Query 028692
Match_columns 205
No_of_seqs 160 out of 2308
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 15:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.7E-21 3.6E-26 136.1 14.9 129 68-203 8-137 (160)
2 KOG0027 Calmodulin and related 99.8 4.1E-19 8.8E-24 126.0 14.4 124 74-203 2-130 (151)
3 KOG0028 Ca2+-binding protein ( 99.8 8.8E-19 1.9E-23 120.1 13.5 126 72-203 25-151 (172)
4 KOG0034 Ca2+/calmodulin-depend 99.8 7.5E-18 1.6E-22 121.7 16.0 135 63-204 12-153 (187)
5 KOG0044 Ca2+ sensor (EF-Hand s 99.7 1.1E-16 2.4E-21 115.8 14.6 128 57-189 6-135 (193)
6 PTZ00183 centrin; Provisional 99.7 1.8E-16 4E-21 113.1 15.7 126 72-203 9-135 (158)
7 PTZ00184 calmodulin; Provision 99.7 3.7E-16 8.1E-21 110.3 15.1 126 72-203 3-129 (149)
8 KOG0031 Myosin regulatory ligh 99.7 9.7E-16 2.1E-20 104.5 13.3 122 72-203 24-146 (171)
9 KOG0030 Myosin essential light 99.6 3.5E-14 7.5E-19 95.3 10.6 122 74-201 5-131 (152)
10 PLN02964 phosphatidylserine de 99.6 9.5E-14 2.1E-18 117.0 14.6 139 57-202 118-273 (644)
11 KOG0037 Ca2+-binding protein, 99.6 1.3E-13 2.9E-18 99.7 12.9 111 80-203 57-169 (221)
12 KOG0027 Calmodulin and related 99.5 2.6E-13 5.7E-18 96.2 13.4 129 47-181 12-148 (151)
13 COG5126 FRQ1 Ca2+-binding prot 99.5 5.9E-13 1.3E-17 93.3 13.5 136 39-181 16-155 (160)
14 KOG0038 Ca2+-binding kinase in 99.5 4E-13 8.6E-18 91.0 11.7 144 55-204 3-155 (189)
15 PTZ00183 centrin; Provisional 99.5 9.7E-13 2.1E-17 93.8 14.0 132 44-181 18-153 (158)
16 KOG0044 Ca2+ sensor (EF-Hand s 99.5 6.7E-13 1.4E-17 96.2 11.5 123 57-181 41-174 (193)
17 KOG0036 Predicted mitochondria 99.5 1.9E-12 4E-17 101.7 13.2 118 75-204 9-128 (463)
18 KOG0037 Ca2+-binding protein, 99.5 2.3E-12 5E-17 93.3 12.3 156 5-179 58-217 (221)
19 PTZ00184 calmodulin; Provision 99.4 6.5E-12 1.4E-16 88.5 13.3 130 45-180 13-146 (149)
20 KOG0034 Ca2+/calmodulin-depend 99.3 1.6E-10 3.5E-15 83.8 12.6 119 56-181 47-174 (187)
21 KOG0028 Ca2+-binding protein ( 99.2 5.2E-10 1.1E-14 77.2 12.7 132 44-181 34-169 (172)
22 KOG4223 Reticulocalbin, calume 99.2 4.5E-10 9.7E-15 86.1 11.5 187 7-202 80-285 (325)
23 PF13499 EF-hand_7: EF-hand do 99.1 2.9E-10 6.3E-15 69.0 7.1 62 119-180 2-66 (66)
24 PF13499 EF-hand_7: EF-hand do 99.1 2.4E-10 5.1E-15 69.4 5.6 60 82-143 2-66 (66)
25 cd05022 S-100A13 S-100A13: S-1 99.0 2.2E-09 4.8E-14 68.6 7.8 70 77-147 5-77 (89)
26 smart00027 EH Eps15 homology d 99.0 3.7E-09 8.1E-14 69.0 8.5 71 74-147 4-74 (96)
27 cd05026 S-100Z S-100Z: S-100Z 99.0 4E-09 8.6E-14 68.4 8.5 70 77-147 7-83 (93)
28 cd05027 S-100B S-100B: S-100B 98.9 6.5E-09 1.4E-13 66.5 7.9 68 77-146 5-80 (88)
29 cd05029 S-100A6 S-100A6: S-100 98.9 1.5E-08 3.2E-13 64.9 8.5 69 77-146 7-80 (88)
30 cd05022 S-100A13 S-100A13: S-1 98.9 8.3E-09 1.8E-13 66.0 6.6 67 119-185 10-78 (89)
31 KOG2562 Protein phosphatase 2 98.8 5.7E-08 1.2E-12 77.9 11.8 107 73-184 271-381 (493)
32 KOG0036 Predicted mitochondria 98.8 8.7E-08 1.9E-12 75.9 12.2 122 53-181 24-145 (463)
33 cd00052 EH Eps15 homology doma 98.8 2.2E-08 4.9E-13 60.6 7.2 57 85-144 4-60 (67)
34 cd05025 S-100A1 S-100A1: S-100 98.8 2.3E-08 5.1E-13 64.7 7.2 66 79-146 8-81 (92)
35 cd05023 S-100A11 S-100A11: S-1 98.8 3.6E-08 7.9E-13 63.2 7.9 69 76-146 5-81 (89)
36 cd05027 S-100B S-100B: S-100B 98.8 4.8E-08 1E-12 62.5 8.3 68 118-185 9-82 (88)
37 KOG0040 Ca2+-binding actin-bun 98.8 1.4E-07 3E-12 84.6 13.0 118 72-203 2245-2371(2399)
38 cd00213 S-100 S-100: S-100 dom 98.8 5.4E-08 1.2E-12 62.5 7.9 71 76-146 4-80 (88)
39 cd00051 EFh EF-hand, calcium b 98.8 7.3E-08 1.6E-12 56.9 7.6 61 119-180 2-62 (63)
40 smart00027 EH Eps15 homology d 98.8 1E-07 2.2E-12 62.2 8.8 73 118-193 11-84 (96)
41 PF13833 EF-hand_8: EF-hand do 98.7 2.6E-08 5.7E-13 57.7 5.0 49 131-180 2-51 (54)
42 cd00252 SPARC_EC SPARC_EC; ext 98.7 6.1E-08 1.3E-12 65.1 7.4 57 119-180 50-106 (116)
43 cd05026 S-100Z S-100Z: S-100Z 98.7 1.1E-07 2.3E-12 61.6 8.3 66 119-184 12-83 (93)
44 cd00252 SPARC_EC SPARC_EC; ext 98.7 1E-07 2.2E-12 64.0 8.0 64 75-143 43-106 (116)
45 PF00036 EF-hand_1: EF hand; 98.7 1.9E-08 4.2E-13 50.2 3.2 26 156-181 2-27 (29)
46 KOG0377 Protein serine/threoni 98.7 1.8E-07 3.8E-12 74.8 10.0 121 81-203 465-596 (631)
47 cd05031 S-100A10_like S-100A10 98.7 1.4E-07 3E-12 61.3 7.9 65 80-145 8-79 (94)
48 cd00052 EH Eps15 homology doma 98.7 1.6E-07 3.5E-12 56.8 7.8 60 120-182 2-61 (67)
49 KOG0031 Myosin regulatory ligh 98.7 2.1E-06 4.5E-11 59.3 13.7 133 39-181 28-164 (171)
50 PF13833 EF-hand_8: EF-hand do 98.7 1.1E-07 2.4E-12 55.1 6.4 51 95-145 1-53 (54)
51 cd05031 S-100A10_like S-100A10 98.7 1.8E-07 3.8E-12 60.8 7.9 64 119-182 10-79 (94)
52 cd05025 S-100A1 S-100A1: S-100 98.7 2.2E-07 4.8E-12 60.1 8.3 67 118-184 10-82 (92)
53 cd05030 calgranulins Calgranul 98.7 1.7E-07 3.8E-12 60.0 7.5 70 77-146 5-80 (88)
54 cd05029 S-100A6 S-100A6: S-100 98.6 2.7E-07 5.8E-12 59.1 8.1 66 119-184 12-81 (88)
55 cd00213 S-100 S-100: S-100 dom 98.6 2.6E-07 5.6E-12 59.2 7.5 65 119-183 10-80 (88)
56 KOG4223 Reticulocalbin, calume 98.6 1.1E-06 2.4E-11 67.7 11.8 166 11-179 120-302 (325)
57 cd05024 S-100A10 S-100A10: A s 98.6 9.6E-07 2.1E-11 56.2 8.7 68 77-147 5-78 (91)
58 KOG2643 Ca2+ binding protein, 98.5 8.9E-07 1.9E-11 70.7 9.3 171 4-184 233-455 (489)
59 KOG0041 Predicted Ca2+-binding 98.5 1.3E-06 2.9E-11 62.8 9.3 108 70-179 89-200 (244)
60 PF00036 EF-hand_1: EF hand; 98.5 2.2E-07 4.8E-12 46.3 3.6 27 119-145 2-28 (29)
61 cd05023 S-100A11 S-100A11: S-1 98.5 1.4E-06 3.1E-11 55.8 8.2 66 119-184 11-82 (89)
62 cd00051 EFh EF-hand, calcium b 98.5 1.2E-06 2.6E-11 51.5 7.0 60 82-143 2-62 (63)
63 KOG0038 Ca2+-binding kinase in 98.4 1.4E-06 3E-11 59.6 7.1 95 82-181 76-176 (189)
64 cd05030 calgranulins Calgranul 98.4 1.9E-06 4.1E-11 55.2 7.5 68 119-186 10-83 (88)
65 PF13405 EF-hand_6: EF-hand do 98.3 6.4E-07 1.4E-11 45.5 3.3 27 155-181 1-27 (31)
66 KOG4251 Calcium binding protei 98.3 8.7E-06 1.9E-10 60.6 9.4 171 7-180 104-307 (362)
67 PF13202 EF-hand_5: EF hand; P 98.3 1.1E-06 2.3E-11 42.2 3.1 24 156-179 1-24 (25)
68 PF12763 EF-hand_4: Cytoskelet 98.2 2.3E-06 5E-11 56.3 5.0 70 73-146 3-72 (104)
69 PF14658 EF-hand_9: EF-hand do 98.2 7.9E-06 1.7E-10 48.6 6.6 60 122-181 3-63 (66)
70 KOG0751 Mitochondrial aspartat 98.2 1.9E-05 4.1E-10 64.3 10.5 103 75-182 31-136 (694)
71 PLN02964 phosphatidylserine de 98.2 1.7E-05 3.7E-10 67.9 10.7 98 43-146 143-244 (644)
72 PRK12309 transaldolase/EF-hand 98.1 1.2E-05 2.5E-10 65.2 7.3 55 116-184 333-387 (391)
73 PF14658 EF-hand_9: EF-hand do 98.0 1.8E-05 3.9E-10 47.1 5.4 60 85-146 3-65 (66)
74 KOG0030 Myosin essential light 98.0 6.9E-05 1.5E-09 51.0 8.6 120 56-180 24-149 (152)
75 KOG0033 Ca2+/calmodulin-depend 98.0 1.6E-06 3.4E-11 65.1 0.8 34 1-34 239-272 (355)
76 KOG0751 Mitochondrial aspartat 98.0 7.9E-05 1.7E-09 60.8 9.7 114 55-181 86-206 (694)
77 PF13202 EF-hand_5: EF hand; P 97.9 1.6E-05 3.4E-10 38.1 3.2 24 120-143 2-25 (25)
78 KOG0041 Predicted Ca2+-binding 97.9 0.00014 3.1E-09 52.5 9.0 80 118-200 100-179 (244)
79 KOG2643 Ca2+ binding protein, 97.9 7.6E-06 1.7E-10 65.6 2.5 53 129-184 211-263 (489)
80 cd05024 S-100A10 S-100A10: A s 97.8 0.00029 6.3E-09 45.0 8.3 65 119-184 10-78 (91)
81 KOG0377 Protein serine/threoni 97.8 0.00014 3.1E-09 58.6 8.1 166 9-181 426-614 (631)
82 PRK12309 transaldolase/EF-hand 97.7 9.8E-05 2.1E-09 60.0 6.7 53 80-146 334-386 (391)
83 PF14788 EF-hand_10: EF hand; 97.6 0.00034 7.3E-09 39.3 5.9 47 134-181 2-48 (51)
84 PF13405 EF-hand_6: EF-hand do 97.6 0.00011 2.5E-09 37.1 3.5 26 119-144 2-27 (31)
85 KOG0046 Ca2+-binding actin-bun 97.6 0.00034 7.3E-09 57.6 7.3 73 72-147 11-87 (627)
86 KOG4666 Predicted phosphate ac 97.5 0.0003 6.5E-09 54.6 6.3 85 95-182 240-324 (412)
87 PF14788 EF-hand_10: EF hand; 97.5 0.0004 8.7E-09 39.0 5.0 48 99-146 2-50 (51)
88 PF10591 SPARC_Ca_bdg: Secrete 97.4 9.7E-05 2.1E-09 49.5 2.5 57 82-141 56-112 (113)
89 KOG0032 Ca2+/calmodulin-depend 97.4 5E-05 1.1E-09 61.8 1.1 35 1-35 265-299 (382)
90 KOG0615 Serine/threonine prote 97.3 6.9E-05 1.5E-09 60.2 0.6 35 2-36 410-444 (475)
91 PF12763 EF-hand_4: Cytoskelet 97.3 0.0019 4.2E-08 42.5 6.9 62 118-183 11-72 (104)
92 KOG0169 Phosphoinositide-speci 97.2 0.0079 1.7E-07 52.0 12.1 117 78-203 134-251 (746)
93 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.00022 4.8E-09 47.8 1.9 63 114-179 51-113 (113)
94 smart00054 EFh EF-hand, calciu 97.1 0.00061 1.3E-08 32.8 2.9 26 156-181 2-27 (29)
95 KOG4251 Calcium binding protei 97.1 0.0017 3.7E-08 48.6 6.3 45 137-181 219-263 (362)
96 KOG0599 Phosphorylase kinase g 97.1 0.00017 3.8E-09 55.2 1.0 33 2-34 256-288 (411)
97 KOG4347 GTPase-activating prot 97.1 0.0035 7.7E-08 53.1 8.6 110 64-176 488-612 (671)
98 KOG0040 Ca2+-binding actin-bun 97.1 0.0028 6E-08 58.4 8.3 81 119-202 2255-2342(2399)
99 PLN03225 Serine/threonine-prot 96.9 0.0013 2.9E-08 56.4 4.7 118 6-142 427-545 (566)
100 smart00054 EFh EF-hand, calciu 96.8 0.0023 5E-08 30.6 3.4 26 119-144 2-27 (29)
101 KOG0604 MAP kinase-activated p 96.8 0.00035 7.6E-09 54.2 0.2 35 1-35 294-328 (400)
102 KOG4065 Uncharacterized conser 96.8 0.0072 1.6E-07 39.9 6.0 67 72-142 61-142 (144)
103 KOG4666 Predicted phosphate ac 96.7 0.0042 9.1E-08 48.5 5.3 98 80-181 259-358 (412)
104 KOG0660 Mitogen-activated prot 96.7 0.00076 1.6E-08 53.3 1.3 33 2-34 283-315 (359)
105 KOG1029 Endocytic adaptor prot 96.5 0.028 6.1E-07 48.9 9.5 69 74-146 10-78 (1118)
106 KOG0588 Serine/threonine prote 96.5 0.0011 2.4E-08 56.5 1.3 34 1-34 235-268 (786)
107 cd07875 STKc_JNK1 Catalytic do 96.3 0.0016 3.5E-08 52.6 1.1 32 3-34 292-323 (364)
108 cd07876 STKc_JNK2 Catalytic do 96.2 0.002 4.2E-08 52.0 1.4 32 3-34 289-320 (359)
109 PTZ00036 glycogen synthase kin 96.2 0.0018 4E-08 53.8 0.8 33 2-34 324-356 (440)
110 cd07874 STKc_JNK3 Catalytic do 96.1 0.0023 5E-08 51.4 1.1 32 3-34 285-316 (355)
111 KOG2562 Protein phosphatase 2 96.0 0.042 9.1E-07 45.1 7.8 172 5-179 226-421 (493)
112 cd07853 STKc_NLK Catalytic dom 95.9 0.0029 6.3E-08 51.3 1.0 34 3-36 262-295 (372)
113 KOG0666 Cyclin C-dependent kin 95.9 0.0034 7.5E-08 49.2 1.1 37 2-38 310-346 (438)
114 cd07859 STKc_TDY_MAPK_plant Ca 95.8 0.0039 8.4E-08 49.6 1.3 32 3-34 264-295 (338)
115 PF09279 EF-hand_like: Phospho 95.8 0.044 9.5E-07 34.4 5.8 61 119-180 2-67 (83)
116 cd07878 STKc_p38beta_MAPK11 Ca 95.8 0.0036 7.7E-08 50.1 0.9 31 4-34 273-303 (343)
117 KOG0659 Cdk activating kinase 95.6 0.0037 7.9E-08 47.9 0.4 36 2-37 254-289 (318)
118 cd07850 STKc_JNK Catalytic dom 95.5 0.0051 1.1E-07 49.4 0.7 31 4-34 286-316 (353)
119 KOG0607 MAP kinase-interacting 95.4 0.0032 7E-08 49.5 -0.5 36 1-36 333-368 (463)
120 KOG0035 Ca2+-binding actin-bun 95.4 0.12 2.6E-06 46.1 8.9 102 75-179 742-849 (890)
121 KOG1290 Serine/threonine prote 95.3 0.0055 1.2E-07 50.6 0.5 30 7-36 528-557 (590)
122 KOG0665 Jun-N-terminal kinase 95.3 0.0058 1.3E-07 47.9 0.5 31 3-33 284-314 (369)
123 KOG3555 Ca2+-binding proteogly 94.9 0.1 2.2E-06 41.3 6.3 101 74-181 201-309 (434)
124 cd06650 PKc_MEK1 Catalytic dom 94.9 0.012 2.6E-07 47.0 1.3 32 4-35 274-305 (333)
125 PF09279 EF-hand_like: Phospho 94.9 0.06 1.3E-06 33.7 4.2 63 82-147 2-71 (83)
126 cd07834 STKc_MAPK Catalytic do 94.9 0.011 2.5E-07 46.8 1.1 32 3-34 263-294 (330)
127 cd07854 STKc_MAPK4_6 Catalytic 94.9 0.011 2.4E-07 47.3 1.0 32 3-34 274-305 (342)
128 cd07858 STKc_TEY_MAPK_plant Ca 94.8 0.012 2.5E-07 47.1 1.0 32 3-34 265-296 (337)
129 KOG0667 Dual-specificity tyros 94.8 0.012 2.5E-07 50.0 1.0 30 6-35 479-508 (586)
130 KOG3555 Ca2+-binding proteogly 94.8 0.046 9.9E-07 43.2 4.1 61 81-146 251-311 (434)
131 cd07851 STKc_p38 Catalytic dom 94.7 0.011 2.5E-07 47.3 0.8 32 3-34 272-303 (343)
132 KOG4065 Uncharacterized conser 94.7 0.054 1.2E-06 35.9 3.7 59 121-179 71-142 (144)
133 KOG0583 Serine/threonine prote 94.7 0.015 3.2E-07 47.4 1.2 33 2-34 248-280 (370)
134 PHA03210 serine/threonine kina 94.7 0.016 3.4E-07 49.1 1.5 31 5-35 430-460 (501)
135 PF05042 Caleosin: Caleosin re 94.6 0.54 1.2E-05 33.7 8.8 62 119-181 98-165 (174)
136 cd07880 STKc_p38gamma_MAPK12 C 94.6 0.014 3E-07 46.8 0.9 33 3-35 272-304 (343)
137 PF08726 EFhand_Ca_insen: Ca2+ 94.5 0.023 5E-07 34.3 1.5 29 151-180 3-31 (69)
138 KOG4578 Uncharacterized conser 94.5 0.03 6.4E-07 43.9 2.5 63 119-181 335-397 (421)
139 KOG1707 Predicted Ras related/ 94.4 0.48 1E-05 40.4 9.5 107 73-181 188-342 (625)
140 cd07849 STKc_ERK1_2_like Catal 94.4 0.016 3.4E-07 46.2 0.9 32 3-34 266-297 (336)
141 KOG1167 Serine/threonine prote 94.4 0.027 5.8E-07 45.6 2.1 36 3-38 355-390 (418)
142 PF14513 DAG_kinase_N: Diacylg 94.4 0.07 1.5E-06 36.9 3.8 70 97-167 6-82 (138)
143 cd05571 STKc_PKB Catalytic dom 94.3 0.014 3.1E-07 46.3 0.5 35 2-36 219-258 (323)
144 cd07855 STKc_ERK5 Catalytic do 94.3 0.017 3.8E-07 46.0 0.9 34 3-36 268-301 (334)
145 KOG1955 Ral-GTPase effector RA 94.3 0.16 3.4E-06 42.3 6.2 73 72-147 223-295 (737)
146 KOG0585 Ca2+/calmodulin-depend 94.2 0.015 3.3E-07 48.1 0.4 32 3-34 346-377 (576)
147 KOG0610 Putative serine/threon 94.2 0.017 3.6E-07 46.9 0.6 35 1-35 360-398 (459)
148 KOG0663 Protein kinase PITSLRE 94.1 0.014 3E-07 46.3 -0.1 34 3-36 335-368 (419)
149 cd05612 STKc_PRKX_like Catalyt 94.0 0.018 3.8E-07 45.0 0.4 35 2-36 222-261 (291)
150 KOG0575 Polo-like serine/threo 94.0 0.024 5.3E-07 47.9 1.3 32 2-33 242-273 (592)
151 KOG0603 Ribosomal protein S6 k 94.0 0.019 4.1E-07 48.8 0.5 32 1-32 535-566 (612)
152 cd07879 STKc_p38delta_MAPK13 C 93.9 0.023 5.1E-07 45.4 0.9 32 4-35 272-303 (342)
153 cd07877 STKc_p38alpha_MAPK14 C 93.8 0.025 5.5E-07 45.3 1.0 32 3-34 274-305 (345)
154 PLN02952 phosphoinositide phos 93.8 0.53 1.1E-05 40.7 8.7 29 118-147 39-67 (599)
155 PF05042 Caleosin: Caleosin re 93.8 0.38 8.3E-06 34.5 6.7 98 82-181 9-123 (174)
156 KOG1029 Endocytic adaptor prot 93.8 0.11 2.3E-06 45.5 4.6 65 79-146 194-258 (1118)
157 KOG0579 Ste20-like serine/thre 93.8 0.029 6.3E-07 48.3 1.2 32 3-34 263-294 (1187)
158 cd05588 STKc_aPKC Catalytic do 93.7 0.022 4.9E-07 45.3 0.5 34 2-35 229-268 (329)
159 cd07857 STKc_MPK1 Catalytic do 93.7 0.031 6.6E-07 44.5 1.2 32 3-34 266-297 (332)
160 PTZ00263 protein kinase A cata 93.6 0.024 5.2E-07 45.2 0.5 34 2-35 239-277 (329)
161 cd05570 STKc_PKC Catalytic dom 93.6 0.024 5.1E-07 44.9 0.4 34 2-35 220-258 (318)
162 cd05590 STKc_nPKC_eta Catalyti 93.6 0.023 5E-07 45.0 0.4 35 2-36 220-260 (320)
163 KOG0669 Cyclin T-dependent kin 93.4 0.042 9.2E-07 42.1 1.5 39 2-40 288-326 (376)
164 cd05614 STKc_MSK2_N N-terminal 93.3 0.03 6.4E-07 44.6 0.6 34 2-35 235-273 (332)
165 cd05591 STKc_nPKC_epsilon Cata 93.2 0.031 6.7E-07 44.3 0.5 34 2-35 220-260 (321)
166 KOG0661 MAPK related serine/th 93.0 0.046 1E-06 45.2 1.2 33 2-34 264-296 (538)
167 cd05585 STKc_YPK1_like Catalyt 93.0 0.034 7.3E-07 43.9 0.4 34 2-35 217-253 (312)
168 KOG0198 MEKK and related serin 92.9 0.05 1.1E-06 43.2 1.3 34 2-35 249-282 (313)
169 cd05593 STKc_PKB_gamma Catalyt 92.7 0.038 8.2E-07 44.0 0.4 35 2-36 219-258 (328)
170 cd07852 STKc_MAPK15 Catalytic 92.4 0.06 1.3E-06 42.9 1.2 31 4-34 270-300 (337)
171 cd05619 STKc_nPKC_theta Cataly 92.4 0.048 1E-06 43.2 0.6 34 3-36 221-255 (316)
172 KOG0046 Ca2+-binding actin-bun 92.3 0.66 1.4E-05 39.0 6.9 63 119-182 21-85 (627)
173 cd05594 STKc_PKB_alpha Catalyt 92.3 0.042 9.1E-07 43.6 0.1 35 2-36 220-259 (325)
174 cd05596 STKc_ROCK Catalytic do 92.3 0.054 1.2E-06 44.0 0.8 34 2-35 275-310 (370)
175 cd05595 STKc_PKB_beta Catalyti 92.2 0.05 1.1E-06 43.2 0.4 35 2-36 219-258 (323)
176 cd07856 STKc_Sty1_Hog1 Catalyt 92.2 0.065 1.4E-06 42.7 1.1 31 4-34 263-293 (328)
177 cd05601 STKc_CRIK Catalytic do 92.1 0.057 1.2E-06 42.9 0.7 32 3-35 238-269 (330)
178 cd05620 STKc_nPKC_delta Cataly 92.1 0.05 1.1E-06 43.0 0.4 33 3-35 221-254 (316)
179 PTZ00426 cAMP-dependent protei 92.0 0.053 1.1E-06 43.5 0.4 35 2-36 252-291 (340)
180 cd05586 STKc_Sck1_like Catalyt 91.9 0.06 1.3E-06 42.8 0.6 34 2-35 222-259 (330)
181 cd06633 STKc_TAO3 Catalytic do 91.6 0.095 2.1E-06 41.3 1.5 33 4-36 248-280 (313)
182 cd05617 STKc_aPKC_zeta Catalyt 91.5 0.061 1.3E-06 42.8 0.3 34 2-35 227-266 (327)
183 KOG0042 Glycerol-3-phosphate d 91.5 0.53 1.2E-05 40.0 5.6 78 72-151 585-663 (680)
184 cd05618 STKc_aPKC_iota Catalyt 91.5 0.066 1.4E-06 42.6 0.5 33 3-35 230-268 (329)
185 cd06634 STKc_TAO2 Catalytic do 91.3 0.1 2.2E-06 41.1 1.3 31 4-34 242-272 (308)
186 cd05575 STKc_SGK Catalytic dom 91.3 0.072 1.6E-06 42.2 0.5 35 2-36 220-258 (323)
187 cd06607 STKc_TAO Catalytic dom 91.2 0.093 2E-06 41.2 1.0 31 5-35 243-273 (307)
188 cd05587 STKc_cPKC Catalytic do 91.2 0.07 1.5E-06 42.3 0.3 34 2-35 225-263 (324)
189 KOG0592 3-phosphoinositide-dep 91.1 0.097 2.1E-06 44.1 1.1 34 2-35 311-344 (604)
190 KOG4578 Uncharacterized conser 91.1 0.12 2.7E-06 40.6 1.5 63 82-147 335-400 (421)
191 PLN02952 phosphoinositide phos 91.0 3.2 7E-05 36.1 10.0 66 55-126 12-84 (599)
192 cd05600 STKc_Sid2p_Dbf2p Catal 91.0 0.094 2E-06 41.7 0.8 34 2-35 230-263 (333)
193 cd05584 STKc_p70S6K Catalytic 90.9 0.085 1.8E-06 41.8 0.6 34 2-35 224-262 (323)
194 cd05573 STKc_ROCK_NDR_like Cat 90.9 0.093 2E-06 41.9 0.7 34 2-36 258-292 (350)
195 KOG3866 DNA-binding protein of 90.8 0.54 1.2E-05 36.8 4.8 79 94-179 256-351 (442)
196 KOG0600 Cdc2-related protein k 90.5 0.12 2.7E-06 43.1 1.1 32 1-32 372-403 (560)
197 PF05517 p25-alpha: p25-alpha 90.4 0.69 1.5E-05 32.8 4.8 66 80-147 2-71 (154)
198 cd05610 STKc_MASTL Catalytic d 90.1 0.12 2.7E-06 45.5 0.9 32 4-35 609-640 (669)
199 cd05589 STKc_PKN Catalytic dom 89.5 0.14 3E-06 40.7 0.6 34 2-35 225-263 (324)
200 cd05580 STKc_PKA Catalytic dom 89.4 0.13 2.8E-06 39.9 0.4 34 3-36 223-261 (290)
201 KOG0593 Predicted protein kina 89.3 0.18 4E-06 39.7 1.2 30 5-34 260-289 (396)
202 cd05582 STKc_RSK_N N-terminal 89.3 0.13 2.8E-06 40.6 0.4 34 2-35 222-260 (318)
203 KOG0658 Glycogen synthase kina 89.3 0.17 3.7E-06 40.5 1.0 35 1-35 278-312 (364)
204 cd05599 STKc_NDR_like Catalyti 89.0 0.15 3.2E-06 41.1 0.5 33 2-35 267-302 (364)
205 KOG0582 Ste20-like serine/thre 88.9 0.23 5E-06 41.0 1.5 28 7-34 271-298 (516)
206 KOG0596 Dual specificity; seri 88.7 0.23 5E-06 42.1 1.5 43 5-47 603-645 (677)
207 PLN00181 protein SPA1-RELATED; 88.3 0.21 4.5E-06 44.9 1.0 31 5-35 241-271 (793)
208 cd05604 STKc_SGK3 Catalytic do 88.0 0.18 3.8E-06 40.0 0.4 33 3-35 221-257 (325)
209 cd06635 STKc_TAO1 Catalytic do 87.7 0.26 5.7E-06 38.9 1.2 31 4-34 252-282 (317)
210 KOG1027 Serine/threonine prote 87.7 0.26 5.7E-06 43.7 1.2 29 4-32 742-770 (903)
211 KOG0169 Phosphoinositide-speci 87.5 2.5 5.4E-05 37.3 6.8 65 116-181 135-199 (746)
212 KOG4347 GTPase-activating prot 86.7 1.7 3.7E-05 37.6 5.3 50 134-183 535-584 (671)
213 cd05616 STKc_cPKC_beta Catalyt 86.5 0.24 5.2E-06 39.3 0.3 34 2-35 225-263 (323)
214 cd05621 STKc_ROCK2 Catalytic d 86.4 0.31 6.7E-06 39.6 1.0 33 2-34 275-309 (370)
215 cd05609 STKc_MAST Catalytic do 86.3 0.3 6.6E-06 38.2 0.8 36 4-39 245-283 (305)
216 KOG0605 NDR and related serine 86.2 0.22 4.7E-06 41.9 -0.1 33 2-35 416-451 (550)
217 cd05592 STKc_nPKC_theta_delta 86.0 0.28 6.1E-06 38.8 0.5 33 3-35 221-254 (316)
218 PF09068 EF-hand_2: EF hand; 85.9 5.8 0.00013 27.1 6.8 81 65-145 26-125 (127)
219 KOG4286 Dystrophin-like protei 85.6 5.6 0.00012 35.2 7.9 112 67-181 407-532 (966)
220 PTZ00283 serine/threonine prot 85.5 0.39 8.4E-06 40.8 1.1 32 3-34 271-302 (496)
221 cd05615 STKc_cPKC_alpha Cataly 85.4 0.32 6.9E-06 38.6 0.5 34 2-35 225-263 (323)
222 cd05629 STKc_NDR_like_fungal C 85.0 0.34 7.4E-06 39.3 0.5 32 3-35 277-311 (377)
223 KOG1035 eIF-2alpha kinase GCN2 84.9 0.52 1.1E-05 43.7 1.6 31 3-33 845-875 (1351)
224 cd05625 STKc_LATS1 Catalytic d 84.7 0.35 7.5E-06 39.3 0.4 34 2-36 276-312 (382)
225 cd05597 STKc_DMPK_like Catalyt 84.7 0.45 9.7E-06 37.9 1.1 33 3-35 238-272 (331)
226 cd05602 STKc_SGK1 Catalytic do 84.2 0.35 7.7E-06 38.3 0.3 34 2-35 220-257 (325)
227 cd05598 STKc_LATS Catalytic do 84.1 0.38 8.2E-06 39.0 0.5 33 3-36 273-308 (376)
228 PTZ00267 NIMA-related protein 84.1 0.48 1E-05 40.0 1.1 32 3-34 297-328 (478)
229 cd05626 STKc_LATS2 Catalytic d 83.8 0.51 1.1E-05 38.4 1.1 35 2-36 276-312 (381)
230 KOG4236 Serine/threonine prote 83.8 0.45 9.7E-06 40.5 0.7 35 2-36 792-826 (888)
231 PF07879 PHB_acc_N: PHB/PHA ac 83.5 2.3 4.9E-05 25.1 3.3 42 161-202 10-57 (64)
232 cd05627 STKc_NDR2 Catalytic do 83.4 0.47 1E-05 38.2 0.7 32 3-35 265-299 (360)
233 PF12174 RST: RCD1-SRO-TAF4 (R 83.2 2.3 5E-05 25.8 3.5 47 133-183 8-54 (70)
234 PTZ00266 NIMA-related protein 83.0 0.49 1.1E-05 43.5 0.8 32 3-34 269-300 (1021)
235 cd05623 STKc_MRCK_alpha Cataly 81.8 0.6 1.3E-05 37.2 0.8 35 2-36 237-273 (332)
236 cd05603 STKc_SGK2 Catalytic do 81.7 0.52 1.1E-05 37.3 0.3 32 4-35 222-257 (321)
237 PF05517 p25-alpha: p25-alpha 81.6 16 0.00035 25.8 9.8 82 120-203 2-88 (154)
238 PF09682 Holin_LLH: Phage holi 81.2 7.4 0.00016 25.7 5.7 47 158-204 55-101 (108)
239 KOG2243 Ca2+ release channel ( 81.0 3.1 6.7E-05 39.6 4.8 55 87-143 4064-4118(5019)
240 PF00404 Dockerin_1: Dockerin 80.7 2.1 4.5E-05 19.3 2.0 16 164-179 1-16 (21)
241 KOG0586 Serine/threonine prote 80.7 0.89 1.9E-05 38.9 1.4 36 1-36 278-313 (596)
242 PF09069 EF-hand_3: EF-hand; 79.4 5.6 0.00012 25.4 4.4 31 153-184 2-32 (90)
243 cd05628 STKc_NDR1 Catalytic do 79.0 0.95 2E-05 36.5 1.0 35 2-36 264-300 (363)
244 PF14513 DAG_kinase_N: Diacylg 78.6 3.2 7E-05 28.8 3.4 74 57-130 5-82 (138)
245 KOG0597 Serine-threonine prote 77.3 0.97 2.1E-05 38.9 0.6 31 4-34 225-256 (808)
246 KOG0616 cAMP-dependent protein 75.9 0.79 1.7E-05 36.1 -0.2 35 2-36 265-304 (355)
247 PF01023 S_100: S-100/ICaBP ty 75.9 6.9 0.00015 21.2 3.6 33 78-110 4-36 (44)
248 PF08414 NADPH_Ox: Respiratory 75.1 5.8 0.00013 25.7 3.6 62 79-146 29-93 (100)
249 KOG4717 Serine/threonine prote 75.0 1.1 2.4E-05 38.1 0.4 30 5-34 246-275 (864)
250 cd05622 STKc_ROCK1 Catalytic d 75.0 1.3 2.9E-05 35.9 0.9 35 2-36 275-311 (371)
251 KOG1265 Phospholipase C [Lipid 74.9 54 0.0012 30.2 10.3 82 60-147 205-301 (1189)
252 KOG0039 Ferric reductase, NADH 74.7 8.6 0.00019 34.0 5.7 47 131-185 2-48 (646)
253 KOG1955 Ral-GTPase effector RA 74.3 7.8 0.00017 32.7 5.0 63 42-109 230-292 (737)
254 KOG2243 Ca2+ release channel ( 74.2 3.9 8.5E-05 38.9 3.6 38 158-200 4061-4098(5019)
255 PF11848 DUF3368: Domain of un 72.7 10 0.00022 20.9 3.9 34 167-203 14-47 (48)
256 KOG0598 Ribosomal protein S6 k 72.6 1.5 3.4E-05 35.2 0.7 36 2-37 250-289 (357)
257 PF04558 tRNA_synt_1c_R1: Glut 72.5 2.8 6E-05 30.1 1.9 49 151-204 82-130 (164)
258 KOG1707 Predicted Ras related/ 71.3 11 0.00023 32.7 5.2 47 154-203 195-241 (625)
259 TIGR01848 PHA_reg_PhaR polyhyd 70.5 6.7 0.00015 25.8 3.1 65 125-201 11-76 (107)
260 KOG0201 Serine/threonine prote 70.5 2.5 5.5E-05 35.0 1.5 29 6-34 240-268 (467)
261 KOG4403 Cell surface glycoprot 69.8 17 0.00037 30.1 5.9 75 119-200 70-144 (575)
262 KOG4279 Serine/threonine prote 66.9 2.1 4.6E-05 37.9 0.4 32 2-33 805-836 (1226)
263 KOG0998 Synaptic vesicle prote 65.8 2.6 5.6E-05 38.4 0.7 60 119-181 285-344 (847)
264 cd05624 STKc_MRCK_beta Catalyt 65.5 2.8 6E-05 33.3 0.8 34 2-35 237-272 (331)
265 KOG0589 Serine/threonine prote 65.0 3.9 8.5E-05 34.0 1.6 33 2-34 230-263 (426)
266 PF08414 NADPH_Ox: Respiratory 64.3 23 0.0005 23.0 4.6 58 119-183 32-93 (100)
267 KOG3866 DNA-binding protein of 64.2 24 0.00052 28.1 5.5 47 156-202 246-293 (442)
268 KOG0986 G protein-coupled rece 63.9 2.6 5.7E-05 35.3 0.3 34 2-35 413-452 (591)
269 KOG0574 STE20-like serine/thre 63.5 2.5 5.4E-05 33.5 0.2 33 3-35 257-289 (502)
270 PLN02228 Phosphoinositide phos 63.4 54 0.0012 28.6 8.0 62 117-180 24-90 (567)
271 PF14164 YqzH: YqzH-like prote 63.4 29 0.00063 20.6 5.7 49 154-203 8-57 (64)
272 KOG2871 Uncharacterized conser 61.6 9.3 0.0002 31.0 3.0 31 152-182 307-337 (449)
273 KOG4004 Matricellular protein 60.2 3.9 8.4E-05 30.1 0.6 59 119-180 189-248 (259)
274 KOG0998 Synaptic vesicle prote 60.1 6.2 0.00013 36.0 2.0 72 73-147 276-347 (847)
275 KOG4004 Matricellular protein 60.0 4.2 9.2E-05 29.9 0.8 59 85-146 192-251 (259)
276 PF03979 Sigma70_r1_1: Sigma-7 59.9 18 0.00039 22.5 3.6 29 168-202 19-47 (82)
277 KOG0035 Ca2+-binding actin-bun 58.9 52 0.0011 30.2 7.3 64 119-182 749-816 (890)
278 TIGR01673 holin_LLH phage holi 58.2 52 0.0011 21.8 5.8 48 157-204 53-101 (108)
279 PF09069 EF-hand_3: EF-hand; 58.1 47 0.001 21.2 6.2 28 152-181 47-74 (90)
280 KOG0694 Serine/threonine prote 56.6 5.2 0.00011 35.1 0.9 36 1-36 591-631 (694)
281 KOG1151 Tousled-like protein k 56.3 3.9 8.6E-05 34.3 0.2 34 1-34 713-746 (775)
282 KOG0664 Nemo-like MAPK-related 54.8 6.2 0.00013 31.0 1.0 30 5-34 319-348 (449)
283 cd07313 terB_like_2 tellurium 54.3 56 0.0012 20.9 6.2 58 119-178 39-96 (104)
284 KOG0611 Predicted serine/threo 53.6 7.7 0.00017 32.2 1.4 32 2-33 276-307 (668)
285 PF09943 DUF2175: Uncharacteri 51.9 20 0.00043 23.4 2.8 62 130-203 22-83 (101)
286 cd06404 PB1_aPKC PB1 domain is 51.8 35 0.00077 21.4 3.8 21 152-172 57-77 (83)
287 PLN02222 phosphoinositide phos 51.5 64 0.0014 28.3 6.6 50 96-145 37-90 (581)
288 KOG0690 Serine/threonine prote 51.2 11 0.00025 30.4 1.9 35 2-36 392-431 (516)
289 PF11116 DUF2624: Protein of u 50.3 43 0.00094 21.1 4.0 28 170-201 14-41 (85)
290 KOG0042 Glycerol-3-phosphate d 50.2 28 0.00062 30.1 4.2 45 155-203 594-638 (680)
291 KOG3449 60S acidic ribosomal p 49.9 71 0.0015 21.2 5.1 44 156-203 3-46 (112)
292 cd05100 PTKc_FGFR3 Catalytic d 49.4 10 0.00022 30.1 1.5 27 3-29 263-289 (334)
293 KOG2871 Uncharacterized conser 49.1 23 0.0005 28.9 3.3 63 116-178 308-370 (449)
294 PF12631 GTPase_Cys_C: Catalyt 48.7 34 0.00073 20.7 3.4 47 155-201 24-70 (73)
295 PLN02859 glutamine-tRNA ligase 47.1 83 0.0018 28.7 6.7 50 150-204 83-132 (788)
296 PF03672 UPF0154: Uncharacteri 46.4 53 0.0012 19.5 3.8 32 168-203 29-60 (64)
297 PF07553 Lipoprotein_Ltp: Host 46.2 49 0.0011 18.3 3.5 32 168-202 16-47 (48)
298 PF12486 DUF3702: ImpA domain 45.2 65 0.0014 22.7 4.8 21 123-143 75-95 (148)
299 PLN02222 phosphoinositide phos 44.5 97 0.0021 27.2 6.6 14 96-109 76-89 (581)
300 PF01885 PTS_2-RNA: RNA 2'-pho 44.1 41 0.00089 24.7 3.8 35 164-202 26-60 (186)
301 PRK00523 hypothetical protein; 43.7 58 0.0013 19.8 3.7 42 157-203 27-68 (72)
302 PF02885 Glycos_trans_3N: Glyc 43.4 49 0.0011 19.5 3.5 16 169-184 13-28 (66)
303 PLN02228 Phosphoinositide phos 43.0 1.4E+02 0.003 26.2 7.3 65 75-146 22-93 (567)
304 PLN02230 phosphoinositide phos 42.2 1.7E+02 0.0038 25.8 7.8 29 118-147 30-58 (598)
305 PF08976 DUF1880: Domain of un 41.7 27 0.00059 23.4 2.3 30 117-146 7-36 (118)
306 KOG0039 Ferric reductase, NADH 41.7 63 0.0014 28.7 5.3 80 96-181 2-88 (646)
307 KOG4301 Beta-dystrobrevin [Cyt 41.0 63 0.0014 26.1 4.6 64 119-184 112-175 (434)
308 KOG1954 Endocytosis/signaling 41.0 58 0.0013 27.0 4.4 25 153-177 476-500 (532)
309 PTZ00373 60S Acidic ribosomal 40.8 1.1E+02 0.0024 20.5 5.2 43 156-202 5-47 (112)
310 PF10892 DUF2688: Protein of u 40.7 50 0.0011 18.9 2.9 31 171-204 28-58 (60)
311 PF12767 SAGA-Tad1: Transcript 40.4 64 0.0014 24.8 4.6 69 131-203 6-74 (252)
312 KOG4403 Cell surface glycoprot 39.8 24 0.00052 29.3 2.2 56 129-184 40-98 (575)
313 PF08708 PriCT_1: Primase C te 39.1 84 0.0018 18.6 4.4 17 188-204 50-66 (71)
314 KOG0584 Serine/threonine prote 38.1 16 0.00034 31.9 1.0 31 3-34 271-301 (632)
315 PF09851 SHOCT: Short C-termin 37.6 55 0.0012 16.1 3.6 25 155-182 4-28 (31)
316 PRK00819 RNA 2'-phosphotransfe 37.5 74 0.0016 23.2 4.2 34 164-201 27-60 (179)
317 KOG0983 Mitogen-activated prot 37.4 17 0.00038 28.7 1.0 28 7-34 327-354 (391)
318 COG3763 Uncharacterized protei 36.8 85 0.0019 19.0 3.6 42 157-203 26-67 (71)
319 TIGR01848 PHA_reg_PhaR polyhyd 36.6 1.3E+02 0.0027 19.9 4.9 38 95-141 16-53 (107)
320 PF14069 SpoVIF: Stage VI spor 36.5 1.1E+02 0.0023 19.1 4.6 33 172-204 29-61 (79)
321 cd05108 PTKc_EGFR Catalytic do 36.4 20 0.00042 28.1 1.3 26 4-29 239-264 (316)
322 PRK01844 hypothetical protein; 35.9 92 0.002 19.0 3.7 42 157-203 26-67 (72)
323 KOG2419 Phosphatidylserine dec 35.8 54 0.0012 29.0 3.7 64 119-182 439-533 (975)
324 KOG2557 Uncharacterized conser 35.6 1.3E+02 0.0027 24.8 5.5 65 120-185 60-125 (427)
325 PF12674 Zn_ribbon_2: Putative 34.9 1.1E+02 0.0025 19.0 4.5 31 171-202 42-72 (81)
326 PF02761 Cbl_N2: CBL proto-onc 34.4 1.2E+02 0.0026 19.1 4.6 47 98-144 22-69 (85)
327 cd07316 terB_like_DjlA N-termi 34.0 1.3E+02 0.0027 19.2 8.3 79 95-177 12-96 (106)
328 COG4086 Predicted secreted pro 33.9 1E+02 0.0022 24.2 4.6 34 171-204 210-243 (299)
329 PF09873 DUF2100: Uncharacteri 33.9 1.1E+02 0.0025 22.8 4.7 17 131-147 39-55 (215)
330 PF04157 EAP30: EAP30/Vps36 fa 33.3 85 0.0018 23.6 4.2 99 95-203 110-214 (223)
331 PF13720 Acetyltransf_11: Udp 33.2 1.2E+02 0.0027 18.8 5.2 56 71-132 25-80 (83)
332 PF11363 DUF3164: Protein of u 32.9 2E+02 0.0044 21.3 6.4 43 153-202 118-160 (195)
333 PF09061 Stirrup: Stirrup; In 32.5 1.1E+02 0.0024 18.1 3.9 31 168-202 47-77 (79)
