Query 028689
Match_columns 205
No_of_seqs 110 out of 430
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 02:02:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3f_A Glycolipid transfer-lik 100.0 2.5E-57 8.6E-62 380.7 21.6 193 4-205 6-201 (224)
2 3kv0_A HET-C2; GLTP, glycolipi 100.0 1.5E-57 5.1E-62 378.5 15.7 194 3-202 10-208 (209)
3 3rzn_A GLTP, glycolipid transf 100.0 4E-56 1.4E-60 370.2 20.8 179 27-205 14-207 (209)
4 2jtt_C Calcyclin-binding prote 45.8 24 0.00082 20.4 3.2 27 111-137 8-34 (35)
5 3vmx_A Voltage-gated hydrogen 39.9 55 0.0019 20.2 4.4 27 175-201 20-46 (48)
6 2bbh_A Divalent cation transpo 35.6 1.5E+02 0.0051 23.6 7.9 80 45-137 175-261 (269)
7 2hn1_A CORA, magnesium and cob 32.6 1.7E+02 0.0059 23.2 7.9 78 46-137 177-261 (266)
8 3a2a_A Voltage-gated hydrogen 32.0 89 0.003 19.8 4.5 27 175-201 27-53 (58)
9 2d7c_C RAB11 family-interactin 23.8 73 0.0025 19.0 2.9 26 159-185 2-27 (42)
10 2itb_A TRNA-(MS(2)IO(6)A)-hydr 22.4 1.4E+02 0.0048 24.0 5.2 27 142-168 35-64 (206)
11 3iqt_A Signal transduction his 22.2 2.2E+02 0.0075 20.3 6.4 44 158-201 15-58 (123)
12 3ajm_A Programmed cell death p 21.4 1.2E+02 0.004 24.6 4.5 32 157-192 114-145 (213)
13 2rbd_A BH2358 protein; putativ 20.0 1.5E+02 0.0053 22.1 5.0 34 170-203 44-77 (171)
No 1
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=100.00 E-value=2.5e-57 Score=380.69 Aligned_cols=193 Identities=22% Similarity=0.380 Sum_probs=176.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhccCCCCCChHHHHHHHhHHhhHHhhhchhhHHHHHHHHHhHHHHHH-cch-hcchHHHH
Q 028689 4 TDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE-ASK-SILTLQSV 81 (205)
Q Consensus 4 ~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~D~~~ki~~l~~-~~~-~~~tL~~m 81 (205)
-+..|+|++|..+|+++. ..++++|+|.+||+||++|++|||.||++|+||++||.+||++|.. +|. +|.||++|
T Consensus 6 ~~~~f~l~~v~~~F~~~~---~~~~~~I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL~~~~p~~~~~TL~~m 82 (224)
T 2i3f_A 6 NEEKEDFGIIVILWKQVT---VKEDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYRANQTVHAETLQEL 82 (224)
T ss_dssp -----CTTHHHHHHHTSC---CCTTCCCBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTTCCSBHHHH
T ss_pred cccCCCHHHHHHHHHHhh---ccCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCccchhhhHHHH
Confidence 357899999999999973 2236899999999999999999999999999999999999999944 577 99999999
Q ss_pred HHHHHhcCccccCCccchhHHHHhhHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhcccCCchHHHHHHHHHhhcCCCHH
Q 028689 82 IDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRA 161 (205)
Q Consensus 82 v~~E~~~~~~~~~~S~t~~LLwL~RaL~Fi~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~P~R~ 161 (205)
|++|+ + +++||||+||||||||+|++.||+++..+++ +++++|++||++||+|||||+||++|++||+++|+|+
T Consensus 83 v~~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~-~l~~~~~~AY~~tL~~yHgwivr~af~~Am~a~P~R~ 156 (224)
T 2i3f_A 83 IIAEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK-SLEQCVTEAYNCTLRPCHSAVIQKVFWGGVKLAPSRE 156 (224)
T ss_dssp HHHHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHTTTGGGSCHHHHHHHHHHHTTCCCHH
T ss_pred HHHHH-h----cCCchhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhCCCHH
Confidence 99998 4 4679999999999999999999999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCC
Q 028689 162 QLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG-IDW 205 (205)
Q Consensus 162 ~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~-~~~ 205 (205)
+|+++++++++++.++|++++.++++++++|+++|++|||+ .+|
T Consensus 157 ~fl~~L~~~~~~~~~~l~~~l~~l~~v~~~i~~ly~~~~L~d~~~ 201 (224)
