4 1.7 64 138-201 133-206 (391)
30 PF07787 DUF1625: Protein of u 23.0 1.2E+02 0.0026 25.7 3.9 35 75-118 165-199 (248)
31 PF06840 DUF1241: Protein of u 23.0 97 0.0021 24.9 3.1 29 158-197 113-141 (154)
32 PRK14141 heat shock protein Gr 22.6 2.2E+02 0.0048 23.9 5.3 55 148-202 79-137 (209)
33 PF07889 DUF1664: Protein of u 22.3 3.6E+02 0.0078 20.8 6.1 52 35-86 40-91 (126)
34 PRK14159 heat shock protein Gr 22.2 2.2E+02 0.0048 23.2 5.1 53 148-202 71-123 (176)
35 PRK14149 heat shock protein Gr 22.1 2E+02 0.0043 23.8 4.9 53 148-202 84-136 (191)
36 KOG1648 Uncharacterized conser 22.1 3.1E+02 0.0067 26.6 6.6 95 45-146 70-168 (813)
37 PRK14146 heat shock protein Gr 21.3 2.3E+02 0.0049 23.9 5.2 54 147-202 101-154 (215)
38 PRK14158 heat shock protein Gr 21.1 2.4E+02 0.0052 23.4 5.2 52 148-202 88-139 (194)
39 PF04424 DUF544: Protein of un 20.9 27 0.0006 26.5 -0.4 10 138-147 87-96 (121)
40 PRK14160 heat shock protein Gr 20.8 2.5E+02 0.0054 23.7 5.3 51 147-202 108-158 (211)
41 PF13405 EF-hand_6: EF-hand do 20.2 1.3E+02 0.0028 16.5 2.5 27 12-41 1-27 (31)
No 1
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=100.00 E-value=6.1e-50 Score=318.38 Aligned_cols=142 Identities=32% Similarity=0.626 Sum_probs=130.4
Q ss_pred CCCChHHHHHHHhHHhhHHhhhchhhHHHHHHHHHhHHHHHH-----cchhcchHHHHHHHHHhcCccccCCccchhHHH
Q 028689 29 ADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE-----ASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLR 103 (205)
Q Consensus 29 ~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~D~~~ki~~l~~-----~~~~~~tL~~mv~~E~~~~~~~~~~S~t~~LLw 103 (205)
++|++.+||++|++|++|||.||++|+||++||.+||++|++ +|++|.||++||++|+++|+.++++||+++|||
T Consensus 1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw 80 (149)
T PF08718_consen 1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW 80 (149)
T ss_dssp SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence 479999999999999999999999999999999999999965 467899999999999999998888899999999
Q ss_pred HhhHHHHHHHHHHHHHhcCCC-CcchHHHHHHHhhcccCCchHHHHHHHHHhhcCCCHHHHHHHhccC
Q 028689 104 VKRGLDMVRVLFEQILAAEGN-SLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLNED 170 (205)
Q Consensus 104 L~RaL~Fi~~~l~~l~~~~~~-~l~~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~P~R~~fl~~l~~~ 170 (205)
|||||+|++.||+++.+++++ +++++|++||++||+|||||+||++|++||+++|+|++|+++++++
T Consensus 81 L~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 148 (149)
T PF08718_consen 81 LHRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLAPYHGWIVRKAFKLALKALPSRSDFLKKLGGN 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTGGGB-HHHHHHHHHHHHT--BHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC
Confidence 999999999999999998765 4999999999999999999999999999999999999999999875
No 2
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-48 Score=314.59 Aligned_cols=204 Identities=44% Similarity=0.657 Sum_probs=186.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhccCCCCCChHHHHHHHhHHhhHHhhhchhhHHHHHHHHHhHHHHHH-cchhcchHHH
Q 028689 2 AGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE-ASKSILTLQS 80 (205)
Q Consensus 2 ~~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~D~~~ki~~l~~-~~~~~~tL~~ 80 (205)
.+++-..++.++.+.|+-+..++..++++|++.+|+.||+++++||++||++|+||.+|+..||+.|.+ +.+...|+..
