Query 028691
Match_columns 205
No_of_seqs 115 out of 177
Neff 6.4
Searched_HMMs 13730
Date Tue Mar 26 02:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028691.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028691hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k0ia2 d.16.1.2 (A:174-275) p 32.7 3.4 0.00025 28.4 -0.6 13 152-164 8-22 (102)
2 d1rvv1_ c.16.1.1 (1:) Lumazine 30.8 14 0.001 26.8 2.6 37 152-189 109-153 (154)
3 d1c2ya_ c.16.1.1 (A:) Lumazine 26.6 32 0.0023 24.8 4.0 37 152-189 109-153 (155)
4 d1ykha1 a.252.1.2 (A:111-205) 25.1 23 0.0017 23.7 2.7 44 11-54 2-52 (95)
5 d1nqua_ c.16.1.1 (A:) Lumazine 22.4 30 0.0022 24.9 3.1 39 150-189 107-153 (154)
6 d2f66c1 a.2.17.3 (C:142-206) V 21.3 27 0.0019 21.6 2.2 38 7-44 23-62 (65)
7 d1di0a_ c.16.1.1 (A:) Lumazine 19.7 12 0.00087 27.0 0.3 37 152-189 99-146 (148)
8 d1seza2 d.16.1.5 (A:330-441) P 18.3 16 0.0012 24.6 0.7 15 150-164 17-31 (112)
9 d2cvea1 d.14.1.11 (A:2-124) Hy 15.2 44 0.0032 23.2 2.5 26 154-182 90-117 (123)
10 d1vf6a_ a.194.1.1 (A:) Associa 12.6 1.3E+02 0.0097 17.8 3.9 27 171-197 26-54 (58)
No 1
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.65 E-value=3.4 Score=28.41 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=10.1
Q ss_pred cchhhccCC--CChh
Q 028691 152 KSLSVFGVL--VSPK 164 (205)
Q Consensus 152 DPL~wFG~L--vP~s 164 (205)
=|.-|||+| +||+
T Consensus 8 YPfgWLGiLaeapP~ 22 (102)
T d1k0ia2 8 YPFGWLGLLADTPPV 22 (102)
T ss_dssp EEEEEEEEEESSCCS
T ss_pred ccchhhhhhhcCCCC
Confidence 488999999 5653
No 2
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=30.76 E-value=14 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=27.8
Q ss_pred cchhhccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028691 152 KSLSVFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 189 (205)
Q Consensus 152 DPL~wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 189 (205)
-|+ -||+|++.+..||.... ..|...+++++++.+++
T Consensus 109 ~PV-~~GILt~~n~~QA~~R~~~~~~nKG~eaA~aal~m~~l~r~l 153 (154)
T d1rvv1_ 109 VPV-IFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSF 153 (154)
T ss_dssp SCE-EEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHT
T ss_pred CCE-EEeecCCCCHHHHHHHhcCcccccHHHHHHHHHHHHHHHhhc
Confidence 455 58999999999998853 24666777888887765
No 3
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=26.58 E-value=32 Score=24.78 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=26.6
Q ss_pred cchhhccCCCChhHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 028691 152 KSLSVFGVLVSPKLRSAQLSF--------ERALETLVEIANLHTTM 189 (205)
Q Consensus 152 DPL~wFG~LvP~sLR~AQ~~F--------~~ale~~velanlq~~i 189 (205)
-|+ -||+|+|...-||.... ..|...+++++++..++
T Consensus 109 ~PV-~~GILT~~n~~QA~~R~~~~~~nkG~eaa~aal~m~~l~~~~ 153 (155)
T d1c2ya_ 109 VPC-VFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHH 153 (155)
T ss_dssp SCE-EEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCE-EecccCCCCHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 344 59999999999998764 23566666777776554
No 4
>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.05 E-value=23 Score=23.66 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=34.0
Q ss_pred ccccccchhhhhhHHHHHHHhcHH-------HHHHHHHHHHHHhHHHHHHH
Q 028691 11 AENGIGRQKQVKDEYLLQFLDSLD-------GYLTLLDSLSSTLSQGWLEL 54 (205)
Q Consensus 11 ~~~~~~~~~~~~D~lll~~L~lLd-------~Y~~L~~~L~~~~~~G~l~L 54 (205)
++..+++.+-...++++.||+|++ .|....+.|...|.+...-|
T Consensus 2 ~~~k~~ELkkln~sll~nfleLl~~l~~~P~~~~~kvedl~~LfiN~Hhll 52 (95)
T d1ykha1 2 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMYERKVENIRTILVNIHHLL 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhCccchHhhHHHHHHHHHHHHHHH
Confidence 345567778888899999999875 67888888888888766655
No 5
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=22.44 E-value=30 Score=24.88 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=28.7
Q ss_pred cccchhhccCCCChhHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 028691 150 RQKSLSVFGVLVSPKLRSAQLS--------FERALETLVEIANLHTTM 189 (205)
Q Consensus 150 ~~DPL~wFG~LvP~sLR~AQ~~--------F~~ale~~velanlq~~i 189 (205)
..-|+- ||+|++..+-||... =..|...+++++++.++|
T Consensus 107 ~~~Pi~-~GILt~~n~~QA~eR~~~~~~nkG~eaA~aal~mi~l~r~l 153 (154)
T d1nqua_ 107 LRKPIT-FGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSL 153 (154)
T ss_dssp HTSCEE-EEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEE-EeecCCCCHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhc
Confidence 345764 999999999999884 334666667787777665
No 6
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.33 E-value=27 Score=21.55 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=26.8
Q ss_pred hhccccccccch--hhhhhHHHHHHHhcHHHHHHHHHHHH
Q 028691 7 EKGNAENGIGRQ--KQVKDEYLLQFLDSLDGYLTLLDSLS 44 (205)
Q Consensus 7 ~~~~~~~~~~~~--~~~~D~lll~~L~lLd~Y~~L~~~L~ 44 (205)
++.-+|++.... ...+|..+-+||++=-+|..-|+-|.
