BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028694
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q22851|ASIC2_CAEEL Degenerin-like protein asic-2 OS=Caenorhabditis elegans GN=asic-2
           PE=3 SV=1
          Length = 545

 Score = 33.5 bits (75), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 158 VISGILCI--GCIKRARQQKEMTRDQAVKDLEDLERRREELEQ 198
           ++ G  C+  G IK A    E+  D  +KD+ED+++  + LE+
Sbjct: 476 LVMGAFCVTGGAIKMAPDDDEIENDHRIKDVEDVKKEIDHLEK 518


>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 30.8 bits (68), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 4/108 (3%)

Query: 70  FKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAF 129
           F    ++F+GIF  + +   F +  +  EW F  K  +   + V  GML  F+ ++ + +
Sbjct: 558 FAYSQELFEGIFSVWPLSKLFELQGSIHEWWFRWKLDR---FAVVNGMLFAFIYLLLQKY 614

Query: 130 PDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEM 177
              S  + + +    I++ +L    V ++   I   GC K   +  EM
Sbjct: 615 QLLSEGKGEPLFSNKISNCLLFVSVVSFMTYSIWASGC-KNKSECNEM 661


>sp|A6VYL1|HISZ_MARMS ATP phosphoribosyltransferase regulatory subunit OS=Marinomonas sp.
           (strain MWYL1) GN=hisZ PE=3 SV=1
          Length = 392

 Score = 30.8 bits (68), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 140 ILLQNIA----SYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREE 195
           ++LQ ++    S ++L  G V ++SG+L   C   A Q+ ++      KDL +L+R  EE
Sbjct: 146 LMLQTLSTAGLSNLVLDLGHVDIVSGVLA-ACNLNADQESKLIELYKAKDLPELDRYAEE 204

Query: 196 L 196
           L
Sbjct: 205 L 205


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,997,178
Number of Sequences: 539616
Number of extensions: 2803313
Number of successful extensions: 45036
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 41732
Number of HSP's gapped (non-prelim): 2582
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)