334 KOG0587 Traf2- and Nck-interac 32.3 28 0.00061 31.8 1.6 37 6-42 259-295 (953)
335 PF10668 Phage_terminase: Phag 31.8 69 0.0015 18.7 2.7 25 155-180 8-32 (60)
336 PF06207 DUF1002: Protein of u 31.0 1.2E+02 0.0026 23.0 4.6 32 172-203 173-204 (225)
337 COG2926 Uncharacterized protei 30.6 92 0.002 20.0 3.3 15 189-203 54-68 (109)
338 PRK14981 DNA-directed RNA poly 30.6 1.1E+02 0.0023 20.4 3.9 40 137-181 66-105 (112)
339 PF11460 DUF3007: Protein of u 30.5 95 0.0021 20.4 3.4 25 171-203 78-102 (104)
340 PLN02223 phosphoinositide phos 30.5 2.3E+02 0.005 24.7 6.6 48 154-202 16-64 (537)
341 KOG4070 Putative signal transd 30.3 1.1E+02 0.0024 21.7 3.9 68 79-147 14-87 (180)
342 cd05833 Ribosomal_P2 Ribosomal 30.2 1.7E+02 0.0036 19.4 5.2 41 157-201 4-44 (109)
343 PF05099 TerB: Tellurite resis 30.0 65 0.0014 21.8 2.9 98 95-197 36-136 (140)
344 PLN02230 phosphoinositide phos 29.9 2E+02 0.0043 25.5 6.2 50 151-203 26-76 (598)
345 PF08672 APC2: Anaphase promot 29.8 1.2E+02 0.0026 17.6 3.9 30 152-182 13-44 (60)
346 PF04282 DUF438: Family of unk 29.3 1.4E+02 0.003 18.2 7.1 52 142-201 5-56 (71)
347 smart00874 B5 tRNA synthetase 28.3 98 0.0021 18.2 3.2 11 171-181 19-29 (71)
348 PF09164 VitD-bind_III: Vitami 28.2 1.4E+02 0.003 17.8 4.2 32 171-202 9-40 (68)
349 TIGR00135 gatC glutamyl-tRNA(G 28.1 1.4E+02 0.0031 18.8 4.1 28 171-202 1-28 (93)
350 PF09832 DUF2059: Uncharacteri 28.0 1.3E+02 0.0028 17.3 3.8 13 189-201 15-27 (64)
351 PF14821 Thr_synth_N: Threonin 28.0 1.5E+02 0.0033 18.2 4.3 17 188-204 63-79 (79)
352 smart00845 GatB_Yqey GatB doma 27.9 2.1E+02 0.0046 19.8 8.0 30 134-163 39-68 (147)
353 PF01325 Fe_dep_repress: Iron 27.7 1.3E+02 0.0028 17.3 4.7 41 152-203 6-46 (60)
354 KOG1240 Protein kinase contain 26.7 37 0.00079 32.3 1.4 27 3-29 265-291 (1431)
355 cd00171 Sec7 Sec7 domain; Doma 26.6 1.5E+02 0.0032 21.7 4.4 41 162-204 141-181 (185)
356 cd07176 terB tellurite resista 26.4 1.8E+02 0.0039 18.5 4.8 42 134-177 59-100 (111)
357 KOG0612 Rho-associated, coiled 26.3 29 0.00063 32.8 0.7 33 1-34 308-343 (1317)
358 PF09373 PMBR: Pseudomurein-bi 26.2 79 0.0017 15.8 2.1 13 132-144 3-15 (33)
359 PF06226 DUF1007: Protein of u 25.9 84 0.0018 23.5 3.0 28 159-186 55-82 (212)
360 cd05110 PTKc_HER4 Catalytic do 25.2 43 0.00093 26.0 1.5 26 4-29 239-264 (303)
361 PF02337 Gag_p10: Retroviral G 24.7 1.9E+02 0.0041 18.5 4.0 30 174-203 8-37 (90)
362 PF02637 GatB_Yqey: GatB domai 23.7 2.5E+02 0.0055 19.4 5.0 31 133-163 39-69 (148)
363 PRK13696 hypothetical protein; 23.7 1.7E+02 0.0036 17.3 4.0 23 121-144 11-33 (62)
364 PF09336 Vps4_C: Vps4 C termin 23.7 1.6E+02 0.0034 17.2 3.3 26 170-199 29-54 (62)
365 PF06384 ICAT: Beta-catenin-in 23.6 1.3E+02 0.0028 18.7 3.0 17 185-201 27-43 (78)
366 TIGR00134 gatE_arch glutamyl-t 23.3 3E+02 0.0065 24.5 6.2 16 189-204 559-574 (620)
367 PRK00034 gatC aspartyl/glutamy 23.2 2E+02 0.0043 18.2 4.1 28 171-202 3-30 (95)
368 PHA02105 hypothetical protein 22.9 81 0.0018 18.2 1.9 48 98-145 4-57 (68)
369 COG5296 Transcription factor i 22.9 3.4E+02 0.0075 22.6 6.0 50 153-202 303-352 (521)
370 PF07128 DUF1380: Protein of u 22.4 1.7E+02 0.0037 20.4 3.7 13 171-183 43-55 (139)
371 COG3860 Uncharacterized protei 22.1 1.3E+02 0.0029 18.8 2.8 19 186-204 42-60 (89)
372 KOG1989 ARK protein kinase fam 22.1 49 0.0011 29.9 1.3 29 4-32 282-310 (738)
373 PF06569 DUF1128: Protein of u 22.0 2E+02 0.0043 17.5 3.9 15 188-202 51-65 (71)
374 PF09012 FeoC: FeoC like trans 21.8 1E+02 0.0022 18.1 2.4 27 168-203 12-38 (69)
375 PHA03155 hypothetical protein; 21.8 1.3E+02 0.0027 20.2 2.8 98 98-199 7-104 (115)
376 smart00222 Sec7 Sec7 domain. D 21.5 2.2E+02 0.0048 20.7 4.5 40 163-204 144-183 (187)
377 COG2511 GatE Archaeal Glu-tRNA 21.4 3.6E+02 0.0077 23.6 6.0 50 152-204 521-582 (631)
378 KOG0576 Mitogen-activated prot 21.2 43 0.00093 29.9 0.8 28 8-35 250-277 (829)
379 KOG2351 RNA polymerase II, fou 21.1 1E+02 0.0022 21.0 2.3 19 185-203 109-127 (134)
380 PF06648 DUF1160: Protein of u 21.0 2.8E+02 0.0061 18.9 5.7 70 119-200 39-108 (122)
381 KOG2438 Glutamyl-tRNA amidotra 20.7 2.5E+02 0.0053 23.8 4.9 68 132-205 391-458 (505)
382 COG5562 Phage envelope protein 20.5 81 0.0018 21.8 1.8 26 120-145 75-100 (137)
383 PF11829 DUF3349: Protein of u 20.1 2.6E+02 0.0057 18.1 5.3 65 134-202 20-84 (96)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=136.14 Aligned_cols=129 Identities=23% Similarity=0.440 Sum_probs=117.1
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 68 LAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 68 l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
+...+.++.++++++++.|..+|+ +++|.|++.+|..+++..+.. .+..+.++|..+|. +.|.|+|.+|+.++...
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~--d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDR--DSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCc--CCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 334478999999999999999999 799999999999999876665 35568999999999 89999999999999998
Q ss_pred CCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 147 HPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 147 ~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
......+++++.+|+.||+||+|+|+..+|+.+++ .+|+++++++++.|++.+
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~----~lge~~~deev~~ll~~~ 137 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK----SLGERLSDEEVEKLLKEY 137 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH----hhcccCCHHHHHHHHHhc
Confidence 87778899999999999999999999999999987 689999999999999865
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=4.1e-19 Score=125.97 Aligned_cols=124 Identities=25% Similarity=0.361 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC-hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCh
Q 028692 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE-NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPI 152 (205)
Q Consensus 74 ~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~ 152 (205)
++..++..+..+|..+|. +++|+|+..+|..++..++... ...+..++..+|.+++|.|++.||+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~--d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDK--DGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCC--CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 356778888899999998 7999999999999998766653 4558999999999999999999999999877643333
Q ss_pred ----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 153 ----EDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 153 ----~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.+.++.+|+.||.||+|+|+.+||+++|. .+|.++++++++.|++.+
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~----~lg~~~~~~e~~~mi~~~ 130 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLT----SLGEKLTDEECKEMIREV 130 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHH----HhCCcCCHHHHHHHHHhc
Confidence 45999999999999999999999999976 689999999999999864
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=8.8e-19 Score=120.05 Aligned_cols=126 Identities=25% Similarity=0.352 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC-hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE-NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA 150 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~ 150 (205)
..+++.+-+.+...|..+++ +++|+|+.+||..++...++.. +..+..+...+|.++.|.|+|++|+..++......
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~--~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDP--DMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred ccccHHHHhhHHHHHHhhcc--CCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 45567777778888888887 7999999999999998877764 44588899999999999999999999988876677
Q ss_pred ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 151 PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 151 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.+.++++.+|+.+|.|++|.|+..+|+.+.+ .+|+++|++++.+||+++
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvak----eLgenltD~El~eMIeEA 151 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAK----ELGENLTDEELMEMIEEA 151 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHH----HhCccccHHHHHHHHHHh
Confidence 7999999999999999999999999999977 689999999999999875
No 4
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.80 E-value=7.5e-18 Score=121.74 Aligned_cols=135 Identities=42% Similarity=0.641 Sum_probs=116.3
Q ss_pred HHHHHHHhhCC----CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCc-ccHH
Q 028692 63 GDLARLAAESR----FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGV-IDFE 137 (205)
Q Consensus 63 ~~~~~l~~~~~----~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~-I~~~ 137 (205)
++...+...+. ++..||..++.+|.+++++ +++|+++.+||..+.. ...++...+|++.++.+++|. |+|+
T Consensus 12 ~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~-~~~g~lt~eef~~i~~---~~~Np~~~rI~~~f~~~~~~~~v~F~ 87 (187)
T KOG0034|consen 12 EDLEELQMYTGDPTQFSANEIERLYERFKKLDRN-NGDGYLTKEEFLSIPE---LALNPLADRIIDRFDTDGNGDPVDFE 87 (187)
T ss_pred hhhHHHHhccCCCcccCHHHHHHHHHHHHHhccc-cccCccCHHHHHHHHH---HhcCcHHHHHHHHHhccCCCCccCHH
Confidence 44555555566 9999999999999999993 2899999999999873 566788899999999999888 9999
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHh
Q 028692 138 EFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLP--DDLLEAIIDKML 204 (205)
Q Consensus 138 eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~--~~e~~~~~~~~~ 204 (205)
+|+.++..+.......++++.||+.||.+++|+|+.+|+.+++..++ |...+ ++.+++|++.++
T Consensus 88 ~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~---~~~~~~~~e~~~~i~d~t~ 153 (187)
T KOG0034|consen 88 EFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV---GENDDMSDEQLEDIVDKTF 153 (187)
T ss_pred HHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH---ccCCcchHHHHHHHHHHHH
Confidence 99999999996666777999999999999999999999999998754 34444 899999998875
No 5
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-16 Score=115.79 Aligned_cols=128 Identities=32% Similarity=0.542 Sum_probs=112.5
Q ss_pred CCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCC-CCC-hHHHHHHHHHhcCCCCCcc
Q 028692 57 KCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAP-YGE-NLFLDRVFDLFDEKKNGVI 134 (205)
Q Consensus 57 ~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~-~~~~~~if~~~d~~~~g~I 134 (205)
..++..+.+..+...+.++..++...+.-|.... .+|.++.++|+.++.... .+. ...+..+|+.+|.|++|.|
T Consensus 6 ~~~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i 81 (193)
T KOG0044|consen 6 NSKLQPESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTI 81 (193)
T ss_pred cccCCcHHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCc
Confidence 3455777788888889999999999999998764 589999999999987643 333 4448999999999999999
Q ss_pred cHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCC
Q 028692 135 DFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEI 189 (205)
Q Consensus 135 ~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~ 189 (205)
+|.||+.+++... .+..+++++-+|++||.||+|+|+++|+..++++++...|.
T Consensus 82 ~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 82 DFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred CHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 9999999999998 78899999999999999999999999999999999988774
No 6
>PTZ00183 centrin; Provisional
Probab=99.74 E-value=1.8e-16 Score=113.10 Aligned_cols=126 Identities=24% Similarity=0.353 Sum_probs=107.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA 150 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~ 150 (205)
..+++.++.++...|..+|+ +++|+|+..+|..++...+.. ....+..+|..+|.+++|.|+|.||..++.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~--~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDT--DGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 45788899999999999998 699999999999999866543 344589999999999999999999999887654345
Q ss_pred ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 151 PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 151 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
...+.++.+|+.+|.+++|.|+.+||..++. ..|..+++++++.++...
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~----~~~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAK----ELGETITDEELQEMIDEA 135 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH----HhCCCCCHHHHHHHHHHh
Confidence 5677899999999999999999999999976 467889999999988653
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.73 E-value=3.7e-16 Score=110.29 Aligned_cols=126 Identities=21% Similarity=0.364 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA 150 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~ 150 (205)
..+++.++..+...|..+|. +++|.|+.++|..++...+.. ....+..+|..+|.+++|.|+|++|+.++.......
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~--~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDK--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CccCHHHHHHHHHHHHHHcC--CCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 34678888899999999999 799999999999988765443 345689999999999999999999999988765345
Q ss_pred ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 151 PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 151 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.....++.+|+.+|.+++|.|+.+||..+++ ..|..++.++++.++..+
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~----~~~~~~~~~~~~~~~~~~ 129 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMT----NLGEKLTDEEVDEMIREA 129 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHH----HHCCCCCHHHHHHHHHhc
Confidence 5667899999999999999999999999986 357778999999988754
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.70 E-value=9.7e-16 Score=104.47 Aligned_cols=122 Identities=19% Similarity=0.299 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC-hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE-NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA 150 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~ 150 (205)
..|+..+|+++.+.|..+|+ |+||.|+.++++..+..++... +..+..++.. ..|.|+|.-|+.++.......
T Consensus 24 amf~q~QIqEfKEAF~~mDq--nrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQ--NRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhc--cCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCC
Confidence 35688999999999999999 7999999999999998766543 3335555554 578999999999999877567
Q ss_pred ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 151 PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 151 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.+++.+..||+.||.+++|.|..+.|+.+|. ..|.+++++||++|.+.+
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Lt----t~gDr~~~eEV~~m~r~~ 146 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLT----TMGDRFTDEEVDEMYREA 146 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHH----HhcccCCHHHHHHHHHhC
Confidence 8899999999999999999999999999975 689999999999998864
No 9
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.58 E-value=3.5e-14 Score=95.34 Aligned_cols=122 Identities=18% Similarity=0.259 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC-hHHHHHHHHHhcCC--CCCcccHHHHHHHHHhhCCCC
Q 028692 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE-NLFLDRVFDLFDEK--KNGVIDFEEFVHALNVFHPYA 150 (205)
Q Consensus 74 ~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~if~~~d~~--~~g~I~~~eF~~~~~~~~~~~ 150 (205)
+++++..+++++|..+|. .++|.|+..+...+|+.++..+ +..+.+....++.+ +--+|+|++|+.++..+.+++
T Consensus 5 ~~~d~~~e~ke~F~lfD~--~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDR--TGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhc--cCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 456667788888888888 5999999999999998766654 44477778777766 446899999999988876433
Q ss_pred --ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 028692 151 --PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID 201 (205)
Q Consensus 151 --~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~ 201 (205)
...+......+.||++++|.|...||+++|. ++|++++++|++.++.
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLt----tlGekl~eeEVe~Lla 131 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLT----TLGEKLTEEEVEELLA 131 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHH----HHHhhccHHHHHHHHc
Confidence 3567888899999999999999999999965 7899999999999875
No 10
>PLN02964 phosphatidylserine decarboxylase
Probab=99.57 E-value=9.5e-14 Score=117.05 Aligned_cols=139 Identities=19% Similarity=0.263 Sum_probs=111.6
Q ss_pred CCCCCHHHHHHHHhh--CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCC-CC----hHHHHHHHHHhcCC
Q 028692 57 KCRFDVGDLARLAAE--SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY-GE----NLFLDRVFDLFDEK 129 (205)
Q Consensus 57 ~~~l~~~~~~~l~~~--~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~----~~~~~~if~~~d~~ 129 (205)
..+++++.+..+... ..++..++.++.+.|+.+|+ +++|++ +..++...+. .. ...++.+|..+|.+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~--dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D 191 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDP--SSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYD 191 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCC--CCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC
Confidence 446788888888777 78999999999999999999 799987 5555554442 22 12378999999999
Q ss_pred CCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH---------HhhcCCCCCH-HHHHHH
Q 028692 130 KNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAI---------LMESEIKLPD-DLLEAI 199 (205)
Q Consensus 130 ~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~---------~~~~g~~l~~-~e~~~~ 199 (205)
++|.|+|+||+.++..+. ....+++++.+|+.+|.|++|+|+.+||.+++... .+-+|+.++. +++..|
T Consensus 192 gdG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~i 270 (644)
T PLN02964 192 EDGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAM 270 (644)
T ss_pred CCCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHH
Confidence 999999999999998765 55678899999999999999999999999998751 1225666777 777777
Q ss_pred HHH
Q 028692 200 IDK 202 (205)
Q Consensus 200 ~~~ 202 (205)
+.-
T Consensus 271 iH~ 273 (644)
T PLN02964 271 IHM 273 (644)
T ss_pred HHH
Confidence 743
No 11
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.56 E-value=1.3e-13 Score=99.69 Aligned_cols=111 Identities=23% Similarity=0.393 Sum_probs=96.6
Q ss_pred HHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC--ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHH
Q 028692 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG--ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKID 157 (205)
Q Consensus 80 ~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~ 157 (205)
..+...|...|. +++|.|+-+|+..+|...... ...+|+.++..||.+.+|+|++.||..+|..+. .++
T Consensus 57 ~~~~~~f~~vD~--d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~Wr 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDR--DRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QWR 127 (221)
T ss_pred HHHHHHHHhhCc--cccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HHH
Confidence 356678888888 799999999999998632221 245699999999999999999999999998886 799
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 158 FAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 158 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.+|+.||.|++|.|+..||+++|. .+|..|+++.++-++++.
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~----~~Gy~Lspq~~~~lv~ky 169 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALT----QLGYRLSPQFYNLLVRKY 169 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHH----HcCcCCCHHHHHHHHHHh
Confidence 999999999999999999999976 689999999999988764
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.55 E-value=2.6e-13 Score=96.18 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=101.0
Q ss_pred cccccCCCCCCCCCCHHHHHHHHhhCC--CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC--C----hHH
Q 028692 47 SCFRYRPPVQKCRFDVGDLARLAAESR--FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG--E----NLF 118 (205)
Q Consensus 47 ~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~----~~~ 118 (205)
..|........+.++..++..+.+... .+..++..+.. ..|. +++|.|++.+|+.++...... . ...
T Consensus 12 ~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~---~~D~--dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 12 EAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIK---EIDL--DGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH---HhCC--CCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 334444555667777777777666533 45666655555 5555 599999999999988753322 1 236
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+.++|+.||.+++|+|+..|+..++..+. .....+.+...++..|.|++|.|++++|.+++.
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg-~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLG-EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhC-CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 89999999999999999999999999998 567789999999999999999999999999864
No 13
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.52 E-value=5.9e-13 Score=93.33 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=111.2
Q ss_pred HHHHHHhhcccccCCCCCCCCCCHHHHHHHHhh--CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCC--CC
Q 028692 39 EAVVITVASCFRYRPPVQKCRFDVGDLARLAAE--SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAP--YG 114 (205)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~--~~ 114 (205)
..-.+.+.++|....+.+.+.++..++..+.+. ...+..++..+...++. |.|.|++.+|..+|.... ..
T Consensus 16 ~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~------~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 16 EEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA------GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred HHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC------CCCccCHHHHHHHHHHHhccCC
Confidence 334456666677778888999999999988765 34577777777665543 568999999999986533 23
Q ss_pred ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 115 ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 115 ~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
....+.+.|+.||.|++|+|+..++..++..+. ....++++..+++.+|.|++|.|++++|.+.+.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLG-ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 355689999999999999999999999999877 678899999999999999999999999999864
No 14
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.52 E-value=4e-13 Score=90.99 Aligned_cols=144 Identities=21% Similarity=0.409 Sum_probs=115.0
Q ss_pred CCCCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccc---------cCCCCCHHHHHHHHhcCCCCChHHHHHHHHH
Q 028692 55 VQKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSII---------KDGLIHKEELQVALFQAPYGENLFLDRVFDL 125 (205)
Q Consensus 55 ~~~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~---------~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~ 125 (205)
++.+..+.+++.....++-++..+|-.++..|..+.++.- ..-.+..+.+...- -+..+|.-++|...
T Consensus 3 NK~~vFT~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMP---ELkenpfk~ri~e~ 79 (189)
T KOG0038|consen 3 NKQTVFTEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMP---ELKENPFKRRICEV 79 (189)
T ss_pred CccceeeHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhCh---hhhcChHHHHHHHH
Confidence 4556678888888888999999999999999998876110 01134444433321 14567778999999
Q ss_pred hcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 126 FDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 126 ~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
|..+|.|.++|++|+.+++.++...+.+-+..-||+.||-|++++|..+++.+++..+. ...++++|++.++++++
T Consensus 80 FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT---r~eLs~eEv~~i~ekvi 155 (189)
T KOG0038|consen 80 FSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT---RDELSDEEVELICEKVI 155 (189)
T ss_pred hccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh---hccCCHHHHHHHHHHHH
Confidence 99999999999999999999986666677888999999999999999999999998753 34499999999998875
No 15
>PTZ00183 centrin; Provisional
Probab=99.51 E-value=9.7e-13 Score=93.79 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=101.9
Q ss_pred HhhcccccCCCCCCCCCCHHHHHHHHhhCC--CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcC--CCCChHHH
Q 028692 44 TVASCFRYRPPVQKCRFDVGDLARLAAESR--FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQA--PYGENLFL 119 (205)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~--~~~~~~~~ 119 (205)
.+...|......+.+.++..++..+..... .+...+. .+|..+|. +++|.|++.+|..++... .......+
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~---~l~~~~d~--~~~g~i~~~eF~~~~~~~~~~~~~~~~l 92 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIK---QMIADVDK--DGSGKIDFEEFLDIMTKKLGERDPREEI 92 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH---HHHHHhCC--CCCCcEeHHHHHHHHHHHhcCCCcHHHH
Confidence 344445555677788999999988776533 4554444 45555565 599999999999876532 22234457
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 120 DRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 120 ~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+.+|..+|.+++|.|+..||..++.... .......+..+|..+|.+++|.|++++|..++.
T Consensus 93 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 8999999999999999999999998765 456678899999999999999999999999875
No 16
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=6.7e-13 Score=96.21 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCccc
Q 028692 57 KCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVID 135 (205)
Q Consensus 57 ~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~ 135 (205)
.+.++.+++..+.+......+.......+|..+|. |++|+|++.||..++.....+ ......+.|+.||.|++|.|+
T Consensus 41 ~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~--~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 41 SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDK--NKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc--cCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEc
Confidence 55678888888877654455556666777888888 799999999999988653333 344478999999999999999
Q ss_pred HHHHHHHHHhhCC----------CCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 136 FEEFVHALNVFHP----------YAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 136 ~~eF~~~~~~~~~----------~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
++|++.++..... .....+....+|+.+|.|++|.||.+||....+
T Consensus 119 ~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 119 KEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 9999998776431 122467788999999999999999999998865
No 17
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.46 E-value=1.9e-12 Score=101.69 Aligned_cols=118 Identities=21% Similarity=0.316 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC--ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCh
Q 028692 75 SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG--ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPI 152 (205)
Q Consensus 75 ~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~ 152 (205)
.++.-..+...|+.+|. +++|.++..++..++...... ....+..+|..+|.|.+|.++|+||..++..-
T Consensus 9 ~~er~~r~~~lf~~lD~--~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------ 80 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDS--KNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ 80 (463)
T ss_pred cHHHHHHHHHHHHHhcc--CCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------
Confidence 44445556777888887 699999999999988654443 33457899999999999999999999998544
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 153 EDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 153 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
+.++..+|+..|.++||.|+.+|+.+.++ .+|.++++++++.+++++.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~----~~gi~l~de~~~k~~e~~d 128 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLK----DLGIQLSDEKAAKFFEHMD 128 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHH----HhCCccCHHHHHHHHHHhc
Confidence 35899999999999999999999999977 6899999999999998874
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.45 E-value=2.3e-12 Score=93.33 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=123.5
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhh-cchHHHHHHHHHHhhcccccCCCCCCCCCCHHHHHHHHhhCCCCHHHHHHHH
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAAC-IPLIAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALS 83 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~l~ 83 (205)
..--++..-++|.+.|+++.++..+.- ....+...+.+..++..| .....+++.+.++..|-+. |..=.