T Consensus 2 ~~~~~~~~~~~i~~~~~~i~~~v~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et~rt 81 (209)
T KOG4189|consen 2 FCMEQLGPLPKILQAFKTIEKSVIEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPETYRT 81 (209)
T ss_pred cchhhccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 355667789999999999988887788889999999999999999999999999999999999999966 3344667777
Q ss_pred HHHHHHhcCccccCC--ccchhHHHHhhHHHHHHHHHHHHHhcC-CCCcchHHHHHHHhhcccCCchHHHHHHHHHhhcC
Q 028689 81 VIDRDIEGNCVRKAG--SHTRNLLRVKRGLDMVRVLFEQILAAE-GNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYAL 157 (205)
Q Consensus 81 mv~~E~~~~~~~~~~--S~t~~LLwL~RaL~Fi~~~l~~l~~~~-~~~l~~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~ 157 (205)
|++.+.+....++++ ||||+||||+|||+|+..||..+..++ +++++++|++||++||+|||||+||+++++||+++
T Consensus 82 ild~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD~s~~diakesYd~~lakhHsW~IRtAV~~amYtL 161 (209)
T KOG4189|consen 82 ILDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFASTNDESLKDIAKESYDKTLAKHHSWAIRTAVAAAMYTL 161 (209)
T ss_pred HHHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhccccHHHHHHHHHHHHhC
Confidence 777777776666566 999999999999999999999999885 68999999999999999999999999999999999
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 028689 158 PTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELGIDW 205 (205)
Q Consensus 158 P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~~~~ 205 (205)
|+|.+|+..++++.+.+.+.|+.+....++++.+++.+|+.+++.-||
T Consensus 162 PTR~~lL~~Lk~d~~~~~~~~~~~~~~~r~ii~~~~~l~~~~~l~~~~ 209 (209)
T KOG4189|consen 162 PTRPELLCRLKEDMDAANQNMQSYNRDSRPIIRRVDKLYELFELTDDW 209 (209)
T ss_pred CCcHHHHHHHHhHHHHHHHHHHHHHHccChHHHHHhHHHHHhccccCC
Confidence 999999999999999999999999999999999999999999999998
No 3
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-49 Score=317.86 Aligned_cols=179 Identities=21% Similarity=0.383 Sum_probs=168.6
Q ss_pred ccCCCCCChHHHHHHHhHHhhHHhhhchhhHHHHHHHHHhHHHHHH----cchhcchHHHHHHHHHhcCccccCCccchh
Q 028689 25 NSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE----ASKSILTLQSVIDRDIEGNCVRKAGSHTRN 100 (205)
Q Consensus 25 ~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~D~~~ki~~l~~----~~~~~~tL~~mv~~E~~~~~~~~~~S~t~~ 100 (205)
.+++++|+|.+||+||.+|+||+|+||++|+||++||+|||+++.+ ++.+++||+.+|+.|++....+ ++|||++
T Consensus 12 l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~a 90 (199)
T KOG3221|consen 12 LPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATLA 90 (199)
T ss_pred CCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhHH
Confidence 4678999999999999999999999999999999999999999865 5789999999999999998777 8899999
Q ss_pred HHHHhhHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhcccCCchHHHHHHHHHhhcCCCHHHHHHHhc---cCHHHHHHH
Q 028689 101 LLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLN---EDETSARIQ 177 (205)
Q Consensus 101 LLwL~RaL~Fi~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~P~R~~fl~~l~---~~e~~~~~~ 177 (205)
||||+|||+|++.||+++.++.+..++.++.+||++||+||||||+|++|++|++++|+|++|++.++ ++.++..++
T Consensus 91 LLWLkRgldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~als~~d~t~~~~~ed 170 (199)
T KOG3221|consen 91 LLWLKRGLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLKALSAGDETYDECIED 170 (199)
T ss_pred HHHHHhHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999877779999999999999999999999999999999999999999996 456677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 028689 178 MQDYITTSAPVILYIDKLFLSRELGID 204 (205)
Q Consensus 178 l~~~~~~~~~v~~~i~~l~~~~~l~~~ 204 (205)
++.++..+.+.++.|..+|+++|++-+
T Consensus 171 i~~fl~~~~~~L~~i~~~l~~~~ld~~ 197 (199)
T KOG3221|consen 171 ITSFLSLLTPILKEIYFVLEQYGLDDL 197 (199)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 999999999999999999999999754