T 2i3f_A 157 RFYRKLHPDLNIAKAKIEEFLIELHDPLCCIVQFFFQRELEDQCW 201 (224)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccc
Confidence 99999999999999999999999999999999999999996 444
No 2
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=100.00 E-value=1.5e-57 Score=378.50 Aligned_cols=194 Identities=20% Similarity=0.368 Sum_probs=176.3
Q ss_pred CCCCCcchHHHHHHHHHHHHhhccCCCCCChHHHHHHHhHHhhHHhhhch-hhHHHHHHHHHhHHHHHH----cchhcch
Q 028689 3 GTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLAE----ASKSILT 77 (205)
Q Consensus 3 ~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~-~f~~v~~D~~~ki~~l~~----~~~~~~t 77 (205)
-|+++.+++.|..+|.+|... ..++++|+|.+||++|++|++|||+||+ +|+||++||.+||++|++ +|++|.|
T Consensus 10 ~p~~~tff~~~~~~F~~~~~~-~~~~~~I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~t 88 (209)
T 3kv0_A 10 IPAGATFLETFXXSFVDVPID-AEXGNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQN 88 (209)
T ss_dssp -----CGGGGCSSCGGGCCEE-GGGTSEEBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSB
T ss_pred cCCCCccHHHHHhhHHhCCCc-cccCCCccHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhHHHHHHHhhcCchhhch
Confidence 378889999999999997310 1127899999999999999999999998 999999999999999975 5889999
Q ss_pred HHHHHHHHHhcCccccCCccchhHHHHhhHHHHHHHHHHHHHhcCCCCcchHHHHHHHhhcccCCchHHHHHHHHHhhcC
Q 028689 78 LQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEGNSLKDPASKAYTQVFAPHHGWAIRKAVAAGMYAL 157 (205)
Q Consensus 78 L~~mv~~E~~~~~~~~~~S~t~~LLwL~RaL~Fi~~~l~~l~~~~~~~l~~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~ 157 (205)
|++||++|++.+ ++||||+||||||||+|++.||+++. +++++++++|++||++||+|||||+||++|++||+++
T Consensus 89 L~~mv~~E~~~~----~~S~tr~LLwL~RaL~fi~~~l~~l~-~~~~~l~~~~~~AY~~tL~~yHgw~vr~af~~A~~a~ 163 (209)
T 3kv0_A 89 IQDLVRNELXTX----SHTATEGLLWLVRGLEFTCIALSXNI-GSTEELADSFRGSYRVTLXPHHSFLVXPIFSAAMSAC 163 (209)
T ss_dssp HHHHHHHHTCC-----CCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHTTGGGSCTTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 999999999874 67999999999999999999999999 7788999999999999999999999999999999999
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 028689 158 PTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSRELG 202 (205)
Q Consensus 158 P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~ 202 (205)
|+|++|+++++++++++.++|+++++++++++++||++|+++|..
T Consensus 164 P~R~~fl~~l~~~~~~~~~~L~~~l~al~~v~~~i~~~~~~~~~~ 208 (209)
T 3kv0_A 164 PYRXDFYAXLGDDEQXVQEELREYLVALDXIVNILXRFLESXEAX 208 (209)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGC
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999864
No 3
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=100.00 E-value=4e-56 Score=370.23 Aligned_cols=179 Identities=23% Similarity=0.440 Sum_probs=166.8
Q ss_pred CCCCCChHHHHHHHhHHhhHHhhhch-hhHHHHHHHHHhHHHHHH----cchhcchHHHHHHHHHhcCccc-cCCccchh
Q 028689 27 QAADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLAE----ASKSILTLQSVIDRDIEGNCVR-KAGSHTRN 100 (205)
Q Consensus 27 ~~~~i~~~~fl~a~~~l~~~~d~lG~-~f~~v~~D~~~ki~~l~~----~~~~~~tL~~mv~~E~~~~~~~-~~~S~t~~ 100 (205)
++++|+|.+||+||++|++|||+||+ +|+||++||.+||++|++ +|++|.||++||++|++.|+.. .+.|||++
T Consensus 14 ~~~~i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~~~~~~s~tr~ 93 (209)
T 3rzn_A 14 ADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLA 93 (209)
T ss_dssp TTCCCBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHcCCcccCCchHHHH
Confidence 57899999999999999999999999 999999999999999975 5899999999999999998763 46789999
Q ss_pred HHHHhhHHHHHHHHHHHHHhcCCC-----CcchHHHHHHHhhcccCCchHHHHHHHHHhhcCCCHHHHHHHhc--cC--H
Q 028689 101 LLRVKRGLDMVRVLFEQILAAEGN-----SLKDPASKAYTQVFAPHHGWAIRKAVAAGMYALPTRAQLLRKLN--ED--E 171 (205)