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mf---d~~~~G~i~f~EF~~Lw~~-------i~~Wr 127 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMF---DRDNSGTIGFKEFKALWKY-------INQWR 127 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHh---cCCCCCccCHHHHHHHHHH-------HHHHH
Confidence 445678889999999999999988844 122345566666777767 4455777899998887642 44556
Q ss_pred HHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHH-HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHh
Q 028692 84 ELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLF-LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRL 162 (205)
Q Consensus 84 ~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~-~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~ 162 (205)
.+|..+|+ |++|.|+..||+.+|..++...++. .+.+++.||..++|.|.|.+|+.++..+. .+-++|+.
T Consensus 128 ~vF~~~D~--D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~-------~lt~~Fr~ 198 (221)
T KOG0037|consen 128 NVFRTYDR--DRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ-------RLTEAFRR 198 (221)
T ss_pred HHHHhccc--CCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH-------HHHHHHHH
Confidence 77888888 7999999999999999888775554 78999999988799999999999998886 68899999
Q ss_pred hCCCCCCccc--HHHHHHH
Q 028692 163 YDLRQTGYIE--REEVKQM 179 (205)
Q Consensus 163 ~D~~~~G~I~--~~e~~~~ 179 (205)
+|.+..|.|+ .++|.++
T Consensus 199 ~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 199 RDTAQQGSITISYDDFLQM 217 (221)
T ss_pred hccccceeEEEeHHHHHHH
Confidence 9999999765 5666554
No 19
>PTZ00184 calmodulin; Provisional
Probab=99.43 E-value=6.5e-12 Score=88.48 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=98.9
Q ss_pred hhcccccCCCCCCCCCCHHHHHHHHhhCC--CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcC-C-CCChHHHH
Q 028692 45 VASCFRYRPPVQKCRFDVGDLARLAAESR--FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQA-P-YGENLFLD 120 (205)
Q Consensus 45 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~-~-~~~~~~~~ 120 (205)
....|......+.+.++.+++..+..... .+..++ ..+|..+|. +++|.|++++|..++... . ......+.
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~--~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAEL---QDMINEVDA--DGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHH---HHHHHhcCc--CCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 33444444667788899999987765433 344444 445555665 589999999999987632 1 12234578
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 121 RVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 121 ~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
.+|..+|.+++|.|+.+||..++.... .....+.+..+|+.+|.+++|.|+.+||..++
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 999999999999999999999987764 45677889999999999999999999999876
No 20
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.6e-10 Score=83.79 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCC-CCHHHHHHHHhcCCCC-ChH-HHHHHHHHhcCCCCC
Q 028692 56 QKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGL-IHKEELQVALFQAPYG-ENL-FLDRVFDLFDEKKNG 132 (205)
Q Consensus 56 ~~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~-i~~~ef~~~l~~~~~~-~~~-~~~~if~~~d~~~~g 132 (205)
+.+.++.+++..+... .. .--. ..+++.+++ +++|. |++++|...+...... ... .++-+|+.||.+++|
T Consensus 47 ~~g~lt~eef~~i~~~-~~-Np~~---~rI~~~f~~--~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G 119 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPEL-AL-NPLA---DRIIDRFDT--DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDG 119 (187)
T ss_pred ccCccCHHHHHHHHHH-hc-CcHH---HHHHHHHhc--cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCC
Confidence 7788898888877621 11 1112 345555555 36666 9999999998754333 222 478899999999999
Q ss_pred cccHHHHHHHHHhhCCCCCh------HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 133 VIDFEEFVHALNVFHPYAPI------EDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 133 ~I~~~eF~~~~~~~~~~~~~------~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
.|+.+|+..++....+.... .+.+..+|..+|.|++|.|+++||.+++.
T Consensus 120 ~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 120 FISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred cCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 99999999999888754333 24466899999999999999999999975
No 21
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=5.2e-10 Score=77.24 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=104.5
Q ss_pred HhhcccccCCCCCCCCCCHHHHHHHHhhCCC--CHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc-CCCC-ChHHH
Q 028692 44 TVASCFRYRPPVQKCRFDVGDLARLAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYG-ENLFL 119 (205)
Q Consensus 44 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~-~~~~-~~~~~ 119 (205)
.....|.-..+...+.+...++..-....+| ...++..+..-+++ ++.|+|++++|+..+.. ++.. ....+
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk-----~~~g~i~fe~f~~~mt~k~~e~dt~eEi 108 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDK-----EGSGKITFEDFRRVMTVKLGERDTKEEI 108 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhh-----ccCceechHHHHHHHHHHHhccCcHHHH
Confidence 3334444456777888999998655555555 45666666665554 38999999999998753 2222 45568
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 120 DRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 120 ~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
...|+.+|.+.+|.|++.+|+.++..+. ....++++.....-+|.+++|.|+.+||..+++
T Consensus 109 ~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 9999999999999999999999998888 677889999999999999999999999999875
No 22
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.5e-10 Score=86.05 Aligned_cols=187 Identities=16% Similarity=0.131 Sum_probs=126.0
Q ss_pred hhhhhhhccCCCcccchhhhhhhhhcchHHHHHHHHHHhhcccccCCCCCCCCCCHHHHHHHHhhCC------C----CH
Q 028692 7 RSFLRAFDYDGSSSLTFGERICAACIPLIAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESR------F----SV 76 (205)
Q Consensus 7 ~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~------~----~~ 76 (205)
..++.+++-+.++.++..+. ..|+....... +.....+.+.....++.+.+++++......... . ..
T Consensus 80 ~~l~~~iD~~~Dgfv~~~El--~~wi~~s~k~~-v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~ 156 (325)
T KOG4223|consen 80 GKLVPKIDSDSDGFVTESEL--KAWIMQSQKKY-VVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNE 156 (325)
T ss_pred HHHHhhhcCCCCCceeHHHH--HHHHHHHHHHH-HHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcH
Confidence 35667788899999999998 67786544222 222334444455666888889887765433210 1 11
Q ss_pred ---HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC--ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCC
Q 028692 77 ---NELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG--ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAP 151 (205)
Q Consensus 77 ---~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~--~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 151 (205)
..+..=...|...|. |++|.++.+||...|..--.. ..-.+.+-+..+|.|++|+|+++||+.-+..-..+..
T Consensus 157 ~~~km~~rDe~rFk~AD~--d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ 234 (325)
T KOG4223|consen 157 EYKKMIARDEERFKAADQ--DGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEE 234 (325)
T ss_pred HHHHHHHHHHHHHhhccc--CCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCC
Confidence 112333567999999 799999999999988631111 1222788899999999999999999998766553222
Q ss_pred hH----HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 152 IE----DKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 152 ~~----~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
.. .+-.+.|..+|+|++|+++.+|+++.+- ..+......|...++-+
T Consensus 235 epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~----P~~~d~A~~EA~hL~~e 285 (325)
T KOG4223|consen 235 EPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL----PSEQDHAKAEARHLLHE 285 (325)
T ss_pred CcccccccHHHHHHHhhcCCCCccCHHHHhcccC----CCCccHHHHHHHHHhhh
Confidence 11 2334788889999999999999998862 23444556666666543
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.13 E-value=2.9e-10 Score=68.96 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC---ChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA---PIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~---~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
++++|+.+|.+++|.|+.+||..++....... ...+.+..+|+.+|.|++|.|+.+||.+++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46789999999999999999998888776321 234556677999999999999999998763
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.10 E-value=2.4e-10 Score=69.36 Aligned_cols=60 Identities=35% Similarity=0.558 Sum_probs=49.9
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC-----hHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE-----NLFLDRVFDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-----~~~~~~if~~~d~~~~g~I~~~eF~~~~ 143 (205)
+...|..+|. +++|+|+.+||..++....... ...+..+|+.+|.|++|.|+|+||..++
T Consensus 2 l~~~F~~~D~--d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDK--DGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHST--TSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcC--CccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5678888888 7999999999999998655422 2237788999999999999999999875
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.02 E-value=2.2e-09 Score=68.65 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc-CCCC-Ch-HHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 77 NELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYG-EN-LFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 77 ~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~-~~~~-~~-~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
..+..+...|+.+|.. +++|+|+..||+.++.. ++.. .. ..+..++..+|.|++|.|+|+||+.++..+.
T Consensus 5 ~ai~~l~~~F~~fd~~-~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVK-GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCC-CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3456677777777763 37888888888888876 4432 23 5688888888888888888888888776553
No 26
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.00 E-value=3.7e-09 Score=69.01 Aligned_cols=71 Identities=18% Similarity=0.401 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 74 ~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
++..++..+...|..+|. +++|+|+.+++..++...+. ....+..++..+|.+++|.|+|+||+.++....
T Consensus 4 ls~~~~~~l~~~F~~~D~--d~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDK--NQDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred CCHHHHHHHHHHHHHhCC--CCCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 467778888888888887 68888888888888876443 344578888888888888888888888776543
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.00 E-value=4e-09 Score=68.38 Aligned_cols=70 Identities=23% Similarity=0.428 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhcccccCC-CCCHHHHHHHHhc-CC-----CCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 77 NELEALSELYKNLSCSIIKDG-LIHKEELQVALFQ-AP-----YGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 77 ~~i~~l~~~f~~~d~~~~~~g-~i~~~ef~~~l~~-~~-----~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
..+..+..+|+.+|.. +|+| +|+..||+.++.. .+ ......+..+++.+|.|++|.|+|+||+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~-dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGK-EGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3456677778888742 5787 4999999998854 11 12344588999999999999999999998876654
No 28
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.94 E-value=6.5e-09 Score=66.52 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhh-cccccCC-CCCHHHHHHHHhc-----CCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 77 NELEALSELYKNLS-CSIIKDG-LIHKEELQVALFQ-----APYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 77 ~~i~~l~~~f~~~d-~~~~~~g-~i~~~ef~~~l~~-----~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
..+..+...|+.+| . +|+| +|+..||+.+|.. .+.. ....+..+++.+|.|++|.|+|+||+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~--dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGR--EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhccc--CCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34556677777776 4 5788 4888888888765 3433 23447888888888888888888887776543
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.91 E-value=1.5e-08 Score=64.87 Aligned_cols=69 Identities=16% Similarity=0.317 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhccccc-CCCCCHHHHHHHHhc---CCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 77 NELEALSELYKNLSCSIIK-DGLIHKEELQVALFQ---APYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 77 ~~i~~l~~~f~~~d~~~~~-~g~i~~~ef~~~l~~---~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
..+..+..+|++++.. +| +|+|+.+||+.++.. .+.. ....+.++++.+|.|++|.|+|+||+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~-~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGR-EGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4456677788888763 34 779999999999852 2322 35568899999999999999999998887654
No 30
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.88 E-value=8.3e-09 Score=66.00 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=57.1
Q ss_pred HHHHHHHhcC-CCCCcccHHHHHHHHHhhCCCCChH-HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 028692 119 LDRVFDLFDE-KKNGVIDFEEFVHALNVFHPYAPIE-DKIDFAFRLYDLRQTGYIEREEVKQMVAAILM 185 (205)
Q Consensus 119 ~~~if~~~d~-~~~g~I~~~eF~~~~~~~~~~~~~~-~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 185 (205)
+..+|+.||. +++|+|+..||..++....+..... ..+..+++.+|.|++|.|+++||..++..+..
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 6789999999 9999999999999998832233334 78999999999999999999999999876543
No 31
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.85 E-value=5.7e-08 Score=77.91 Aligned_cols=107 Identities=24% Similarity=0.332 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHH----HhcCCCCCcccHHHHHHHHHhhCC
Q 028692 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFD----LFDEKKNGVIDFEEFVHALNVFHP 148 (205)
Q Consensus 73 ~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~----~~d~~~~g~I~~~eF~~~~~~~~~ 148 (205)
.|+......++..|..+|+ +.+|.|+.+++...-. +......+++||. .+-...+|+|+|++|+-++.+..
T Consensus 271 ~FS~e~f~viy~kFweLD~--Dhd~lidk~~L~ry~d--~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e- 345 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDT--DHDGLIDKEDLKRYGD--HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE- 345 (493)
T ss_pred heeHHHHHHHHHHHhhhcc--ccccccCHHHHHHHhc--cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-
Confidence 3455666667778999999 7999999999987543 2334566899999 34445689999999999999988
Q ss_pred CCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 149 YAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 149 ~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
.+.....++-.|+.+|.+|+|.|+..|++-.....+
T Consensus 346 ~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 346 DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQL 381 (493)
T ss_pred cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHH
Confidence 677788899999999999999999999998877554
No 32
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.84 E-value=8.7e-08 Score=75.89 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=92.6
Q ss_pred CCCCCCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCC
Q 028692 53 PPVQKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNG 132 (205)
Q Consensus 53 ~~~~~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g 132 (205)
+..+.+.++..++.............-.....+|...|. |.+|.++++||+..+. ..+..+.++|+.+|.+.||
T Consensus 24 D~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~--~~dg~vDy~eF~~Y~~----~~E~~l~~~F~~iD~~hdG 97 (463)
T KOG0036|consen 24 DSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDA--NRDGRVDYSEFKRYLD----NKELELYRIFQSIDLEHDG 97 (463)
T ss_pred ccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhccc--CcCCcccHHHHHHHHH----HhHHHHHHHHhhhccccCC
Confidence 455666677666654333322222334455666777877 6899999999999874 2334467899999999999
Q ss_pred cccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 133 VIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 133 ~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
.|+.+|.-..+.... ....+++...+|+.+|++|++.|+.+|++..+.
T Consensus 98 ~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 98 KIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred ccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 999999998888877 567788889999999999999999999998753
No 33
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.83 E-value=2.2e-08 Score=60.62 Aligned_cols=57 Identities=32% Similarity=0.483 Sum_probs=31.9
Q ss_pred HHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 028692 85 LYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALN 144 (205)
Q Consensus 85 ~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~ 144 (205)
.|..+|+ +++|.|+.+|+..++...+. ....+..+|..+|.+++|.|+|.||+.++.
T Consensus 4 ~F~~~D~--~~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 4 IFRSLDP--DGDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHhCC--CCCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 4455555 45666666666665554332 333455666666666666666666665554
No 34
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.81 E-value=2.3e-08 Score=64.70 Aligned_cols=66 Identities=26% Similarity=0.399 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhh-cccccCCC-CCHHHHHHHHhc-CCC-----CChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 79 LEALSELYKNLS-CSIIKDGL-IHKEELQVALFQ-APY-----GENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 79 i~~l~~~f~~~d-~~~~~~g~-i~~~ef~~~l~~-~~~-----~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
+..+.+.|+.+| . +++|+ |+..||+.+|.. .+. .....++.+|..+|.+++|.|+|.+|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~--dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGK--EGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcc--cCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 455666777775 5 57884 888888887753 221 123457788888888888888888887776544
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.81 E-value=3.6e-08 Score=63.18 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHh-hhcccccCC-CCCHHHHHHHHhcCC------CCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 76 VNELEALSELYKN-LSCSIIKDG-LIHKEELQVALFQAP------YGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 76 ~~~i~~l~~~f~~-~d~~~~~~g-~i~~~ef~~~l~~~~------~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
+..+..+...|+. .|. +|+| +|+.+||+..+.... ......+..++..+|.|++|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~--dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGK--DGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhcc--CCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456677888888 444 4655 899999999887531 1223558899999999999999999999887655
No 36
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.81 E-value=4.8e-08 Score=62.51 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=57.7
Q ss_pred HHHHHHHHhc-CCCCC-cccHHHHHHHHHh----hCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 028692 118 FLDRVFDLFD-EKKNG-VIDFEEFVHALNV----FHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILM 185 (205)
Q Consensus 118 ~~~~if~~~d-~~~~g-~I~~~eF~~~~~~----~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 185 (205)
.+..+|+.|| .+++| .|+..|+..++.. +.+.....+.+..+++.+|.|++|.|+++||..++..+..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3688999998 79999 5999999999988 2324556778999999999999999999999999876543
No 37
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.78 E-value=1.4e-07 Score=84.62 Aligned_cols=118 Identities=20% Similarity=0.367 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCC--------CChHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY--------GENLFLDRVFDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~--------~~~~~~~~if~~~d~~~~g~I~~~eF~~~~ 143 (205)
.++++..+.++..+|+.+|. +.+|.++..+|..+|+..+. .+.|..++++..+|++.+|+|+..+|.++|
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDk--ek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDK--EKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhch--hhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 66899999999999999999 69999999999999976542 235679999999999999999999999999
Q ss_pred HhhCCCC-ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 144 NVFHPYA-PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 144 ~~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
......+ ...+.+..+|+.+|. |.-||+++++.+- +|.++++-.+.+|
T Consensus 2323 i~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-----------ltreqaefc~s~m 2371 (2399)
T KOG0040|consen 2323 ISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-----------LTREQAEFCMSKM 2371 (2399)
T ss_pred HhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-----------CCHHHHHHHHHHh
Confidence 8765332 355699999999998 9999999998765 5677766665554
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.77 E-value=5.4e-08 Score=62.45 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc-CCCC-----ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 76 VNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYG-----ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 76 ~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~-~~~~-----~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
+.++..+...|..+|+..+++|+|+..+|..++.. .+.. ....+..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 34556666667777661117788888888887753 2211 24457778888888888888888887776543
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.76 E-value=7.3e-08 Score=56.88 Aligned_cols=61 Identities=31% Similarity=0.430 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
+..+|..+|.+++|.|+++||..++.... .....+.+..+|..+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 35677778888888888888887777665 45566677778888888888888888877653
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.76 E-value=1e-07 Score=62.23 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH-hhcCCCCCH
Q 028692 118 FLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL-MESEIKLPD 193 (205)
Q Consensus 118 ~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~-~~~g~~l~~ 193 (205)
.+..+|..+|.+++|.|+++|+..++... +...+.+..+|..+|.+++|.|+++||..++..+- ...|..++.
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~ 84 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPA 84 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCc
Confidence 36889999999999999999999998764 34567899999999999999999999999887433 234665554
No 41
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.74 E-value=2.6e-08 Score=57.74 Aligned_cols=49 Identities=35% Similarity=0.508 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHHhhCCCC-ChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 131 NGVIDFEEFVHALNVFHPYA-PIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 131 ~g~I~~~eF~~~~~~~~~~~-~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
+|.|+.++|..++..+. .. ..++.+..+|..+|.+++|.|+.+||..++
T Consensus 2 ~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 34555555555553322 22 344445555555555555555555555444
No 42
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.73 E-value=6.1e-08 Score=65.10 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
+.+.|..+|.|++|.|+.+|+..+. ....+..+...|..+|.|++|.||.+||..++
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4555555555555555555555433 11223344455555555555555555555554
No 43
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.73 E-value=1.1e-07 Score=61.63 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=54.9
Q ss_pred HHHHHHHhc-CCCCC-cccHHHHHHHHHhhC----CCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 119 LDRVFDLFD-EKKNG-VIDFEEFVHALNVFH----PYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 119 ~~~if~~~d-~~~~g-~I~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
+.++|..|| .|++| +|+..|+..++.... ........+..+++.+|.|++|.|+++||..++..+.
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 577899999 68998 599999999986632 1233567899999999999999999999999987543
No 44
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.72 E-value=1e-07 Score=64.01 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 028692 75 SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 75 ~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~ 143 (205)
.+.....+.-.|..+|. |++|+|+.+|+..+. .......+..+|..+|.|++|.||++||..++
T Consensus 43 ~~~~~~~l~w~F~~lD~--d~DG~Ls~~EL~~~~---l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDG--NYDGKLSHHELAPIR---LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCC--CCCCcCCHHHHHHHH---ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45556677888999999 799999999999875 12334557899999999999999999999998
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.70 E-value=1.9e-08 Score=50.20 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=19.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 156 IDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 156 ~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
++.+|+.||+||+|+|+++||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 56777777777777777777777765
No 46
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.69 E-value=1.8e-07 Score=74.81 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=83.7
Q ss_pred HHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCC--C--C------
Q 028692 81 ALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHP--Y--A------ 150 (205)
Q Consensus 81 ~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~--~--~------ 150 (205)
.+...|...|. .++|+|+...++.++.......-||...--+....+.+|.+.|.+....+..-.. . .
T Consensus 465 dL~~eF~~~D~--~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 465 DLEDEFRKYDP--KKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred HHHHHHHhcCh--hhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 36677888888 5899999999999986422222234333333444466778887776554322110 0 0
Q ss_pred -ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 151 -PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 151 -~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.....+..+|+.+|.|++|.|+.+||+++++.+..++...++++++.++.+.|
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~m 596 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSM 596 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhh
Confidence 01235778899999999999999999999988888888889999998887754
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=1.4e-07 Score=61.34 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhccccc-CCCCCHHHHHHHHhc-C----CCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 028692 80 EALSELYKNLSCSIIK-DGLIHKEELQVALFQ-A----PYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNV 145 (205)
Q Consensus 80 ~~l~~~f~~~d~~~~~-~g~i~~~ef~~~l~~-~----~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~ 145 (205)
..+...|..+|.. ++ +|+|+..||+.++.. . +.. ....+..++..+|.+++|.|+|+||+.++..
T Consensus 8 ~~l~~~F~~~D~~-dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGK-DGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhcc-CCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3445555555531 24 577777777776653 1 111 2344677777777777777777777766544
No 48
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.69 E-value=1.6e-07 Score=56.81 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 028692 120 DRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 120 ~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 182 (205)
+.+|..+|.+++|.|+.+|+..++.... ...+.+..+|+.+|.+++|.|+.+||..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5789999999999999999999887653 36678999999999999999999999998764
No 49
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.69 E-value=2.1e-06 Score=59.28 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=107.8
Q ss_pred HHHHHHhhcccccCCCCCCCCCCHHHHHHHHhh--CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcC--CCC
Q 028692 39 EAVVITVASCFRYRPPVQKCRFDVGDLARLAAE--SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQA--PYG 114 (205)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~--~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~--~~~ 114 (205)
+.-.+.+..+|.....++.+.+..+.++.+... ..++++++..+.. ...|-|++.-|..++... +..
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~---------Ea~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK---------EAPGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH---------hCCCCeeHHHHHHHHHHHhcCCC
Confidence 333456677788888999999999999977654 3367777776652 267899999999988643 334
Q ss_pred ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 115 ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 115 ~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+...+...|..||.+++|.|.-+.+..++.... ..-..+++..+|+.+-.+..|.|++.+|..+++
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 455588999999999999999999999888865 677889999999999999999999999999985
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.68 E-value=1.1e-07 Score=55.09 Aligned_cols=51 Identities=35% Similarity=0.546 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHhcCCCC-C-hHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 028692 95 KDGLIHKEELQVALFQAPYG-E-NLFLDRVFDLFDEKKNGVIDFEEFVHALNV 145 (205)
Q Consensus 95 ~~g~i~~~ef~~~l~~~~~~-~-~~~~~~if~~~d~~~~g~I~~~eF~~~~~~ 145 (205)
++|.|+.++|..++..++.. . ...+..+|..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999665544 3 445999999999999999999999998853
No 51
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.67 E-value=1.8e-07 Score=60.82 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=54.4
Q ss_pred HHHHHHHhcC-CC-CCcccHHHHHHHHHhhC----CCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 028692 119 LDRVFDLFDE-KK-NGVIDFEEFVHALNVFH----PYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 119 ~~~if~~~d~-~~-~g~I~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 182 (205)
+..+|..+|. ++ +|.|+..|+..++.... ......+.+..+++.+|.+++|.|+++||.+++..
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 6789999997 87 69999999999887521 13456788999999999999999999999998764
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.67 E-value=2.2e-07 Score=60.10 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=56.2
Q ss_pred HHHHHHHHhc-CCCCC-cccHHHHHHHHHh-hC---CCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 118 FLDRVFDLFD-EKKNG-VIDFEEFVHALNV-FH---PYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 118 ~~~~if~~~d-~~~~g-~I~~~eF~~~~~~-~~---~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
.+.++|+.|| .+++| .|+..|+..++.. +. ......+.+..+|+.+|.+++|.|+++||..++..+.
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3688999997 99999 5999999999975 31 1234677899999999999999999999999987644
No 53
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.66 E-value=1.7e-07 Score=60.01 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc-CCCCC-----hHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 77 NELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYGE-----NLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 77 ~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~-~~~~~-----~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
..+..+...|+.++...+++|+|+.+||+.+|.. .+... ...+..+|..+|.+++|.|+|+||+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3466677888888763123678999999988852 22211 4557888888888888888888888877544
No 54
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.65 E-value=2.7e-07 Score=59.07 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=55.7
Q ss_pred HHHHHHHhcC-CC-CCcccHHHHHHHHHhh--CCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 119 LDRVFDLFDE-KK-NGVIDFEEFVHALNVF--HPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 119 ~~~if~~~d~-~~-~g~I~~~eF~~~~~~~--~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
+-.+|..||. ++ +|.|+.+||..++... .......+.+..+|+.+|.|++|.|+++||..++..+.
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4578999998 67 8999999999999742 23456788999999999999999999999999987543
No 55
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.62 E-value=2.6e-07 Score=59.24 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=54.8
Q ss_pred HHHHHHHhcC--CCCCcccHHHHHHHHHhhCCC----CChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 028692 119 LDRVFDLFDE--KKNGVIDFEEFVHALNVFHPY----APIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAI 183 (205)
Q Consensus 119 ~~~if~~~d~--~~~g~I~~~eF~~~~~~~~~~----~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 183 (205)
+..+|..+|. +++|.|++.||..++....+. ....+.+..++..+|.+++|.|++++|..++..+
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 6789999999 899999999999998753211 2346789999999999999999999999987643
No 56
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.1e-06 Score=67.72 Aligned_cols=166 Identities=13% Similarity=0.169 Sum_probs=111.3
Q ss_pred hhhccCCCcccchhhhhhhhhcch--------H---HHHHHHHHHhhcccccCCCCCCCCCCHHHHHHHHhhCCCCHHHH
Q 028692 11 RAFDYDGSSSLTFGERICAACIPL--------I---AIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNEL 79 (205)
Q Consensus 11 ~~l~~~~~~r~~~~~~~~~pw~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i 79 (205)
.-.+.|.+.++++.+-+...|-.. . ..-......-...|......+.+.++.++|..+...-....=.-
T Consensus 120 ~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~ 199 (325)
T KOG4223|consen 120 DEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKD 199 (325)
T ss_pred HHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHH
Confidence 345678899999999877766410 0 00011111223356667888889999999988774322211112
Q ss_pred HHHHHHHHhhhcccccCCCCCHHHHHHHHhcCC-CCCh-----HHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChH
Q 028692 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQAP-YGEN-----LFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIE 153 (205)
Q Consensus 80 ~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~-----~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~ 153 (205)
--+.....-+|+ |++|+|+.+||..-|.... .+.. +..++.+...|.|++|+++-+|....+ .........
T Consensus 200 iVi~Etl~d~Dk--n~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI-~P~~~d~A~ 276 (325)
T KOG4223|consen 200 IVIAETLEDIDK--NGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWI-LPSEQDHAK 276 (325)
T ss_pred HHHHHHHhhccc--CCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhccc-CCCCccHHH
Confidence 224555667888 7999999999998765422 2222 226788999999999999999987432 222123345
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHH
Q 028692 154 DKIDFAFRLYDLRQTGYIEREEVKQM 179 (205)
Q Consensus 154 ~~~~~~F~~~D~~~~G~I~~~e~~~~ 179 (205)
...+.++...|.|++|.+|++|+..=
T Consensus 277 ~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 277 AEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred HHHHHHhhhhccCccccccHHHHhhC
Confidence 77888999999999999999998753
No 57
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.56 E-value=9.6e-07 Score=56.21 Aligned_cols=68 Identities=12% Similarity=0.363 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc-CC-----CCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 77 NELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-AP-----YGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 77 ~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~-~~-----~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
..+..+..+|+++.. +.+.++..||...+.. ++ ......+..+|...|.|+||.|+|.||+.++..+.
T Consensus 5 ~ai~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 446667888999975 5679999999998853 22 12344589999999999999999999999887654
No 58
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.51 E-value=8.9e-07 Score=70.73 Aligned_cols=171 Identities=15% Similarity=0.231 Sum_probs=107.3
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcc----------------hHHHHHHHHHHhhcccccCCCCCCCCCCHHHHHH
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIP----------------LIAIIEAVVITVASCFRYRPPVQKCRFDVGDLAR 67 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 67 (205)
+.-+.-|+|++.|.++-+...|--.-.-+- +......+...+...|- -...+++|+.+++..
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFF--G~rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFF--GKRGNGKLSIDEFLK 310 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhh--ccCCCccccHHHHHH
Confidence 444567899999999999988765443230 11122222222222221 233566788888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCC---CCC-hHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 028692 68 LAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAP---YGE-NLFLDRVFDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 68 l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~---~~~-~~~~~~if~~~d~~~~g~I~~~eF~~~~ 143 (205)
+.++. ..|+ +.-.|..+|+ ..+|.|+..+|..++-... ... ....+++-..++.++ -.|+++||.++.
T Consensus 311 F~e~L---q~Ei--l~lEF~~~~~--~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~-~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 311 FQENL---QEEI--LELEFERFDK--GDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG-KGISLQEFKAFF 382 (489)
T ss_pred HHHHH---HHHH--HHHHHHHhCc--ccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC-CCcCHHHHHHHH
Confidence 77543 2233 3344778887 3569999999999764322 221 222566777777653 359999998876
Q ss_pred HhhCCC--------------------------------CChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 144 NVFHPY--------------------------------APIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 144 ~~~~~~--------------------------------~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
..+..- ...+.-+.-+|..||.|+||.++.+||..+++.-+
T Consensus 383 ~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rm 455 (489)
T KOG2643|consen 383 RFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRM 455 (489)
T ss_pred HHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHh
Confidence 555420 01112344579999999999999999999998644
No 59
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.51 E-value=1.3e-06 Score=62.82 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=85.6
Q ss_pred hhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCC
Q 028692 70 AESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHP 148 (205)
Q Consensus 70 ~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~ 148 (205)
.-..|+..+|+.+...|..+|. +.||+|+..|++..|.+++.. ...-.+.++..+|.|.+|+|+|-||+-.+.....
T Consensus 89 eF~eFsrkqIk~~~~~Fk~yDe--~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 89 EFSEFSRKQIKDAESMFKQYDE--DRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHhcc--cccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 3357899999999999999999 689999999999999876543 2334789999999999999999999988776542
Q ss_pred C-CChHHHHHHHHHh--hCCCCCCcccHHHHHHH
Q 028692 149 Y-APIEDKIDFAFRL--YDLRQTGYIEREEVKQM 179 (205)
Q Consensus 149 ~-~~~~~~~~~~F~~--~D~~~~G~I~~~e~~~~ 179 (205)
. -..+..+..+=+. .|+..-|.-....|-++
T Consensus 167 gEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 167 GELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred cccccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 1 1234445555555 89999999888887765
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.49 E-value=2.2e-07 Score=46.35 Aligned_cols=27 Identities=41% Similarity=0.717 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHh
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNV 145 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~ 145 (205)
++++|+.+|.|++|.|+++||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 578999999999999999999988764
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.48 E-value=1.4e-06 Score=55.78 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHHHHHH-hcCCCCC-cccHHHHHHHHHhhC----CCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 119 LDRVFDL-FDEKKNG-VIDFEEFVHALNVFH----PYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 119 ~~~if~~-~d~~~~g-~I~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
+..+|.. +|.+++| .|+.+||..++.... ........+..+++.+|.|++|.|+++||.+++..+.
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5678888 6677876 999999999998763 1234467899999999999999999999999987643
No 62
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.46 E-value=1.2e-06 Score=51.51 Aligned_cols=60 Identities=32% Similarity=0.465 Sum_probs=49.1
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~ 143 (205)
+..+|..+|. +++|.|+.++|..++...+.. ....+..+|..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~--~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDK--DGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCC--CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3456777777 689999999999999865443 45557889999999999999999998764
No 63
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.42 E-value=1.4e-06 Score=59.59 Aligned_cols=95 Identities=12% Similarity=0.185 Sum_probs=72.7
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC--hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHH----
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE--NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDK---- 155 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~--~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~---- 155 (205)
+.+.|.. +|.|.+++++|.+++.-+.... ...+...|+.+|.|+++.|.-.+....+..+......+++
T Consensus 76 i~e~FSe-----DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i 150 (189)
T KOG0038|consen 76 ICEVFSE-----DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELI 150 (189)
T ss_pred HHHHhcc-----CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHH
Confidence 4455554 4899999999999875322211 2236788999999999999999999888887755544443
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 156 IDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 156 ~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+..+....|.||+|.|+..||..++-
T Consensus 151 ~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 151 CEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 45677788999999999999999874
No 64
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.42 E-value=1.9e-06 Score=55.18 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=54.9
Q ss_pred HHHHHHHhcCC--CCCcccHHHHHHHHHhhCCCCCh----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhh
Q 028692 119 LDRVFDLFDEK--KNGVIDFEEFVHALNVFHPYAPI----EDKIDFAFRLYDLRQTGYIEREEVKQMVAAILME 186 (205)
Q Consensus 119 ~~~if~~~d~~--~~g~I~~~eF~~~~~~~~~~~~~----~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~ 186 (205)
+-.+|..++.. .+|.|+..||..++....+.... .+.+..+|+.+|.+++|.|+++||..++..+...
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 56789999866 47899999999999744322223 7889999999999999999999999998765443
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=6.4e-07 Score=45.52 Aligned_cols=27 Identities=26% Similarity=0.655 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 155 KIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 155 ~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+++.+|+.||.|++|+|+.+||.++|+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999986
No 66
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.29 E-value=8.7e-06 Score=60.58 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=108.8
Q ss_pred hhhhhhhccCCCcccchhhhhhhhhcchHH--HHHHHHHHhhcccccCCCCCCCCCCHHHHHH-HHhhCCCCHHHH----
Q 028692 7 RSFLRAFDYDGSSSLTFGERICAACIPLIA--IIEAVVITVASCFRYRPPVQKCRFDVGDLAR-LAAESRFSVNEL---- 79 (205)
Q Consensus 7 ~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~i---- 79 (205)
..+|+-.++|-++.+||++. .-||.... .-+.........|....+.+.+.+.+++++. +.+...-+..++
T Consensus 104 mviFsKvDVNtDrkisAkEm--qrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadai 181 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEM--QRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAI 181 (362)
T ss_pred HHHHhhcccCccccccHHHH--HHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHh
Confidence 34666778899999999999 67886533 1122222333346667888899888888763 333222222221
Q ss_pred ----------------HHHHHHHHhhhcccccCCCCCHHHHHHHHhcCC--CCChHHHHHHHHHhcCCCCCcccHHHHHH
Q 028692 80 ----------------EALSELYKNLSCSIIKDGLIHKEELQVALFQAP--YGENLFLDRVFDLFDEKKNGVIDFEEFVH 141 (205)
Q Consensus 80 ----------------~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~--~~~~~~~~~if~~~d~~~~g~I~~~eF~~ 141 (205)
..+...+.+.|.. ..+-.++..||...|..-. ......++.+++.+|.|++..++..||+.
