Query 028691
Match_columns 205
No_of_seqs 115 out of 177
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 15:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01813 ATP-synt_D: ATP synth 98.2 1.1E-05 2.5E-10 67.2 8.8 137 12-200 14-154 (196)
2 PRK00373 V-type ATP synthase s 98.1 2.5E-05 5.5E-10 65.6 10.6 140 12-201 24-164 (204)
3 TIGR00309 V_ATPase_subD H(+)-t 97.8 0.00023 4.9E-09 60.1 10.9 141 12-200 22-163 (209)
4 COG1394 NtpD Archaeal/vacuolar 97.4 0.0034 7.3E-08 53.4 11.5 137 11-201 22-162 (211)
5 PRK02195 V-type ATP synthase s 97.3 0.0056 1.2E-07 51.5 12.5 130 12-200 23-153 (201)
6 KOG1647 Vacuolar H+-ATPase V1 97.2 0.013 2.9E-07 50.0 13.4 132 17-199 32-165 (255)
7 PF10642 Tom5: Mitochondrial i 73.9 17 0.00037 23.9 5.7 27 156-183 1-32 (49)
8 PHA01750 hypothetical protein 71.5 11 0.00024 26.4 4.6 25 169-193 29-55 (75)
9 PF14038 YqzE: YqzE-like prote 66.3 1.3 2.8E-05 29.8 -0.8 16 150-166 34-51 (54)
10 PF08287 DASH_Spc19: Spc19; I 47.4 40 0.00087 27.1 4.7 27 154-180 40-66 (153)
11 KOG3478 Prefoldin subunit 6, K 43.9 66 0.0014 24.9 5.1 45 155-199 56-102 (120)
12 PRK12419 riboflavin synthase s 38.7 50 0.0011 26.9 4.0 34 156-189 110-154 (158)
13 PRK00061 ribH 6,7-dimethyl-8-r 38.4 36 0.00079 27.4 3.2 34 156-189 112-153 (154)
14 PRK11677 hypothetical protein; 35.1 63 0.0014 25.6 3.9 51 7-57 30-80 (134)
15 PF04696 Pinin_SDK_memA: pinin 31.3 80 0.0017 24.6 4.0 20 155-175 11-30 (131)
16 cd00890 Prefoldin Prefoldin is 31.0 1.3E+02 0.0028 22.4 5.0 44 154-197 72-118 (129)
17 PF06150 ChaB: ChaB; InterPro 30.2 1.7E+02 0.0037 19.5 5.3 39 161-199 1-45 (57)
18 PF00885 DMRL_synthase: 6,7-di 29.5 32 0.00069 27.4 1.4 37 152-189 100-144 (144)
19 PF05338 DUF717: Protein of un 28.8 83 0.0018 21.2 3.1 38 160-197 2-40 (55)
20 PF08928 DUF1910: Domain of un 27.9 55 0.0012 24.5 2.5 23 42-64 43-65 (117)
21 TIGR03504 FimV_Cterm FimV C-te 24.2 44 0.00096 21.2 1.1 14 51-64 2-15 (44)
22 PHA01745 hypothetical protein 22.5 94 0.002 27.8 3.2 16 154-169 128-143 (306)
23 cd00584 Prefoldin_alpha Prefol 21.6 2.3E+02 0.0049 21.4 4.9 40 158-197 78-118 (129)
24 COG0054 RibH Riboflavin syntha 21.4 90 0.002 25.3 2.6 35 152-187 109-151 (152)
25 cd07609 BAR_SIP3_fungi The Bin 21.1 2.5E+02 0.0054 23.8 5.4 34 164-197 144-178 (214)
26 COG5091 SGT1 Suppressor of G2 20.8 1.4E+02 0.0031 26.9 3.9 42 163-204 93-137 (368)
27 PHA03011 hypothetical protein; 20.4 1.6E+02 0.0036 22.4 3.7 30 15-44 59-88 (120)
28 PF10516 SHNi-TPR: SHNi-TPR; 20.0 1.3E+02 0.0029 18.3 2.7 20 170-189 15-34 (38)
No 1
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=98.16 E-value=1.1e-05 Score=67.17 Aligned_cols=137 Identities=24% Similarity=0.394 Sum_probs=88.3
Q ss_pred cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhh-hceeEeeccccC
Q 028691 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAA-ATSLKVSEQDVD 90 (205)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~-~~~v~v~~~~~~ 90 (205)
+++..-.+...|.+..+++.++++|..++..+...+.+.|+.|+.|++.+|...+.. ...... ...|.+....+
T Consensus 14 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~ni- 88 (196)
T PF01813_consen 14 KRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSS----VAESVPESVEVEVKERNI- 88 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHH----HHTS-S---EEEEEEEEE-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH----HHhcCCCCcEEEEEEEEE-
Confidence 344455666778999999999999999999999999999999999999988654332 110000 11233322100
Q ss_pred CCCC--CCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHH
Q 028691 91 SMES--QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRS 167 (205)
Q Consensus 91 ~~~~--~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~ 167 (205)
-| .|.|... ......|..-+|.+ .|+.+-.