Q Consensus 101 LLwL~RaL~Fi~~~l~~l~~~~~~-----~l~~~~~~AY~~tL~~yH~w~vR~~~~~Al~a~P~R~~fl~~l~--~~--e 171 (205)
||||||||+|++.||+++.+++++ +++.+|++||++||+|||||+||++|++||+++|+|++|+++++ .+ +
T Consensus 94 LLwL~R~L~fi~~~l~~l~~~~~~~~~~~~l~~~~~~AY~~tL~~~H~w~vr~a~~~A~~a~P~R~~fl~~l~~g~~~~e 173 (209)
T 3rzn_A 94 LMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTE 173 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTTSTTCCHHHHHHHHHHHTGGGSCHHHHHHHHHHGGGCCCHHHHHHHHTTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhCCCHHHHHHHHhcCCCCcH
Confidence 999999999999999999986542 38999999999999999999999999999999999999999994 43 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 028689 172 TSARIQMQDYITTSAPVILYIDKLFLSRELGIDW 205 (205)
Q Consensus 172 ~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~~~~ 205 (205)
+++.++|++|+.++++++++|+++|++|||+.|+
T Consensus 174 e~~~~~l~~~l~~l~~iv~~i~~~~~~~~L~~~~ 207 (209)
T 3rzn_A 174 EECLEKIRLFLVNYTATIDVIYEMYTQMNAELNY 207 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 8899999999999999999999999999999985
No 4
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=45.81 E-value=24 Score=20.37 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHhh
Q 028689 111 VRVLFEQILAAEGNSLKDPASKAYTQV 137 (205)
Q Consensus 111 i~~~l~~l~~~~~~~l~~~~~~AY~~t 137 (205)
+-.||+.|+.+.+++.+.+..+||.++
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 356899999988899999999998764
No 5
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=39.88 E-value=55 Score=20.19 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028689 175 RIQMQDYITTSAPVILYIDKLFLSREL 201 (205)
Q Consensus 175 ~~~l~~~~~~~~~v~~~i~~l~~~~~l 201 (205)
..++..-++..+.=+.+++.++.+||+
T Consensus 20 v~~Le~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 20 IQHLEFSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence 456788889999999999999999997
No 6
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=35.58 E-value=1.5e+02 Score=23.61 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=40.8
Q ss_pred hHHhhhchhhHHHHHHHHHhHHHHHHc---chhcchHHHHHHHHHhcCccccCCccchhHHHHhhHHHHHHHHHHHHHhc
Q 028689 45 PLFGCLGIAFKFAEMDYVAKVDDLAEA---SKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAA 121 (205)
Q Consensus 45 ~~~d~lG~~f~~v~~D~~~ki~~l~~~---~~~~~tL~~mv~~E~~~~~~~~~~S~t~~LLwL~RaL~Fi~~~l~~l~~~ 121 (205)
.++|.+=.-+.++-.++...++.|++. +..-..++.+.... +.++.|+|++.=....+..+..+
T Consensus 175 ~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lr-------------r~l~~lrr~l~p~~~vl~~L~~~ 241 (269)
T 2bbh_A 175 SLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLK-------------RNLVELRKTIWPLREVLSSLYRD 241 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555555666667788888888763 11224455554443 67888888888888888887653
Q ss_pred C----CCCcchHHHHHHHhh
Q 028689 122 E----GNSLKDPASKAYTQV 137 (205)
Q Consensus 122 ~----~~~l~~~~~~AY~~t 137 (205)
. ++....-.++.|+..
T Consensus 242 ~~~~~~~~~~~~lrDv~dh~ 261 (269)
T 2bbh_A 242 VPPLIEKETVPYFRDVYDHT 261 (269)
T ss_dssp HHHHTC--------------
T ss_pred CCccCCHHHHHHHHHHHHHH
Confidence 1 233444555555543
No 7
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=32.58 E-value=1.7e+02 Score=23.23 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHhhhchhhHHHHHHHHHhHHHHHHc---chhcchHHHHHHHHHhcCccccCCccchhHHHHhhHHHHHHHHHHHHHhcC
Q 028689 46 LFGCLGIAFKFAEMDYVAKVDDLAEA---SKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122 (205)
Q Consensus 46 ~~d~lG~~f~~v~~D~~~ki~~l~~~---~~~~~tL~~mv~~E~~~~~~~~~~S~t~~LLwL~RaL~Fi~~~l~~l~~~~ 122 (205)
++|.+=.-+.++-..+...++.|++. +.. ..++.+...+ +.++.|+|++.=....+..+....