T Consensus 182 rlneelkVDeEtqevlenlkdRwyqaDsp-padlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFis 260 (362)
T KOG4251|consen 182 RLNEELKVDEETQEVLENLKDRWYQADSP-PADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFIS 260 (362)
T ss_pred hccCcccccHHHHHHHHhhhhhhccccCc-hhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhc
Confidence 2234444445442 1355677799998875211 11233489999999999999999999998
Q ss_pred HHHhhCC---CCCh-----HHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 142 ALNVFHP---YAPI-----EDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 142 ~~~~~~~---~~~~-----~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
+...-.. .... ..+.+..=..+|.|++|.+|++|+...+
T Consensus 261 lpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 261 LPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred CCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 6433221 1111 2345555667899999999999998874
No 67
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.28 E-value=1.1e-06 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=17.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHH
Q 028692 156 IDFAFRLYDLRQTGYIEREEVKQM 179 (205)
Q Consensus 156 ~~~~F~~~D~~~~G~I~~~e~~~~ 179 (205)
++.+|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356777788888888888877764
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.24 E-value=2.3e-06 Score=56.32 Aligned_cols=70 Identities=23% Similarity=0.468 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 73 ~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
.+++.|......+|..+++ ++|+|+-.+.+..+.+.++. ...+..|+...|.+++|.++++||+.+|...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~-~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLP-RDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSS-HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCC-HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3466778888899998876 78999999999988765554 3557899999999999999999999887654
No 69
>PF14658 EF-hand_9: EF-hand domain
Probab=98.23 E-value=7.9e-06 Score=48.59 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=38.1
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCC-CcccHHHHHHHHH
Q 028692 122 VFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQT-GYIEREEVKQMVA 181 (205)
Q Consensus 122 if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-G~I~~~e~~~~l~ 181 (205)
+|..||.++.|.|.-.+++.++.......+.+.++..+...+|.+|. |.|+++.|..+|+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 46666666666666666666666665335556666666666666666 6666666666654
No 70
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.21 E-value=1.9e-05 Score=64.33 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc-CCC-CChHH-HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCC
Q 028692 75 SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APY-GENLF-LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAP 151 (205)
Q Consensus 75 ~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~-~~~-~~~~~-~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 151 (205)
.+.++..++-.|...+. ++..+.+.++|...... .+. ..++. ++.+-...|..+||.|+|+||+++-..+| .
T Consensus 31 ~~~eLr~if~~~as~e~--~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~ 105 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEK--NGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---A 105 (694)
T ss_pred ChHHHHHHHHHHhHHhh--ccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---C
Confidence 45666666666666655 57778999999985432 111 22333 45555566778999999999999887777 3
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 028692 152 IEDKIDFAFRLYDLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 152 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 182 (205)
++.....+|+.||..++|.++.+++..++..
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 4667889999999999999999999999874
No 71
>PLN02964 phosphatidylserine decarboxylase
Probab=98.21 E-value=1.7e-05 Score=67.88 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=71.7
Q ss_pred HHhhcccccCCCCCCCCCCHHHHHHHHhhCC---CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHH
Q 028692 43 ITVASCFRYRPPVQKCRFDVGDLARLAAESR---FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLF 118 (205)
Q Consensus 43 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~---~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~ 118 (205)
+.+...|...++.+++.+ +..+.+... .++.+...+..+|..+|. +++|.|+++||..++..++.. ....
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~--DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDY--DEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCC--CCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 344455656666666654 444444333 455655557777777887 699999999999988765432 3445
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
+.++|+.+|.|++|.|+++||..++...
T Consensus 217 L~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 217 KEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 8999999999999999999999998774
No 72
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.10 E-value=1.2e-05 Score=65.23 Aligned_cols=55 Identities=31% Similarity=0.468 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 116 NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 116 ~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
...+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||.+.++..+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 33478999999999999999999942 46789999999999999999999987543
No 73
>PF14658 EF-hand_9: EF-hand domain
Probab=98.04 E-value=1.8e-05 Score=47.10 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=50.1
Q ss_pred HHHhhhcccccCCCCCHHHHHHHHhcCCC-CC-hHHHHHHHHHhcCCCC-CcccHHHHHHHHHhh
Q 028692 85 LYKNLSCSIIKDGLIHKEELQVALFQAPY-GE-NLFLDRVFDLFDEKKN-GVIDFEEFVHALNVF 146 (205)
Q Consensus 85 ~f~~~d~~~~~~g~i~~~ef~~~l~~~~~-~~-~~~~~~if~~~d~~~~-g~I~~~eF~~~~~~~ 146 (205)
.|+.+|+ ++.|.|...++...|+..+. .+ ...++.+.+.+|.++. |.|+++.|+..|..+
T Consensus 3 ~F~~fD~--~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDT--QKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCC--cCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4677777 59999999999999987665 33 3458999999999987 999999999998754
No 74
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.02 E-value=6.9e-05 Score=50.99 Aligned_cols=120 Identities=15% Similarity=0.085 Sum_probs=77.5
Q ss_pred CCCCCCHHHHHHHHhhCC--CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCC----CChHHHHHHHHHhcCC
Q 028692 56 QKCRFDVGDLARLAAESR--FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY----GENLFLDRVFDLFDEK 129 (205)
Q Consensus 56 ~~~~l~~~~~~~l~~~~~--~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~if~~~d~~ 129 (205)
..++++........+... .+..++......+..-.- +-..|++++|...+.+... ......-+-++.||.+
T Consensus 24 gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~---~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDke 100 (152)
T KOG0030|consen 24 GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREM---NVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKE 100 (152)
T ss_pred CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchh---hhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhccc
Confidence 444555555555544433 355555554444433211 3357888888887754332 1233345677888999
Q ss_pred CCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 130 KNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 130 ~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
++|.|...|+..++..+. .+..+++...+..-. .|.+|.|.++.|.+.+
T Consensus 101 g~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 101 GNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred CCcceeHHHHHHHHHHHH-hhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 999999999999988887 566677777666665 5778999999988765
No 75
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.02 E-value=1.6e-06 Score=65.11 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=31.9
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+++||++.+.|||..||.+|+|+.++++|||+..
T Consensus 239 is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~ 272 (355)
T KOG0033|consen 239 VTPEAKSLIRRMLTVNPKKRITADEALKHPWICN 272 (355)
T ss_pred CCHHHHHHHHHHhccChhhhccHHHHhCCchhcc
Confidence 4679999999999999999999999999999965
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.98 E-value=7.9e-05 Score=60.84 Aligned_cols=114 Identities=16% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCC-------CChHHHHHHHHHhc
Q 028692 55 VQKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY-------GENLFLDRVFDLFD 127 (205)
Q Consensus 55 ~~~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~-------~~~~~~~~if~~~d 127 (205)
.+++.+++.++..+.........-....++.|++. ++|.++.+++.+.+.+... ..++.++..|..
T Consensus 86 tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~-----~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~-- 158 (694)
T KOG0751|consen 86 TKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRL-----GNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD-- 158 (694)
T ss_pred cccccccHHHHHHHHhhccCchHHHHHHHHHhccc-----CCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh--
Confidence 34556666666665543333322233334444433 6667777777776644221 123334443333
Q ss_pred CCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 128 EKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 128 ~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+....++|.+|..++..+. .+.-+++|+..|+.++|.|+.-+|..++.
T Consensus 159 -~~~r~~ny~~f~Q~lh~~~-----~E~~~qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 159 -IRKRHLNYAEFTQFLHEFQ-----LEHAEQAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred -HHHHhccHHHHHHHHHHHH-----HHHHHHHHHHhcccCCCeeeeechHhhhh
Confidence 3344577777776665544 35578999999999999999999999864
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.94 E-value=1.6e-05 Score=38.15 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHH
Q 028692 120 DRVFDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 120 ~~if~~~d~~~~g~I~~~eF~~~~ 143 (205)
+.+|..+|.|++|.|+++||..++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 568999999999999999988753
No 78
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.90 E-value=0.00014 Score=52.54 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHH
Q 028692 118 FLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLE 197 (205)
Q Consensus 118 ~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~ 197 (205)
....+|..||.+.||+|++.|...+|-.+. ..+++-.++...+..|.|++|.|++.||--+++.. ..|+--.+..+.
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrka--aagEL~~ds~~~ 176 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA--AAGELQEDSGLL 176 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH--hccccccchHHH
Confidence 468899999999999999999999988887 67788889999999999999999999998887732 335433344444
Q ss_pred HHH
Q 028692 198 AII 200 (205)
Q Consensus 198 ~~~ 200 (205)
.+.
T Consensus 177 ~LA 179 (244)
T KOG0041|consen 177 RLA 179 (244)
T ss_pred HHH
Confidence 443
No 79
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.88 E-value=7.6e-06 Score=65.56 Aligned_cols=53 Identities=26% Similarity=0.564 Sum_probs=44.8
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 129 KKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 129 ~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
+.+|.|+|.||+-+++.+. .++...+-+|++||.||||.|+.+||.++.+.+.
T Consensus 211 g~~GLIsfSdYiFLlTlLS---~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~ 263 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLS---IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIR 263 (489)
T ss_pred CCCCeeeHHHHHHHHHHHc---cCcccceeeeeeeecCCCCcccHHHHHHHHHHHH
Confidence 4468999999999888876 3455678899999999999999999999886544
No 80
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.80 E-value=0.00029 Score=44.95 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhC----CCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFH----PYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
+-.+|..|.. ..+.++..||..++..-. ........+..+|+.+|.|+||.|++.||..++..+.
T Consensus 10 lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 10 MMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4568888873 356999999999986543 2344567899999999999999999999999987543
No 81
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.78 E-value=0.00014 Score=58.60 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=96.9
Q ss_pred hhhhhccCCCcccchhhhhhhhhcchHH---HHHHH---HHHhhcccccCCCCCCCCCCHHHHHHHHhh-CCCCHHHHHH
Q 028692 9 FLRAFDYDGSSSLTFGERICAACIPLIA---IIEAV---VITVASCFRYRPPVQKCRFDVGDLARLAAE-SRFSVNELEA 81 (205)
Q Consensus 9 ~~~~l~~~~~~r~~~~~~~~~pw~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~i~~ 81 (205)
+++-......+|++..|.+.- ..+.+ +.+.+ ...+...|...++.+.+.++........++ +++.-.- ..
T Consensus 426 fvQY~a~k~t~~~tlrqR~~~--vEeSAlk~Lrerl~s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPW-r~ 502 (631)
T KOG0377|consen 426 FVQYQAAKQTKRLTLRQRMGI--VEESALKELRERLRSHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPW-RL 502 (631)
T ss_pred HHHHHhhhhhhhhhHHHHhhH--HHHHHHHHHHHHHHhhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcH-HH
Confidence 344444456666776666432 11111 11111 123334555667777777775554433322 2221111 01
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHhcCCC-------------CChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCC
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPY-------------GENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHP 148 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~-------------~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~ 148 (205)
+....-.. ..+|++.+.+-.+.+..-.. .....++-+|+.+|.|++|.|+.+||..++..+..
T Consensus 503 L~~kla~~----s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 503 LRPKLANG----SDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred hhhhccCC----CcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 11111111 25677777666554431110 01223689999999999999999999998877652
Q ss_pred ---CCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 149 ---YAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 149 ---~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
....+..+-.+=+.+|.|+||.|+..||.++++
T Consensus 579 h~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 579 HMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 234567788888999999999999999999987
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.74 E-value=9.8e-05 Score=59.96 Aligned_cols=53 Identities=32% Similarity=0.414 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 80 ~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
..+...|..+|. +++|+|+.+||.. +..+|..+|.|++|.|+++||..++...
T Consensus 334 ~~l~~aF~~~D~--dgdG~Is~~E~~~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDL--DGDGFITREEWLG------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCC--CCCCcCcHHHHHH------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 345667778888 6999999999942 4789999999999999999999987543
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.64 E-value=0.00034 Score=39.30 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 134 IDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 134 I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
++|.|...++...- -...+.....+|+..|++++|.+..+||.+.++
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 45555555544443 333445555566666666666666666665554
No 84
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.60 E-value=0.00011 Score=37.05 Aligned_cols=26 Identities=42% Similarity=0.786 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALN 144 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~ 144 (205)
++.+|+.+|.+++|.|+++||..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 46788888888888888888888775
No 85
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.55 E-value=0.00034 Score=57.61 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC----hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE----NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~----~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
..++..|+..+...|...|. ++|+|+..++..++.+..... ...++.+....+.|.+|.|+|++|+..+..+.
T Consensus 11 ~~~tq~El~~l~~kF~~~d~---~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLDD---QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccccHHHHHHHHHHHHhhcC---CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 67899999999999999985 999999999999987644322 45589999999999999999999999766554
No 86
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.53 E-value=0.0003 Score=54.62 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=66.0
Q ss_pred cCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHH
Q 028692 95 KDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIERE 174 (205)
Q Consensus 95 ~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~ 174 (205)
+.+.|...||...++ .........+|..||.+++|.++|-|.+..+..++.-......++-+|+.|+.+-||+++..
T Consensus 240 kg~~igi~efa~~l~---vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~ 316 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLR---VPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEH 316 (412)
T ss_pred cCCCcceeEeeeeee---cchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchH
Confidence 455677777765543 11223357899999999999999999988888888555677888899999999999999999
Q ss_pred HHHHHHHH
Q 028692 175 EVKQMVAA 182 (205)
Q Consensus 175 e~~~~l~~ 182 (205)
+|.-+++.
T Consensus 317 ~ls~ilq~ 324 (412)
T KOG4666|consen 317 ILSLILQV 324 (412)
T ss_pred HHHHHHHH
Confidence 88888764
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.50 E-value=0.0004 Score=38.99 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=36.7
Q ss_pred CCHHHHHHHHhcCCCCChH-HHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 99 IHKEELQVALFQAPYGENL-FLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 99 i~~~ef~~~l~~~~~~~~~-~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
+++.|+...|+.++...+. -+..+|+.+|.+++|.+..+||..+...+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 5788999999887776543 48899999999999999999999887543
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.44 E-value=9.7e-05 Score=49.50 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHH
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVH 141 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~ 141 (205)
+.=.|..+|. |+||.|+..|+......+ .....-+...++.+|.|+||.|+..|+..
T Consensus 56 ~~W~F~~LD~--n~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 56 VHWKFCQLDR--NKDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHH----T-SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhHhhhcC--CCCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3444556666 466666666666543211 22223345566666666666666666543
No 89
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.43 E-value=5e-05 Score=61.77 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=32.1
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
++.+|++.+.++|..||.+|+||.++++|||+.+.
T Consensus 265 is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~ 299 (382)
T KOG0032|consen 265 ISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSI 299 (382)
T ss_pred cCHHHHHHHHHhcccCcccCCCHHHHhcCccccCC
Confidence 36789999999999999999999999999999763
No 90
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=6.9e-05 Score=60.15 Aligned_cols=35 Identities=9% Similarity=-0.083 Sum_probs=31.9
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
+.+|.+.|-+||.+||..|+|+.++++|||+.-.+
T Consensus 410 seea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~ 444 (475)
T KOG0615|consen 410 SEEALDLINWMLVVDPENRPSADEALNHPWFKDAP 444 (475)
T ss_pred hHHHHHHHHHhhEeCcccCcCHHHHhcChhhhccc
Confidence 56789999999999999999999999999998654
No 91
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.25 E-value=0.0019 Score=42.50 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 028692 118 FLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAI 183 (205)
Q Consensus 118 ~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 183 (205)
....+|...+. ++|.|+-.+-..++.. .+...+.+..+|.+.|.+++|+++.+||.-++..+
T Consensus 11 ~y~~~F~~l~~-~~g~isg~~a~~~f~~---S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 11 KYDQIFQSLDP-QDGKISGDQAREFFMK---SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHCTSS-STTEEEHHHHHHHHHH---TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCeEeHHHHHHHHHH---cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 36789998884 6899999998776543 35677899999999999999999999999988754
No 92
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.24 E-value=0.0079 Score=51.99 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCC-hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHH
Q 028692 78 ELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE-NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKI 156 (205)
Q Consensus 78 ~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~-~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 156 (205)
...-+..+|+..|. +++|.++..+...++....... ...+..+|+..+..+++++...+|..+..... ... ++
T Consensus 134 ~~~wi~~~~~~ad~--~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~-~rp---ev 207 (746)
T KOG0169|consen 134 REHWIHSIFQEADK--NKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT-KRP---EV 207 (746)
T ss_pred HHHHHHHHHHHHcc--ccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc-cCc---hH
Confidence 34447788999998 7999999999999887655443 23367889988989999999999999877666 222 78
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 157 DFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 157 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
..+|..+ .++.+.++.+++...|... +-..+.+.+..+++++++
T Consensus 208 ~~~f~~~-s~~~~~ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii~~~ 251 (746)
T KOG0169|consen 208 YFLFVQY-SHGKEYLSTDDLLRFLEEE--QGEDGATLDEAEEIIERY 251 (746)
T ss_pred HHHHHHH-hCCCCccCHHHHHHHHHHh--cccccccHHHHHHHHHHh
Confidence 8889888 4559999999999998743 333568999999999765
No 93
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.18 E-value=0.00022 Score=47.77 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 028692 114 GENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQM 179 (205)
Q Consensus 114 ~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~ 179 (205)
.....+...|..+|.|+||.++-.|+..+-..+ ...+.=++..|+..|.|+||.|+..|+..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 345568999999999999999999977665433 233444778899999999999999998653
No 94
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.14 E-value=0.00061 Score=32.80 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=20.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 156 IDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 156 ~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
++.+|+.+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 46678888888888888888887764
No 95
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.13 E-value=0.0017 Score=48.62 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 137 EEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 137 ~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+||..++.-.+..+....-.+.+.+.+|.||+..++..||.....
T Consensus 219 eEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpv 263 (362)
T KOG4251|consen 219 EEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPV 263 (362)
T ss_pred HHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCC
Confidence 555544433332222334567788899999999999999987643
No 96
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.00017 Score=55.22 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=30.7
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
++.+++.+.++|.+||++|+|+.+++.|||+..
T Consensus 256 s~~~KdLIsrlLqVdp~~Ritake~LaHpff~q 288 (411)
T KOG0599|consen 256 SATVKDLISRLLQVDPTKRITAKEALAHPFFIQ 288 (411)
T ss_pred cccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence 567899999999999999999999999999955
No 97
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.11 E-value=0.0035 Score=53.10 Aligned_cols=110 Identities=23% Similarity=0.402 Sum_probs=82.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCC-------------CCCHHHHHHHHhcCCCCC--hHHHHHHHHHhcC
Q 028692 64 DLARLAAESRFSVNELEALSELYKNLSCSIIKDG-------------LIHKEELQVALFQAPYGE--NLFLDRVFDLFDE 128 (205)
Q Consensus 64 ~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g-------------~i~~~ef~~~l~~~~~~~--~~~~~~if~~~d~ 128 (205)
.++.+.....++..++..++.+|..--.. +.-| +|+++.|..++.....+. .....++|...|.
T Consensus 488 ~lrs~~~~~~lt~~dL~~lYd~f~~e~~~-~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 488 ILRSVVQTTSLTNTDLENLYDLFKEEHLT-NSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHhhcccCccCHHHHHHHHHHHHHHHhc-cCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 45666667889999999999998753221 1111 244455555544322222 2337899999999
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHH
Q 028692 129 KKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEV 176 (205)
Q Consensus 129 ~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~ 176 (205)
+.+|.|+|.+++.++..++ .+..-++++.+|+++|.+++ ....++.
T Consensus 567 s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 9999999999999999998 78888999999999999999 8888876
No 98
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.09 E-value=0.0028 Score=58.39 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCC------CCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCC-C
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHP------YAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIK-L 191 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~------~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~-l 191 (205)
..-+|+.||.+.+|.++|.+|..|+..+.- .+.++..++.+....|++.+|+|+..+-...|- .+-..+ +
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi---~~ETeNI~ 2331 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI---SKETENIL 2331 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH---hccccccc
Confidence 578999999999999999999999887642 345567899999999999999999999888763 222222 6
Q ss_pred CHHHHHHHHHH
Q 028692 192 PDDLLEAIIDK 202 (205)
Q Consensus 192 ~~~e~~~~~~~ 202 (205)
+.++|+..++.
T Consensus 2332 s~~eIE~Afra 2342 (2399)
T KOG0040|consen 2332 SSEEIEDAFRA 2342 (2399)
T ss_pred chHHHHHHHHH
Confidence 67788888764
No 99
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.91 E-value=0.0013 Score=56.39 Aligned_cols=118 Identities=10% Similarity=0.088 Sum_probs=66.2
Q ss_pred hhhhhhhhccCCCcccchhhhhhhhhcchHHHHHHHHHHhhcccccCCCCCCCCCCHHHHHHHHhhCCCCHHHHHHHHHH
Q 028692 6 NRSFLRAFDYDGSSSLTFGERICAACIPLIAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSEL 85 (205)
Q Consensus 6 ~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~l~~~ 85 (205)
.+.+.+||.+||.+|+|+.++++|||+........ ...+.. .+.. .... .....+-...+...
T Consensus 427 ~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~~~~~---~~~~~~---------~~~~--~~~~---~~~~~~~~~~~~~~ 489 (566)
T PLN03225 427 WELLKSMMRFKGRQRISAKAALAHPYFDREGLLGL---SVMQNL---------RLQL--FRAT---QQDYGEAAAWVVFL 489 (566)
T ss_pred HHHHHHHccCCcccCCCHHHHhCCcCcCCCCcccc---cccccc---------cccc--chhh---HHHHHHHHHHHHHH
Confidence 36888999999999999999999999976331100 011100 0000 0000 00001112233444
Q ss_pred HHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHH
Q 028692 86 YKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHA 142 (205)
Q Consensus 86 f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~ 142 (205)
..+.++ +.+|-.+..++.......... ....-..+....+.+..|..++.+++..
T Consensus 490 ~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (566)
T PLN03225 490 MAKSGT--EKEGGFTEAQLQELREKEPKKKGSAQRNALASALRLQRKGVKTVARTVDE 545 (566)
T ss_pred HHhcCC--CCCCCccHHHHHHhhhhcCcchhhhhhhhHHHHHhhhhhhhhhhhhhhhc
Confidence 444444 467778888888766543222 1211234777777777888888887664
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.83 E-value=0.0023 Score=30.63 Aligned_cols=26 Identities=50% Similarity=0.862 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALN 144 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~ 144 (205)
++.+|..+|.+++|.|++.+|..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 35688888888888888888887764
No 101
>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]
Probab=96.79 E-value=0.00035 Score=54.21 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
|+..|++.|.++|.++|+.|+|+.+.+.|||+...
T Consensus 294 VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~ 328 (400)
T KOG0604|consen 294 VSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQY 328 (400)
T ss_pred HHHHHHHHHHHHhcCCchhheeHHHhhcCchhccc
Confidence 45678999999999999999999999999999653
No 102
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0072 Score=39.91 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCC-----------CCChHH----HHHHHHHhcCCCCCcccH
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAP-----------YGENLF----LDRVFDLFDEKKNGVIDF 136 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~-----------~~~~~~----~~~if~~~d~~~~g~I~~ 136 (205)
..+++++++- ..|...|- +++|+++--|+.+++.... +..+.. +..+.+.-|.|+||.|+|
T Consensus 61 a~mtpeqlqf--HYF~MHDl--dknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDY 136 (144)
T KOG4065|consen 61 AKMTPEQLQF--HYFSMHDL--DKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDY 136 (144)
T ss_pred hhCCHHHHhh--hhhhhhcc--CcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeH
Confidence 3456666554 34777777 6899999999999874311 111112 455666668888999999
Q ss_pred HHHHHH
Q 028692 137 EEFVHA 142 (205)
Q Consensus 137 ~eF~~~ 142 (205)
.||+..
T Consensus 137 gEflK~ 142 (144)
T KOG4065|consen 137 GEFLKR 142 (144)
T ss_pred HHHHhh
Confidence 998753
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.68 E-value=0.0042 Score=48.47 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=75.6
Q ss_pred HHHHHHHHhhhcccccCCCCCHHHHHHHHhc--CCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHH
Q 028692 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQ--APYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKID 157 (205)
Q Consensus 80 ~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~--~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~ 157 (205)
..+...|..+|. +++|-+++.+-..++.- .+......++-.|+.|+...||.+.-.+|...+.... +...-++.
T Consensus 259 d~l~~~f~LFde--~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDE--GTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVP 334 (412)
T ss_pred hhhhhhhheecC--CCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--Ccceeecc
Confidence 445666777777 58999999888776642 2233455689999999999999999999888776665 33344567
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHH
Q 028692 158 FAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 158 ~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
-+|+..+...+|.|++++|++...
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHH
Confidence 789999999999999999999753
No 104
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=96.67 E-value=0.00076 Score=53.28 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=30.6
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
++.|.+.+-+||..||.+|+|+.+++.||++..
T Consensus 283 ~p~AidLlekmL~fdP~kRita~eAL~hPYl~~ 315 (359)
T KOG0660|consen 283 NPLAIDLLEKMLVFDPKKRITAEEALAHPYLAP 315 (359)
T ss_pred CHHHHHHHHHHhccCccccCCHHHHhcChhhhh
Confidence 567889999999999999999999999999965
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.028 Score=48.85 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 74 ~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
++..+-..-...|+.+.+ +.|+|+-..-+.++.+.++. .+.+.+|+..-|.|+||+++-.||.-.|...
T Consensus 10 vT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~LP-~~VLaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSGLP-TPVLAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred cchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcCCC-hHHHHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 466677777788888876 78899998888887654443 3446788999999999999999998876653
No 106
>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=0.0011 Score=56.50 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=30.7
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+++.|-+++.+||++||.+|+|.++++.|||+..
T Consensus 235 Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g 268 (786)
T KOG0588|consen 235 ISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSG 268 (786)
T ss_pred CCHHHHHHHHHHhccCccccccHHHHhhCchhhc
Confidence 3677888999999999999999999999999944
No 107
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=96.29 E-value=0.0016 Score=52.57 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.6
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.+++.+.+||..||.+|+|+.++++|||+..
T Consensus 292 ~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~ 323 (364)
T cd07875 292 SQARDLLSKMLVIDASKRISVDEALQHPYINV 323 (364)
T ss_pred HHHHHHHHHhcCcCcccCCCHHHHhcCccccc
Confidence 35678899999999999999999999999964
No 108
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=96.24 E-value=0.002 Score=51.98 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=28.5
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.+.+.+.+||..||.+|+|+.+++.|||+..
T Consensus 289 ~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~ 320 (359)
T cd07876 289 SQARDLLSKMLVIDPDKRISVDEALRHPYITV 320 (359)
T ss_pred hhHHHHHHHHhccCcccCCCHHHHhcCchhhh
Confidence 44678889999999999999999999999964
No 109
>PTZ00036 glycogen synthase kinase; Provisional
Probab=96.15 E-value=0.0018 Score=53.83 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=29.8
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.++.+.+.+||.+||.+|+|+.+++.|||+..
T Consensus 324 ~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~ 356 (440)
T PTZ00036 324 PDDAINFISQFLKYEPLKRLNPIEALADPFFDD 356 (440)
T ss_pred CHHHHHHHHHHCCCChhHCcCHHHHhCChhHHh
Confidence 346788999999999999999999999999965
No 110
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=96.09 E-value=0.0023 Score=51.43 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.5
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.+++.+.+||..||.+|+|+.+++.|||+..
T Consensus 285 ~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~ 316 (355)
T cd07874 285 SQARDLLSKMLVIDPAKRISVDEALQHPYINV 316 (355)
T ss_pred hHHHHHHHHHhcCCchhcCCHHHHhcCcchhc
Confidence 34578899999999999999999999999964
No 111
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.03 E-value=0.042 Score=45.06 Aligned_cols=172 Identities=12% Similarity=0.123 Sum_probs=105.4
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcchHHHH--HHHHHHhhc------------ccccCCCCCCCCCCHHHHHHHHh
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPLIAII--EAVVITVAS------------CFRYRPPVQKCRFDVGDLARLAA 70 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~--~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~l~~ 70 (205)
+...||=.+++..++|++..+.+..-.+...... +........ .|...+...++.+..+++.....
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 3445666788888999999998776555332211 001101111 13333445566667666665432
Q ss_pred hCCCCHHHHHHHHHHHHh-hhcccccCCCCCHHHHHHHHhcC-CCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCC
Q 028692 71 ESRFSVNELEALSELYKN-LSCSIIKDGLIHKEELQVALFQA-PYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHP 148 (205)
Q Consensus 71 ~~~~~~~~i~~l~~~f~~-~d~~~~~~g~i~~~ef~~~l~~~-~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~ 148 (205)
..++..-++.++...-+ .-. ..+|.+++++|...+... +....+.++-.|+.+|.+++|.++-.|...+....++
T Consensus 306 -~tlt~~ivdRIFs~v~r~~~~--~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~ 382 (493)
T KOG2562|consen 306 -HTLTERIVDRIFSQVPRGFTV--KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQ 382 (493)
T ss_pred -cchhhHHHHHHHhhcccccee--eecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHH
Confidence 23343334444431111 111 268999999999976432 2334555899999999999999998886554333221
Q ss_pred --------CCChHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 028692 149 --------YAPIEDKIDFAFRLYDLRQTGYIEREEVKQM 179 (205)
Q Consensus 149 --------~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~ 179 (205)
....+.-+-+++.+.-....|.||..+|+..
T Consensus 383 rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 383 RMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred HHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 1234566778999998888999999999874
No 112
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=95.95 E-value=0.0029 Score=51.28 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=29.8
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
..+.+.+.+||..||.+|+|+.+++.|||+....
T Consensus 262 ~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~ 295 (372)
T cd07853 262 HEAVHLLCRMLVFDPDKRISAADALAHPYLDEGR 295 (372)
T ss_pred HHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCCc
Confidence 4567788999999999999999999999997643
No 113
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=95.88 E-value=0.0034 Score=49.17 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=32.4
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchHHHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIAII 38 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~ 38 (205)
+.||.+.+-+||.+||.+|+|+.++++||++...+++
T Consensus 310 ~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lp 346 (438)
T KOG0666|consen 310 DPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLP 346 (438)
T ss_pred CchHHHHHHHHhccCchhhccHHHHhcccccccCCCC
Confidence 4569999999999999999999999999999765433
No 114
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=95.83 E-value=0.0039 Score=49.58 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=28.6
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+...+.+.+||..||.+|+++.+++.|||+..
T Consensus 264 ~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~ 295 (338)
T cd07859 264 PLALRLLERLLAFDPKDRPTAEEALADPYFKG 295 (338)
T ss_pred hHHHHHHHHHcCcCcccCCCHHHHhcCchhhh
Confidence 34567888999999999999999999999976
No 115
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.80 E-value=0.044 Score=34.36 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCC-CChHHHHHHHHHhhCCC----CCCcccHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPY-APIEDKIDFAFRLYDLR----QTGYIEREEVKQMV 180 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~-~~~~~~~~~~F~~~D~~----~~G~I~~~e~~~~l 180 (205)
+..+|..+.. +.+.|+.++|..++....+. ......+..++..|..+ ..+.++.+.|...|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 3456666644 45566666666666555532 12355555566655433 25666666666665
No 116
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=95.78 E-value=0.0036 Score=50.08 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=27.9
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
.+.+.+.+||..||.+|+|+.+++.|||+..
T Consensus 273 ~~~~li~~mL~~dp~~R~s~~ell~hp~~~~ 303 (343)
T cd07878 273 LAIDLLEKMLVLDSDKRISASEALAHPYFSQ 303 (343)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHhcCcchhc
Confidence 4567888999999999999999999999965
No 117
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=95.65 E-value=0.0037 Score=47.86 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=32.0
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchHHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIAI 37 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~ 37 (205)
++.+.+.+.+|+..||.+|+++.|++.|||+.+.|.
T Consensus 254 s~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~ 289 (318)
T KOG0659|consen 254 SSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPL 289 (318)
T ss_pred cHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCC
Confidence 467788999999999999999999999999986553
No 118
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=95.46 E-value=0.0051 Score=49.44 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=27.9
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
.+.+.+.+||..||.+|+|+.+++.|||+..
T Consensus 286 ~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~ 316 (353)
T cd07850 286 QARDLLSKMLVIDPEKRISVDDALQHPYINV 316 (353)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence 3567899999999999999999999999863
No 119
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=95.43 E-value=0.0032 Score=49.51 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=32.8
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
+++.|++.+.++|.+++..|+++.+.++|||++...
T Consensus 333 IS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~~ 368 (463)
T KOG0607|consen 333 ISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRCA 368 (463)
T ss_pred hhHHHHHHHHHHHhccHHhhhhhhhccCCccccccc
Confidence 468899999999999999999999999999998743
No 120
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.43 E-value=0.12 Score=46.05 Aligned_cols=102 Identities=22% Similarity=0.181 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChH------HHHHHHHHhcCCCCCcccHHHHHHHHHhhCC
Q 028692 75 SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENL------FLDRVFDLFDEKKNGVIDFEEFVHALNVFHP 148 (205)
Q Consensus 75 ~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~------~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~ 148 (205)
+.....++...|+..+. ...|.+++++|+.++...+..... ....+....|.+..|.++|.+|...|..-..
T Consensus 742 sQ~v~~ElrAle~~~~~--~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDK--IDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred hHHHHHHHHHHHhHHHH--hhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 44455667777777776 356789999999998765554321 1344555667777799999999999988775
Q ss_pred CCChHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 028692 149 YAPIEDKIDFAFRLYDLRQTGYIEREEVKQM 179 (205)
Q Consensus 149 ~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~ 179 (205)
......++..+|+.+-++.. +|..+||..-
T Consensus 820 ~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~~ 849 (890)
T KOG0035|consen 820 DLDTELRAILAFEDWAKTKA-YLLLEELVRE 849 (890)
T ss_pred hhcHHHHHHHHHHHHHcchh-HHHHHHHHhh
Confidence 66778889999999966655 8999998873
No 121
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.34 E-value=0.0055 Score=50.65 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=26.1
Q ss_pred hhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 7 RSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 7 ~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
+.+.=||+.+|.+|.||++++.|||+.+.+
T Consensus 528 dFL~PmLef~PeKR~tA~~cl~hPwLn~~~ 557 (590)
T KOG1290|consen 528 DFLSPMLEFDPEKRPTAAQCLKHPWLNPVA 557 (590)
T ss_pred HHHHHHHhcCccccccHHHHhcCccccCCC
Confidence 445569999999999999999999998755
No 122
>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]
Probab=95.28 E-value=0.0058 Score=47.91 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=28.7
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcc
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~ 33 (205)
+-|.+..++||-.||.+|+++.+++.|||+.
T Consensus 284 ~~ardll~~MLvi~pe~Risv~daL~HPY~~ 314 (369)
T KOG0665|consen 284 SLARDLLSKMLVIDPEKRISVDDALRHPYIK 314 (369)
T ss_pred HHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence 4578889999999999999999999999997
No 123
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.92 E-value=0.1 Score=41.31 Aligned_cols=101 Identities=19% Similarity=0.076 Sum_probs=69.8
Q ss_pred CCHHHHHH----HHHHHHhhhcccccCCCCCHHHHHHHHhcCCC----CChHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 028692 74 FSVNELEA----LSELYKNLSCSIIKDGLIHKEELQVALFQAPY----GENLFLDRVFDLFDEKKNGVIDFEEFVHALNV 145 (205)
Q Consensus 74 ~~~~~i~~----l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~----~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~ 145 (205)
.+..++.. |...|..+-. ++++......+..+-..+.. .-...+.+||+..|.|.||.++..|...+-
T Consensus 201 Ct~qeL~~lg~RL~dWF~~lhe--~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~-- 276 (434)
T KOG3555|consen 201 CTDQELRRLGNRLRDWFKALHE--DSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE-- 276 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh--hhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh--
Confidence 45666544 5566665544 34454444444443222111 123348999999999999999999977654
Q ss_pred hCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 146 FHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 146 ~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
....+.=++..|...|...+|.|+-.|.-.++.