T Consensus 89 --~GV~vP~~~~~---------------------------------------------~~~~~~~~~~y~~~~~~~~~d~ 121 (196)
T PF01813_consen 89 --MGVRVPVLEVK---------------------------------------------EVRRPFPSPPYGLLGTPPWLDE 121 (196)
T ss_dssp --TTEEEEEEEEE-----------------------------------------------GGTTS------TT--HHHHH
T ss_pred --EEEEeceEEee---------------------------------------------ecccccccccCCcccCCHHHHH
Confidence 01 0111110 00012233334444 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691 168 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL 200 (205)
Q Consensus 168 AQ~~F~~ale~~velanlq~~i~~~~~~i~~~~ 200 (205)
|...|..+++.++++|+++..+..+..+|+++.
T Consensus 122 a~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~ 154 (196)
T PF01813_consen 122 AREKFEELLELLIELAELETALRRLAEEIRKTQ 154 (196)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 2
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=98.14 E-value=2.5e-05 Score=65.65 Aligned_cols=140 Identities=23% Similarity=0.370 Sum_probs=94.5
Q ss_pred cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCC
Q 028691 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS 91 (205)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~ 91 (205)
.++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++.+|...+..-... .....+|.+....+-|
T Consensus 24 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~~~~~---~~~~~~v~~~~~ni~G 100 (204)
T PRK00373 24 ERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEEAAAS---PKESLEVDVSSKNIMG 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhC---CCCCceEEEEeEEEEE
Confidence 4445556677799999999999999999999999999999999999999987533310000 0001223332210000
Q ss_pred CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691 92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL 170 (205)
Q Consensus 92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~ 170 (205)
=..|.|..+ . . .....+| ||.+ +|+.+..|-.
T Consensus 101 -V~vP~~~~~------~----------------------~---------------~~~~~~~---y~~~~t~~~~d~a~~ 133 (204)
T PRK00373 101 -VVVPVIELS------V----------------------K---------------RTLPERG---YGFLGTSAELDEAAE 133 (204)
T ss_pred -EEeceEEee------c----------------------c---------------cCCccCC---cCcccCCHHHHHHHH
Confidence 001111110 0 0 0001122 5665 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028691 171 SFERALETLVEIANLHTTMLSMFEQVHKELE 201 (205)
Q Consensus 171 ~F~~ale~~velanlq~~i~~~~~~i~~~~~ 201 (205)
.|..+++.++++|+++..+..+..+|+++.-
T Consensus 134 ~~~~~l~~li~lA~~e~~~~~L~~ei~kT~R 164 (204)
T PRK00373 134 KFEELLEKILELAEVEKTIQLLADEIEKTKR 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997643
No 3
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=97.83 E-value=0.00023 Score=60.13 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=92.4
Q ss_pred cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCC
Q 028691 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS 91 (205)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~ 91 (205)
.++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++..|...+..-. ........+|.+....+=|
T Consensus 22 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~v~~~~~~v~~~~~ni~G 99 (209)
T TIGR00309 22 KRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAA--LSVVTARFEVDMKSKNIMG 99 (209)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH--hcCCcccceEEEEEEEEee
Confidence 44455566777999999999999999999999999999999999999999874221100 0000000112222100000
Q ss_pred CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691 92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL 170 (205)
Q Consensus 92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~ 170 (205)
=..|.|..+.. . .. ..+ .-+|.+ +|+.+-.|-.