No 4
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=49.27 E-value=16 Score=20.57 Aligned_cols=28 Identities=14% Similarity=0.443 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhccCCCCCChHHHHHHHhHH
Q 028689 13 ISESFKELAATVNSQAADVELAAFSRACSYV 43 (205)
Q Consensus 13 ~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l 43 (205)
+...|+... .+.+|.|+.++|..+++.+
T Consensus 2 ~~~~F~~~D---~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFD---KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHS---TTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHC---CCCCCcCCHHHHHHHHHhC
Confidence 456677652 3568889999999988753
No 5
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=45.64 E-value=50 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.407 Sum_probs=32.6
Q ss_pred HhhHHHHHHHHHHHHHhcCC-CCcch--HHHHHHHhhcccCCc
Q 028689 104 VKRGLDMVRVLFEQILAAEG-NSLKD--PASKAYTQVFAPHHG 143 (205)
Q Consensus 104 L~RaL~Fi~~~l~~l~~~~~-~~l~~--~~~~AY~~tL~~yH~ 143 (205)
..++++.+...+.+++..|+ ++.+. ....++.+.+.++||
T Consensus 6 ~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g 48 (87)
T PF09409_consen 6 FQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPG 48 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChh
Confidence 46789999999999999885 44443 567899999999998
No 6
>PRK14161 heat shock protein GrpE; Provisional
Probab=41.25 E-value=65 Score=26.33 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=40.6
Q ss_pred HHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 149 AVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 149 ~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.-+++-..+|--++|=+.+.....+....+..++..++-+++.+.+.|+++|++
T Consensus 68 ~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~ 121 (178)
T PRK14161 68 IATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELDKVFHKHHIE 121 (178)
T ss_pred HHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 445677888999999888753211111236778999999999999999999984
No 7
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=39.83 E-value=9.5 Score=27.65 Aligned_cols=13 Identities=38% Similarity=1.221 Sum_probs=10.4
Q ss_pred HHhhcccCCchHH
Q 028689 134 YTQVFAPHHGWAI 146 (205)
Q Consensus 134 Y~~tL~~yH~w~v 146 (205)
+.-+|.|+|||.|
T Consensus 81 fav~~~pfhgw~i 93 (95)
T PF13496_consen 81 FAVMLGPFHGWSI 93 (95)
T ss_pred eEEEecCcccccc
Confidence 3467899999976
No 8
>PF04711 ApoA-II: Apolipoprotein A-II (ApoA-II); InterPro: IPR006801 Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge []. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear []. In bovine serum, the ApoA-II homologue is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS) [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1L6L_W 2OU1_E.
Probab=39.61 E-value=1.3e+02 Score=21.09 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCChHHHHH-HHhHHhhHHhhhch-hhHHHHHHHH
Q 028689 11 TKISESFKELAATVNSQAADVELAAFSR-ACSYVSPLFGCLGI-AFKFAEMDYV 62 (205)
Q Consensus 11 ~~~~~~f~~~~~~~~~~~~~i~~~~fl~-a~~~l~~~~d~lG~-~f~~v~~D~~ 62 (205)
..|+.-++.+.-.+.++.-.-....|.+ .-..+.|+..+.|+ ++.|..+=|.
T Consensus 16 qt~TdYgKDL~Ekvk~pElqsQakaYfektqeQltPlvkKagtdl~nflS~~v~ 69 (76)
T PF04711_consen 16 QTVTDYGKDLVEKVKGPELQSQAKAYFEKTQEQLTPLVKKAGTDLMNFLSSFVE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHSHHTSSTCHHHHHHHHHHHHHHHHGGHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhc
Confidence 4555666666555544433344566766 66789999999998 8899876654
No 9
>PRK14148 heat shock protein GrpE; Provisional
Probab=35.82 E-value=95 Score=25.81 Aligned_cols=53 Identities=6% Similarity=-0.048 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
...+++-..+|--++|-+.+...... ..+..++..++-+++.+.+.|.++|+.