T Consensus 277 ---ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 277 ---LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred ---ccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 345566788999999999999999999988864
No 124
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=94.92 E-value=0.012 Score=47.01 Aligned_cols=32 Identities=6% Similarity=-0.044 Sum_probs=28.2
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+..+.+.+||.+||.+|+++.+++.|||+...
T Consensus 274 ~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~ 305 (333)
T cd06650 274 EFQDFVNKCLIKNPAERADLKQLMVHAFIKRS 305 (333)
T ss_pred HHHHHHHHhccCCcccCcCHHHHhhCHHHhcC
Confidence 34577889999999999999999999999753
No 125
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.88 E-value=0.06 Score=33.74 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=46.4
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHhcCCC---CChHHHHHHHHHhcCC----CCCcccHHHHHHHHHhhC
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPY---GENLFLDRVFDLFDEK----KNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~if~~~d~~----~~g~I~~~eF~~~~~~~~ 147 (205)
+..+|..+.. +.+.++.++|...|..... .....+..++..+..+ ..+.+++++|..++..-.
T Consensus 2 i~~if~~ys~---~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS---DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT---TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC---CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 4556666643 5789999999999963222 2355688899988654 468999999999986654
No 126
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=94.87 E-value=0.011 Score=46.80 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=28.8
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.+.+.+.+||..+|.+|+++.+++.|||+..
T Consensus 263 ~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~ 294 (330)
T cd07834 263 PEAIDLLEKMLVFDPKKRITADEALAHPYLAQ 294 (330)
T ss_pred HHHHHHHHHHccCChhhCCCHHHHHhCccHHh
Confidence 45667888999999999999999999999976
No 127
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=94.86 E-value=0.011 Score=47.26 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=28.3
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
..+.+.+.+||..||.+|+|+.+++.|||+..
T Consensus 274 ~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~ 305 (342)
T cd07854 274 PEALDFLEQILTFNPMDRLTAEEALMHPYMSC 305 (342)
T ss_pred HHHHHHHHHHhCCCchhccCHHHHhCCCcccc
Confidence 34557888999999999999999999999974
No 128
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=94.80 E-value=0.012 Score=47.08 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=28.1
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
.+..+.+.+||..+|.+|+|+.+++.|||+..
T Consensus 265 ~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~ 296 (337)
T cd07858 265 PLAIDLLEKMLVFDPSKRITVEEALAHPYLAS 296 (337)
T ss_pred HHHHHHHHHHhcCChhhccCHHHHHcCcchhh
Confidence 34567788999999999999999999999975
No 129
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=94.78 E-value=0.012 Score=50.00 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=27.0
Q ss_pred hhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 6 NRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 6 ~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
.+.+.+||+.||..|+|+.+++.|||+...
T Consensus 479 ~dflk~~L~~dP~~R~tp~qal~Hpfl~~~ 508 (586)
T KOG0667|consen 479 IDFLKRCLEWDPAERITPAQALNHPFLTGT 508 (586)
T ss_pred HHHHHHHhccCchhcCCHHHHhcCcccccc
Confidence 467889999999999999999999999753
No 130
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.77 E-value=0.046 Score=43.19 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=49.4
Q ss_pred HHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 81 ALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 81 ~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
.+-=+|+++|. |.+|.++..|++.+-. .+.+.-++..|+..|...||.|+-.|+..++..-
T Consensus 251 s~gWMFnklD~--N~Dl~Ld~sEl~~I~l---dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 251 SLGWMFNKLDT--NYDLLLDQSELRAIEL---DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhcccc--ccccccCHHHhhhhhc---cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 34456888998 7999999999998653 3345568999999999999999999999877543
No 131
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=94.75 E-value=0.011 Score=47.27 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=28.4
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
..+.+.+.+||..+|.+|+|+.+++.|||+..
T Consensus 272 ~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~ 303 (343)
T cd07851 272 PLAIDLLEKMLVLDPDKRITAAEALAHPYLAE 303 (343)
T ss_pred HHHHHHHHHhCCCChhhCCCHHHHhcCCCccc
Confidence 34567888899999999999999999999975
No 132
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.054 Score=35.87 Aligned_cols=59 Identities=25% Similarity=0.305 Sum_probs=44.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhhCCC---C------ChHHH----HHHHHHhhCCCCCCcccHHHHHHH
Q 028692 121 RVFDLFDEKKNGVIDFEEFVHALNVFHPY---A------PIEDK----IDFAFRLYDLRQTGYIEREEVKQM 179 (205)
Q Consensus 121 ~if~~~d~~~~g~I~~~eF~~~~~~~~~~---~------~~~~~----~~~~F~~~D~~~~G~I~~~e~~~~ 179 (205)
-.|...|.|++|.++=-|.+.+++..... + ..+.+ +..+.+--|.|++|+|++.||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 46788899999999999999988776530 1 12333 445566679999999999999875
No 133
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.66 E-value=0.015 Score=47.38 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=30.7
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+++++.++.+||..||.+|+++.+++.|||+..
T Consensus 248 S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~ 280 (370)
T KOG0583|consen 248 SPEARSLIEKMLVPDPSTRITLLEILEHPWFQK 280 (370)
T ss_pred CHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence 567889999999999999999999999999986
No 134
>PHA03210 serine/threonine kinase US3; Provisional
Probab=94.66 E-value=0.016 Score=49.15 Aligned_cols=31 Identities=6% Similarity=0.033 Sum_probs=26.8
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
..+.+.+||..||.+|+|+.+++.|||+...
T Consensus 430 ~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~ 460 (501)
T PHA03210 430 FEYPLVKMLTFDWHLRPGAAELLALPLFSAE 460 (501)
T ss_pred HHHHHHHHhccCcccCcCHHHHhhChhhhcC
Confidence 3455778999999999999999999999653
No 135
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.63 E-value=0.54 Score=33.70 Aligned_cols=62 Identities=10% Similarity=0.217 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCC------hHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAP------IEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~------~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
.++||..++..+.+.+++.|...++..-+...+ ..-++..+|.+. .+.+|.+.+++++.+..
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 578888888777778888888887766442111 134556666666 56688888888887754
No 136
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=94.55 E-value=0.014 Score=46.77 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=28.8
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
....+.+.+||..||.+|+|+.+++.|||+...
T Consensus 272 ~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~ 304 (343)
T cd07880 272 PLAVNVLEKMLVLDAESRITAAEALAHPYFEEF 304 (343)
T ss_pred hHHHHHHHHHcCCChhhCCCHHHHhcCccHhhh
Confidence 345678889999999999999999999999763
No 137
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.53 E-value=0.023 Score=34.33 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 151 PIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 151 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
.+.+.+..+|+.+ .++.++||.+||++.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3457899999999 8999999999999884
No 138
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.52 E-value=0.03 Score=43.92 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+.+-|..+|.|.++.|.-.|+..+-..+........=.+..|+..|.|+|..|+..|++.+|.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 678899999999999998887766555553334444567789999999999999999999975
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.44 E-value=0.48 Score=40.41 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHh---cCCCCCh--HHHHHHHHHhcCCC--CCcccHHHHHHHHHh
Q 028692 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALF---QAPYGEN--LFLDRVFDLFDEKK--NGVIDFEEFVHALNV 145 (205)
Q Consensus 73 ~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~---~~~~~~~--~~~~~if~~~d~~~--~g~I~~~eF~~~~~~ 145 (205)
.+.+.-+..+..+|..-|. |++|.++-.|+...=. ..++... ..++.+.+..=.+| ++.++..-|+.+...
T Consensus 188 elkp~~v~al~RIFki~D~--d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDS--DNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccHHHHHHHHHHHhhhcc--ccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 3466668889999999998 7999999999876421 1222221 12344444332222 334555556654433
Q ss_pred hCCC-----------------------------------------CChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 146 FHPY-----------------------------------------APIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 146 ~~~~-----------------------------------------~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
+... ...-+.+..+|..||.|+||.++..||..++.
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~ 342 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFS 342 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhh
Confidence 3210 00135678899999999999999999998865
No 140
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=94.42 E-value=0.016 Score=46.25 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=28.0
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+...+.+.+||..+|.+|+|+.+++.|||+..
T Consensus 266 ~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~ 297 (336)
T cd07849 266 PKALDLLDKMLTFNPHKRITVEEALAHPYLEQ 297 (336)
T ss_pred cHHHHHHHHHcCCChhhCcCHHHHhcCccccc
Confidence 34557788899999999999999999999974
No 141
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=94.39 E-value=0.027 Score=45.63 Aligned_cols=36 Identities=3% Similarity=-0.040 Sum_probs=31.0
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcchHHHH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLIAII 38 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~ 38 (205)
+++.+.+-|+|+.||.+|+||.++|.||++......
T Consensus 355 ~~~~dlLdk~le~np~kRitAEeALkHpFF~~~~~~ 390 (418)
T KOG1167|consen 355 ALLLDLLDKCLELNPQKRITAEDALKHPFFDEADRT 390 (418)
T ss_pred HHHHHHHHHHccCChhhcccHHHHhcCcCCcchhhh
Confidence 477788889999999999999999999999864433
No 142
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=94.35 E-value=0.07 Score=36.95 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCC-------CCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCC
Q 028692 97 GLIHKEELQVALFQAPYGENLFLDRVFDLFDEKK-------NGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQ 167 (205)
Q Consensus 97 g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~-------~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~ 167 (205)
+.|++.||...=.- ..-....++.++..|..+| .+.|+|+.|..+|..+.....+++-.+++|..|-...
T Consensus 6 ~~lsp~eF~qLq~y-~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKY-SEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHH-HHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 45666666653110 0001112455555553332 4589999999999999877778888999999995544
No 143
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=94.34 E-value=0.014 Score=46.32 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=30.6
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~~ 36 (205)
+.++.+.+.+||.+||.+|+ ++.+++.|||+.+..
T Consensus 219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~~ 258 (323)
T cd05571 219 SPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASIN 258 (323)
T ss_pred CHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence 45677888999999999999 899999999997743
No 144
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=94.31 E-value=0.017 Score=45.97 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=29.0
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
....+.+.+||..+|.+|+++.+++.|||+...+
T Consensus 268 ~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~ 301 (334)
T cd07855 268 PEALDLLSQMLQFDPEERITVEQALQHPFLAQYH 301 (334)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHhChhhhhcc
Confidence 3456678889999999999999999999997543
No 145
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=0.16 Score=42.26 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
..+++++-++....|..+-+ +.+|+|+-.--+..+.+..+ .-+.+.-|+...|.+.||-++..||++.+..+.
T Consensus 223 w~IT~EQReYYvnQFrtvQp--Dp~gfisGsaAknFFtKSkl-pi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQP--DPHGFISGSAAKNFFTKSKL-PIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred cccCHHHHHHHHhhhhcccC--CcccccccHHHHhhhhhccC-chHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 45688888899999999877 68999998887777765333 234578899999999999999999999887654
No 146
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=94.25 E-value=0.015 Score=48.05 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=29.0
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
..+++.+++||++||.+|+++.++-.|||...
T Consensus 346 e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~ 377 (576)
T KOG0585|consen 346 EDLKDLIKRLLEKDPEQRITLPDIKLHPWVTR 377 (576)
T ss_pred HHHHHHHHHHhhcChhheeehhhheecceecc
Confidence 45788999999999999999999999999944
No 147
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=94.22 E-value=0.017 Score=46.92 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=32.0
Q ss_pred CCcchhhhhhhhhccCCCcccc----hhhhhhhhhcchH
Q 028692 1 MDSSANRSFLRAFDYDGSSSLT----FGERICAACIPLI 35 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~----~~~~~~~pw~~~~ 35 (205)
++++|+++|.++|.+||++|+. |.++-+||++.+.
T Consensus 360 vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gV 398 (459)
T KOG0610|consen 360 VSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGV 398 (459)
T ss_pred chhHHHHHHHHHhccChhhhhccccchHHhhcCccccCC
Confidence 4678999999999999999999 9999999999873
No 148
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=94.05 E-value=0.014 Score=46.26 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=29.1
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
..+.+.+-++|..||.+|+||.++++|+|+...|
T Consensus 335 e~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P 368 (419)
T KOG0663|consen 335 EQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETP 368 (419)
T ss_pred hhHHHHHHHHhccCccccccHHHhhcccccccCC
Confidence 3556677789999999999999999999997744
No 149
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=94.05 E-value=0.018 Score=45.00 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=29.9
Q ss_pred CcchhhhhhhhhccCCCcccc-----hhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~-----~~~~~~~pw~~~~~ 36 (205)
+..+++.+.+||..||.+|++ +.+++.|||+....
T Consensus 222 ~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~ 261 (291)
T cd05612 222 DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVD 261 (291)
T ss_pred CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCCC
Confidence 345678889999999999995 99999999997643
No 150
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=0.024 Score=47.93 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=29.6
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcc
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~ 33 (205)
+..|++.|-+||++||..|+|+.+++.|+|+.
T Consensus 242 s~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~ 273 (592)
T KOG0575|consen 242 SAEAKDLIRKLLRPNPSERPSLDEVLDHPFFK 273 (592)
T ss_pred CHHHHHHHHHHhcCCcccCCCHHHHhcCHhhh
Confidence 45789999999999999999999999999993
No 151
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=93.98 E-value=0.019 Score=48.80 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhc
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~ 32 (205)
++-.|++.+-+||..||.+|+++.++..|||+
T Consensus 535 vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~ 566 (612)
T KOG0603|consen 535 VSDEAKDLLQQLLQVDPALRLGADEIGAHPWF 566 (612)
T ss_pred cCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence 35678889999999999999999999999999
No 152
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=93.87 E-value=0.023 Score=45.45 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=28.4
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
...+.+.+||..||.+|+++.+++.|||+...
T Consensus 272 ~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~ 303 (342)
T cd07879 272 QAVDLLEKMLELDVDKRLTATEALEHPYFDSF 303 (342)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHhcCcchhhc
Confidence 35678889999999999999999999999763
No 153
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=93.84 E-value=0.025 Score=45.32 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=28.3
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+...+.+.+||..||.+|+++.+++.|||+..
T Consensus 274 ~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~ 305 (345)
T cd07877 274 PLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 305 (345)
T ss_pred HHHHHHHHHHcCCChhhcCCHHHHhcChhhhh
Confidence 44567788899999999999999999999975
No 154
>PLN02952 phosphoinositide phospholipase C
Probab=93.79 E-value=0.53 Score=40.72 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 118 FLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 118 ~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
.+..+|..+..++ +.++.++|..++....
T Consensus 39 ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 39 DVKDVFCKFSVGG-GHMGADQLRRFLVLHQ 67 (599)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 3444454443322 3455555554444444
No 155
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.77 E-value=0.38 Score=34.45 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=55.1
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHH--HHHHHHhcCC--CCCcccHHHHHHHHHhhCC---------
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFL--DRVFDLFDEK--KNGVIDFEEFVHALNVFHP--------- 148 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~--~~if~~~d~~--~~g~I~~~eF~~~~~~~~~--------- 148 (205)
|.+-..-+|+ |+||.|.+-|--..+...+.+.-..+ --++...=.- ..+-+.---|.-.+..+++
T Consensus 9 LQqHvaFFDr--d~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 9 LQQHVAFFDR--DKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HhhhhceeCC--CCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3444445566 69999999998888877666543221 1111111000 0111100001101111110
Q ss_pred ----CCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 149 ----YAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 149 ----~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
..-..++.+.+|..|+..+.+.+|..|+.++++
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~ 123 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLK 123 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 122368899999999999999999999999987
No 156
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=0.11 Score=45.47 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 79 LEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 79 i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
-....+.|+.+|. ..+|+++-..-+.+|.+.++... .+..|+..-|.|+||.++.+||+-.|..+
T Consensus 194 klKY~QlFNa~Dk--trsG~Lsg~qaR~aL~qS~Lpq~-~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 194 KLKYRQLFNALDK--TRSGYLSGQQARSALGQSGLPQN-QLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhHHHHHhhhccc--ccccccccHHHHHHHHhcCCchh-hHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 3446788999998 58999999999999876555433 35779999999999999999999877654
No 157
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.76 E-value=0.029 Score=48.30 Aligned_cols=32 Identities=6% Similarity=-0.052 Sum_probs=28.1
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
++-.+.+.+||.+||..|+++.+++.|||+.+
T Consensus 263 ~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~ 294 (1187)
T KOG0579|consen 263 RSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQN 294 (1187)
T ss_pred hHHHHHHHHHHhcCCccCCCHHHHhhCccccc
Confidence 44567778899999999999999999999964
No 158
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=93.71 E-value=0.022 Score=45.32 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.1
Q ss_pred CcchhhhhhhhhccCCCcccc------hhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT------FGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~------~~~~~~~pw~~~~ 35 (205)
+..+++.+.+||.+||.+|++ +.+++.|||+...
T Consensus 229 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~ 268 (329)
T cd05588 229 SVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNI 268 (329)
T ss_pred CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence 345678899999999999997 6899999999764
No 159
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=93.65 E-value=0.031 Score=44.51 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=28.0
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.....+.+||..||.+|+|+.+++.|||+..
T Consensus 266 ~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~ 297 (332)
T cd07857 266 PLALDLLEKLLAFDPTKRISVEEALEHPYLAI 297 (332)
T ss_pred HHHHHHHHHHccCCcccCCCHHHHhcChhhhh
Confidence 35567788899999999999999999999854
No 160
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=93.60 E-value=0.024 Score=45.16 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=29.1
Q ss_pred CcchhhhhhhhhccCCCcccc-----hhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~-----~~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||..||.+|++ +.+++.|||+...
T Consensus 239 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~ 277 (329)
T PTZ00263 239 DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGA 277 (329)
T ss_pred CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCC
Confidence 445678888999999999997 7999999999763
No 161
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=93.59 E-value=0.024 Score=44.93 Aligned_cols=34 Identities=9% Similarity=-0.024 Sum_probs=29.7
Q ss_pred CcchhhhhhhhhccCCCcccch-----hhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~-----~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||.+||.+|+++ .+++.|||+...
T Consensus 220 ~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~ 258 (318)
T cd05570 220 SKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREI 258 (318)
T ss_pred CHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence 4456788889999999999999 999999999763
No 162
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=93.58 E-value=0.023 Score=45.04 Aligned_cols=35 Identities=6% Similarity=-0.068 Sum_probs=29.8
Q ss_pred CcchhhhhhhhhccCCCcccch------hhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTF------GERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~------~~~~~~pw~~~~~ 36 (205)
+.++.+.+.+||.+||.+|+++ .+++.|||+....
T Consensus 220 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~ 260 (320)
T cd05590 220 SQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELD 260 (320)
T ss_pred CHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCC
Confidence 3456778899999999999998 8899999997643
No 163
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.43 E-value=0.042 Score=42.06 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=32.6
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchHHHHHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIAIIEA 40 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~~~ 40 (205)
+..|++.+=+||..||++|+.+.+++.|.|+-.-+.+.+
T Consensus 288 d~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~pqa 326 (376)
T KOG0669|consen 288 DDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDPMPQA 326 (376)
T ss_pred ChhHHHHHHHHhccCcccCcchHhhhchhhhhcCCcchh
Confidence 357888999999999999999999999999965544433
No 164
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=93.29 E-value=0.03 Score=44.56 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=28.9
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||..||.+|+ ++.++++|||+...
T Consensus 235 ~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~ 273 (332)
T cd05614 235 GPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGL 273 (332)
T ss_pred CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence 34567788899999999999 78899999999764
No 165
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=93.18 E-value=0.031 Score=44.30 Aligned_cols=34 Identities=9% Similarity=-0.101 Sum_probs=29.6
Q ss_pred CcchhhhhhhhhccCCCccc-------chhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-------TFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-------~~~~~~~~pw~~~~ 35 (205)
++...+.+.+||.+||.+|+ ++.+++.|||+...
T Consensus 220 ~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~ 260 (321)
T cd05591 220 SKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEI 260 (321)
T ss_pred CHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCCC
Confidence 45667888899999999999 89999999999764
No 166
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.97 E-value=0.046 Score=45.21 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=29.3
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
++.+...+-+||.-||.+|+||.++++||++..
T Consensus 264 s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~ 296 (538)
T KOG0661|consen 264 SSEAASLIERLLAWDPDKRPTASQALQHPFFQV 296 (538)
T ss_pred CHHHHHHHHHHhcCCCccCccHHHHhcCccccc
Confidence 456778888999999999999999999999954
No 167
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=92.97 E-value=0.034 Score=43.89 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=29.1
Q ss_pred CcchhhhhhhhhccCCCccc---chhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSL---TFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~---~~~~~~~~pw~~~~ 35 (205)
++.+.+.+.+||..||.+|+ ++.+++.|||+...
T Consensus 217 ~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~ 253 (312)
T cd05585 217 DRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQL 253 (312)
T ss_pred CHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence 45677888999999999998 47899999999864
No 168
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=92.90 E-value=0.05 Score=43.17 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=30.2
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+..|++.+-++|.++|..|.||.+++.|||+...
T Consensus 249 s~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~ 282 (313)
T KOG0198|consen 249 SDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQN 282 (313)
T ss_pred CHHHHHHHHHHhhcCcccCcCHHHHhhChhhhcc
Confidence 4568888889999999999999999999999763
No 169
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=92.68 E-value=0.038 Score=44.00 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=29.7
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~~ 36 (205)
+....+.+.+||.+||.+|+ ++.+++.|||+.+..
T Consensus 219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~ 258 (328)
T cd05593 219 SADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVN 258 (328)
T ss_pred CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCCC
Confidence 34567788899999999998 899999999997643
No 170
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=92.44 E-value=0.06 Score=42.88 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=27.7
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
...+.+.+|+..+|.+|+++.+++.|||+..
T Consensus 270 ~l~~li~~~l~~~P~~Rps~~~il~~~~~~~ 300 (337)
T cd07852 270 DALDLLKKLLVFNPNKRLTAEEALEHPYVAQ 300 (337)
T ss_pred HHHHHHHHhccCCcccccCHHHHhhChhhhh
Confidence 4466788899999999999999999999976
No 171
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=92.38 E-value=0.048 Score=43.17 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=29.1
Q ss_pred cchhhhhhhhhccCCCcccchh-hhhhhhhcchHH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFG-ERICAACIPLIA 36 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~-~~~~~pw~~~~~ 36 (205)
..+.+.+.+||.+||.+|+++. ++..|||+....
T Consensus 221 ~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~~ 255 (316)
T cd05619 221 REAKDILVKLFVREPERRLGVKGDIRQHPFFREID 255 (316)
T ss_pred HHHHHHHHHHhccCHhhcCCChHHHHcCcccCCCC
Confidence 4567888999999999999996 899999997743
No 172
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=92.32 E-value=0.66 Score=39.02 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCC--CChHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPY--APIEDKIDFAFRLYDLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~--~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 182 (205)
...-|...| +++|+|+..|...++...... ....+.++.+....+.|.+|.|++++|..++-.
T Consensus 21 l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 21 LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 467899999 999999999999888766521 234688999999999999999999999997643
No 173
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=92.28 E-value=0.042 Score=43.60 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=29.6
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~~ 36 (205)
++...+.+.+||.+||.+|+ ++.+++.|||+....
T Consensus 220 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~ 259 (325)
T cd05594 220 SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIV 259 (325)
T ss_pred CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCCC
Confidence 34566778889999999998 899999999998643
No 174
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=92.28 E-value=0.054 Score=43.96 Aligned_cols=34 Identities=6% Similarity=-0.169 Sum_probs=29.3
Q ss_pred CcchhhhhhhhhccCCCc--ccchhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSS--SLTFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~--r~~~~~~~~~pw~~~~ 35 (205)
++.+++.+.+||..+|.+ |+++.+++.|||+...
T Consensus 275 s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~~ 310 (370)
T cd05596 275 SKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKND 310 (370)
T ss_pred CHHHHHHHHHHccChhhccCCCCHHHHhcCcccCCC
Confidence 456778889999988887 9999999999999763
No 175
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=92.17 E-value=0.05 Score=43.20 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=30.1
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~~ 36 (205)
+..+.+.+.+||.+||.+|+ ++.++++|||+.+..
T Consensus 219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~ 258 (323)
T cd05595 219 SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSIN 258 (323)
T ss_pred CHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCCC
Confidence 45567788899999999999 899999999998744
No 176
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=92.15 E-value=0.065 Score=42.66 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=27.6
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+..+.+.+||..+|.+|+++.+++.|||+..
T Consensus 263 ~~~~li~~~l~~~P~~R~t~~ell~~~~~~~ 293 (328)
T cd07856 263 SAIDLLEKMLVFDPQKRISAAEALAHPYLAP 293 (328)
T ss_pred HHHHHHHHHcCCChhhCCCHHHHhcCCcccc
Confidence 4567888899999999999999999999953
No 177
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=92.13 E-value=0.057 Score=42.91 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=26.3
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+.....+.+||. +|.+|+++.+++.|||+...
T Consensus 238 ~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~ 269 (330)
T cd05601 238 SDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKI 269 (330)
T ss_pred HHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence 445566677886 99999999999999999763
No 178
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=92.11 E-value=0.05 Score=43.05 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=27.7
Q ss_pred cchhhhhhhhhccCCCcccch-hhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLTF-GERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~-~~~~~~pw~~~~ 35 (205)
..+.+.+.+||..||.+|+++ .+++.|||+...
T Consensus 221 ~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~ 254 (316)
T cd05620 221 KESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI 254 (316)
T ss_pred HHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence 456677889999999999998 478889999764
No 179
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=92.04 E-value=0.053 Score=43.51 Aligned_cols=35 Identities=9% Similarity=-0.023 Sum_probs=29.9
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~~ 36 (205)
++.+.+.+.+||..||.+|+ ++.+++.|||+....
T Consensus 252 ~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~ 291 (340)
T PTZ00426 252 DNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNID 291 (340)
T ss_pred CHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence 34567888999999999997 899999999998643
No 180
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=91.87 E-value=0.06 Score=42.78 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=29.0
Q ss_pred CcchhhhhhhhhccCCCccc----chhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSL----TFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~----~~~~~~~~pw~~~~ 35 (205)
++++++.+.+||..||.+|+ ++.+++.|||+...
T Consensus 222 ~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~ 259 (330)
T cd05586 222 SDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADI 259 (330)
T ss_pred CHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence 45567788899999999998 68999999999763
No 181
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=91.64 E-value=0.095 Score=41.34 Aligned_cols=33 Identities=6% Similarity=-0.214 Sum_probs=28.0
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
+.+..+.+||..+|..|+++.+++.|||+...+
T Consensus 248 ~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~ 280 (313)
T cd06633 248 SFRGFVDYCLQKIPQERPASAELLRHDFVRRDR 280 (313)
T ss_pred HHHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence 355677789999999999999999999996533
No 182
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=91.53 E-value=0.061 Score=42.77 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=29.1
Q ss_pred CcchhhhhhhhhccCCCcccch------hhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTF------GERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~------~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||.+||.+|+++ .++..|||+...
T Consensus 227 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~ 266 (327)
T cd05617 227 SVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSI 266 (327)
T ss_pred CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCC
Confidence 4567888999999999999986 599999999774
No 183
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.52 E-value=0.53 Score=40.01 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCC-CCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC
Q 028692 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAP-YGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA 150 (205)
Q Consensus 72 ~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~ 150 (205)
..+++.++......|..+|. ++.|+++..+.+.+|...+ ......+.++.+..|.+-+|.+...||..++.......
T Consensus 585 i~~~~~~~~~~~~rf~~lD~--~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDA--DKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred cccCHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 44688889999999999998 6899999999999998766 44566688999999999899999999999998887433
Q ss_pred C
Q 028692 151 P 151 (205)
Q Consensus 151 ~ 151 (205)
.
T Consensus 663 ~ 663 (680)
T KOG0042|consen 663 T 663 (680)
T ss_pred h
Confidence 3
No 184
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=91.50 E-value=0.066 Score=42.64 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=28.0
Q ss_pred cchhhhhhhhhccCCCcccch------hhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLTF------GERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~------~~~~~~pw~~~~ 35 (205)
..+.+.+.+||.+||.+|+++ .+++.|||+...
T Consensus 230 ~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~ 268 (329)
T cd05618 230 VKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV 268 (329)
T ss_pred HHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence 445678889999999999985 699999999764
No 185
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=91.34 E-value=0.1 Score=41.07 Aligned_cols=31 Identities=3% Similarity=-0.268 Sum_probs=27.4
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+....+.+||..+|.+|+++.+++.|||+..
T Consensus 242 ~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~ 272 (308)
T cd06634 242 YFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 272 (308)
T ss_pred HHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence 3556778899999999999999999999965
No 186
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=91.30 E-value=0.072 Score=42.22 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=29.6
Q ss_pred CcchhhhhhhhhccCCCcccch----hhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTF----GERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~----~~~~~~pw~~~~~ 36 (205)
+.++.+.+.+||.+||.+|+++ .+++.|||+....
T Consensus 220 ~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~~ 258 (323)
T cd05575 220 SVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSIN 258 (323)
T ss_pred CHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCCC
Confidence 4566788899999999999998 5999999997643
No 187
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=91.23 E-value=0.093 Score=41.19 Aligned_cols=31 Identities=3% Similarity=-0.228 Sum_probs=27.1
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
....+.+|+..+|.+|+++.+++.|||+...
T Consensus 243 ~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~ 273 (307)
T cd06607 243 FRNFVDSCLQKIPQDRPSSEELLKHRFVLRE 273 (307)
T ss_pred HHHHHHHHhcCChhhCcCHHHHhcChhhccc
Confidence 4567788999999999999999999999653
No 188
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=91.22 E-value=0.07 Score=42.32 Aligned_cols=34 Identities=12% Similarity=-0.073 Sum_probs=28.9
Q ss_pred CcchhhhhhhhhccCCCcccch-----hhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~-----~~~~~~pw~~~~ 35 (205)
++++.+.+.+||.+||.+|+++ .+++.|||+...
T Consensus 225 ~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~ 263 (324)
T cd05587 225 SKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRI 263 (324)
T ss_pred CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence 4556778889999999999987 799999999764
No 189
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=91.13 E-value=0.097 Score=44.08 Aligned_cols=34 Identities=15% Similarity=0.021 Sum_probs=30.5
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+..|.+++.++|.+||+.|+|+.|+-.||++.+.
T Consensus 311 p~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~V 344 (604)
T KOG0592|consen 311 PEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGV 344 (604)
T ss_pred CHHHHHHHHHHHccCccccccHHHHhhCcccccC
Confidence 3568899999999999999999999999999663
No 190
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.05 E-value=0.12 Score=40.57 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHHHHHhhhcccccCCCCCHHHHHHH---HhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 82 LSELYKNLSCSIIKDGLIHKEELQVA---LFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 82 l~~~f~~~d~~~~~~g~i~~~ef~~~---l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
+.=.|..+|. |.++.|+..|+... +.. ......-.+.+|+..|.|+|..|++.|+..++..-.
T Consensus 335 v~w~F~qLdk--N~nn~i~rrEwKpFK~~l~k-~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 335 VHWYFNQLDK--NSNNDIERREWKPFKRVLLK-KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeeeeecc--cccCccchhhcchHHHHHHh-hccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 3345888888 68999999996653 321 111223368999999999999999999999876544
No 191
>PLN02952 phosphoinositide phospholipase C
Probab=91.05 E-value=3.2 Score=36.07 Aligned_cols=66 Identities=6% Similarity=0.042 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHhhCC----CCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCC---CChHHHHHHHHHh
Q 028692 55 VQKCRFDVGDLARLAAESR----FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY---GENLFLDRVFDLF 126 (205)
Q Consensus 55 ~~~~~l~~~~~~~l~~~~~----~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~if~~~ 126 (205)
.+.+.+++.++..+.+... ..+.++..++..|. . +.+.++.++|...|..... .....+..++..+
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~---~---~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~ 84 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFS---V---GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEV 84 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHh---C---CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 3456888888876655432 24566666666553 2 4568999999998864222 1233466677654
No 192
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=90.96 E-value=0.094 Score=41.73 Aligned_cols=34 Identities=3% Similarity=-0.097 Sum_probs=29.5
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+.++.+.+.+||..++.+|.++.+++.|||+...
T Consensus 230 s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~ 263 (333)
T cd05600 230 SDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEV 263 (333)
T ss_pred CHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCC
Confidence 3456778888999999999999999999999864
No 193
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=90.95 E-value=0.085 Score=41.84 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=29.6
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~ 35 (205)
+....+.+.+||.++|.+|+ ++.+++.|||+...
T Consensus 224 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~ 262 (323)
T cd05584 224 TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV 262 (323)
T ss_pred CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence 34567888899999999999 89999999999764
No 194
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=90.86 E-value=0.093 Score=41.95 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=27.8
Q ss_pred CcchhhhhhhhhccCCCcccc-hhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT-FGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~-~~~~~~~pw~~~~~ 36 (205)
+..+...+.+||. ||..|++ +.+++.|||+....
T Consensus 258 ~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~ 292 (350)
T cd05573 258 SPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGID 292 (350)
T ss_pred CHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCC
Confidence 3455677777886 9999999 99999999997643
No 195
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.84 E-value=0.54 Score=36.84 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=49.0
Q ss_pred ccCCCCCHHHHHHHHhc----C--CCCChHH-----------HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHH
Q 028692 94 IKDGLIHKEELQVALFQ----A--PYGENLF-----------LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKI 156 (205)
Q Consensus 94 ~~~g~i~~~ef~~~l~~----~--~~~~~~~-----------~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~ 156 (205)
|++|+++-.|+...+.. + +...... ..-+++.+|+|+|..|+.+||++..-... .+.+.+.+
T Consensus 256 NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke-f~~p~e~W 334 (442)
T KOG3866|consen 256 NSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE-FNPPKEEW 334 (442)
T ss_pred CCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc-cCCcchhh
Confidence 68999999998876532 1 1111111 45688899999999999999998765544 33333333
Q ss_pred HHHHHhhCCCCCCcccHHHHHHH
Q 028692 157 DFAFRLYDLRQTGYIEREEVKQM 179 (205)
Q Consensus 157 ~~~F~~~D~~~~G~I~~~e~~~~ 179 (205)
.. .+....-|-+|+++.
T Consensus 335 Et------l~q~~~yTeEEL~~f 351 (442)
T KOG3866|consen 335 ET------LGQKKVYTEEELQQF 351 (442)
T ss_pred hh------hcccccccHHHHHHH
Confidence 31 233445566666554
No 196
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=90.49 E-value=0.12 Score=43.09 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=30.1
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhc
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~ 32 (205)
++++|...+-.||..||++|.||.+++.|+|+
T Consensus 372 ~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF 403 (560)
T KOG0600|consen 372 FPASALDLLEKLLSLDPDKRGTASSALQSEYF 403 (560)
T ss_pred CCHHHHHHHHHHhccCccccccHHHHhcCccc
Confidence 36789999999999999999999999999999
No 197
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.44 E-value=0.69 Score=32.78 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCC----ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG----ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 80 ~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~----~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
+.+|..|-.+.. .+...++...|..++...+.- ..-.+..+|..+-..+...|+|++|..++..+.