T Consensus 100 -V~vP~~~~~~~---------------------------~---------------~~-~~~--~~y~l~~t~~~~d~a~~ 133 (209)
T TIGR00309 100 -VVVPVFDSYEI---------------------------R---------------RK-VHE--RGYGLLFTSYKVDEAAE 133 (209)
T ss_pred -EEcceeEeecc---------------------------c---------------cC-ccc--cCcCcccCCHHHHHHHH
Confidence 00111211100 0 00 011 125654 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691 171 SFERALETLVEIANLHTTMLSMFEQVHKEL 200 (205)
Q Consensus 171 ~F~~ale~~velanlq~~i~~~~~~i~~~~ 200 (205)
.|..+++.+|++|+++..+..+..+|+++.
T Consensus 134 ~~~~~l~~li~lA~~e~~~~~L~~eI~~T~ 163 (209)
T TIGR00309 134 IYEEAVELIVELAEIETTIRLLAEEIEITK 163 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998754
No 4
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=97.36 E-value=0.0034 Score=53.35 Aligned_cols=137 Identities=23% Similarity=0.259 Sum_probs=95.9
Q ss_pred ccccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhh---ceeEeecc
Q 028691 11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA---TSLKVSEQ 87 (205)
Q Consensus 11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~---~~v~v~~~ 87 (205)
++.+..-.+..=|.|+.++..++++|..++..+.+.+.+.|.+++-|-+.+|...+-. +.... ..|.+..
T Consensus 22 a~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~------~~~~~~~~~~v~~~~- 94 (211)
T COG1394 22 ARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEE------IALVQKEKLEVDVDV- 94 (211)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH------HHhCCCCCceeeece-
Confidence 3444455566679999999999999999999999999999999999999998754321 00000 0122211
Q ss_pred ccCCCCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhcc-CCCChhHH
Q 028691 88 DVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFG-VLVSPKLR 166 (205)
Q Consensus 88 ~~~~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG-~LvP~sLR 166 (205)
++.-.+.+-. +. -.....|..=|| +-+|+.|=
T Consensus 95 -----~nI~GV~vP~--------------------~~----------------------~~~~~~~~~~~~~~~t~~~ld 127 (211)
T COG1394 95 -----ENIMGVVVPT--------------------FE----------------------LVELTPPPYDLGILSTSAWLD 127 (211)
T ss_pred -----eeeeeeeeee--------------------ee----------------------eeccCCCcccccccCCcHHHH
Confidence 1100011000 00 001235556677 33999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028691 167 SAQLSFERALETLVEIANLHTTMLSMFEQVHKELE 201 (205)
Q Consensus 167 ~AQ~~F~~ale~~velanlq~~i~~~~~~i~~~~~ 201 (205)
.|=..|..+|+.+|++|.++..+.-+.++|+++--
T Consensus 128 ~a~~~~~elle~li~lae~e~~~~~L~~Ei~~T~R 162 (211)
T COG1394 128 EAIEKFEELLEKLIELAELETTLRLLLEEIRKTKR 162 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997543
No 5
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=97.33 E-value=0.0056 Score=51.55 Aligned_cols=130 Identities=8% Similarity=-0.002 Sum_probs=91.2
Q ss_pred cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCC
Q 028691 12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS 91 (205)
Q Consensus 12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~ 91 (205)
+++..-.+..-|.|+..++.+++++..++..+...+...|..|+-|+-.+|...... . ...|.+....+=|
T Consensus 23 ~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~~~~~--------~-~~~v~~~~~nimG 93 (201)
T PRK02195 23 ERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFDEDLI--------K-VKKVEKDYENIAG 93 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhcC--------C-cceEEEeeeeEee
Confidence 344445566678899999999999999999999999999999999988887641000 0 0122222100000
Q ss_pred CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691 92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL 170 (205)
Q Consensus 92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~ 170 (205)
=..|.|... ..+...||.+ +|+.+=.|=.