T Consensus 88 a~~~~~~~LLpV~DnlerAl~~~~~~--~~~~~l~~Gv~mi~k~l~~vL~k~Gv~ 140 (195)
T PRK14148 88 GIEKFAKELLPVIDSIEQALKHEVKL--EEAIAMKEGIELTAKMLVDILKKNGVE 140 (195)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc--hhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 44567788899999999988642211 235778999999999999999999984
No 10
>PRK10626 hypothetical protein; Provisional
Probab=34.95 E-value=95 Score=26.71 Aligned_cols=61 Identities=15% Similarity=0.092 Sum_probs=40.0
Q ss_pred hHHHHHHHhhcccCCchHHHHHHHHHhhcCCCHHHHHHH----hccCHHHHHHHHHHHHHHHHHHHHHH
Q 028689 128 DPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRK----LNEDETSARIQMQDYITTSAPVILYI 192 (205)
Q Consensus 128 ~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~P~R~~fl~~----l~~~e~~~~~~l~~~~~~~~~v~~~i 192 (205)
..+-+.|...|+.+=||+++-+-.-.=.+ .+.+.. .-+++..++..|.++...++.-+++|
T Consensus 70 qq~~~~Yq~~lr~~lP~i~~~a~~~l~~A----~~alD~Vi~~~~G~~snvr~rl~~l~~~l~~q~~~i 134 (239)
T PRK10626 70 RQQAKDYQAALRQDLPWIDEGAKSRLEKA----RVALDKVIVQELGESSNVRNRLTKLDAQLKQQMNRI 134 (239)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHH----HHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999987654332222 222222 22345566677888888877777664
No 11
>PF14516 AAA_35: AAA-like domain
Probab=34.17 E-value=86 Score=27.73 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=33.7
Q ss_pred HHHHHHhhcccCCchHHHHHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHH
Q 028689 130 ASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTS 185 (205)
Q Consensus 130 ~~~AY~~tL~~yH~w~vR~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~ 185 (205)
..+-|+-| .-|||+||++.......--+-+++++.-..+...-..+++.....+
T Consensus 222 ~~~l~~~t--gGhP~Lv~~~~~~l~~~~~~~~~l~~~a~~~~~~~~~hL~~l~~~L 275 (331)
T PF14516_consen 222 LEQLMDWT--GGHPYLVQKACYLLVEEQITLEQLLEEAITDNGIYNDHLDRLLDRL 275 (331)
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHccCcHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45555444 5599999999999988665666777654332222334555555544
No 12
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.89 E-value=1.2e+02 Score=25.47 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDE-TSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e-~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
..-+++..++|-.++|-+.+.... +.....+..++..++-+++.+..+|+++|++
T Consensus 61 a~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k~~~~~L~k~GV~ 116 (208)
T PRK14155 61 AIQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEKELLGAFERNGLK 116 (208)
T ss_pred HHHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 345667788999999988886421 1111346788999999999999999999985
No 13
>PRK14154 heat shock protein GrpE; Provisional
Probab=31.92 E-value=1.2e+02 Score=25.47 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
..-+++-.++|-.++|=+.+..... ....+..+...++-+++.+.+.|+++|+.
T Consensus 100 a~e~~~~~LLpVlDnLeRAL~~~~~-~~~~~~~l~eGvemi~k~l~~vL~k~GVe 153 (208)
T PRK14154 100 GSKQLITDLLPVADSLIHGLESPAS-EDPQVKSMRDGMSLTLDLLHNTLAKHGVQ 153 (208)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc-cchhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 4556778889999999888863211 01245778999999999999999999985
No 14
>PRK14145 heat shock protein GrpE; Provisional
Probab=31.55 E-value=1e+02 Score=25.67 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.+-+++..++|-.++|-+.+.... ....+...++-+++.+.+.|.++|++
T Consensus 93 a~e~~~~~LLpV~DnLerAl~~~~-----~~~~l~~Gv~mi~k~l~~vL~k~GVe 142 (196)
T PRK14145 93 GKEQVILELLPVMDNFERALASSG-----DYNSLKEGIELIYRQFKKILDKFGVK 142 (196)
T ss_pred HHHHHHHHHHhHHhHHHHHHhccc-----cHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 445677888999999998886532 23557889999999999999999984
No 15
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=31.49 E-value=70 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=39.6
Q ss_pred HHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 150 VAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 150 ~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
-+++...+|.-+.|-+.+..-+...... ..++..++-+++.+.+.|.++|++
T Consensus 86 e~~~~dlLpviDnlerAl~~~~~~~d~~-~~l~~Gvem~~~~l~~~L~k~Gv~ 137 (193)
T COG0576 86 EKFAKDLLPVIDNLERALEAAEDDKDPE-KALLEGVEMTLDQLLDALEKLGVE 137 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHHHHHHHCCCE
Confidence 3567788999999999976421111112 778999999999999999999984
No 16
>PRK14150 heat shock protein GrpE; Provisional
Probab=31.35 E-value=1.2e+02 Score=25.06 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
..-+++-..+|-.++|=+.+..... ....+..++..++-+++.+.+.|.+||+.
T Consensus 86 a~~~~~~~lL~v~DnlerAl~~~~~-~~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~ 139 (193)
T PRK14150 86 ALEKFANELLPVIDNLERALQAADK-ENEALKALIEGVELTLKSLLDTVAKFGVE 139 (193)
T ss_pred HHHHHHHHHHhHHhHHHHHHhcccc-cchhHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 5567788889999999888753110 01246778999999999999999999984
No 17
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=29.91 E-value=1.9e+02 Score=19.87 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028689 158 PTRAQLLRKLN----EDETSARIQMQDYITTSAPVILYIDKLFLS 198 (205)
Q Consensus 158 P~R~~fl~~l~----~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~ 198 (205)
|.|+.|+-++- .+.+.+...|.+.....+..+..++.+...