T Consensus 23 ~s~~l~~~~r~~~~s~elD~Fi~qYl~~RTeYH~rREKLa 62 (65)
T d2f66c1 23 ESSQLETTTRSIDSADDLDQFIKNYLDIRTQYHLRREKLA 62 (65)
T ss_dssp HHHHHHHHCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455444433 34489999999999999998888775
No 7
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=19.67 E-value=12 Score=26.98 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=24.6
Q ss_pred cchhhccCCCChhHHHHHHHHH--------H---HHHHHHHHHHHHHHH
Q 028691 152 KSLSVFGVLVSPKLRSAQLSFE--------R---ALETLVEIANLHTTM 189 (205)
Q Consensus 152 DPL~wFG~LvP~sLR~AQ~~F~--------~---ale~~velanlq~~i 189 (205)
-|+ -||+|+|...-||...-. + |...+++++++.++|
T Consensus 99 ~Pv-~~gVLt~~n~~QA~~R~~~~~~~~~nKG~EaA~aal~mi~~~~~l 146 (148)
T d1di0a_ 99 VPV-LSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRI 146 (148)
T ss_dssp CCE-EEEEECBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcE-EEEeccCCCHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHh
Confidence 453 689999998888865432 2 455566777766654
No 8
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=18.32 E-value=16 Score=24.63 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=12.0
Q ss_pred cccchhhccCCCChh
Q 028691 150 RQKSLSVFGVLVSPK 164 (205)
Q Consensus 150 ~~DPL~wFG~LvP~s 164 (205)
...|++=||.|||++
T Consensus 17 ~~~~~~GfG~LVP~~ 31 (112)
T d1seza2 17 VKYPLEGFGVLVPSK 31 (112)
T ss_dssp BSSCCCSSEEECCGG
T ss_pred cCCCCCceEEEeCCc
Confidence 456788899999975
No 9
>d2cvea1 d.14.1.11 (A:2-124) Hypothetical protein TTHA1053, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=15.22 E-value=44 Score=23.16 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=13.6
Q ss_pred hhhccCC-C-ChhHHHHHHHHHHHHHHHHHH
Q 028691 154 LSVFGVL-V-SPKLRSAQLSFERALETLVEI 182 (205)
Q Consensus 154 L~wFG~L-v-P~sLR~AQ~~F~~ale~~vel 182 (205)
.||||+. . |.-|- ..|..|...+++-
T Consensus 90 ~RyFGGi~LG~ggl~---ray~~aa~~al~~ 117 (123)
T d2cvea1 90 VRYFGGVKLGAGGLV---RAYGGVAAEALRR 117 (123)
T ss_dssp EEECCSSCCHHHHHH---HHHHHHHHHHHHH
T ss_pred EEeeCCeecCCchHH---HHHHHHHHHHHHH
Confidence 3999884 3 23342 2345555555543
No 10
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.62 E-value=1.3e+02 Score=17.84 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=18.7
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 028691 171 SFERALETLV--EIANLHTTMLSMFEQVH 197 (205)
Q Consensus 171 ~F~~ale~~v--elanlq~~i~~~~~~i~ 197 (205)
.|+..++... .+.++|..|..+-.++.
T Consensus 26 ~lk~~LqSPLF~qiL~lQ~SiqqLk~Qvn 54 (58)
T d1vf6a_ 26 MFYETLKSPLFNQILTLQQSIKQLKGQLN 54 (58)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444 88999998887776654
Done!