T Consensus 94 -V~vP~~~~~-------------------------------------------------~~~~~~Y~~~~t~~~lD~a~~ 123 (201)
T PRK02195 94 -VEVPILDSI-------------------------------------------------EFEIIEYSLLNTPIWVDTGIE 123 (201)
T ss_pred -eeeceeeee-------------------------------------------------ecCCCCcCCccCCHHHHHHHH
Confidence 000111110 0122347777 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691 171 SFERALETLVEIANLHTTMLSMFEQVHKEL 200 (205)
Q Consensus 171 ~F~~ale~~velanlq~~i~~~~~~i~~~~ 200 (205)
.|..+++.++++|+++..+..+..+|+++-
T Consensus 124 ~~~~ll~~~i~lAe~E~~l~~L~~ei~kT~ 153 (201)
T PRK02195 124 LLKELVQLKIEAEVLQERLLLLEEELRKTT 153 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999754
No 6
>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]
Probab=97.22 E-value=0.013 Score=49.97 Aligned_cols=132 Identities=18% Similarity=0.236 Sum_probs=84.5
Q ss_pred chhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhh--ceeEeeccccCCCCC
Q 028691 17 RQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA--TSLKVSEQDVDSMES 94 (205)
Q Consensus 17 ~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~--~~v~v~~~~~~~~~~ 94 (205)
-.+-.-|.+.++|=+++..|..-...+...++..+|.||.|+|.+|+- + +...... .+|.|.... ++
T Consensus 32 LLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn~--~-----~~v~q~v~~a~v~vRsk~----en 100 (255)
T KOG1647|consen 32 LLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGNF--K-----HQVQQNVKQATVKVRSKK----EN 100 (255)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--c-----HHHHhhhhhheeeeeeec----cc
Confidence 345567999999999999999999999999999999999999999852 2 1222111 123322211 11
Q ss_pred CCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCCCChhHHHHHHHHHH
Q 028691 95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFER 174 (205)
Q Consensus 95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~LvP~sLR~AQ~~F~~ 174 (205)
...+.+-......+ ....-||.-.|- --++++.|...|.+
T Consensus 101 v~GV~Lp~fe~~~d---------------------------------------g~~~~~LtgL~r-gGqqv~~~r~~Y~k 140 (255)
T KOG1647|consen 101 VSGVKLPTFELYQD---------------------------------------GIDAFPLTGLGR-GGQQVARLRENYTK 140 (255)
T ss_pred cceeeechhhhhcc---------------------------------------cCcccccccccc-chHHHHHHHHHHHH
Confidence 11111111100000 001234432211 34789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028691 175 ALETLVEIANLHTTMLSMFEQVHKE 199 (205)
Q Consensus 175 ale~~velanlq~~i~~~~~~i~~~ 199 (205)
||+.+|++|++|.....+-.-|..+
T Consensus 141 Ave~LVelasLqtsf~~Lde~ik~T 165 (255)
T KOG1647|consen 141 AVELLVELASLQTSFRTLDEAIKVT 165 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987666655543
No 7
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=73.94 E-value=17 Score=23.91 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=19.8
Q ss_pred hccCCCChh-----HHHHHHHHHHHHHHHHHHH
Q 028691 156 VFGVLVSPK-----LRSAQLSFERALETLVEIA 183 (205)
Q Consensus 156 wFG~LvP~s-----LR~AQ~~F~~ale~~vela 183 (205)
|||+ .|+. +|.+|..-...|...+-.|
T Consensus 1 MFgg-~~~qpS~eE~k~~e~~A~~Tvk~a~~~a 32 (49)
T PF10642_consen 1 MFGG-PPPQPSEEEIKAAEAQANFTVKNAAAAA 32 (49)
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999 4443 8888888888877776443
No 8
>PHA01750 hypothetical protein
Probab=71.49 E-value=11 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHH
Q 028691 169 QLSFERALETLV--EIANLHTTMLSMF 193 (205)
Q Consensus 169 Q~~F~~ale~~v--elanlq~~i~~~~ 193 (205)
...|+.||+.+| |+-|++.+|..+-
T Consensus 29 Kq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 29 KQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999 9999999987664
No 9
>PF14038 YqzE: YqzE-like protein
Probab=66.30 E-value=1.3 Score=29.77 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=11.5