T Consensus 177 lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~l~~l~~lr-------------r~l~~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 177 ILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TLIGKIHSLK-------------REILAFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHH-------------HHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55554444555556667777776642 111 3333333332 677888888888888888887653
Q ss_pred ----CCCcchHHHHHHHhh
Q 028689 123 ----GNSLKDPASKAYTQV 137 (205)
Q Consensus 123 ----~~~l~~~~~~AY~~t 137 (205)
++....-.++.|+..
T Consensus 243 ~~~~~~~~~~~lrDv~dh~ 261 (266)
T 2hn1_A 243 HELIGEEVKVYYRDVYDHA 261 (266)
T ss_dssp CTTSCTTTHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHH
Confidence 345556677777764
No 8
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.05 E-value=89 Score=19.84 Aligned_cols=27 Identities=15% Similarity=0.109 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028689 175 RIQMQDYITTSAPVILYIDKLFLSREL 201 (205)
Q Consensus 175 ~~~l~~~~~~~~~v~~~i~~l~~~~~l 201 (205)
..+|..-+...+.=+.|+++++..||+
T Consensus 27 v~~Le~~c~e~eQEieRL~~LLkqHgl 53 (58)
T 3a2a_A 27 IQHLEFSCSEKEQEIERLNKLLRQHGL 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467888889999999999999999998
No 9
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=23.80 E-value=73 Score=19.05 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=18.5
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHHH
Q 028689 159 TRAQLLRKLNEDETSARIQMQDYITTS 185 (205)
Q Consensus 159 ~R~~fl~~l~~~e~~~~~~l~~~~~~~ 185 (205)
||+++++.+...++ ....|+.|++.+
T Consensus 2 S~~eL~~~l~~qee-~n~~Le~YID~L 27 (42)
T 2d7c_C 2 SRDELMEAIQKQEE-INFRLQDYIDRI 27 (42)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 68888888865544 446788887765
No 10
>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7
Probab=22.41 E-value=1.4e+02 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHhhcC---CCHHHHHHHhc
Q 028689 142 HGWAIRKAVAAGMYAL---PTRAQLLRKLN 168 (205)
Q Consensus 142 H~w~vR~~~~~Al~a~---P~R~~fl~~l~ 168 (205)
|-|-=|||+..||..+ |++.+++.++.
T Consensus 35 HA~CE~KAA~tAm~Li~rYp~~~~Lv~~m~ 64 (206)
T 2itb_A 35 HKNCEFKAASTALSLIAKYNTHLDLINMMS 64 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 6677789999999887 99999998884
No 11
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.17 E-value=2.2e+02 Score=20.32 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=36.8
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 028689 158 PTRAQLLRKLNEDETSARIQMQDYITTSAPVILYIDKLFLSREL 201 (205)
Q Consensus 158 P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l 201 (205)
-+.+..++..+++++-+.+.+..|+..+...+..|+..+...+.
T Consensus 15 ~D~~~~l~~a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~d~ 58 (123)
T 3iqt_A 15 LDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENP 58 (123)
T ss_dssp CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 35566777778888888899999999999999999999987764
No 12
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=21.44 E-value=1.2e+02 Score=24.56 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=18.1
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Q 028689 157 LPTRAQLLRKLNEDETSARIQMQDYITTSAPVILYI 192 (205)
Q Consensus 157 ~P~R~~fl~~l~~~e~~~~~~l~~~~~~~~~v~~~i 192 (205)
+++|+.|++.|. ++...++++++++..|...+
T Consensus 114 I~dR~~FL~tIK----eIAsaIKklLDAvn~v~~~~ 145 (213)
T 3ajm_A 114 INDRVRFLQTIK----DIASAIKELLDTVNNVFKKY 145 (213)
T ss_dssp TTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHS
T ss_pred hcchHHHHHHHH----HHHHHHHHHHHHHHHHHhhc
Confidence 467888887773 23334555555555554443
No 13
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=20.04 E-value=1.5e+02 Score=22.13 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 028689 170 DETSARIQMQDYITTSAPVILYIDKLFLSRELGI 203 (205)
Q Consensus 170 ~e~~~~~~l~~~~~~~~~v~~~i~~l~~~~~l~~ 203 (205)
.+.+....|++.+..+..-++.+.++|.+.|+..
T Consensus 44 ~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g~p~ 77 (171)
T 2rbd_A 44 GDEDLKNLIDEAIQAMQDENHQLEELLRSNGVGL 77 (171)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4446788899999999999999999999999864
Done!