T Consensus 2 ~~Rde~LlKlff~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 46 (90)
T PF10400_consen 2 PIRDEFLLKLFFGGHLDPEEAIELLEERREQHEERLAEYEEIEQE 46 (90)
T ss_dssp ----HHHHHHHGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899998873 266778888888888888888888776644
No 18
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=29.60 E-value=1.9e+02 Score=21.51 Aligned_cols=57 Identities=14% Similarity=0.101 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhcccCCchHHHHHHHHHhhcCCCHHHHHHHhccCH
Q 028689 106 RGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLNEDE 171 (205)
Q Consensus 106 RaL~Fi~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~P~R~~fl~~l~~~e 171 (205)
..-+++..+|..+++..+..+-.++.-.-.+ .|+..++|=++==+|+.+++.+.++.
T Consensus 18 ~~ee~ia~yL~~~le~~d~a~i~~alg~var---------~~GMsqvA~~aGlsRe~LYkaLS~~G 74 (100)
T COG3636 18 TDEEAIAAYLNAALEEGDPALIAAALGVVAR---------SRGMSQVARKAGLSREGLYKALSPGG 74 (100)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hcCHHHHHHHhCccHHHHHHHhCCCC
Confidence 3567888888888876553322222222211 36677888888889999999997643
No 19
>PRK14147 heat shock protein GrpE; Provisional
Probab=29.56 E-value=1.6e+02 Score=23.92 Aligned_cols=50 Identities=14% Similarity=-0.087 Sum_probs=39.3
Q ss_pred HHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 149 AVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 149 ~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.-+++-..+|-.++|=+.+....+ ....+...++-+++.+.+.|+++|++
T Consensus 67 ~~~~~~~lLpv~DnlerAl~~~~~----~~~~l~~Gv~mi~k~l~~~L~~~Gv~ 116 (172)
T PRK14147 67 NEKLLGELLPVFDSLDAGLTAAGT----EPSPLRDGLELTYKQLLKVAADNGLT 116 (172)
T ss_pred HHHHHHHHhhhhhHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 356777888999999888854222 23567899999999999999999984
No 20
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=28.95 E-value=1.2e+02 Score=23.86 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 170 DETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 170 ~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.+.+....|.+..+..++.++.+++++.+.|+.
T Consensus 44 ~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip 76 (166)
T PF11553_consen 44 EDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIP 76 (166)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455688899999999999999999999999985
No 21
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=28.69 E-value=1.1e+02 Score=23.45 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=38.1
Q ss_pred HHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 149 AVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 149 ~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.-.++...+|--+.|-+.+...... ..+..+...++.+++.+..++.++|+.
T Consensus 34 ~~~~~~~ll~v~D~le~a~~~~~~~--~~~~~~~~g~~~i~~~l~~~L~~~Gv~ 85 (137)
T cd00446 34 IEKFAKDLLPVLDNLERALEAAKKE--EELKNLVEGVEMTLKQLLDVLEKHGVE 85 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 3445566677777777776532221 356788999999999999999999984
No 22
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.04 E-value=1.9e+02 Score=23.88 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=38.6
Q ss_pred HHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 150 VAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 150 ~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
-+++...+|-.++|-+.+..... .+..+...++-+++.+.++|.+||++
T Consensus 82 ~~~~~~LLpv~DnLerAl~~~~~----~~~~l~~Gv~mi~k~l~~vL~k~Gv~ 130 (185)
T PRK14139 82 ESFAESLLPVKDSLEAALADESG----DLEKLREGVELTLKQLTSAFEKGRVV 130 (185)
T ss_pred HHHHHHHhhHHhHHHHHHhcccc----hHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 45566788999999888754322 35678999999999999999999984
No 23
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=27.86 E-value=25 Score=23.66 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHhhcccCCch-HHHHHHHH
Q 028689 112 RVLFEQILAAEGNSLKDPASKAYTQVFAPHHGW-AIRKAVAA 152 (205)
Q Consensus 112 ~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w-~vR~~~~~ 152 (205)
+.-++.++.. +..+...|++||..-++-|+.- -.|.+|.+