Q ss_pred cccch--hhccCCCChhHH
Q 028691 150 RQKSL--SVFGVLVSPKLR 166 (205)
Q Consensus 150 ~~DPL--~wFG~LvP~sLR 166 (205)
.+.|. +|||+ +|.+++
T Consensus 34 ~k~p~~~rWFG~-iP~~~~ 51 (54)
T PF14038_consen 34 EKEPFSYRWFGM-IPYSLS 51 (54)
T ss_pred cCCcHHHHHHhH-HHHHHH
Confidence 45777 99998 466654
No 10
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=47.36 E-value=40 Score=27.15 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.4
Q ss_pred hhhccCCCChhHHHHHHHHHHHHHHHH
Q 028691 154 LSVFGVLVSPKLRSAQLSFERALETLV 180 (205)
Q Consensus 154 L~wFG~LvP~sLR~AQ~~F~~ale~~v 180 (205)
=+.|+.++=+.|+.||.+|..-|+-.|
T Consensus 40 ~R~FeLvpe~dl~~Aq~~l~~EI~P~I 66 (153)
T PF08287_consen 40 TRHFELVPEPDLQAAQQSLRDEIEPQI 66 (153)
T ss_pred cCcccccCHHHHHHHHHHHHHhccHHH
Confidence 378999999999999999998776655
No 11
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=43.89 E-value=66 Score=24.87 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.8
Q ss_pred hhccC-CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 028691 155 SVFGV-LVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHKE 199 (205)
Q Consensus 155 ~wFG~-LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~~~ 199 (205)
+.||. ||++.|-.|.++-..-|+.|- |+..+.+.|.....+..+.
T Consensus 56 KliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 56 KLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQ 102 (120)
T ss_pred HHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56764 799999999999999999998 9999888888777666543
No 12
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=38.72 E-value=50 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=22.0
Q ss_pred hccCCCChhHHHHHHH--H---------HHHHHHHHHHHHHHHHH
Q 028691 156 VFGVLVSPKLRSAQLS--F---------ERALETLVEIANLHTTM 189 (205)
Q Consensus 156 wFG~LvP~sLR~AQ~~--F---------~~ale~~velanlq~~i 189 (205)
-||+|+|..+-||... + ..|...+++++++.++|
T Consensus 110 ~fGVLT~~~~eqA~~rqa~~Ra~~~nKG~eaA~aalem~~l~~~l 154 (158)
T PRK12419 110 FSVVLTPHHFHESEEHHDFFRAHFVVKGAEAAHACADTLLSRERL 154 (158)
T ss_pred EEEecCCCcHHHHHHHHHHhhcCccccHHHHHHHHHHHHHHHHHh
Confidence 5999999999876552 1 13444555666665554
No 13
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=38.44 E-value=36 Score=27.43 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=23.2
Q ss_pred hccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028691 156 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 189 (205)
Q Consensus 156 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 189 (205)
-||+|+|....||..... .|...+++++++.++|
T Consensus 112 ~~GVLt~~~~eQa~~R~~~~~~nkG~eaa~aal~m~~l~~~l 153 (154)
T PRK00061 112 GFGVLTTDTIEQAIERAGTKAGNKGAEAALAALEMANLLKQL 153 (154)
T ss_pred EEEecCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHhc
Confidence 599999999999985442 3444555666665543
No 14
>PRK11677 hypothetical protein; Provisional
Probab=35.09 E-value=63 Score=25.57 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=43.4
Q ss_pred hhccccccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHh
Q 028691 7 EKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASA 57 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARA 57 (205)
+....+++++..+..++..=-++-+-+++=-.|.+.|....++-|.+||+.
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~ 80 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKS 80 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999988888888888888889999999999999999983
No 15
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=31.28 E-value=80 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.0
Q ss_pred hhccCCCChhHHHHHHHHHHH
Q 028691 155 SVFGVLVSPKLRSAQLSFERA 175 (205)
Q Consensus 155 ~wFG~LvP~sLR~AQ~~F~~a 175 (205)
+|||+|. -.|.+++..-...