T Consensus 2 ~~~F~~f~~fG~--~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGK--KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSST--STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 345555555543 245579999999998754432 233488999998777777899999999886553
No 198
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=90.10 E-value=0.12 Score=45.49 Aligned_cols=32 Identities=9% Similarity=-0.014 Sum_probs=28.1
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
.+...+.+||..||.+|+++.+++.|||+...
T Consensus 609 ~~~~~l~~lL~~dP~~R~ta~e~l~h~~~~~~ 640 (669)
T cd05610 609 NAQNAIEILLTMDPTKRAGLKELKQHPLFHGV 640 (669)
T ss_pred HHHHHHHHHcccChhHCcCHHHHHhCHhhcCC
Confidence 45667788999999999999999999999764
No 199
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=89.47 E-value=0.14 Score=40.65 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=28.8
Q ss_pred CcchhhhhhhhhccCCCccc-----chhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~ 35 (205)
+....+.+.+||.+||.+|+ ++.+++.|||+...
T Consensus 225 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~ 263 (324)
T cd05589 225 SREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI 263 (324)
T ss_pred CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCC
Confidence 34566788999999999999 68999999999764
No 200
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=89.38 E-value=0.13 Score=39.95 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=29.2
Q ss_pred cchhhhhhhhhccCCCccc-----chhhhhhhhhcchHH
Q 028692 3 SSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~-----~~~~~~~~pw~~~~~ 36 (205)
+.....+.+||..||.+|+ ++.+++.|||+....
T Consensus 223 ~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~ 261 (290)
T cd05580 223 PDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGID 261 (290)
T ss_pred HHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence 4556788889999999999 999999999997644
No 201
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=89.30 E-value=0.18 Score=39.68 Aligned_cols=30 Identities=7% Similarity=0.030 Sum_probs=27.0
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.+...++|..||++|+++.|++.||++.+
T Consensus 260 ~ld~~k~cL~~dP~~R~sc~qll~H~yFd~ 289 (396)
T KOG0593|consen 260 LLDLLKKCLKMDPDDRLSCEQLLHHPYFDG 289 (396)
T ss_pred HHHHHHHHhcCCccccccHHHHhcChHHHH
Confidence 567788899999999999999999999954
No 202
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=89.29 E-value=0.13 Score=40.62 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=28.3
Q ss_pred CcchhhhhhhhhccCCCcccc-----hhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~-----~~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||.+||.+|++ +.+++.|||+...
T Consensus 222 ~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~ 260 (318)
T cd05582 222 SPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTI 260 (318)
T ss_pred CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCC
Confidence 345677888899999999999 5669999999764
No 203
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=89.29 E-value=0.17 Score=40.48 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=31.6
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+++++.+.+.++|.++|.+|+++.+++.||++...
T Consensus 278 ~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdel 312 (364)
T KOG0658|consen 278 LPPDALDLLSKLLQYSPSKRLSALEALAHPFFDEL 312 (364)
T ss_pred CCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHh
Confidence 46788999999999999999999999999998653
No 204
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=88.97 E-value=0.15 Score=41.14 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=27.0
Q ss_pred CcchhhhhhhhhccCCCcccc---hhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT---FGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~---~~~~~~~pw~~~~ 35 (205)
++.+++.+.+||. +|.+|++ +.+++.|||+...
T Consensus 267 s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~ 302 (364)
T cd05599 267 SPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGV 302 (364)
T ss_pred CHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence 3456677777875 8999998 9999999999764
No 205
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.91 E-value=0.23 Score=41.01 Aligned_cols=28 Identities=14% Similarity=-0.049 Sum_probs=24.5
Q ss_pred hhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 7 RSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 7 ~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
..+-.+|++||++|+||.+.+.|||+..
T Consensus 271 e~i~~CL~kDP~kRptAskLlkh~FFk~ 298 (516)
T KOG0582|consen 271 EMIALCLVKDPSKRPTASKLLKHAFFKK 298 (516)
T ss_pred HHHHHHhhcCcccCCCHHHHhccHHHhh
Confidence 4556699999999999999999999954
No 206
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=88.72 E-value=0.23 Score=42.13 Aligned_cols=43 Identities=7% Similarity=0.024 Sum_probs=32.2
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcchHHHHHHHHHHhhc
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPLIAIIEAVVITVAS 47 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~~~~~~~~~~ 47 (205)
+-...+.||..||.+|.++.++++||++...+++......+..
T Consensus 603 li~~mK~CL~rdPkkR~si~eLLqhpFl~~~~i~~~~m~~~~~ 645 (677)
T KOG0596|consen 603 LIDVMKCCLARDPKKRWSIPELLQHPFLQIQPIPVEQMAKLTT 645 (677)
T ss_pred HHHHHHHHHhcCcccCCCcHHHhcCcccccccccchHHHHHHH
Confidence 3456788999999999999999999999775544433333333
No 207
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.34 E-value=0.21 Score=44.95 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=27.0
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+...+.+||.++|.+|+++.++++|||+...
T Consensus 241 ~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~ 271 (793)
T PLN00181 241 EASFCLWLLHPEPSCRPSMSELLQSEFINEP 271 (793)
T ss_pred HHHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence 4566778999999999999999999999753
No 208
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=88.03 E-value=0.18 Score=40.04 Aligned_cols=33 Identities=12% Similarity=-0.034 Sum_probs=28.1
Q ss_pred cchhhhhhhhhccCCCcccchh----hhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFG----ERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~----~~~~~pw~~~~ 35 (205)
.++.+.+.+||.++|.+|+++. +++.|||+...
T Consensus 221 ~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~ 257 (325)
T cd05604 221 LTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESL 257 (325)
T ss_pred HHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence 4566788999999999999885 89999999764
No 209
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=87.74 E-value=0.26 Score=38.86 Aligned_cols=31 Identities=6% Similarity=-0.210 Sum_probs=26.9
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
..++.+.+|+..+|.+|+++.+++.|||+..
T Consensus 252 ~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~ 282 (317)
T cd06635 252 YFRNFVDSCLQKIPQDRPTSEELLKHMFVLR 282 (317)
T ss_pred HHHHHHHHHccCCcccCcCHHHHHhChhhhc
Confidence 3566778899999999999999999999843
No 210
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=87.69 E-value=0.26 Score=43.66 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=27.8
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhc
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACI 32 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~ 32 (205)
.|.+.|-+||..+|..|++|.+++.||.+
T Consensus 742 eA~dLI~~ml~~dP~~RPsa~~VL~HPlF 770 (903)
T KOG1027|consen 742 EAKDLISRMLNPDPQLRPSATDVLNHPLF 770 (903)
T ss_pred HHHHHHHHhcCCCcccCCCHHHHhCCCcc
Confidence 68899999999999999999999999988
No 211
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=87.49 E-value=2.5 Score=37.29 Aligned_cols=65 Identities=28% Similarity=0.408 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 116 NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 116 ~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
..++..+|+..|.+++|.+++.+-..+...+. ....+..++.+|+..|..++|.+...++.+...
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHH
Confidence 45689999999999999999999888777665 345667888999999999999999999988754
No 212
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=86.69 E-value=1.7 Score=37.58 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 028692 134 IDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAI 183 (205)
Q Consensus 134 I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 183 (205)
|+|..|...+..+.+......-+.++|+.+|.+++|.|++.+|...|..+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH
Confidence 56666766666555444455668899999999999999999999988654
No 213
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=86.55 E-value=0.24 Score=39.25 Aligned_cols=34 Identities=12% Similarity=-0.063 Sum_probs=28.7
Q ss_pred CcchhhhhhhhhccCCCcccch-----hhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~-----~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||.+||.+|+++ .++..|||+...
T Consensus 225 s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~ 263 (323)
T cd05616 225 SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI 263 (323)
T ss_pred CHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCC
Confidence 4566778899999999999985 788999999764
No 214
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=86.44 E-value=0.31 Score=39.61 Aligned_cols=33 Identities=6% Similarity=-0.168 Sum_probs=26.0
Q ss_pred CcchhhhhhhhhccCCCc--ccchhhhhhhhhcch
Q 028692 2 DSSANRSFLRAFDYDGSS--SLTFGERICAACIPL 34 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~--r~~~~~~~~~pw~~~ 34 (205)
+..+++.+.++|..++.+ |+++.++++|||+..
T Consensus 275 s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~ 309 (370)
T cd05621 275 SKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKN 309 (370)
T ss_pred CHHHHHHHHHHccCchhccCCCCHHHHhcCcccCC
Confidence 445678888888755543 889999999999976
No 215
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=86.30 E-value=0.3 Score=38.22 Aligned_cols=36 Identities=11% Similarity=-0.147 Sum_probs=29.8
Q ss_pred chhhhhhhhhccCCCcccc---hhhhhhhhhcchHHHHH
Q 028692 4 SANRSFLRAFDYDGSSSLT---FGERICAACIPLIAIIE 39 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~---~~~~~~~pw~~~~~~~~ 39 (205)
.....+.+|+..+|..|++ +.+++.|||+.......
T Consensus 245 ~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~~~~ 283 (305)
T cd05609 245 DAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLDWNG 283 (305)
T ss_pred HHHHHHHHHhccChhhccCccCHHHHHhCccccCCCHHH
Confidence 3567888899999999998 68889999998765444
No 216
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=86.22 E-value=0.22 Score=41.90 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=29.2
Q ss_pred CcchhhhhhhhhccCCCcccc---hhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT---FGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~---~~~~~~~pw~~~~ 35 (205)
+..|++.|+|+|+ |+.+|+. +.|+-.|||+.+.
T Consensus 416 s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v 451 (550)
T KOG0605|consen 416 SDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGV 451 (550)
T ss_pred cHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccC
Confidence 4679999999999 9999997 8888999999873
No 217
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=86.00 E-value=0.28 Score=38.78 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=27.2
Q ss_pred cchhhhhhhhhccCCCcccchh-hhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFG-ERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~-~~~~~pw~~~~ 35 (205)
..+.+.+.+||..||.+|+++. +++.|||+...
T Consensus 221 ~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~ 254 (316)
T cd05592 221 KEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGI 254 (316)
T ss_pred HHHHHHHHHHccCCHHHcCCChHHHHcCcccCCC
Confidence 3456778889999999999875 77899999764
No 218
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.91 E-value=5.8 Score=27.09 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=39.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc--------CCCCCh-H----------HHHHHHHH
Q 028692 65 LARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ--------APYGEN-L----------FLDRVFDL 125 (205)
Q Consensus 65 ~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~--------~~~~~~-~----------~~~~if~~ 125 (205)
++.+.+...+..=++..+.++|+...-+...+..++..++..++.. .+...+ + .+.+++..
T Consensus 26 LR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~v 105 (127)
T PF09068_consen 26 LRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNV 105 (127)
T ss_dssp HHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 4445555555555566666667666553122456788777776521 121111 1 14566666
Q ss_pred hcCCCCCcccHHHHHHHHHh
Q 028692 126 FDEKKNGVIDFEEFVHALNV 145 (205)
Q Consensus 126 ~d~~~~g~I~~~eF~~~~~~ 145 (205)
||.+++|.|..-.|..++..
T Consensus 106 yD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 106 YDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp H-TT--SEEEHHHHHHHHHH
T ss_pred hCCCCCCeeehhHHHHHHHH
Confidence 66666666666666665544
No 219
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=85.56 E-value=5.6 Score=35.23 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=73.2
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc--------CCC--C----ChHHHHHHHHHhcCCCCC
Q 028692 67 RLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ--------APY--G----ENLFLDRVFDLFDEKKNG 132 (205)
Q Consensus 67 ~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~--------~~~--~----~~~~~~~if~~~d~~~~g 132 (205)
.+.+...+.--.+.-+.++|++.+.. .+.-.++..+...+|.. .+. . -......+++.||...+|
T Consensus 407 ~LQK~l~ldlv~ltl~l~if~~h~l~-~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g 485 (966)
T KOG4286|consen 407 RLQKALCLDLLSLSLALDALDQHNLK-QNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTG 485 (966)
T ss_pred HHHHHHHhccccHHHHHHHHHHhccc-ccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCc
Confidence 33333333333344566777777552 23445666666655421 111 1 122268999999999999
Q ss_pred cccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 133 VIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 133 ~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
.|..-+|...+..++ ....+++++.+|...-..+.-++ ...|..+|.
T Consensus 486 ~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~ 532 (966)
T KOG4286|consen 486 RIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLH 532 (966)
T ss_pred ceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHH
Confidence 999999999999999 67788999999999966665554 555555443
No 220
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=85.52 E-value=0.39 Score=40.78 Aligned_cols=32 Identities=6% Similarity=-0.027 Sum_probs=28.3
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.....+.+||..||.+|+++.+++.|||+..
T Consensus 271 ~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~ 302 (496)
T PTZ00283 271 PEMQEIVTALLSSDPKRRPSSSKLLNMPICKL 302 (496)
T ss_pred HHHHHHHHHHcccChhhCcCHHHHHhCHHHHH
Confidence 45667788899999999999999999999865
No 221
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=85.41 E-value=0.32 Score=38.58 Aligned_cols=34 Identities=15% Similarity=-0.066 Sum_probs=28.2
Q ss_pred CcchhhhhhhhhccCCCcccch-----hhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~-----~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||.++|.+|+++ .++..|||+...
T Consensus 225 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~ 263 (323)
T cd05615 225 SKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRI 263 (323)
T ss_pred CHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCC
Confidence 4556778889999999999985 678999999764
No 222
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=84.97 E-value=0.34 Score=39.29 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=25.0
Q ss_pred cchhhhhhhhhccCCCcc---cchhhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSS---LTFGERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r---~~~~~~~~~pw~~~~ 35 (205)
..+++.+.+||. ++..| .++.+++.|||+.+.
T Consensus 277 ~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~ 311 (377)
T cd05629 277 VEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGV 311 (377)
T ss_pred HHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence 456677888887 66665 499999999999763
No 223
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=84.87 E-value=0.52 Score=43.69 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=28.0
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcc
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~ 33 (205)
+-+++.+..|++.||++|+||.+++++.|+|
T Consensus 845 ~~e~slI~~Ll~hdP~kRPtA~eLL~s~llp 875 (1351)
T KOG1035|consen 845 PEEASLIRWLLSHDPSKRPTATELLNSELLP 875 (1351)
T ss_pred hHHHHHHHHHhcCCCccCCCHHHHhhccCCC
Confidence 4466778889999999999999999999998
No 224
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=84.67 E-value=0.35 Score=39.34 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=27.1
Q ss_pred CcchhhhhhhhhccCCCcccc---hhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT---FGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~---~~~~~~~pw~~~~~ 36 (205)
++++.+.+.+|+ .+|.+|++ +.+++.|||+....
T Consensus 276 s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~ 312 (382)
T cd05625 276 SPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTID 312 (382)
T ss_pred CHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcC
Confidence 456677777765 69999997 99999999997744
No 225
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=84.65 E-value=0.45 Score=37.89 Aligned_cols=33 Identities=9% Similarity=-0.103 Sum_probs=24.5
Q ss_pred cchhhhhhhhhccCCC--cccchhhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGS--SSLTFGERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~--~r~~~~~~~~~pw~~~~ 35 (205)
..++..+.+||..++. .|.++.+++.|||+...
T Consensus 238 ~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~ 272 (331)
T cd05597 238 EEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGI 272 (331)
T ss_pred HHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCC
Confidence 4556667777765444 48899999999999764
No 226
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=84.23 E-value=0.35 Score=38.31 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=28.9
Q ss_pred CcchhhhhhhhhccCCCcccchh----hhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFG----ERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~----~~~~~pw~~~~ 35 (205)
+.++.+.+.+||.+||.+|+++. ++.+|||+...
T Consensus 220 ~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~ 257 (325)
T cd05602 220 TNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPI 257 (325)
T ss_pred CHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCCC
Confidence 45677888999999999999987 78899999653
No 227
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=84.13 E-value=0.38 Score=38.99 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=26.0
Q ss_pred cchhhhhhhhhccCCCccc---chhhhhhhhhcchHH
Q 028692 3 SSANRSFLRAFDYDGSSSL---TFGERICAACIPLIA 36 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~---~~~~~~~~pw~~~~~ 36 (205)
+.+.+.+.+|+ .+|.+|+ ++.+++.|||+....
T Consensus 273 ~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~~ 308 (376)
T cd05598 273 REASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGID 308 (376)
T ss_pred HHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCCC
Confidence 34556666654 6999999 999999999998744
No 228
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=84.07 E-value=0.48 Score=39.96 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=28.1
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
......+.+||.+||.+|+++.+++.|||+..
T Consensus 297 ~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~ 328 (478)
T PTZ00267 297 SGMKALLDPLLSKNPALRPTTQQLLHTEFLKY 328 (478)
T ss_pred HHHHHHHHHHhccChhhCcCHHHHHhCHHHHH
Confidence 34567788899999999999999999999965
No 229
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=83.84 E-value=0.51 Score=38.41 Aligned_cols=35 Identities=3% Similarity=-0.126 Sum_probs=26.5
Q ss_pred Ccchhhhhhhhhcc--CCCcccchhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDY--DGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~--~~~~r~~~~~~~~~pw~~~~~ 36 (205)
++.+.+.+.+|+.. ++.+|+++.+++.|||+....
T Consensus 276 s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~ 312 (381)
T cd05626 276 SPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVD 312 (381)
T ss_pred CHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCCC
Confidence 35677778886654 445599999999999997643
No 230
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=83.79 E-value=0.45 Score=40.46 Aligned_cols=35 Identities=3% Similarity=-0.038 Sum_probs=31.3
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
+..|-+.|-++|++...+|.++.+++.|||+..-.
T Consensus 792 s~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~yq 826 (888)
T KOG4236|consen 792 SPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQ 826 (888)
T ss_pred CHHHHHHHHHHHHHHHHHhcchHhhccchhhhcch
Confidence 45678889999999999999999999999998754
No 231
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=83.47 E-value=2.3 Score=25.11 Aligned_cols=42 Identities=29% Similarity=0.420 Sum_probs=29.2
Q ss_pred HhhCCCCCCcccHHHHHHHHHHHH------hhcCCCCCHHHHHHHHHH
Q 028692 161 RLYDLRQTGYIEREEVKQMVAAIL------MESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 161 ~~~D~~~~G~I~~~e~~~~l~~~~------~~~g~~l~~~e~~~~~~~ 202 (205)
++||...+.+|+.+++.++++.=- ...|+.+|...+-+++-+
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 478999999999999999875200 113566777777666644
No 232
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=83.39 E-value=0.47 Score=38.20 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=25.0
Q ss_pred cchhhhhhhhhccCCCcccc---hhhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLT---FGERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~---~~~~~~~pw~~~~ 35 (205)
..+++.+.+++ .||..|++ +.+++.|||+.+.
T Consensus 265 ~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~ 299 (360)
T cd05627 265 EKAKDLILRFC-TDSENRIGSNGVEEIKSHPFFEGV 299 (360)
T ss_pred HHHHHHHHHhc-cChhhcCCCCCHHHHhcCCCCCCC
Confidence 45666777765 59999984 7899999999874
No 233
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=83.16 E-value=2.3 Score=25.76 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 028692 133 VIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAI 183 (205)
Q Consensus 133 ~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 183 (205)
-|+|......+.... ...+...+...|+.=..+.|+.+||.+.++.+
T Consensus 8 ~~~F~~L~~~l~~~l----~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHL----PPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 355555555544443 34456666666666678889999999988864
No 234
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=83.03 E-value=0.49 Score=43.46 Aligned_cols=32 Identities=6% Similarity=-0.087 Sum_probs=28.4
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
.+..+.+.+||..+|..|+++.+++.|||+..
T Consensus 269 ~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~ 300 (1021)
T PTZ00266 269 KELNILIKNLLNLSAKERPSALQCLGYQIIKN 300 (1021)
T ss_pred HHHHHHHHHHhcCChhHCcCHHHHhccHHHhh
Confidence 45677888899999999999999999999964
No 235
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=81.83 E-value=0.6 Score=37.16 Aligned_cols=35 Identities=9% Similarity=-0.095 Sum_probs=25.7
Q ss_pred CcchhhhhhhhhccCCC--cccchhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGS--SSLTFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~--~r~~~~~~~~~pw~~~~~ 36 (205)
+..+++.+.+||..++. .|.++.+++.|||+.+..
T Consensus 237 s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~~ 273 (332)
T cd05623 237 SEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGID 273 (332)
T ss_pred CHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCCC
Confidence 34566777788865443 468999999999998643
No 236
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=81.69 E-value=0.52 Score=37.26 Aligned_cols=32 Identities=16% Similarity=0.031 Sum_probs=27.2
Q ss_pred chhhhhhhhhccCCCcccchh----hhhhhhhcchH
Q 028692 4 SANRSFLRAFDYDGSSSLTFG----ERICAACIPLI 35 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~----~~~~~pw~~~~ 35 (205)
...+.+.+||.++|.+|+++. ++++|||+...
T Consensus 222 ~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~ 257 (321)
T cd05603 222 AACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPI 257 (321)
T ss_pred HHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCCC
Confidence 456788899999999999875 89999999763
No 237
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=81.63 E-value=16 Score=25.83 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=54.9
Q ss_pred HHHHHHhc---CCCCCcccHHHHHHHHHhhC--CCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHH
Q 028692 120 DRVFDLFD---EKKNGVIDFEEFVHALNVFH--PYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDD 194 (205)
Q Consensus 120 ~~if~~~d---~~~~g~I~~~eF~~~~~~~~--~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~ 194 (205)
+.+|..|- ..+...++=..|..++.... ........+.-+|..+-..+...|++++|.++|..+-...+..-+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~-- 79 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKS-- 79 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCT--
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccc--
Confidence 45566652 23345788888888887643 234567889999999877777789999999999987666654333
Q ss_pred HHHHHHHHH
Q 028692 195 LLEAIIDKM 203 (205)
Q Consensus 195 e~~~~~~~~ 203 (205)
+++++.+.+
T Consensus 80 ~~~~~~~kl 88 (154)
T PF05517_consen 80 SAEELKEKL 88 (154)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555554
No 238
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=81.22 E-value=7.4 Score=25.72 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=37.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 158 FAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 158 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
.+-+.+...++|.--+++-.+.+...+...|.++|+++++.+++.+.
T Consensus 55 aveq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV 101 (108)
T PF09682_consen 55 AVEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAV 101 (108)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455555568888888888888888888999999999999998764
No 239
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=80.99 E-value=3.1 Score=39.59 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=37.0
Q ss_pred HhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 028692 87 KNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 87 ~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~ 143 (205)
..+|+ +|.|.|+..+|..++.....-....+.-+..-...|.+...+|++|+.-+
T Consensus 4064 keydp--dgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4064 KEYDP--DGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred hhcCC--CCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 34455 67888899999888864333333345666666666777788888887643
No 240
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=80.70 E-value=2.1 Score=19.32 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=11.8
Q ss_pred CCCCCCcccHHHHHHH
Q 028692 164 DLRQTGYIEREEVKQM 179 (205)
Q Consensus 164 D~~~~G~I~~~e~~~~ 179 (205)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6788888888887654
No 241
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=80.70 E-value=0.89 Score=38.93 Aligned_cols=36 Identities=6% Similarity=-0.064 Sum_probs=32.1
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcchHH
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~ 36 (205)
|+.+=++.++++|..+|++|.++.+...|.|+....
T Consensus 278 ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~ 313 (596)
T KOG0586|consen 278 MSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLL 313 (596)
T ss_pred eechhHHHHHHhhccCccccCCHHHhhhhcccchhh
Confidence 567778899999999999999999999999997644
No 242
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=79.40 E-value=5.6 Score=25.40 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 153 EDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 153 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
.++++.+|+.+ .|++|.++...|...|+.++
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~l 32 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVL 32 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHH
Confidence 35778888888 67788888888888777654
No 243
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=79.00 E-value=0.95 Score=36.53 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=24.9
Q ss_pred Ccchhhhhhhhhcc--CCCcccchhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDY--DGSSSLTFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~--~~~~r~~~~~~~~~pw~~~~~ 36 (205)
+..+++.+.+++.. ++.+|.++.+++.|||+.+..
T Consensus 264 s~~~~~li~~l~~~~~~r~~r~~~~ei~~hp~f~~~~ 300 (363)
T cd05628 264 SEKAKDLILRFCCEWEHRIGAPGVEEIKTNPFFEGVD 300 (363)
T ss_pred CHHHHHHHHHHcCChhhcCCCCCHHHHhCCCCCCCCC
Confidence 34667777777652 233567899999999998743
No 244
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=78.62 E-value=3.2 Score=28.80 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhc--ccccCCCCCHHHHHHHHhcCCC--CChHHHHHHHHHhcCCC
Q 028692 57 KCRFDVGDLARLAAESRFSVNELEALSELYKNLSC--SIIKDGLIHKEELQVALFQAPY--GENLFLDRVFDLFDEKK 130 (205)
Q Consensus 57 ~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~--~~~~~g~i~~~ef~~~l~~~~~--~~~~~~~~if~~~d~~~ 130 (205)
-..|++.+|.++.+....+...++.+...|+.-.. .-+..+.|+++-|+..|..... -+...+..+|..|-...
T Consensus 5 ~~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 34678999999998887788888888888862211 0024568999999998864222 23555899999886654
No 245
>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]
Probab=77.29 E-value=0.97 Score=38.85 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=24.8
Q ss_pred chhhhhhh-hhccCCCcccchhhhhhhhhcch
Q 028692 4 SANRSFLR-AFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 4 ~~~~~~~~-~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+.-..+++ +|.+||.+|++|.+.++||+..+
T Consensus 225 ~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~ 256 (808)
T KOG0597|consen 225 SSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKG 256 (808)
T ss_pred HHHHHHHHHHhhcChhhcccHHHHhcChHHhh
Confidence 33344444 89999999999999999999855
No 246
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=75.92 E-value=0.79 Score=36.07 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=29.2
Q ss_pred CcchhhhhhhhhccCCCcccc-----hhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~-----~~~~~~~pw~~~~~ 36 (205)
+|.+++++.++|++|.++|+. ..++..|||+.+..
T Consensus 265 s~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~ 304 (355)
T KOG0616|consen 265 SSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVD 304 (355)
T ss_pred CHHHHHHHHHHHhhhhHhhhcCcCCCccccccCccccccc
Confidence 577888999999999999953 56789999998744
No 247
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=75.85 E-value=6.9 Score=21.24 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhcccccCCCCCHHHHHHHHhc
Q 028692 78 ELEALSELYKNLSCSIIKDGLIHKEELQVALFQ 110 (205)
Q Consensus 78 ~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~ 110 (205)
.+..+..+|+++........+++..||+..+..
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 455667778877753223558999999988753
No 248
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=75.14 E-value=5.8 Score=25.71 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCC---CCCcccHHHHHHHHHhh
Q 028692 79 LEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEK---KNGVIDFEEFVHALNVF 146 (205)
Q Consensus 79 i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~---~~g~I~~~eF~~~~~~~ 146 (205)
=..+...|+.+. .+|++....|..++.. . .....+.++|+.+..- ..+.|+.+|+..+|..+
T Consensus 29 W~~VE~RFd~La----~dG~L~rs~Fg~CIGM-~-dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLA----KDGLLPRSDFGECIGM-K-DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-----BTTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----cCCcccHHHHHHhcCC-c-ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 455677888884 5889999999988752 1 3345577787776432 13567777777766544
No 249
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.01 E-value=1.1 Score=38.08 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=26.3
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
-++.|-.||.+||.+|-+++++..+||+..
T Consensus 246 CrdLI~sMLvRdPkkRAslEeI~s~~Wlq~ 275 (864)
T KOG4717|consen 246 CRDLIQSMLVRDPKKRASLEEIVSTSWLQA 275 (864)
T ss_pred HHHHHHHHHhcCchhhccHHHHhccccccC
Confidence 356677799999999999999999999954
No 250
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=74.98 E-value=1.3 Score=35.90 Aligned_cols=35 Identities=6% Similarity=-0.204 Sum_probs=26.4
Q ss_pred CcchhhhhhhhhccCCCc--ccchhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSS--SLTFGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~--r~~~~~~~~~pw~~~~~ 36 (205)
+..+++.+.+||..++.+ |.++.+++.|||+....
T Consensus 275 s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~~ 311 (371)
T cd05622 275 SKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQ 311 (371)
T ss_pred CHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCCC
Confidence 456677888888744433 78999999999997643
No 251
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=74.91 E-value=54 Score=30.20 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=51.8
Q ss_pred CCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCC-----------CChHHHHHHHHHhcC
Q 028692 60 FDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY-----------GENLFLDRVFDLFDE 128 (205)
Q Consensus 60 l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~-----------~~~~~~~~if~~~d~ 128 (205)
++.+.+..+.... ....+|+++|. .+.. ++.-+++.++|.+++.+..- .....+..++..+..
T Consensus 205 f~~e~f~~~l~kl-cpR~eie~iF~---ki~~--~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp 278 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKL-CPRPEIEEIFR---KISG--KKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEP 278 (1189)
T ss_pred ccHHHHHHHHHhc-CCchhHHHHHH---Hhcc--CCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCC
Confidence 3444455544221 12355665554 5533 24579999999999864221 112337888888877
Q ss_pred CC----CCcccHHHHHHHHHhhC
Q 028692 129 KK----NGVIDFEEFVHALNVFH 147 (205)
Q Consensus 129 ~~----~g~I~~~eF~~~~~~~~ 147 (205)
|+ .|.|+-+-|+.+++.-.
T Consensus 279 ~~~~a~~gqms~dgf~ryl~gdE 301 (1189)
T KOG1265|consen 279 NSDNAEKGQMSTDGFVRYLMGDE 301 (1189)
T ss_pred chhhhhccccchhhhHHHhhCCc
Confidence 75 58999999998887654
No 252
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.69 E-value=8.6 Score=34.01 Aligned_cols=47 Identities=28% Similarity=0.570 Sum_probs=38.6
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 028692 131 NGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILM 185 (205)
Q Consensus 131 ~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 185 (205)
+| |+++||. . ...+.+.+++..|..+|. ++|.++.+++..++..+..
T Consensus 2 ~~-~~~~~~~-----~-~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~ 48 (646)
T KOG0039|consen 2 EG-ISFQELK-----I-TDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSIS 48 (646)
T ss_pred CC-cchhhhc-----c-cCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHH
Confidence 56 8999988 2 256788899999999998 9999999999999876543
No 253
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.32 E-value=7.8 Score=32.72 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHhhcccccCCCCCCCCCCHHHHHHHHhhCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHh
Q 028692 42 VITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALF 109 (205)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~ 109 (205)
++...+.|....+.-.+.+.-..-+.+.....+.-.|+..++ ..-|. +.||-++..|||.++.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIW---eLsD~--d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIW---ELSDV--DRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHH---hhccc--CccccccHHHHHhhHh
Confidence 344445554444444444443333333334445544544444 44444 5899999999999875
No 254
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=74.20 E-value=3.9 Score=38.94 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=30.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 028692 158 FAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAII 200 (205)
Q Consensus 158 ~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~ 200 (205)
..|+.||.||.|.|++.+|.+++. ...+.|..|++-++
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame-----~~k~ytqse~dfll 4098 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAME-----GHKHYTQSEIDFLL 4098 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHh-----ccccchhHHHHHHH
Confidence 358889999999999999999974 34567888877655
No 255
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.72 E-value=10 Score=20.92 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=26.4
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 167 QTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 167 ~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
..|.|+ +.+.++..+ ...|..++++.++.+++.+
T Consensus 14 ~~GlI~--~~~~~l~~l-~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLIS--EVKPLLDRL-QQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChh--hHHHHHHHH-HHcCcccCHHHHHHHHHHc
Confidence 357787 677777764 6789999999999988753
No 256
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=72.60 E-value=1.5 Score=35.17 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=30.3
Q ss_pred CcchhhhhhhhhccCCCccc----chhhhhhhhhcchHHH
Q 028692 2 DSSANRSFLRAFDYDGSSSL----TFGERICAACIPLIAI 37 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~----~~~~~~~~pw~~~~~~ 37 (205)
+..|.+.+.++|.+||.+|+ .+.++..|||+....-
T Consensus 250 s~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW 289 (357)
T KOG0598|consen 250 SEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINW 289 (357)
T ss_pred CHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCCH
Confidence 46788889999999999997 5788888999987553
No 257
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=72.45 E-value=2.8 Score=30.08 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 151 PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 151 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
.+..++..+++++-.++...|+.++|.+.. .-|..+|+++|+..+..++
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-----GVGV~VT~E~I~~~V~~~i 130 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKAC-----GVGVVVTPEQIEAAVEKYI 130 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTT-----TTT----HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-----CCCeEECHHHHHHHHHHHH
Confidence 456789999999977777789999999985 4678899999999998765
No 258
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=71.25 E-value=11 Score=32.68 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=37.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 154 DKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 154 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.-+.++|++.|.|++|.++-+|+...=+.+ .+..+++.+++.+...+
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~C---F~~pl~p~~l~~vk~vv 241 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKC---FNTPLDPQELEDVKNVV 241 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHh---cCCCCCHHHHHHHHHHH
Confidence 347789999999999999999998876665 45668888887776543
No 259
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=70.47 E-value=6.7 Score=25.76 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=30.7
Q ss_pred HhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCC-CCHHHHHHHHH
Q 028692 125 LFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIK-LPDDLLEAIID 201 (205)
Q Consensus 125 ~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~-l~~~e~~~~~~ 201 (205)
.+|+..+.+|+.++...++ . .+ .-|+..|..-..-||..-+.+++-.- +.-|.+ ++.+.+.++|+
T Consensus 11 LYDT~tS~YITLedi~~lV---~-~g-------~~f~V~DakTgeDiT~~iL~QII~E~-E~~g~~~lp~~~L~qlIr 76 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLV---R-EG-------REFQVVDSKSGDDLTRSILLQIIAEE-ESGGEPVLSTDFLTQIIR 76 (107)
T ss_pred ccCCCccceeeHHHHHHHH---H-CC-------CeEEEEECCCCchhHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHH
Confidence 3455555566666644432 1 11 12555555544556665555554321 111222 55556665554
No 260
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=70.47 E-value=2.5 Score=34.96 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=25.0
Q ss_pred hhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 6 NRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 6 ~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+..+--||++||..|++|.+++.|++|..
T Consensus 240 kEFV~~CL~k~P~~RpsA~~LLKh~FIk~ 268 (467)
T KOG0201|consen 240 KEFVEACLDKNPEFRPSAKELLKHKFIKR 268 (467)
T ss_pred HHHHHHHhhcCcccCcCHHHHhhhHHHHh
Confidence 44455599999999999999999999965
No 261
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=69.78 E-value=17 Score=30.13 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEA 198 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~ 198 (205)
++.|-+.+|.|.+|.|+.+|=-.++..-.+-.....+-...|+- .|.-|+.+++.+.++. ..-++.|.+++-+
T Consensus 70 ir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~---Sev~nWT~e~tvq 142 (575)
T KOG4403|consen 70 IRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE---SEVHNWTNERTVQ 142 (575)
T ss_pred HHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh---hhhhcchHHHHHH
Confidence 67788889999999999887544444433223333344446665 3567999999999864 2345677766555
Q ss_pred HH
Q 028692 199 II 200 (205)
Q Consensus 199 ~~ 200 (205)
.+
T Consensus 143 WL 144 (575)
T KOG4403|consen 143 WL 144 (575)
T ss_pred HH
Confidence 43
No 262
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.86 E-value=2.1 Score=37.93 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=29.1
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcc
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~ 33 (205)
+-.|+..+++++..+|..|.+|.+++.+|++.
