Query 028691
Match_columns 205
No_of_seqs 115 out of 177
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 02:05:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_A V-type sodium ATPase su 98.1 2.4E-05 8.3E-10 65.2 11.3 139 13-200 31-171 (217)
2 3a5c_G V-type ATP synthase sub 97.8 2.3E-05 8E-10 65.6 4.9 134 14-200 24-158 (223)
3 1rh4_A Right-handed coiled coi 37.1 58 0.002 18.5 4.0 21 181-201 14-34 (35)
4 1c2y_A Protein (lumazine synth 30.1 37 0.0013 26.4 3.1 34 156-189 112-153 (156)
5 3nq4_A 6,7-dimethyl-8-ribityll 25.1 31 0.0011 26.8 1.8 34 156-189 113-154 (156)
6 2i0f_A 6,7-dimethyl-8-ribityll 22.5 51 0.0018 25.6 2.6 34 156-189 114-155 (157)
7 3ghg_A Fibrinogen alpha chain; 19.8 2.1E+02 0.0071 26.6 6.4 38 161-198 111-149 (562)
8 1hqk_A 6,7-dimethyl-8-ribityll 18.7 59 0.002 25.1 2.2 34 156-189 112-153 (154)
9 1ykh_A RNA polymerase II media 18.7 86 0.0029 22.9 3.0 41 15-55 19-66 (108)
10 1k1f_A Breakpoint cluster regi 18.1 1.1E+02 0.0037 20.6 3.0 24 176-199 28-52 (72)
No 1
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=98.12 E-value=2.4e-05 Score=65.23 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=91.9
Q ss_pred ccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhh-hhhhceeEeeccccCC
Q 028691 13 NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDVDS 91 (205)
Q Consensus 13 ~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~-~~~~~~v~v~~~~~~~ 91 (205)
++..=.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+.. ... ......|.+....+=+
T Consensus 31 rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~nImG 106 (217)
T 3aon_A 31 RGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE----LLALPAENVSISVVEKNIMS 106 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH----HHTSCSCCCEEEEEEEEETT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH----HHhCCCCceEEEEEEEEEEE
Confidence 33344556668899999999999999999999999999999999999998642221 000 0000123332210000
Q ss_pred CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691 92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL 170 (205)
Q Consensus 92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~ 170 (205)
=..|.|.... . . ......| -||.+ .|+.+-.|-.
T Consensus 107 -V~vP~~~~~~-----~----------------------~---------------~~~~~~~--~ygl~~t~~~ld~a~~ 141 (217)
T 3aon_A 107 -VKVPLMNFQY-----D----------------------E---------------TLNETPL--EYGYLHSNAELDRSID 141 (217)
T ss_dssp -EEEEEEEEEC-----C----------------------G---------------GGTTSCC--CCCCTTCCHHHHHHHH
T ss_pred -EEeceEEEEe-----c----------------------c---------------cccCCcC--CcCcccCCHHHHHHHH
Confidence 0011221110 0 0 0001111 25665 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691 171 SFERALETLVEIANLHTTMLSMFEQVHKEL 200 (205)
Q Consensus 171 ~F~~ale~~velanlq~~i~~~~~~i~~~~ 200 (205)
.|..+++.+|++|+++..+..+-.+|+++.
T Consensus 142 ~~~~~l~~lvelA~le~~~~~L~~eIkkT~ 171 (217)
T 3aon_A 142 GFTQLLPKLLKLAEVEKTCQLMAEEIEKTR 171 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
No 2
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=97.76 E-value=2.3e-05 Score=65.64 Aligned_cols=134 Identities=18% Similarity=0.247 Sum_probs=52.5
Q ss_pred cccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCCCC
Q 028691 14 GIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSME 93 (205)
Q Consensus 14 ~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~~~ 93 (205)
+..-.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+..-.... .. ...|.+.. +
T Consensus 24 G~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~--~~-~~~v~~~~------~ 94 (223)
T 3a5c_G 24 GVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALGV--PP-LEGVEAEV------E 94 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhcC--CC-CeEEEEEE------E
Confidence 334455666889999999999999999999999999999999999999875433200000 00 01121111 0
Q ss_pred CCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHHHH
Q 028691 94 SQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQLSF 172 (205)
Q Consensus 94 ~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~~F 172 (205)
+.-.+.+ +.+. . ......| ||.+ .|+.+-.|-..|
T Consensus 95 nImGV~v--------------------P~~~-----------~----------~~~~~~~---ygl~~t~~~ld~a~~~~ 130 (223)
T 3a5c_G 95 NVWGSKV--------------------PRLK-----------A----------TFPDGAL---LSPVGTPAYTLEASRAF 130 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEe--------------------ceEE-----------e----------ccCCCCC---cCcccCCHHHHHHHHHH
Confidence 0000000 0000 0 0000112 5666 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691 173 ERALETLVEIANLHTTMLSMFEQVHKEL 200 (205)
Q Consensus 173 ~~ale~~velanlq~~i~~~~~~i~~~~ 200 (205)
..+++.+|++|+++..+..+-.+|+++.