T Consensus 11 RmFG~Ll-GTL~kf~~e~~k~ 30 (131)
T PF04696_consen 11 RMFGGLL-GTLQKFKKEEEKK 30 (131)
T ss_pred hHHHHHH-HHHHHHHHhHHhc
Confidence 6999997 5898888854433
No 16
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.01 E-value=1.3e+02 Score=22.42 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=35.1
Q ss_pred hhhcc--CCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028691 154 LSVFG--VLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVH 197 (205)
Q Consensus 154 L~wFG--~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~ 197 (205)
+.|.| ++|..++-.|...+.+-++.+- ++.++...+..+..++.
T Consensus 72 ~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~ 118 (129)
T cd00890 72 LVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQIT 118 (129)
T ss_pred EEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565 5799999999999999999888 77777777777666655
No 17
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=30.17 E-value=1.7e+02 Score=19.55 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=23.1
Q ss_pred CChhHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 028691 161 VSPKLR-----SAQLSFERALETLVEIA-NLHTTMLSMFEQVHKE 199 (205)
Q Consensus 161 vP~sLR-----~AQ~~F~~ale~~vela-nlq~~i~~~~~~i~~~ 199 (205)
.|+++| .||..|..+-..+.+.- +-.........-|+++
T Consensus 1 LP~~vr~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~ 45 (57)
T PF06150_consen 1 LPSSVREHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRK 45 (57)
T ss_dssp S-HHHHTT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHH
T ss_pred CchHHHhHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHH
Confidence 377787 89999999998888433 3233333333444443
No 18
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=29.51 E-value=32 Score=27.36 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=28.5
Q ss_pred cchhhccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028691 152 KSLSVFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 189 (205)
Q Consensus 152 DPL~wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 189 (205)
-|+ .||+|+|.+.-||..... .|...+++++++.++|
T Consensus 100 ~PV-~~gvlt~~~~eqa~~R~~~~~~nkG~eaA~aal~m~~l~~~l 144 (144)
T PF00885_consen 100 IPV-IFGVLTPDTEEQALERAGGKAGNKGREAAEAALEMAKLLRQL 144 (144)
T ss_dssp SEE-EEEEEEESSHHHHHHHCEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred ccE-EEEecCCCCHHHHHHHhcchhhhhHHHHHHHHHHHHHHHhcC
Confidence 344 699999999999988764 4666777888877765
No 19
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=28.81 E-value=83 Score=21.21 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028691 160 LVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVH 197 (205)
Q Consensus 160 LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~ 197 (205)
+.+..+-.|++.|.+-++.+| ++++-=+.+.-+....+
T Consensus 2 lse~Df~eC~~FF~rPlp~li~~~a~sl~~l~~~~s~~Q 40 (55)
T PF05338_consen 2 LSENDFEECLKFFSRPLPELIDECAKSLSDLRLVDSQTQ 40 (55)
T ss_pred CcHHHHHHHHHHHcCcHHHHHHHHHHHHhhhhhhcchHH
Confidence 456778899999999999998 77776666665544444
No 20
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=27.91 E-value=55 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHHHhhhccCCc
Q 028691 42 SLSSTLSQGWLELASARHAMGAS 64 (205)
Q Consensus 42 ~L~~~~~~G~l~LARAry~~G~~ 64 (205)
.....+....+++..|+|++|.+
T Consensus 43 ~~~~~~~~~~~~~l~~~YS~G~~ 65 (117)
T PF08928_consen 43 NYYWSIFDYYLELLIAKYSAGDS 65 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Confidence 55667778889999999999975
No 21
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.24 E-value=44 Score=21.19 Aligned_cols=14 Identities=43% Similarity=0.389 Sum_probs=11.9
Q ss_pred HHHHHHhhhccCCc
Q 028691 51 WLELASARHAMGAS 64 (205)
Q Consensus 51 ~l~LARAry~~G~~ 64 (205)
-++||||.+.||+.