T Consensus 805 saeak~FilrcFepd~~~R~sA~~LL~DpFlq 836 (1226)
T KOG4279|consen 805 SAEAKNFILRCFEPDPCDRPSAKDLLQDPFLQ 836 (1226)
T ss_pred HHHHHHHHHHHcCCCcccCccHHHhccCcccc
Confidence 44688899999999999999999999999993
No 263
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.79 E-value=2.6 Score=38.38 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
..++|..+|.+.+|.|++.++...+.. .+.....+..++...|.+++|.|++.+|.-.+-
T Consensus 285 ~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 285 YSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHhccccCCCccccccccccccc---CCCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 567899999999999999998887765 456778899999999999999999998776553
No 264
>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=65.48 E-value=2.8 Score=33.32 Aligned_cols=34 Identities=12% Similarity=-0.087 Sum_probs=25.6
Q ss_pred CcchhhhhhhhhccCCCc--ccchhhhhhhhhcchH
Q 028692 2 DSSANRSFLRAFDYDGSS--SLTFGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~--r~~~~~~~~~pw~~~~ 35 (205)
+..+.+.+.+||..++.+ |.++.+++.|||+...
T Consensus 237 ~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~ 272 (331)
T cd05624 237 SEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGI 272 (331)
T ss_pred CHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCC
Confidence 345677788888865544 5689999999999763
No 265
>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]
Probab=65.03 E-value=3.9 Score=33.98 Aligned_cols=33 Identities=15% Similarity=-0.041 Sum_probs=26.1
Q ss_pred Ccchhhhh-hhhhccCCCcccchhhhhhhhhcch
Q 028692 2 DSSANRSF-LRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 2 ~~~~~~~~-~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
-|++.+.+ ..||.++|..|+++.+++.+|-+..
T Consensus 230 ys~el~~lv~~~l~~~P~~RPsa~~LL~~P~l~~ 263 (426)
T KOG0589|consen 230 YSSELRSLVKSMLRKNPEHRPSALELLRRPHLLR 263 (426)
T ss_pred ccHHHHHHHHHHhhcCCccCCCHHHHhhChhhhh
Confidence 45555554 4599999999999999999977753
No 266
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=64.30 E-value=23 Score=23.02 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhh----CCCCCCcccHHHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLY----DLRQTGYIEREEVKQMVAAI 183 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~----D~~~~G~I~~~e~~~~l~~~ 183 (205)
|+.-|+.+.. +|.+.-..|-.+..+.. ..+-...+|..+ ... .+.|+++|++..+..|
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CIGM~d----SkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECIGMKD----SKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHHT--S-----HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhcCCcc----cHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 6778888876 78999999999986542 344555556554 222 5789999999988653
No 267
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=64.19 E-value=24 Score=28.06 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHh-hcCCCCCHHHHHHHHHH
Q 028692 156 IDFAFRLYDLRQTGYIEREEVKQMVAAILM-ESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 156 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~-~~g~~l~~~e~~~~~~~ 202 (205)
-+..|.+.|.|++|+++-.|+..++..-+. .+...-.++...+|-++
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEE 293 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEE 293 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 456789999999999999999998764442 23344445555555444
No 268
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=63.92 E-value=2.6 Score=35.30 Aligned_cols=34 Identities=15% Similarity=-0.004 Sum_probs=27.0
Q ss_pred Ccchhhhhhh-hhccCCCcccc-----hhhhhhhhhcchH
Q 028692 2 DSSANRSFLR-AFDYDGSSSLT-----FGERICAACIPLI 35 (205)
Q Consensus 2 ~~~~~~~~~~-~l~~~~~~r~~-----~~~~~~~pw~~~~ 35 (205)
+|.+.+++|+ +|.+||.+|+. +.++..||++...
T Consensus 413 FS~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~l 452 (591)
T KOG0986|consen 413 FSEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDL 452 (591)
T ss_pred cCHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccC
Confidence 4667778887 67799999987 4588899999763
No 269
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=63.51 E-value=2.5 Score=33.53 Aligned_cols=33 Identities=12% Similarity=-0.184 Sum_probs=28.1
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
+.-.+.+.+||-++|..|-||.++++||++.+.
T Consensus 257 ~~F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA 289 (502)
T KOG0574|consen 257 SEFNDFIRSCLIKKPEERKTALRLCEHTFIKNA 289 (502)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCC
Confidence 344567788999999999999999999999653
No 270
>PLN02228 Phosphoinositide phospholipase C
Probab=63.40 E-value=54 Score=28.60 Aligned_cols=62 Identities=13% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC-ChHHHHHHHHHhhCCC----CCCcccHHHHHHHH
Q 028692 117 LFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA-PIEDKIDFAFRLYDLR----QTGYIEREEVKQMV 180 (205)
Q Consensus 117 ~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~-~~~~~~~~~F~~~D~~----~~G~I~~~e~~~~l 180 (205)
+.+..+|..+..+ +.++.++|..++....+.. ...+.+..+|..|... ..|.++.+.|...|
T Consensus 24 ~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 24 VSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred HHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3345555554322 3455555555554444211 1233344444444321 22445555555554
No 271
>PF14164 YqzH: YqzH-like protein
Probab=63.39 E-value=29 Score=20.56 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=35.1
Q ss_pred HHHHHHHHhhCCC-CCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 154 DKIDFAFRLYDLR-QTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 154 ~~~~~~F~~~D~~-~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
..+..+|+.|-.| ..-.++..|++.+.+.+....+.+ ++..+-++++.+
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~-~~~Dl~eiVeDv 57 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEE-PDEDLHEIVEDV 57 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcC-CCchHHHHHHHH
Confidence 3577899999777 688899999999888776555443 454555555544
No 272
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.60 E-value=9.3 Score=31.03 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 028692 152 IEDKIDFAFRLYDLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 152 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 182 (205)
..+.++++|+.+|..++|+|+-.-++.+++.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~ 337 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTA 337 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHH
Confidence 3678999999999999999999999998864
No 273
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=60.20 E-value=3.9 Score=30.13 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=41.5
Q ss_pred HHHHHHHhcCC-CCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 119 LDRVFDLFDEK-KNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 119 ~~~if~~~d~~-~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
+.+-|...|.. -||.++-.|...+..-+. +++.=+.+.|.-.|.|++|+|+.+|+..++
T Consensus 189 v~wqf~qld~~p~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 189 VHWQFGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeeeccccCCCccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 44556666664 478888887665433222 345556788999999999999999988875
No 274
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.11 E-value=6.2 Score=36.01 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 73 ~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
.+++.....+.++|...|. +.+|+|+..+.+..+...++. ...+..++...|..+.|.+++.+|...+....
T Consensus 276 ~vsp~d~~~~~~if~q~d~--~~dG~I~s~~~~~~f~~~gl~-~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDK--DNDGSISSNEARNIFLPFGLS-KPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhccc--cCCCcccccccccccccCCCC-hhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 5678888888889999998 699999999999987653333 33478899999999999999999887765544
No 275
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=59.97 E-value=4.2 Score=29.92 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=42.2
Q ss_pred HHHhhhcccccCCCCCHHHHHHHHhcCCCC-ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 85 LYKNLSCSIIKDGLIHKEELQVALFQAPYG-ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 85 ~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~-~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
.|-.+|+. --+|++|-.|+...- .+.- ...-....|...|.|+||.|+..|+..++...
T Consensus 192 qf~qld~~-p~d~~~sh~el~pl~--ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gik 251 (259)
T KOG4004|consen 192 QFGQLDQH-PIDGYLSHTELAPLR--APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIK 251 (259)
T ss_pred eeccccCC-Ccccccccccccccc--CCcccHHhhchhhhhcccCCCCCceeHHHhhcccCcc
Confidence 35667764 258999999987532 1222 23336789999999999999999998776543
No 276
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=59.88 E-value=18 Score=22.48 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=14.9
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 168 TGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 168 ~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
.|+||++++..+|. ...++++.+..++..
T Consensus 19 ~G~lT~~eI~~~L~------~~~~~~e~id~i~~~ 47 (82)
T PF03979_consen 19 KGYLTYDEINDALP------EDDLDPEQIDEIYDT 47 (82)
T ss_dssp HSS-BHHHHHHH-S-------S---HHHHHHHHHH
T ss_pred cCcCCHHHHHHHcC------ccCCCHHHHHHHHHH
Confidence 57777777777652 233666666666654
No 277
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=58.92 E-value=52 Score=30.24 Aligned_cols=64 Identities=20% Similarity=0.154 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCCh-HHHHHHHHHh---hCCCCCCcccHHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPI-EDKIDFAFRL---YDLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~-~~~~~~~F~~---~D~~~~G~I~~~e~~~~l~~ 182 (205)
+..+|+.++....|..++++|+.++......... ++-+...|++ -|.++.|.++..++.+.|.+
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 6788999998888999999999999887743333 3334444444 47777899999999998864
No 278
>TIGR01673 holin_LLH phage holin, LL-H family. This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes.
Probab=58.23 E-value=52 Score=21.81 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=39.0
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHh
Q 028692 157 DFAFRLYDLRQTGYIEREEVKQMVAAILMESEI-KLPDDLLEAIIDKML 204 (205)
Q Consensus 157 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~-~l~~~e~~~~~~~~~ 204 (205)
..+.+..+..++|..-.+.=.+.+...+..+|. ++|+.+++-.++...
T Consensus 53 ~aVeq~~~~~~~G~~K~~~A~~~v~~~L~~~~i~~~t~~~i~~~IE~aV 101 (108)
T TIGR01673 53 SAVQQNFNESGGGAEKLEQAFNYITEELKKAHIPKPSDAQIEGAIEAAV 101 (108)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345667776778888888888888888889999 899999999988754
No 279
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=58.06 E-value=47 Score=21.22 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 152 IEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 152 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
.+.-++.+|+.- .++-.|+.++|...+.
T Consensus 47 ~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 47 IEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp -HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred cHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 344566677765 3455677777777664
No 280
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.56 E-value=5.2 Score=35.05 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=29.9
Q ss_pred CCcchhhhhhhhhccCCCcccch-----hhhhhhhhcchHH
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLIA 36 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~-----~~~~~~pw~~~~~ 36 (205)
|+-+|...+.++|.++|.+|+.. .++..||++.++.
T Consensus 591 ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~ 631 (694)
T KOG0694|consen 591 LSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSID 631 (694)
T ss_pred ccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCC
Confidence 45567888889999999999986 5678899998855
No 281
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=56.35 E-value=3.9 Score=34.27 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCcchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
|+|.|+..|.|||.+....|+.+.++.+||++..
T Consensus 713 VsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllP 746 (775)
T KOG1151|consen 713 VSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLP 746 (775)
T ss_pred cCHHHHHHHHHHHHhhhhhhhhHHHHccCccccc
Confidence 5788999999999999999999999999999965
No 282
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.83 E-value=6.2 Score=30.98 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=26.7
Q ss_pred hhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 5 ANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 5 ~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
|.....++|..||++|++..+++.|+++..
T Consensus 319 av~~~~~~l~~d~dkris~~~A~~~~~~~e 348 (449)
T KOG0664|consen 319 AVDLLQKLLHFDPDKRISVEEALQHRYLEE 348 (449)
T ss_pred HHHHHHHHhCCCCcccccHhhhcccccccc
Confidence 567788899999999999999999998855
No 283
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=54.25 E-value=56 Score=20.93 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQ 178 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 178 (205)
...++..+........++.+|...+...........-+..+|+..-. ||.++..|-.-
T Consensus 39 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~~~~E~~~ 96 (104)
T cd07313 39 AAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGELDEYEEHL 96 (104)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCCHHHHHH
Confidence 34455555444445567777777665443111122334455555533 47777777443
No 284
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=53.64 E-value=7.7 Score=32.25 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=29.4
Q ss_pred CcchhhhhhhhhccCCCcccchhhhhhhhhcc
Q 028692 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~ 33 (205)
+|.|.-.|.-||-+||.+|-|+.++-.|=|++
T Consensus 276 PSdA~gLIRwmLmVNP~RRATieDiAsHWWvN 307 (668)
T KOG0611|consen 276 PSDASGLIRWMLMVNPERRATIEDIASHWWVN 307 (668)
T ss_pred CchHHHHHHHHHhcCcccchhHHHHhhhheee
Confidence 57888889999999999999999999999984
No 285
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=51.93 E-value=20 Score=23.39 Aligned_cols=62 Identities=15% Similarity=0.356 Sum_probs=44.5
Q ss_pred CCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 130 KNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 130 ~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
+.|.|-|+=|..-...-. .....+.+..++.+.|..+.|.+-..++... .+++|++.+++.+
T Consensus 22 ~kG~VH~~C~~~~~~~k~-~~~~~~~~~aL~~l~~~l~~~iV~~kel~~~-----------~~~ee~k~~~~q~ 83 (101)
T PF09943_consen 22 KKGPVHYECFREKASKKL-YGDVPEDLAALLSLEDYLHEGIVYKKELERL-----------AESEEVKKVLRQV 83 (101)
T ss_pred cCCcEeHHHHHHHHhhhc-ccChhhHHHHHHHHHHHHHHHHHHHHHhccc-----------cccHHHHHHHHHH
Confidence 348899888887766554 4555567888888888888888877666654 4567777777654
No 286
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=51.84 E-value=35 Score=21.38 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhhCCCCCCccc
Q 028692 152 IEDKIDFAFRLYDLRQTGYIE 172 (205)
Q Consensus 152 ~~~~~~~~F~~~D~~~~G~I~ 172 (205)
...++..||++|..|++-.+.
T Consensus 57 S~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 57 SQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred CHHHHHHHHHHHHhcCcccEE
Confidence 357788899998888776554
No 287
>PLN02222 phosphoinositide phospholipase C 2
Probab=51.48 E-value=64 Score=28.27 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHhcCCC---CChHHHHHHHHHhcC-CCCCcccHHHHHHHHHh
Q 028692 96 DGLIHKEELQVALFQAPY---GENLFLDRVFDLFDE-KKNGVIDFEEFVHALNV 145 (205)
Q Consensus 96 ~g~i~~~ef~~~l~~~~~---~~~~~~~~if~~~d~-~~~g~I~~~eF~~~~~~ 145 (205)
++.++.++|...|..... .....+..++..+.. ...+.++++.|..++..
T Consensus 37 ~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 37 NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 356777777776643221 123335566665532 12445677777666643
No 288
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.21 E-value=11 Score=30.36 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=29.4
Q ss_pred CcchhhhhhhhhccCCCcccc-----hhhhhhhhhcchHH
Q 028692 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLIA 36 (205)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~r~~-----~~~~~~~pw~~~~~ 36 (205)
++.|+..+--+|.+||.+|+. |.++..|+++.+.-
T Consensus 392 s~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~ 431 (516)
T KOG0690|consen 392 SPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVD 431 (516)
T ss_pred CHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccCC
Confidence 567888888899999999997 67888999987754
No 289
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=50.29 E-value=43 Score=21.12 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 028692 170 YIEREEVKQMVAAILMESEIKLPDDLLEAIID 201 (205)
Q Consensus 170 ~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~ 201 (205)
.||.+||.+.-+ .+|..+|++..+.++.
T Consensus 14 ~iT~~eLlkysk----qy~i~it~~QA~~I~~ 41 (85)
T PF11116_consen 14 NITAKELLKYSK----QYNISITKKQAEQIAN 41 (85)
T ss_pred cCCHHHHHHHHH----HhCCCCCHHHHHHHHH
Confidence 467777777644 5777777777777664
No 290
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=50.20 E-value=28 Score=30.14 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=34.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 155 KIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 155 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
..+.-|..+|.|+.|+++.++..++|+. .+.+++++.+.++++++
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~----~~~~~d~~~~~~~l~ea 638 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKS----ENVGWDEDRLHEELQEA 638 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHH
Confidence 3456788899999999999999988874 34567777777777665
No 291
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=49.94 E-value=71 Score=21.17 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 156 IDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 156 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
+..+|-+++.-|+-..+..+++++|. .-|..++++-++.++.++
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~----sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILE----SVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHH----HhCcccCHHHHHHHHHHh
Confidence 45677888888888888888888865 467778888888877654
No 292
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=49.36 E-value=10 Score=30.07 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=23.0
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhh
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICA 29 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~ 29 (205)
+...+.+.+|+..+|.+|+++.+++.+
T Consensus 263 ~~l~~li~~cl~~~p~~Rps~~ell~~ 289 (334)
T cd05100 263 HELYMIMRECWHAVPSQRPTFKQLVED 289 (334)
T ss_pred HHHHHHHHHHcccChhhCcCHHHHHHH
Confidence 345677888999999999999999876
No 293
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.11 E-value=23 Score=28.90 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHH
Q 028692 116 NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQ 178 (205)
Q Consensus 116 ~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~ 178 (205)
++.++++|+.+|..++|+|+.+-+..+|.....--...+.+...=+..|.++-|.|-.+++..
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 455899999999999999999998888877651112223333344456777777777666443
No 294
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=48.69 E-value=34 Score=20.67 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 028692 155 KIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID 201 (205)
Q Consensus 155 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~ 201 (205)
.+..+...++.+..--+-..+++.++..+..-.|...+++.+..|+.
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs 70 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFS 70 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 45566666665555567788889988888888898888877777764
No 295
>PLN02859 glutamine-tRNA ligase
Probab=47.10 E-value=83 Score=28.68 Aligned_cols=50 Identities=8% Similarity=0.240 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 150 APIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 150 ~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
-.+...+..|++.+-.++...++..+|.+.. .-|..+|+++|+..+..++
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~C-----GVGV~VT~EqI~~~V~~~i 132 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEAC-----GVGVVVSPEDIEAAVNEVF 132 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhC-----CCCEEECHHHHHHHHHHHH
Confidence 3456789999999977777789999999875 3578899999999998765
No 296
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=46.44 E-value=53 Score=19.49 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 168 TGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 168 ~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
+=.|+.+-++.++. ..|.+.|+..++++.+.+
T Consensus 29 NPpine~mir~M~~----QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMM----QMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHH----HhCCCccHHHHHHHHHHH
Confidence 45688777777654 789999999999998765
No 297
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=46.16 E-value=49 Score=18.33 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=25.6
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 168 TGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 168 ~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
.+.++++.+...|. ...|+..|.++.+-.|++
T Consensus 16 ~~~~Sk~~l~~QL~---se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLT---SEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHH---hhcccCCCHHHHHHHHHc
Confidence 35689999888875 357899999999988765
No 298
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=45.19 E-value=65 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=10.4
Q ss_pred HHHhcCCCCCcccHHHHHHHH
Q 028692 123 FDLFDEKKNGVIDFEEFVHAL 143 (205)
Q Consensus 123 f~~~d~~~~g~I~~~eF~~~~ 143 (205)
....|..+.++|+-+|..+++
T Consensus 75 L~~le~~rg~Y~TiSeLKT~v 95 (148)
T PF12486_consen 75 LNQLEEQRGKYMTISELKTAV 95 (148)
T ss_pred HHHHHHhcCCceeHHHHHHHH
Confidence 334444444456666555544
No 299
>PLN02222 phosphoinositide phospholipase C 2
Probab=44.51 E-value=97 Score=27.22 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=8.5
Q ss_pred CCCCCHHHHHHHHh
Q 028692 96 DGLIHKEELQVALF 109 (205)
Q Consensus 96 ~g~i~~~ef~~~l~ 109 (205)
.+.++.+.|...|.
T Consensus 76 ~~~~~~~gF~~yL~ 89 (581)
T PLN02222 76 RNGLHLDAFFKYLF 89 (581)
T ss_pred ccCcCHHHHHHHhc
Confidence 44566666666653
No 300
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=44.11 E-value=41 Score=24.65 Aligned_cols=35 Identities=3% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 164 DLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 164 D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
..+.+|++..+|+.+.+. .-+..+|.++|+++++.
T Consensus 26 ~~d~~G~v~v~dLL~~~~----~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALR----FKGLWVTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHH----HT-TT--HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHH----HcCCCCCHHHHHHHHhh
Confidence 567889999999988876 23566889999988864
No 301
>PRK00523 hypothetical protein; Provisional
Probab=43.73 E-value=58 Score=19.80 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 157 DFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 157 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
+..|+.+ ...+=.|+.+-++.++ .+.|.+.|+..++++.+.+
T Consensus 27 rk~~~k~-l~~NPpine~mir~M~----~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQ-IRENPPITENMIRAMY----MQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHH-HHHCcCCCHHHHHHHH----HHhCCCccHHHHHHHHHHH
Confidence 3444444 2334567776666664 4789999999999988764
No 302
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=43.38 E-value=49 Score=19.45 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=7.4
Q ss_pred CcccHHHHHHHHHHHH
Q 028692 169 GYIEREEVKQMVAAIL 184 (205)
Q Consensus 169 G~I~~~e~~~~l~~~~ 184 (205)
..++.+|...++..++
T Consensus 13 ~~Ls~~e~~~~~~~i~ 28 (66)
T PF02885_consen 13 EDLSREEAKAAFDAIL 28 (66)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4466666666666543
No 303
>PLN02228 Phosphoinositide phospholipase C
Probab=42.98 E-value=1.4e+02 Score=26.21 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCC---CChHHHHHHHHHhcCC----CCCcccHHHHHHHHHhh
Q 028692 75 SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY---GENLFLDRVFDLFDEK----KNGVIDFEEFVHALNVF 146 (205)
Q Consensus 75 ~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~---~~~~~~~~if~~~d~~----~~g~I~~~eF~~~~~~~ 146 (205)
.+.++..++..|. +++.++.++|...|..... .....+..++..+... ..|.++.+.|..++...
T Consensus 22 ~~~ei~~if~~~s-------~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYS-------RNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhc-------CCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 5666666665442 2367999999998864322 1233478888887643 24679999999887643
No 304
>PLN02230 phosphoinositide phospholipase C 4
Probab=42.18 E-value=1.7e+02 Score=25.83 Aligned_cols=29 Identities=7% Similarity=0.131 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 118 FLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 118 ~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
.+..+|..+..++ +.++.++|..++....
T Consensus 30 ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 30 DVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 3444555443222 3455555554444443
No 305
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=41.73 E-value=27 Score=23.39 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhh
Q 028692 117 LFLDRVFDLFDEKKNGVIDFEEFVHALNVF 146 (205)
Q Consensus 117 ~~~~~if~~~d~~~~g~I~~~eF~~~~~~~ 146 (205)
...+.++..+-.|..|++.|.||+.-+...
T Consensus 7 eQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 7 EQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp HHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred HHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 346788888889999999999999876543
No 306
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.73 E-value=63 Score=28.75 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCC-------CCChHHHHHHHHHhhCCCCC
Q 028692 96 DGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHP-------YAPIEDKIDFAFRLYDLRQT 168 (205)
Q Consensus 96 ~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~-------~~~~~~~~~~~F~~~D~~~~ 168 (205)
+| ++.+++. . .....++..+-+|..+|. ++|.++-+++..+...... .....+....++...|.++.
T Consensus 2 ~~-~~~~~~~--~--~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 2 EG-ISFQELK--I--TDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred CC-cchhhhc--c--cCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 46 8888888 2 123345556778888886 7888888887776554321 12233445678888999999
Q ss_pred CcccHHHHHHHHH
Q 028692 169 GYIEREEVKQMVA 181 (205)
Q Consensus 169 G~I~~~e~~~~l~ 181 (205)
|++..+++.-++.
T Consensus 76 ~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 76 GYITNEDLEILLL 88 (646)
T ss_pred ceeeecchhHHHH
Confidence 9999999888775
No 307
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=41.00 E-value=63 Score=26.14 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
...+...+|..+.|.++---....+..++ ++...++++-+|... .|++|.+..-.+-+.++..+
T Consensus 112 laflLaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 112 LAFLLAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HHHHHhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHH
Confidence 45677788999999998877777777777 677788999999999 57788877777777776544
No 308
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.99 E-value=58 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHH
Q 028692 153 EDKIDFAFRLYDLRQTGYIEREEVK 177 (205)
Q Consensus 153 ~~~~~~~F~~~D~~~~G~I~~~e~~ 177 (205)
..-+-.++++.|.|.+|.++-+||.
T Consensus 476 nsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 476 NSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hhHHHhhhhhhcCCcccCcCHHHHH
Confidence 3345566666777777777776665
No 309
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=40.78 E-value=1.1e+02 Score=20.45 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=30.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 156 IDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 156 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
+..+|-+.-.-|+..+|.+++.++|+ ..|..+.+..+..++..
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~----AaGveVd~~~~~l~~~~ 47 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLS----AVNADVEDDVLDNFFKS 47 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHH----HcCCCccHHHHHHHHHH
Confidence 44566667677777888888888876 46777777777666553
No 310
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=40.73 E-value=50 Score=18.92 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 171 IEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 171 I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
+..+|++.-+-.+ .|.-++++|..++.+-.+
T Consensus 28 ~Gad~lr~klG~I---C~~CitpEE~~~I~e~~l 58 (60)
T PF10892_consen 28 IGADDLRVKLGGI---CGDCITPEEDREILEATL 58 (60)
T ss_pred hChHHHHHHHcch---hhccCCHHHHHHHHHHHh
Confidence 5667777776543 456688998888887654
No 311
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=40.42 E-value=64 Score=24.82 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 131 NGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 131 ~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
..+|+..+...-+.... +......+...+..|= .|.|+++||...+..++..-..+|.++-|..|+..+
T Consensus 6 ~~Ridl~~lk~~l~~~L-G~~~~~~Y~~~l~~fl---~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na 74 (252)
T PF12767_consen 6 NSRIDLEELKSQLQKRL-GPDRWKKYFQSLKRFL---SGKLSKEEFDKECRRILGRENVHLHNQLILSILKNA 74 (252)
T ss_pred ccccCHHHHHHHHHHHH-ChHHHHHHHHHHHHHH---HhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 34555555555444443 1122233333343332 366777777776666554444455565555555443
No 312
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.80 E-value=24 Score=29.34 Aligned_cols=56 Identities=16% Similarity=0.054 Sum_probs=40.2
Q ss_pred CCCCcccHHHHHHHHHhhCCC---CChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 028692 129 KKNGVIDFEEFVHALNVFHPY---APIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAIL 184 (205)
Q Consensus 129 ~~~g~I~~~eF~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~ 184 (205)
.|+...+-.||+......+.. +...+-++.+.+.+|.|++|.|+.+|--..|+.-+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdm 98 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDM 98 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHh
Confidence 455566677776655444422 22346788999999999999999999888887544
No 313
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=39.07 E-value=84 Score=18.60 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHHHHHh
Q 028692 188 EIKLPDDLLEAIIDKML 204 (205)
Q Consensus 188 g~~l~~~e~~~~~~~~~ 204 (205)
...|++.|++.++++|.
T Consensus 50 ~~PL~~~Ev~~i~kSi~ 66 (71)
T PF08708_consen 50 SPPLPESEVKAIAKSIA 66 (71)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 45677777777777764
No 314
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=38.12 E-value=16 Score=31.86 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=27.3
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
+..+..|=+||.. .+.|+++.++|.||++..
T Consensus 271 Pevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~ 301 (632)
T KOG0584|consen 271 PEVREFIEKCLAT-KSERLSAKELLKDPFFDE 301 (632)
T ss_pred HHHHHHHHHHhcC-chhccCHHHHhhChhhcc
Confidence 4567778889998 999999999999999965
No 315
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=37.61 E-value=55 Score=16.08 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=14.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 028692 155 KIDFAFRLYDLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 155 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~ 182 (205)
.+..+=..++ +|.||.+||.+.-+.
T Consensus 4 ~L~~L~~l~~---~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 4 RLEKLKELYD---KGEISEEEYEQKKAR 28 (31)
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHHH
Confidence 3444444554 577887777776443
No 316
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=37.45 E-value=74 Score=23.20 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=22.2
Q ss_pred CCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 028692 164 DLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID 201 (205)
Q Consensus 164 D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~ 201 (205)
..|.+|++..+++.+.++ ..+..+|.+.+++++.
T Consensus 27 ~ld~~G~v~v~~Ll~~~~----~~~~~~t~~~l~~vV~ 60 (179)
T PRK00819 27 TLDEEGWVDIDALIEALA----KAYKWVTRELLEAVVE 60 (179)
T ss_pred ccCCCCCEEHHHHHHHHH----HccCCCCHHHHHHHHH
Confidence 356677777777777654 2234577777777765
No 317
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=37.39 E-value=17 Score=28.66 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=24.4
Q ss_pred hhhhhhhccCCCcccchhhhhhhhhcch
Q 028692 7 RSFLRAFDYDGSSSLTFGERICAACIPL 34 (205)
Q Consensus 7 ~~~~~~l~~~~~~r~~~~~~~~~pw~~~ 34 (205)
..+..+|.+|+..|+.-.++++||++..
T Consensus 327 ~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~ 354 (391)
T KOG0983|consen 327 SFVKDCLTKDHRKRPKYNKLLEHPFIKR 354 (391)
T ss_pred HHHHHHhhcCcccCcchHHHhcCcceee
Confidence 4456699999999999999999999954
No 318
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.78 E-value=85 Score=18.96 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 157 DFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 157 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
++.+..+ ...+=.|+.+-++.+ +...|.+.|+..++++.+.+
T Consensus 26 rk~~~k~-lk~NPpine~~iR~M----~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 26 RKQMKKQ-LKDNPPINEEMIRMM----MAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHH-HhhCCCCCHHHHHHH----HHHhCCCchHHHHHHHHHHH
Confidence 3344444 223456887766666 44789999999999988776
No 319
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=36.63 E-value=1.3e+02 Score=19.95 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=20.6
Q ss_pred cCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHH
Q 028692 95 KDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVH 141 (205)
Q Consensus 95 ~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~ 141 (205)
.+.||+.+++...+.. .+-|...|.....-|+-.-...
T Consensus 16 tS~YITLedi~~lV~~---------g~~f~V~DakTgeDiT~~iL~Q 53 (107)
T TIGR01848 16 TSSYVTLEDIRDLVRE---------GREFQVVDSKSGDDLTRSILLQ 53 (107)
T ss_pred ccceeeHHHHHHHHHC---------CCeEEEEECCCCchhHHHHHHH
Confidence 5667888887776541 2346666654333354443333
No 320
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=36.50 E-value=1.1e+02 Score=19.08 Aligned_cols=33 Identities=9% Similarity=0.331 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 172 EREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 172 ~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
+...++++++..-...|.++|++..+++++.|.
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~ 61 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAII 61 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 344556666655566788888888888877653
No 321
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=36.44 E-value=20 Score=28.13 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.1
Q ss_pred chhhhhhhhhccCCCcccchhhhhhh
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICA 29 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~ 29 (205)
+....+.+|+..+|..|+++.+++.+
T Consensus 239 ~~~~li~~cl~~~p~~Rps~~~l~~~ 264 (316)
T cd05108 239 DVYMIMVKCWMIDADSRPKFRELIIE 264 (316)
T ss_pred HHHHHHHHHccCChhhCcCHHHHHHH
Confidence 45567788999999999999999876
No 322
>PRK01844 hypothetical protein; Provisional
Probab=35.88 E-value=92 Score=18.95 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=28.0
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 157 DFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 157 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
+..|+.+ ...+=.|+.+-++.++ .+.|.+.|+..++++.+.+
T Consensus 26 rk~~~k~-lk~NPpine~mir~Mm----~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNY-LQKNPPINEQMLKMMM----MQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHH-HHHCCCCCHHHHHHHH----HHhCCCccHHHHHHHHHHH
Confidence 3444444 2234467877666664 4789999999999887764
No 323
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=35.81 E-value=54 Score=29.01 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCC--------CCChHHHHHHHHHhhCCCCC----------------------
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHP--------YAPIEDKIDFAFRLYDLRQT---------------------- 168 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~--------~~~~~~~~~~~F~~~D~~~~---------------------- 168 (205)
..+++..+|.+-++..+|.+|......+.. .-+........|...|.+|+
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 578888899999999999998876544421 01122335568888999999
Q ss_pred -CcccHHHHHHHHHH
Q 028692 169 -GYIEREEVKQMVAA 182 (205)
Q Consensus 169 -G~I~~~e~~~~l~~ 182 (205)
|.++.+|+..++..
T Consensus 519 ~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 519 FGVVTVDELVALLAL 533 (975)
T ss_pred cCeeEHHHHHHHHHH
Confidence 99999999999873
No 324
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=35.59 E-value=1.3e+02 Score=24.81 Aligned_cols=65 Identities=17% Similarity=0.447 Sum_probs=45.9
Q ss_pred HHHHHHhcCC-CCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHh
Q 028692 120 DRVFDLFDEK-KNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILM 185 (205)
Q Consensus 120 ~~if~~~d~~-~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~ 185 (205)
+.+|...... ++..++++.+........ .+..++..+.++...|.+++|......+.+.+..++.
T Consensus 60 q~~f~~vk~~~q~~~~~l~k~~~~~~~~~-~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlk 125 (427)
T KOG2557|consen 60 QRMFDMVKQRRQDDKMTLEKLVIAKATYE-KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLK 125 (427)
T ss_pred ceEeeeccCccCCccchHHHHhhHHhhhc-cCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhh
Confidence 3444444333 234677887776655555 5667778888999999999999999999998876553
No 325
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=34.86 E-value=1.1e+02 Score=18.96 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=12.3
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 171 IEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 171 I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
+|.+|+.......+...+. ++++++..++.+
T Consensus 42 ~t~eemie~~~~~~~~~~~-~~~~~a~~~~~~ 72 (81)
T PF12674_consen 42 ITMEEMIEFCVPFMDEFNG-MTPEEARKMMPR 72 (81)
T ss_pred CCHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3444444443333322222 444444444433
No 326
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=34.40 E-value=1.2e+02 Score=19.12 Aligned_cols=47 Identities=21% Similarity=0.111 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHhc-CCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 028692 98 LIHKEELQVALFQ-APYGENLFLDRVFDLFDEKKNGVIDFEEFVHALN 144 (205)
Q Consensus 98 ~i~~~ef~~~l~~-~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~ 144 (205)
.|...+|..+|.+ .+.........+=..+|--.+|+||--||-.+..
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 3555555555443 1222222233333344445555555555444433
No 327
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=34.03 E-value=1.3e+02 Score=19.19 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=38.3
Q ss_pred cCCCCCHHHHHHH---HhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChH---HHHHHHHHhhCCCCC
Q 028692 95 KDGLIHKEELQVA---LFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIE---DKIDFAFRLYDLRQT 168 (205)
Q Consensus 95 ~~g~i~~~ef~~~---l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~---~~~~~~F~~~D~~~~ 168 (205)
-||.++..|.... +..... ......++...+..-.....++.+|...+.... ...++ .-+..++...-. |
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~r~~~l~~l~~vA~A--D 87 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGL-DAEARREAIRLFNEGKESDFGLEEYARQFRRAC-GGRPELLLQLLEFLFQIAYA--D 87 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH--c
Confidence 3666666665542 232222 122223344443322222366777777766543 12222 234455555533 5
Q ss_pred CcccHHHHH
Q 028692 169 GYIEREEVK 177 (205)
Q Consensus 169 G~I~~~e~~ 177 (205)
|.++..|-.