T Consensus 3 q~~l~~~~~~-d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~ 43 (65)
T PF13959_consen 3 QQKLEKLVAK-DRELKELAQKAFVSYVRAYASHKELKDIFNV 43 (65)
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhhhhhhCCc
Confidence 3445666654 6678999999999988888876 66666554
No 24
>PRK14151 heat shock protein GrpE; Provisional
Probab=27.65 E-value=1.6e+02 Score=23.98 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=40.2
Q ss_pred HHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 149 AVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 149 ~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.-+++...+|--++|=+.+.....+ ...+..++..++-+++.+.+.|+++|++
T Consensus 69 ~~~~~~~LLpv~DnlerAl~~~~~~-~~~~~~~~~Gv~mi~k~l~~~L~k~Gv~ 121 (176)
T PRK14151 69 LEKFAGDLLPVVDSLERGLELSSAD-DEAIKPMREGVELTLKMFQDTLKRYQLE 121 (176)
T ss_pred HHHHHHHHhhHHhHHHHHHhccccc-chhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 4466778889999998887531110 1246788999999999999999999984
No 25
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=27.38 E-value=78 Score=18.34 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHhHHhhHHhhhchh
Q 028689 28 AADVELAAFSRACSYVSPLFGCLGIA 53 (205)
Q Consensus 28 ~~~i~~~~fl~a~~~l~~~~d~lG~~ 53 (205)
.+.|...+|++++..+..|++.=|.+
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 36788999999999999999887764
No 26
>PRK14153 heat shock protein GrpE; Provisional
Probab=26.44 E-value=1.7e+02 Score=24.36 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
..-+++..++|--++|-+.+..... ...+..++..++-+++.+...|.++|+.
T Consensus 81 a~~~~~~~LLpv~DnLerAl~~~~~--~~~~~~l~~Gvemi~k~~~~vL~k~Gv~ 133 (194)
T PRK14153 81 VLEQVLLDLLEVTDNFERALESART--AEDMNSIVEGIEMVSKQFFSILEKYGLE 133 (194)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 3456778889999999888853211 1236778899999999999999999985
No 27
>PRK14162 heat shock protein GrpE; Provisional
Probab=25.82 E-value=1.8e+02 Score=24.20 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.+.+++...+|-.++|=+.+....+ ...+..++..++-+++.+.+.|.++|+.
T Consensus 87 a~~~~~~~LLpV~DnLerAl~~~~~--~~~~~~l~~Gvemi~k~l~~vL~~~GV~ 139 (194)
T PRK14162 87 ESQSLAKDVLPAMDNLERALAVKAD--DEAAKQLKKGVQMTLDHLVKALKDHGVT 139 (194)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc--chhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 3456778889999999888853211 1235778999999999999999999984
No 28
>PHA02360 hypothetical protein
Probab=25.40 E-value=71 Score=21.91 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 028689 186 APVILYIDKLFLSRELGI 203 (205)
Q Consensus 186 ~~v~~~i~~l~~~~~l~~ 203 (205)
-++|++|-.+|++.|++|
T Consensus 29 PklY~~i~k~YEe~gidF 46 (70)
T PHA02360 29 PKLYKKIRKYYEEEGIDF 46 (70)
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 367899999999999976
No 29
>KOG2427 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.25 E-value=50 Score=30.43 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=33.9
Q ss_pred cccCCchHHHHHHHHHhhcC--CCHH-------HHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028689 138 FAPHHGWAIRKAVAAGMYAL--PTRA-------QLLRKLNED-ETSARIQMQDYITTSAPVILYIDKLFLSREL 201 (205)
Q Consensus 138 L~~yH~w~vR~~~~~Al~a~--P~R~-------~fl~~l~~~-e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l 201 (205)
+.=||||+|-.=.--+..++ +++. +..++.+.. ..+-...+..-+...+..++..-...+.||+
T Consensus 133 V~LyHGWlvDpq~~e~~~ai~~~Syn~~~~~~tq~ve~~~~~~~~E~s~~i~s~~~~~~~f~~~s~tqlt~~Gl 206 (391)
T KOG2427|consen 133 VPLYHGWLVDPQDVEIVDAIGNRSYNELETLLTQLVEKQCGCASTENSEDVLSDCLMLESFLDESATQLTEHGL 206 (391)
T ss_pred CcceeeeecCCccHHHHHHhcccchhhhhhhHHHHHHHhcccccchhhhhhhhHHHHHHHhhccchHHHHHhhh
Confidence 45699999976554444443 5566 555555431 1111122444444555555555555555554
No 30
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=22.99 E-value=1.2e+02 Score=25.72 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHhcCccccCCccchhHHHHhhHHHHHHHHHHHH
Q 028689 75 ILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQI 118 (205)
Q Consensus 75 ~~tL~~mv~~E~~~~~~~~~~S~t~~LLwL~RaL~Fi~~~l~~l 118 (205)
..|.++|...|...+ ..+.|+-|++-|+..|+--.