T Consensus 2 kLdLA~ayie~Gd~ 15 (44)
T TIGR03504 2 KLDLARAYIEMGDL 15 (44)
T ss_pred chHHHHHHHHcCCh
Confidence 47999999999874
No 22
>PHA01745 hypothetical protein
Probab=22.49 E-value=94 Score=27.80 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=12.4
Q ss_pred hhhccCCCChhHHHHH
Q 028691 154 LSVFGVLVSPKLRSAQ 169 (205)
Q Consensus 154 L~wFG~LvP~sLR~AQ 169 (205)
.-=||++||+++-.+.
T Consensus 128 ~iAfGG~Vp~s~~~sr 143 (306)
T PHA01745 128 YIAFGGIVASSKLKIL 143 (306)
T ss_pred hhhccccccHHhhhhH
Confidence 5569999999976444
No 23
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.59 E-value=2.3e+02 Score=21.38 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=31.6
Q ss_pred cCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 028691 158 GVLVSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVH 197 (205)
Q Consensus 158 G~LvP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~ 197 (205)
|++|-.++..|...+.+-++.+- .+.+++..+..+..++.
T Consensus 78 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~ 118 (129)
T cd00584 78 GYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQIN 118 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999988887 66677777766666655
No 24
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=21.38 E-value=90 Score=25.30 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=26.5
Q ss_pred cchhhccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHH
Q 028691 152 KSLSVFGVLVSPKLRSAQLSFE--------RALETLVEIANLHT 187 (205)
Q Consensus 152 DPL~wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~ 187 (205)
-|+ -||+|+|...-||...-. .|...+++++|+.+
T Consensus 109 ~PV-~~GVLt~~~~eqA~~rag~~~gnkG~~Aa~aAlem~~l~~ 151 (152)
T COG0054 109 VPV-TFGVLTTDNIEQAIERAGTKAGNKGAEAAEAALEMANLLK 151 (152)
T ss_pred CCe-EeeecCCCcHHHHHHHhCccccccHHHHHHHHHHHHHHhc
Confidence 454 599999999988876432 67888888888754
No 25
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.08 E-value=2.5e+02 Score=23.84 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=27.2
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 028691 164 KLRSAQLSFER-ALETLVEIANLHTTMLSMFEQVH 197 (205)
Q Consensus 164 sLR~AQ~~F~~-ale~~velanlq~~i~~~~~~i~ 197 (205)
.|..++++|.+ +|++++++-.+|..|..++.++-
T Consensus 144 qL~e~Rk~Y~~aSLDyv~qi~~lq~~lDkllv~~~ 178 (214)
T cd07609 144 QLFEARKAYLKASLDLVIAIPQLRLTLDKLLVDII 178 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777765 78999999999999998877654
No 26
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=20.76 E-value=1.4e+02 Score=26.88 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHhhccC
Q 028691 163 PKLRSAQLSFERALETLV--EIANLHTTMLSMFEQVH-KELENTN 204 (205)
Q Consensus 163 ~sLR~AQ~~F~~ale~~v--elanlq~~i~~~~~~i~-~~~~~~~ 204 (205)
-.--.||.+|..|+...+ .|---+-++++.+.... ++.+.||
T Consensus 93 k~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ~~~Tn 137 (368)
T COG5091 93 KDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQKDSTN 137 (368)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhhccccC
Confidence 455679999999999988 67777888888877766 7777776
No 27
>PHA03011 hypothetical protein; Provisional
Probab=20.41 E-value=1.6e+02 Score=22.37 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.0
Q ss_pred ccchhhhhhHHHHHHHhcHHHHHHHHHHHH
Q 028691 15 IGRQKQVKDEYLLQFLDSLDGYLTLLDSLS 44 (205)
Q Consensus 15 ~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~ 44 (205)
+......+|++.++|=.|+++|..+-....
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k 88 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIK 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667789999999999999998876443
No 28
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.05 E-value=1.3e+02 Score=18.34 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028691 170 LSFERALETLVEIANLHTTM 189 (205)
Q Consensus 170 ~~F~~ale~~velanlq~~i 189 (205)
.+|.+|++....+.++|.++
T Consensus 15 e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 15 ENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 45667777776666666654
Done!