T Consensus 131 ~~~l~~lvelA~le~~~~~L~~eIkkT~ 158 (223)
T 3a5c_G 131 RRYAEALIRVANTETRLKKIGEEIKKTT 158 (223)
T ss_dssp -CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 3
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=37.13 E-value=58 Score=18.49 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028691 181 EIANLHTTMLSMFEQVHKELE 201 (205)
Q Consensus 181 elanlq~~i~~~~~~i~~~~~ 201 (205)
-+|.++++|.....+|+++|-
T Consensus 14 llakikaeilaalkkikqeia 34 (35)
T 1rh4_A 14 LLAKIKAEILAALKKIKQEIA 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 578888999999999998873
No 4
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=30.14 E-value=37 Score=26.37 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=24.8
Q ss_pred hccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028691 156 VFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 189 (205)
Q Consensus 156 wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 189 (205)
.||+|+|.+.-||-... ..|...+++++|+.++|
T Consensus 112 ~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aAlem~~l~~~l 153 (156)
T 1c2y_A 112 VFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHH 153 (156)
T ss_dssp EEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 59999999998877643 23556666777776665
No 5
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=25.06 E-value=31 Score=26.83 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.0
Q ss_pred hccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028691 156 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 189 (205)
Q Consensus 156 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 189 (205)
.||+|+|.+.-||-.... .|-..+++++|+.++|
T Consensus 113 ~~GVLT~~~~eQA~~Rag~~~~nKG~eaA~aalem~~l~~~l 154 (156)
T 3nq4_A 113 AFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAI 154 (156)
T ss_dssp EEEEEEESCHHHHHHHBTSTTCBHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh
Confidence 599999999999987542 4666677888876654
No 6
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=22.53 E-value=51 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=25.6
Q ss_pred hccCCCChhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Q 028691 156 VFGVLVSPKLRSAQLSFE--------RALETLVEIANLHTTM 189 (205)
Q Consensus 156 wFG~LvP~sLR~AQ~~F~--------~ale~~velanlq~~i 189 (205)
.||+|+|.+.-||-.... .|...+++++|+.++|
T Consensus 114 ~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aAlem~~l~~~l 155 (157)
T 2i0f_A 114 GNGILTVENEEQAWVHARREDKDKGGFAARAALTMIGLRKKF 155 (157)
T ss_dssp EEEEEEESSHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCHHHHHHHhCccccccHHHHHHHHHHHHHHHHHh
Confidence 599999999999987652 3556666777777654
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=19.79 E-value=2.1e+02 Score=26.64 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=31.2
Q ss_pred CChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 028691 161 VSPKLRSAQLSFERALETLV-EIANLHTTMLSMFEQVHK 198 (205)
Q Consensus 161 vP~sLR~AQ~~F~~ale~~v-elanlq~~i~~~~~~i~~ 198 (205)
+...||.-...-+.-|+.-+ .|+.||+.|+.+..+|+|
T Consensus 111 ~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 111 VSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788988888888777776 888899999888888775
No 8
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=18.71 E-value=59 Score=25.11 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=25.1
Q ss_pred hccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028691 156 VFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 189 (205)
Q Consensus 156 wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 189 (205)
.||+|+|.+.-||-... ..|-..+++++|+.++|
T Consensus 112 ~~GVLT~~~~eQA~~Rag~~~~nkG~eaA~aalem~~l~~~l 153 (154)
T 1hqk_A 112 TFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSL 153 (154)
T ss_dssp EEEEEEESSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence 59999999999987654 23556666777777654
No 9
>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A
Probab=18.65 E-value=86 Score=22.88 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=33.1
Q ss_pred ccchhhhhhHHHHHHHhcHH-------HHHHHHHHHHHHhHHHHHHHH
Q 028691 15 IGRQKQVKDEYLLQFLDSLD-------GYLTLLDSLSSTLSQGWLELA 55 (205)
Q Consensus 15 ~~~~~~~~D~lll~~L~lLd-------~Y~~L~~~L~~~~~~G~l~LA 55 (205)
++..+....++++.||+|++ .|....+.+...|.+.++-|=
T Consensus 19 ~~ELkkLn~SlL~nfLeLl~~l~~~P~~~~~kv~di~~lfiNmHhLlN 66 (108)
T 1ykh_A 19 IQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLLN 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999987 578888899998888776653
No 10
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=18.05 E-value=1.1e+02 Score=20.57 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH
Q 028691 176 LETLV-EIANLHTTMLSMFEQVHKE 199 (205)
Q Consensus 176 le~~v-elanlq~~i~~~~~~i~~~ 199 (205)
|..+- +|-+|+..|..+..++.+|
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~E 52 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQE 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44444 8889999999998888765
Done!