T Consensus 165 ~~s~~e~f~~~~~~n---------~~~tW~lR~~G~llmf~G~~ 199 (248)
T PF07787_consen 165 KVSAEEMFAKEHSAN---------NTLTWILRFIGWLLMFIGFF 199 (248)
T ss_pred CcCHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHH
Confidence 358899999886543 68899999999999888644
No 31
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=22.97 E-value=97 Score=24.86 Aligned_cols=29 Identities=10% Similarity=0.316 Sum_probs=15.7
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028689 158 PTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFL 197 (205)
Q Consensus 158 P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~ 197 (205)
++|..|++.| ++...+++++++.+++++.
T Consensus 113 ~dR~~FL~tI-----------K~IAsaIK~lLdAvn~v~~ 141 (154)
T PF06840_consen 113 SDRRTFLETI-----------KEIASAIKKLLDAVNEVFK 141 (154)
T ss_dssp TSHHHHHHHH-----------HHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 4677777665 3334445555555555554
No 32
>PRK14141 heat shock protein GrpE; Provisional
Probab=22.63 E-value=2.2e+02 Score=23.90 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDET----SARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~----~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
...+++..++|-.++|=+.+..... .....+..++..++-+++.+.+.|+++|+.
T Consensus 79 a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek~GV~ 137 (209)
T PRK14141 79 GIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALERHGVK 137 (209)
T ss_pred HHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 4566778888999999888753111 112357889999999999999999999984
No 33
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.33 E-value=3.6e+02 Score=20.82 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=40.3
Q ss_pred HHHHHHhHHhhHHhhhchhhHHHHHHHHHhHHHHHHcchhcchHHHHHHHHH
Q 028689 35 AFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDI 86 (205)
Q Consensus 35 ~fl~a~~~l~~~~d~lG~~f~~v~~D~~~ki~~l~~~~~~~~tL~~mv~~E~ 86 (205)
.+-+||..+.+=++.+....+-+|+-+.++|+.+...-+...-+...+..|+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999988654444444566666665
No 34
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.22 E-value=2.2e+02 Score=23.23 Aligned_cols=53 Identities=8% Similarity=-0.118 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
...+++...+|--++|=+.+....+. .....+...++-+++.+.+.|+++|++
T Consensus 71 a~~~~~~~LLpV~DnlerAl~~~~~~--~~~~~l~~Gv~mi~k~l~~vL~k~Gv~ 123 (176)
T PRK14159 71 ANESFAKDLLDVLDALEAAVNVECHD--EISLKIKEGVQNTLDLFLKKLEKHGVA 123 (176)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHHCcCE
Confidence 45677888999999998888532111 123568999999999999999999984
No 35
>PRK14149 heat shock protein GrpE; Provisional
Probab=22.15 E-value=2e+02 Score=23.83 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
..-+++...+|-.++|=+.+.....+ .....+...++-+++.+.++|.++|+.