T Consensus 88 G~~~~~E~~ 96 (106)
T cd07316 88 GELSEAERE 96 (106)
T ss_pred CCCCHHHHH
Confidence 888888844
No 328
>COG4086 Predicted secreted protein [Function unknown]
Probab=33.91 E-value=1e+02 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 171 IEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 171 I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
-+.++++++.......++.++|+.++..++.-++
T Consensus 210 ~~~~dirkvv~dv~~~ynvnltd~qvn~i~~~~~ 243 (299)
T COG4086 210 DDPADIRKVVDDVANNYNVNLTDTQVNQIVNLFL 243 (299)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999987654
No 329
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=33.90 E-value=1.1e+02 Score=22.78 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=9.5
Q ss_pred CCcccHHHHHHHHHhhC
Q 028692 131 NGVIDFEEFVHALNVFH 147 (205)
Q Consensus 131 ~g~I~~~eF~~~~~~~~ 147 (205)
.|.|+-++|..++..+.
T Consensus 39 ~G~Id~~e~kkav~~li 55 (215)
T PF09873_consen 39 PGKIDVEEFKKAVYSLI 55 (215)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 45666666665554443
No 330
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=33.34 E-value=85 Score=23.62 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=49.0
Q ss_pred cCCCCCHHHHHHHHhcCCCC----ChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCC-Ch-HHHHHHHHHhhCCCCC
Q 028692 95 KDGLIHKEELQVALFQAPYG----ENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYA-PI-EDKIDFAFRLYDLRQT 168 (205)
Q Consensus 95 ~~g~i~~~ef~~~l~~~~~~----~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~-~~-~~~~~~~F~~~D~~~~ 168 (205)
+.|.|+..|+...+.+...+ ....+.+.+..+..-+.| +....|-.....+.... .. ......+.........
T Consensus 110 ~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~~~~il~~~~~~~~ 188 (223)
T PF04157_consen 110 NGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKDQSRILELAEEENG 188 (223)
T ss_dssp TTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HHHHHHHHHH--TTT
T ss_pred CCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHHHHHHHHHHHhhcC
Confidence 34567777777666543311 122344555555544444 22222211111111011 11 2445667777745677
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 169 GYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 169 G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
|++|..++.+-+. ++..-.++.++.+
T Consensus 189 g~vt~~~l~~~~~---------ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 189 GGVTASELAEKLG---------WSVERAKEALEEL 214 (223)
T ss_dssp SEEEHHHHHHHHT---------B-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---------CCHHHHHHHHHHH
Confidence 9999999998753 6666666665543
No 331
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=33.25 E-value=1.2e+02 Score=18.82 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=35.0
Q ss_pred hCCCCHHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCC
Q 028692 71 ESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNG 132 (205)
Q Consensus 71 ~~~~~~~~i~~l~~~f~~~d~~~~~~g~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g 132 (205)
-.+++.+++..+...|..+=. +..+.++-...+... ....+.+..+.+-+.....|
T Consensus 25 R~Gfs~~~i~~l~~ayr~l~~-----~~~~~~~a~~~l~~~-~~~~~~v~~~~~Fi~~S~RG 80 (83)
T PF13720_consen 25 RRGFSKEEISALRRAYRILFR-----SGLTLEEALEELEEE-YPDSPEVREIVDFIRNSKRG 80 (83)
T ss_dssp HTTS-HHHHHHHHHHHHHHHT-----SSS-HHHHHHHHHHH-TTSCHHHHHHHHHHHHTSS-
T ss_pred HcCCCHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHh-ccCCHHHHHHHHHHHhCCCC
Confidence 467899999999999998832 336777777666531 22356667776666544433
No 332
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.87 E-value=2e+02 Score=21.25 Aligned_cols=43 Identities=9% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 153 EDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 153 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
.+-...+-+.|.+|..|.|+...+..+.+ ..+.++...+.++-
T Consensus 118 ~~l~~lV~~af~~dk~G~l~~~rIl~Lrr-------l~i~D~~w~~am~a 160 (195)
T PF11363_consen 118 PELRALVNRAFQVDKEGNLNTSRILGLRR-------LEIDDERWQEAMDA 160 (195)
T ss_pred hHHHHHHHHHHhcCCCCCcCHHHHHHHHh-------ccCCCHHHHHHHHH
Confidence 33444567778889999999998887654 24567776665543
No 333
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=32.47 E-value=1.1e+02 Score=18.09 Aligned_cols=31 Identities=6% Similarity=0.273 Sum_probs=21.4
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 168 TGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 168 ~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
.|.+++.-+.++|+.+++.. .+++++.|+.-
T Consensus 47 rgrvskavlvkmlrkly~~t----k~e~vkrmlhl 77 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEAT----KNEEVKRMLHL 77 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhh----chHHHHHHHHh
Confidence 47889999999998877654 36788877653
No 334
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=32.25 E-value=28 Score=31.81 Aligned_cols=37 Identities=14% Similarity=-0.088 Sum_probs=30.6
Q ss_pred hhhhhhhhccCCCcccchhhhhhhhhcchHHHHHHHH
Q 028692 6 NRSFLRAFDYDGSSSLTFGERICAACIPLIAIIEAVV 42 (205)
Q Consensus 6 ~~~~~~~l~~~~~~r~~~~~~~~~pw~~~~~~~~~~~ 42 (205)
.+.|..+|.+|..+|++..+.+.||+++..+....+.
T Consensus 259 ndFIs~cL~Kd~e~RP~~~~ll~hpFi~e~~~e~qir 295 (953)
T KOG0587|consen 259 NDFISTCLVKDYEQRPSTEELLKHPFITEQPNERQVR 295 (953)
T ss_pred HHHHHHHHhhccccCcchhhhccCCcccccccHHHHH
Confidence 4678889999999999999999999998655444444
No 335
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=31.76 E-value=69 Score=18.74 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=19.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHH
Q 028692 155 KIDFAFRLYDLRQTGYIEREEVKQMV 180 (205)
Q Consensus 155 ~~~~~F~~~D~~~~G~I~~~e~~~~l 180 (205)
.-..||.+| .++.|.|+..++...|
T Consensus 8 ~rdkA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 8 NRDKAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred CHHHHHHHH-HHhCCCccHHHHHHHH
Confidence 345678887 6788999988888775
No 336
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=31.04 E-value=1.2e+02 Score=23.01 Aligned_cols=32 Identities=28% Similarity=0.565 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 172 EREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 172 ~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
+.++++.++......++.++++++++.++.-+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~ 204 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLM 204 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88999999998888999999999999887644
No 337
>COG2926 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.60 E-value=92 Score=20.03 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHHHH
Q 028692 189 IKLPDDLLEAIIDKM 203 (205)
Q Consensus 189 ~~l~~~e~~~~~~~~ 203 (205)
..++-+++..+|..|
T Consensus 54 ~~Ms~eei~~II~~M 68 (109)
T COG2926 54 PDMSIEEIQGIIESM 68 (109)
T ss_pred CCCCHHHHHHHHHHH
Confidence 345555555555443
No 338
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=30.57 E-value=1.1e+02 Score=20.39 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 028692 137 EEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVA 181 (205)
Q Consensus 137 ~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 181 (205)
.+|..+...-. .....++++.+|...+ +.++.+++.++|.
T Consensus 66 ~e~~a~~I~nL-~P~~~dElrai~~~~~----~~~~~e~l~~ILd 105 (112)
T PRK14981 66 KEKTAVKIADI-LPETRDELRAIFAKER----YTLSPEELDEILD 105 (112)
T ss_pred CHHHHHHHHhc-CCCCHHHHHHHHHHhc----cCCCHHHHHHHHH
Confidence 55554443332 2344556666666552 3455555555544
No 339
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=30.49 E-value=95 Score=20.40 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=18.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 171 IEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 171 I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
++.+|+.+-+. .+|++|++.+..++
T Consensus 78 ~~~~~lqkRle--------~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 78 LTNEELQKRLE--------ELSPEELEALQAEI 102 (104)
T ss_pred HhHHHHHHHHH--------hCCHHHHHHHHHHh
Confidence 45567777764 38999999988775
No 340
>PLN02223 phosphoinositide phospholipase C
Probab=30.47 E-value=2.3e+02 Score=24.71 Aligned_cols=48 Identities=15% Similarity=-0.033 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHH
Q 028692 154 DKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESE-IKLPDDLLEAIIDK 202 (205)
Q Consensus 154 ~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g-~~l~~~e~~~~~~~ 202 (205)
+.++.+|..| ..+.|..+.+.+.+.|.-+...-| ...+.++.+.++++
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~ 64 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAE 64 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 4445555555 244445555555544422111222 23444444444444
No 341
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=30.26 E-value=1.1e+02 Score=21.66 Aligned_cols=68 Identities=24% Similarity=0.226 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhcccccCC-CCCHHHHHHHHhcCCCCC-----hHHHHHHHHHhcCCCCCcccHHHHHHHHHhhC
Q 028692 79 LEALSELYKNLSCSIIKDG-LIHKEELQVALFQAPYGE-----NLFLDRVFDLFDEKKNGVIDFEEFVHALNVFH 147 (205)
Q Consensus 79 i~~l~~~f~~~d~~~~~~g-~i~~~ef~~~l~~~~~~~-----~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~ 147 (205)
+.+-+..|..+..+ -.+| .++-.+|..++....... .-....+|..+--..-+.|+|++|...+..+.
T Consensus 14 ~~~~f~~Fa~fGd~-~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 14 LEESFRAFAKFGDS-KASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred HHHHHHHHHHcCCc-cccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 44555666665321 1234 366666666665322221 12256777777666667888888877765554
No 342
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=30.20 E-value=1.7e+02 Score=19.43 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 028692 157 DFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID 201 (205)
Q Consensus 157 ~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~ 201 (205)
..+|-+.-..|+..||.+++.++|++ .|..+.+.-+..++.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~A----aGveVe~~~~~lf~~ 44 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGS----VGVEVDDEKLNKVIS 44 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH----cCCCccHHHHHHHHH
Confidence 34566666677778888888888763 566666666665554
No 343
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=30.04 E-value=65 Score=21.85 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=47.0
Q ss_pred cCCCCCHHHHHHHHhcC---CCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcc
Q 028692 95 KDGLIHKEELQVALFQA---PYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYI 171 (205)
Q Consensus 95 ~~g~i~~~ef~~~l~~~---~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I 171 (205)
-||.++.+|........ ..-.......++..++......+++.+|+..+...........-+..++...-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 58888888877653211 1112333456666665544446778887765533221111123355677777665 666
Q ss_pred cHHHHHHHHHHHHhhcCCCCCHHHHH
Q 028692 172 EREEVKQMVAAILMESEIKLPDDLLE 197 (205)
Q Consensus 172 ~~~e~~~~l~~~~~~~g~~l~~~e~~ 197 (205)
+..| ..+++.+-..+| +++++++
T Consensus 114 ~~~E-~~~l~~ia~~L~--i~~~~~~ 136 (140)
T PF05099_consen 114 SPEE-QEFLRRIAEALG--ISEEDFQ 136 (140)
T ss_dssp SCCH-HHHHHHHHHHCT--S-SS---
T ss_pred CHHH-HHHHHHHHHHcC--CCHHHHh
Confidence 6666 333444444444 4444444
No 344
>PLN02230 phosphoinositide phospholipase C 4
Probab=29.89 E-value=2e+02 Score=25.51 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHH
Q 028692 151 PIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEI-KLPDDLLEAIIDKM 203 (205)
Q Consensus 151 ~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~-~l~~~e~~~~~~~~ 203 (205)
.+..+++.+|..|- ++++.++.++|.+.|... +-+. ..+.++++.+++++
T Consensus 26 ~p~~ei~~lf~~~s-~~~~~mt~~~l~~FL~~~--Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 26 GPVADVRDLFEKYA-DGDAHMSPEQLQKLMAEE--GGGEGETSLEEAERIVDEV 76 (598)
T ss_pred CCcHHHHHHHHHHh-CCCCccCHHHHHHHHHHh--CCCcccCCHHHHHHHHHHH
Confidence 35578999999994 444899999999998731 2122 35778888888754
No 345
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=29.83 E-value=1.2e+02 Score=17.64 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhh--CCCCCCcccHHHHHHHHHH
Q 028692 152 IEDKIDFAFRLY--DLRQTGYIEREEVKQMVAA 182 (205)
Q Consensus 152 ~~~~~~~~F~~~--D~~~~G~I~~~e~~~~l~~ 182 (205)
+-+++....+.+ +. +...++.+|++..|..
T Consensus 13 ~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 13 PLDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EHHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 345555555555 32 3334566666665543
No 346
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=29.34 E-value=1.4e+02 Score=18.16 Aligned_cols=52 Identities=10% Similarity=0.239 Sum_probs=34.9
Q ss_pred HHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 028692 142 ALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID 201 (205)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~ 201 (205)
++..+. .+...+.++.-|... =+.|+..|+..+=+.++. -| ++.++++.+++
T Consensus 5 ii~~Lh-~G~~~e~vk~~F~~~----~~~Vs~~EI~~~Eq~Li~-eG--~~~eeiq~LCd 56 (71)
T PF04282_consen 5 IIKRLH-EGEDPEEVKEEFKKL----FSDVSASEISAAEQELIQ-EG--MPVEEIQKLCD 56 (71)
T ss_pred HHHHHh-CCCCHHHHHHHHHHH----HCCCCHHHHHHHHHHHHH-cC--CCHHHHHHHhH
Confidence 344555 455566777766654 255888888887777655 33 88999988875
No 347
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=28.30 E-value=98 Score=18.18 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=5.1
Q ss_pred ccHHHHHHHHH
Q 028692 171 IEREEVKQMVA 181 (205)
Q Consensus 171 I~~~e~~~~l~ 181 (205)
|+.+++.++|+
T Consensus 19 i~~~ei~~~L~ 29 (71)
T smart00874 19 LSAEEIEEILK 29 (71)
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 348
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=28.23 E-value=1.4e+02 Score=17.83 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 171 IEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 171 I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
-++-|+++-|..-+..--.+.++.++++|+++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDATPTELKELVEK 40 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35566666665444333455778888888764
No 349
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=28.12 E-value=1.4e+02 Score=18.81 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 171 IEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 171 I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
|+.+++.++-+ -....++++|++.+...
T Consensus 1 i~~~~v~~lA~----La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAK----LARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHH----HhCCCCCHHHHHHHHHH
Confidence 46677777655 24566888888877654
No 350
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=28.04 E-value=1.3e+02 Score=17.34 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHH
Q 028692 189 IKLPDDLLEAIID 201 (205)
Q Consensus 189 ~~l~~~e~~~~~~ 201 (205)
.++|.+|++.++.
T Consensus 15 ~~ft~~El~~i~~ 27 (64)
T PF09832_consen 15 EHFTEEELDAILA 27 (64)
T ss_dssp HHS-HHHHHHHHH
T ss_pred HHCCHHHHHHHHH
Confidence 3467777777664
No 351
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=28.01 E-value=1.5e+02 Score=18.18 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=11.0
Q ss_pred CCCCCHHHHHHHHHHHh
Q 028692 188 EIKLPDDLLEAIIDKML 204 (205)
Q Consensus 188 g~~l~~~e~~~~~~~~~ 204 (205)
|..+++++++.++++++
T Consensus 63 ~~di~~~~L~~ii~~AY 79 (79)
T PF14821_consen 63 GDDIPEEELKEIIEKAY 79 (79)
T ss_dssp CCCS-HHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHC
Confidence 46677777777777653
No 352
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=27.92 E-value=2.1e+02 Score=19.84 Aligned_cols=30 Identities=10% Similarity=-0.019 Sum_probs=15.1
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHhh
Q 028692 134 IDFEEFVHALNVFHPYAPIEDKIDFAFRLY 163 (205)
Q Consensus 134 I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~ 163 (205)
|+.+.|..++..+.....+....+.+|..+
T Consensus 39 i~~~~l~~li~lv~~g~It~~~ak~vl~~~ 68 (147)
T smart00845 39 ITPEHLAELLKLIEDGTISGKIAKEVLEEL 68 (147)
T ss_pred CCHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 555555555555543344444455555544
No 353
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=27.71 E-value=1.3e+02 Score=17.34 Aligned_cols=41 Identities=10% Similarity=0.349 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 152 IEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 152 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.++-++.+|.+-. +.+.++..++.+.|. +++.-+-+|+.+.
T Consensus 6 ~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~---------vs~~tvt~ml~~L 46 (60)
T PF01325_consen 6 EEDYLKAIYELSE--EGGPVRTKDIAERLG---------VSPPTVTEMLKRL 46 (60)
T ss_dssp HHHHHHHHHHHHH--CTSSBBHHHHHHHHT---------S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCccHHHHHHHHC---------CChHHHHHHHHHH
Confidence 3566888898886 788899999999864 7888888887653
No 354
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=26.69 E-value=37 Score=32.29 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=23.5
Q ss_pred cchhhhhhhhhccCCCcccchhhhhhh
Q 028692 3 SSANRSFLRAFDYDGSSSLTFGERICA 29 (205)
Q Consensus 3 ~~~~~~~~~~l~~~~~~r~~~~~~~~~ 29 (205)
.+-...++.|++.||++|++|.+.++.
T Consensus 265 ~~~Rnlil~Mi~rdPs~RlSAedyL~~ 291 (1431)
T KOG1240|consen 265 VSLRNLILSMIQRDPSKRLSAEDYLQK 291 (1431)
T ss_pred ccHHHHHHHHHccCchhccCHHHHHHh
Confidence 355678899999999999999999876
No 355
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=26.62 E-value=1.5e+02 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=30.9
Q ss_pred hhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 162 LYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 162 ~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
++..+....+|+++|.+.++.+ ..|..++.+.++.+-+.|-
T Consensus 141 lHn~~~~~kmt~~~Fi~~~~~~--~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 141 LHNPNVKKKMTLEDFIKNLRGI--NDGEDFPREFLKELYDSIK 181 (185)
T ss_pred hcCcccCCCCCHHHHHHHHhcc--cCCCCCCHHHHHHHHHHHH
Confidence 4555667789999999987632 2356799999999887763
No 356
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=26.38 E-value=1.8e+02 Score=18.52 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHH
Q 028692 134 IDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVK 177 (205)
Q Consensus 134 I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~ 177 (205)
.+..++...+...........-+..++..... ||.++..|-.
T Consensus 59 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--DG~~~~~E~~ 100 (111)
T cd07176 59 EGLAALLKAAAKLLPPELRETAFAVAVDIAAA--DGEVDPEERA 100 (111)
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--cCCCCHHHHH
Confidence 34566666555544211112224445555543 4778877743
No 357
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=26.32 E-value=29 Score=32.82 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=25.1
Q ss_pred CCcchhhhhhhhhccCCCcccc---hhhhhhhhhcch
Q 028692 1 MDSSANRSFLRAFDYDGSSSLT---FGERICAACIPL 34 (205)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~~r~~---~~~~~~~pw~~~ 34 (205)
|+..|++.|.+++. ++..|+. +.+.-.|||+.+
T Consensus 308 VSeeakdLI~~ll~-~~e~RLgrngiedik~HpFF~g 343 (1317)
T KOG0612|consen 308 VSEEAKDLIEALLC-DREVRLGRNGIEDIKNHPFFEG 343 (1317)
T ss_pred cCHHHHHHHHHHhc-ChhhhcccccHHHHHhCccccC
Confidence 35566666666654 5888998 999999999955
No 358
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=26.23 E-value=79 Score=15.76 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=7.0
Q ss_pred CcccHHHHHHHHH
Q 028692 132 GVIDFEEFVHALN 144 (205)
Q Consensus 132 g~I~~~eF~~~~~ 144 (205)
|.|+++|++.+..
T Consensus 3 ~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 3 GTISKEEYLDMAS 15 (33)
T ss_pred ceecHHHHHHHHH
Confidence 4555555555443
No 359
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=25.86 E-value=84 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=21.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHHHhh
Q 028692 159 AFRLYDLRQTGYIEREEVKQMVAAILME 186 (205)
Q Consensus 159 ~F~~~D~~~~G~I~~~e~~~~l~~~~~~ 186 (205)
+..-+|.|++|.++.+|+..+.+.++..
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~~~~ 82 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEIFDN 82 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHHHhh
Confidence 3446899999999999999887755533
No 360
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=25.19 E-value=43 Score=25.99 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.2
Q ss_pred chhhhhhhhhccCCCcccchhhhhhh
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICA 29 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~ 29 (205)
+....+.+|+..+|.+|+++.+++..
T Consensus 239 ~~~~li~~c~~~~p~~Rp~~~~l~~~ 264 (303)
T cd05110 239 DVYMVMVKCWMIDADSRPKFKELAAE 264 (303)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHH
Confidence 44566788999999999999998665
No 361
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=24.67 E-value=1.9e+02 Score=18.47 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 174 EEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 174 ~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
+-|.++|+.++...|..++.+.+...+..+
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVKKKDLINFLSFI 37 (90)
T ss_dssp HHHHHHHHHHHHCCT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCeeecHHHHHHHHHHH
Confidence 456777777777888888888887776654
No 362
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=23.75 E-value=2.5e+02 Score=19.36 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHhhCCCCChHHHHHHHHHhh
Q 028692 133 VIDFEEFVHALNVFHPYAPIEDKIDFAFRLY 163 (205)
Q Consensus 133 ~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~ 163 (205)
.|+.+.|..++..+.....+....+.++..+
T Consensus 39 ~i~~~~l~~li~l~~~~~Is~~~ak~ll~~~ 69 (148)
T PF02637_consen 39 PISPEHLAELINLLEDGKISKKSAKELLREL 69 (148)
T ss_dssp SSTHHHHHHHHHHHHTTSSGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4666666666655554444444455554444
No 363
>PRK13696 hypothetical protein; Provisional
Probab=23.71 E-value=1.7e+02 Score=17.28 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=11.9
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHH
Q 028692 121 RVFDLFDEKKNGVIDFEEFVHALN 144 (205)
Q Consensus 121 ~if~~~d~~~~g~I~~~eF~~~~~ 144 (205)
..+..+. ...|..+|.||+.-+.
T Consensus 11 d~Y~~L~-~kk~~~SFSevi~~L~ 33 (62)
T PRK13696 11 DVYEKLL-EIKGDKSFSEVIRELI 33 (62)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHH
Confidence 3444444 2334567777666554
No 364
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=23.69 E-value=1.6e+02 Score=17.21 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=16.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 028692 170 YIEREEVKQMVAAILMESEIKLPDDLLEAI 199 (205)
Q Consensus 170 ~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~ 199 (205)
.|+.++|..+|+ ...-.++.++|+..
T Consensus 29 ~it~~DF~~Al~----~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALK----KVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHH----TCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHH----HcCCCCCHHHHHHH
Confidence 377888888876 34455777777654
No 365
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=23.61 E-value=1.3e+02 Score=18.67 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=9.3
Q ss_pred hhcCCCCCHHHHHHHHH
Q 028692 185 MESEIKLPDDLLEAIID 201 (205)
Q Consensus 185 ~~~g~~l~~~e~~~~~~ 201 (205)
..+|++++++|..-+-.
T Consensus 27 rkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 27 RKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHTT----HHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHH
Confidence 36899999999876644
No 366
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=23.28 E-value=3e+02 Score=24.55 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHh
Q 028692 189 IKLPDDLLEAIIDKML 204 (205)
Q Consensus 189 ~~l~~~e~~~~~~~~~ 204 (205)
.++++++++.++++++
T Consensus 559 ~qlsdeel~~iV~evI 574 (620)
T TIGR00134 559 KLLAEEEIESIIQEII 574 (620)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4588899999998875
No 367
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=23.23 E-value=2e+02 Score=18.17 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 171 IEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 171 I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
|+.++++++-+ -....+++++++.+...
T Consensus 3 i~~e~i~~la~----La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 3 ITREEVKHLAK----LARLELSEEELEKFAGQ 30 (95)
T ss_pred CCHHHHHHHHH----HhCCCCCHHHHHHHHHH
Confidence 67788887765 34567888888877654
No 368
>PHA02105 hypothetical protein
Probab=22.93 E-value=81 Score=18.19 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHhcCCCCChH----HHHHHHHHhcCCC--CCcccHHHHHHHHHh
Q 028692 98 LIHKEELQVALFQAPYGENL----FLDRVFDLFDEKK--NGVIDFEEFVHALNV 145 (205)
Q Consensus 98 ~i~~~ef~~~l~~~~~~~~~----~~~~if~~~d~~~--~g~I~~~eF~~~~~~ 145 (205)
+++.++|..++.+......| .+.++=..|..-+ --.++|+||-..+-.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 46788888887654433222 2222222222222 236889998776543
No 369
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=22.92 E-value=3.4e+02 Score=22.64 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 153 EDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 153 ~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
.++..+.++.|+.+.--.-+..-+..-+..+....|-.||+.++-.|+..
T Consensus 303 ~~eyQr~~r~~~~~kl~~PS~~~v~~k~~~l~d~~~~~LSdkeis~~V~~ 352 (521)
T COG5296 303 REEYQRVWRSFKVGKLSMPSIAKVKEKYDKLVDTMGRRLSDKEISKMVAC 352 (521)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhCCcCchhHHHHHHHH
Confidence 56677777778776666666666677777777788999999999999875
No 370
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=22.43 E-value=1.7e+02 Score=20.35 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=7.3
Q ss_pred ccHHHHHHHHHHH
Q 028692 171 IEREEVKQMVAAI 183 (205)
Q Consensus 171 I~~~e~~~~l~~~ 183 (205)
+|-+|...+|+.|
T Consensus 43 lTd~E~~aVL~~I 55 (139)
T PF07128_consen 43 LTDDEARAVLARI 55 (139)
T ss_pred CCHHHHHHHHHHH
Confidence 5556666665543
No 371
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=1.3e+02 Score=18.78 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.3
Q ss_pred hcCCCCCHHHHHHHHHHHh
Q 028692 186 ESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 186 ~~g~~l~~~e~~~~~~~~~ 204 (205)
..|.+.|+.|+..++.+++
T Consensus 42 e~~r~YsEkeVN~ii~ryh 60 (89)
T COG3860 42 ENERQYSEKEVNLIIKRYH 60 (89)
T ss_pred ccccccCHHHHHHHHHHhC
Confidence 3577899999999988765
No 372
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=22.10 E-value=49 Score=29.85 Aligned_cols=29 Identities=0% Similarity=-0.156 Sum_probs=23.9
Q ss_pred chhhhhhhhhccCCCcccchhhhhhhhhc
Q 028692 4 SANRSFLRAFDYDGSSSLTFGERICAACI 32 (205)
Q Consensus 4 ~~~~~~~~~l~~~~~~r~~~~~~~~~pw~ 32 (205)
.-+++|.-||+.||..|+++.|++++-..
T Consensus 282 ~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~ 310 (738)
T KOG1989|consen 282 RLKDLIRTMLQPNPDERPNIYQVLEEIFE 310 (738)
T ss_pred HHHHHHHHHhccCcccCCCHHHHHHHHHH
Confidence 34677888999999999999999877443
No 373
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=22.01 E-value=2e+02 Score=17.49 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=8.5
Q ss_pred CCCCCHHHHHHHHHH
Q 028692 188 EIKLPDDLLEAIIDK 202 (205)
Q Consensus 188 g~~l~~~e~~~~~~~ 202 (205)
..++|+.|++.++++
T Consensus 51 K~~fS~sEm~aI~~E 65 (71)
T PF06569_consen 51 KDSFSPSEMQAIAEE 65 (71)
T ss_pred ccCCCHHHHHHHHHH
Confidence 445666666666554
No 374
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=21.83 E-value=1e+02 Score=18.15 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=18.5
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 028692 168 TGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 168 ~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~ 203 (205)
.|.++..++.+-+ +++++.++.|++..
T Consensus 12 ~~~~S~~eLa~~~---------~~s~~~ve~mL~~l 38 (69)
T PF09012_consen 12 RGRVSLAELAREF---------GISPEAVEAMLEQL 38 (69)
T ss_dssp S-SEEHHHHHHHT---------T--HHHHHHHHHHH
T ss_pred cCCcCHHHHHHHH---------CcCHHHHHHHHHHH
Confidence 5788888887764 37899999988764
No 375
>PHA03155 hypothetical protein; Provisional
Probab=21.78 E-value=1.3e+02 Score=20.18 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHhcCCCCChHHHHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHH
Q 028692 98 LIHKEELQVALFQAPYGENLFLDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVK 177 (205)
Q Consensus 98 ~i~~~ef~~~l~~~~~~~~~~~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~ 177 (205)
-.+.+|+..-|.++... +..++.-+..-...+++.++-.+=-.++..+. ......--+.+-.....+-.+.+|.+++.
T Consensus 7 ~~tvEeLaaeL~kL~~E-NK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v-~~Lt~~A~~KIe~kVrk~~~~~vTk~q~~ 84 (115)
T PHA03155 7 CADVEELEKELQKLKIE-NKALKKKLLQHGNPEDELLTPAQKDAIINSLV-NKLTKKAEEKIRERVLKDLLPLVSKNQCM 84 (115)
T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHHHccCCCCccccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 46677777766543332 22333333322234567777776444444443 22223333445555555566788999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHH
Q 028692 178 QMVAAILMESEIKLPDDLLEAI 199 (205)
Q Consensus 178 ~~l~~~~~~~g~~l~~~e~~~~ 199 (205)
.+|..+ .+..+++.++.++.
T Consensus 85 ~al~~l--t~RidvSmde~~~~ 104 (115)
T PHA03155 85 EAIADI--KYRIDVSIDESQDL 104 (115)
T ss_pred HHHhcC--eeeEEecccchhcc
Confidence 998743 44555666665544
No 376
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=21.52 E-value=2.2e+02 Score=20.72 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=30.1
Q ss_pred hCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 028692 163 YDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKML 204 (205)
Q Consensus 163 ~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~ 204 (205)
+..+....+|.++|.+.++.+ ..|..++.+.++.+-++|-
T Consensus 144 hn~~~k~kmt~~~Fi~~~~~~--~~~~~~~~~~L~~iY~~I~ 183 (187)
T smart00222 144 HNPNVKKKMTLEDFIKNVRGS--NDGEDLPREFLEELYDSIK 183 (187)
T ss_pred cCCccCCCCCHHHHHHHHhcc--CCCCCCCHHHHHHHHHHHH
Confidence 444556689999999998732 3367899999999887763
No 377
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=3.6e+02 Score=23.63 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhh-----------cC-CCCCHHHHHHHHHHHh
Q 028692 152 IEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILME-----------SE-IKLPDDLLEAIIDKML 204 (205)
Q Consensus 152 ~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~-----------~g-~~l~~~e~~~~~~~~~ 204 (205)
.+++++.+|+.+ .+|.|+++.+..+|+.+... +| ..++.+|++.+++++.
T Consensus 521 ~~~~i~~~~~~~---~~g~iake~iee~l~~l~~~p~~~~~e~~~~~gL~~ls~eEve~iI~eii 582 (631)
T COG2511 521 DDEHIEELLRLV---SEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEII 582 (631)
T ss_pred CHHHHHHHHHHH---hcccchHHHHHHHHHHHHhCCCCCHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 455666666665 46888888888888876532 33 3479999999998875
No 378
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=21.18 E-value=43 Score=29.87 Aligned_cols=28 Identities=7% Similarity=-0.073 Sum_probs=24.0
Q ss_pred hhhhhhccCCCcccchhhhhhhhhcchH
Q 028692 8 SFLRAFDYDGSSSLTFGERICAACIPLI 35 (205)
Q Consensus 8 ~~~~~l~~~~~~r~~~~~~~~~pw~~~~ 35 (205)
.++..|.++|.+|.++...+.||++...
T Consensus 250 fvK~altknpKkRptaeklL~h~fvs~~ 277 (829)
T KOG0576|consen 250 FVKGALTKNPKKRPTAEKLLQHPFVSQT 277 (829)
T ss_pred HHHHHhcCCCccCCChhhheeceeeccc
Confidence 4556899999999999999999998653
No 379
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=21.08 E-value=1e+02 Score=21.03 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=11.7
Q ss_pred hhcCCCCCHHHHHHHHHHH
Q 028692 185 MESEIKLPDDLLEAIIDKM 203 (205)
Q Consensus 185 ~~~g~~l~~~e~~~~~~~~ 203 (205)
+.++.++++++++.|+.++
T Consensus 109 PSL~nkidD~~le~iL~dl 127 (134)
T KOG2351|consen 109 PSLENKIDDDELEQILKDL 127 (134)
T ss_pred cccccccCHHHHHHHHHHH
Confidence 4455666666666666554
No 380
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=21.05 E-value=2.8e+02 Score=18.86 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 028692 119 LDRVFDLFDEKKNGVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEA 198 (205)
Q Consensus 119 ~~~if~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~ 198 (205)
...+++.|-. +.|+-+.....+....+...+...+.-++..+=.| ..+..+++... -+.+++++++..
T Consensus 39 l~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n-------~~I~~Il~~~v--d~~~l~dddi~~ 106 (122)
T PF06648_consen 39 LIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN-------RYIINILQKFV--DGQHLTDDDISY 106 (122)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc-------HHHHHHHHHHh--cCccCCcccHHH
Confidence 3445555543 34666655555544422223333344333333111 22333443322 244566666665
Q ss_pred HH
Q 028692 199 II 200 (205)
Q Consensus 199 ~~ 200 (205)
+-
T Consensus 107 ls 108 (122)
T PF06648_consen 107 LS 108 (122)
T ss_pred HH
Confidence 54
No 381
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis]
Probab=20.73 E-value=2.5e+02 Score=23.83 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=35.9
Q ss_pred CcccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhC
Q 028692 132 GVIDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKMLI 205 (205)
Q Consensus 132 g~I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~~~~ 205 (205)
..+.-.+|..++..+..........+.+++.+=. +.|..+...+.+.-+ ++.=-+++||+++++.+|.
T Consensus 391 ~~~~p~~la~ll~ll~~~~Is~~~ak~ll~~l~~-~~~~~~~s~LIeek~-----l~~I~dp~eIe~lv~~vm~ 458 (505)
T KOG2438|consen 391 SIVTPRQLADLLKLLSEETISALSAKQLLRHLLK-NPGVMTVSILIEEKR-----LWQIRDPAEIEELVRSVME 458 (505)
T ss_pred cccChHHHHHHHHHhhhhhhhHHHHHHHHHHHHh-CCCcCCHHHHHhhhh-----hhhcCCHHHHHHHHHHHHH
Confidence 3456666666666665444444555555555422 223223333333211 1111379999999998873
No 382
>COG5562 Phage envelope protein [General function prediction only]
Probab=20.48 E-value=81 Score=21.80 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHh
Q 028692 120 DRVFDLFDEKKNGVIDFEEFVHALNV 145 (205)
Q Consensus 120 ~~if~~~d~~~~g~I~~~eF~~~~~~ 145 (205)
..+-.....+..|..+|+||+..+..
T Consensus 75 ~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 75 TLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 44555556688899999999987644
No 383
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=20.10 E-value=2.6e+02 Score=18.11 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 028692 134 IDFEEFVHALNVFHPYAPIEDKIDFAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK 202 (205)
Q Consensus 134 I~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~~~~~g~~l~~~e~~~~~~~ 202 (205)
|.-.+|..++..+. ...+++++..+-..+-..+...++..++...+..+ .++.-+++++..+-.+
T Consensus 20 vP~~Dy~PLlALL~-r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v---t~~~P~~~di~RV~~~ 84 (96)
T PF11829_consen 20 VPPTDYVPLLALLR-RRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRV---TDELPTPEDIERVRAR 84 (96)
T ss_dssp B-HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH---CSS-S-HHHHHHHHHH
T ss_pred CCCCccHHHHHHhc-ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HcCCcCHHHHHHHHHH
Confidence 67777888887777 55777888877777766666666888888777643 4555678888877654
Done!