T Consensus 84 a~~~~~~~LLpVlDnLerAl~~~~~~--~~~~~l~~Gv~mi~k~l~~vL~k~GV~ 136 (191)
T PRK14149 84 AYEKIALDLLPVIDALLGALKSAAEV--DKESALTKGLELTMEKLHEVLARHGIE 136 (191)
T ss_pred HHHHHHHHHhhHHhHHHHHHhccccc--cchHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 45567788899999998888532111 124568899999999999999999985
No 36
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=22.06 E-value=3.1e+02 Score=26.57 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=43.5
Q ss_pred hHHhhhchhhHHHHHHHHHhHHHHHHcchhc-chHHHHHHHHHhcCccccCCccchhHHHHhhHHHHHHHHHHHHHhcCC
Q 028689 45 PLFGCLGIAFKFAEMDYVAKVDDLAEASKSI-LTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEG 123 (205)
Q Consensus 45 ~~~d~lG~~f~~v~~D~~~ki~~l~~~~~~~-~tL~~mv~~E~~~~~~~~~~S~t~~LLwL~RaL~Fi~~~l~~l~~~~~ 123 (205)
.+|.+.|+-+.|+ .|+..|++.|++-.+.. .+.+.+-..-...|....-..-+-..+|+.-|| +...|..++.-
T Consensus 70 aLf~kvgKs~ppA-~~v~~kvqeleql~es~k~~~e~l~~~~~~~~k~palsp~alkhiWiRtAL--~eKvLdkiv~y-- 144 (813)
T KOG1648|consen 70 ALFQKVGKSNPPA-QQVLDKVQELEQLRESRKPSQEALRRQGSASGKAPALSPQALKHIWIRTAL--YEKVLDKIVNY-- 144 (813)
T ss_pred HHHHHHhccCCcH-HHHHHHHHHHHHHHhcccchHHHHHhhhccccCCCCCCHHHHhHHHHHHHH--HHHHHHHHHHH--
Confidence 3455556555554 57777777776522211 233333222222222221112355779998776 22334444321
Q ss_pred CCcchHHHHHHHhh---cccCCchHH
Q 028689 124 NSLKDPASKAYTQV---FAPHHGWAI 146 (205)
Q Consensus 124 ~~l~~~~~~AY~~t---L~~yH~w~v 146 (205)
+...+++-|++. +-|--|=++
T Consensus 145 --lien~SkYYekeALL~DPV~Gpil 168 (813)
T KOG1648|consen 145 --LIENKSKYYEKEALLLDPVKGPIL 168 (813)
T ss_pred --HHhhhhhhhhhhhhhcCcccchHH
Confidence 222334556554 344444443
No 37
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.34 E-value=2.3e+02 Score=23.93 Aligned_cols=54 Identities=6% Similarity=-0.036 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 147 RKAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 147 R~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
..+.+++-.++|--++|=+.+..... ......++..++-++..+.+.|.++|++
T Consensus 101 ~a~e~~~~~lLpv~DnlerAl~~~~~--~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~ 154 (215)
T PRK14146 101 EAVKSLVSGFLNPIDNLERVGATQNQ--SEELKPFVEGVKMILKEFYSVLEKSNVI 154 (215)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhcccc--cchhhHHHHHHHHHHHHHHHHHHHCcCe
Confidence 34567788889999999888753211 1235778999999999999999999985
No 38
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.15 E-value=2.4e+02 Score=23.40 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 148 KAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 148 ~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
..-+++..++|--++|=+.+....+ ..+..++..++-+++.+...|+++|+.
T Consensus 88 a~~~~~~~lLpV~DnLerAl~~~~~---~~~~~i~~Gv~mi~k~l~~vLek~Gv~ 139 (194)
T PRK14158 88 GNESLILEILPAVDNMERALDHADE---ESMSAIIEGIRMTLSMLLSTLKKFGVT 139 (194)
T ss_pred HHHHHHHHHHhHHhHHHHHHhccCc---chHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 4556777888989999888753221 135778999999999999999999984
No 39
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=20.87 E-value=27 Score=26.53 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=8.4
Q ss_pred cccCCchHHH
Q 028689 138 FAPHHGWAIR 147 (205)
Q Consensus 138 L~~yH~w~vR 147 (205)
+.=+|||++-
T Consensus 87 I~LvHGWl~d 96 (121)
T PF04424_consen 87 IPLVHGWLVD 96 (121)
T ss_pred CCceeeeccC
Confidence 6779999975
No 40
>PRK14160 heat shock protein GrpE; Provisional
Probab=20.77 E-value=2.5e+02 Score=23.67 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 147 RKAVAAGMYALPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 147 R~~~~~Al~a~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
.....++-.++|--+.|=+.+.... ....+...++-++..+...|.++|+.
T Consensus 108 ~a~e~~~~~LLpVlDnLerAl~~~~-----~~~~l~~Gv~mi~kql~~vL~k~GVe 158 (211)
T PRK14160 108 DACEDVLKELLPVLDNLERAAAVEG-----SVEDLKKGIEMTVKQFKTSLEKLGVE 158 (211)
T ss_pred HHHHHHHHHHhhHHhHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHCCCE
Confidence 3456677788899999988875432 23457889999999999999999984
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=20.25 E-value=1.3e+02 Score=16.51 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhccCCCCCChHHHHHHHh
Q 028689 12 KISESFKELAATVNSQAADVELAAFSRACS 41 (205)
Q Consensus 12 ~~~~~f~~~~~~~~~~~~~i~~~~fl~a~~ 41 (205)
++...|+.+. .+.++.|+..+|..+.+
T Consensus 1 ~l~~~F~~~D---~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFD---KDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH----TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHC---CCCCCcCcHHHHHHHHH
Confidence 3566777763 34678899999988766
Done!