Query 028694
Match_columns 205
No_of_seqs 36 out of 38
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 15:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08507 COPI_assoc: COPI asso 99.8 9.9E-21 2.2E-25 150.1 10.4 128 45-187 4-131 (136)
2 PF04156 IncA: IncA protein; 93.0 1.2 2.5E-05 36.6 9.5 48 116-167 15-62 (191)
3 PF07047 OPA3: Optic atrophy 3 92.4 0.93 2E-05 36.6 8.0 55 149-203 77-131 (134)
4 PF07332 DUF1469: Protein of u 91.1 5.2 0.00011 30.5 10.5 44 148-191 73-120 (121)
5 PRK13454 F0F1 ATP synthase sub 88.1 4.7 0.0001 33.7 8.9 63 138-203 26-88 (181)
6 PF05680 ATP-synt_E: ATP synth 87.6 4.6 0.0001 30.9 7.8 25 142-169 9-33 (86)
7 PRK09174 F0F1 ATP synthase sub 87.4 3.6 7.8E-05 35.4 8.0 59 142-203 52-110 (204)
8 PF06305 DUF1049: Protein of u 86.3 5.3 0.00011 27.6 7.0 17 180-196 51-67 (68)
9 PRK08156 type III secretion sy 84.6 12 0.00025 35.3 10.4 90 109-204 147-243 (361)
10 PRK06569 F0F1 ATP synthase sub 83.8 8.7 0.00019 32.4 8.4 58 144-201 11-72 (155)
11 PF09726 Macoilin: Transmembra 82.9 2.6 5.5E-05 42.7 5.8 31 81-112 68-98 (697)
12 PRK07352 F0F1 ATP synthase sub 81.5 25 0.00055 28.8 10.2 19 183-201 56-74 (174)
13 PRK05702 flhB flagellar biosyn 80.9 20 0.00043 33.6 10.5 67 138-204 182-255 (359)
14 PRK09108 type III secretion sy 80.1 22 0.00048 33.2 10.5 66 138-203 177-249 (353)
15 PRK14471 F0F1 ATP synthase sub 79.7 13 0.00029 30.0 7.9 54 147-203 12-65 (164)
16 PRK12772 bifunctional flagella 79.5 20 0.00042 35.8 10.4 67 138-204 438-511 (609)
17 TIGR00328 flhB flagellar biosy 79.3 24 0.00053 32.9 10.5 88 111-204 154-248 (347)
18 TIGR01404 FlhB_rel_III type II 78.8 26 0.00057 32.5 10.5 67 138-204 174-247 (342)
19 PRK06298 type III secretion sy 78.8 58 0.0013 30.6 16.8 92 107-204 151-249 (356)
20 PRK13109 flhB flagellar biosyn 78.6 27 0.00059 32.8 10.6 67 138-204 184-257 (358)
21 PF07716 bZIP_2: Basic region 78.3 8.2 0.00018 26.3 5.4 35 168-202 16-50 (54)
22 PRK14475 F0F1 ATP synthase sub 78.3 17 0.00037 29.8 8.2 28 176-203 40-67 (167)
23 PF06305 DUF1049: Protein of u 77.6 18 0.00038 25.0 7.0 14 176-189 54-67 (68)
24 PF06151 Trehalose_recp: Treha 77.3 53 0.0011 31.2 12.2 72 40-111 56-127 (414)
25 PRK12721 secretion system appa 77.2 64 0.0014 30.2 12.9 66 138-203 175-247 (349)
26 COG3105 Uncharacterized protei 75.5 15 0.00032 30.9 7.0 54 147-200 7-61 (138)
27 PRK06568 F0F1 ATP synthase sub 75.4 24 0.00051 29.6 8.4 56 145-203 6-61 (154)
28 PF14316 DUF4381: Domain of un 74.9 16 0.00034 29.4 7.0 30 172-201 44-78 (146)
29 PRK14473 F0F1 ATP synthase sub 74.8 27 0.00058 28.3 8.4 25 179-203 41-65 (164)
30 PRK13453 F0F1 ATP synthase sub 74.3 26 0.00057 28.9 8.4 53 148-203 23-75 (173)
31 COG5415 Predicted integral mem 72.6 53 0.0012 29.9 10.3 87 101-193 30-123 (251)
32 PRK07353 F0F1 ATP synthase sub 72.0 34 0.00074 26.7 8.2 27 177-203 36-62 (140)
33 KOG2302 T-type voltage-gated C 71.6 33 0.00071 37.7 10.0 95 87-198 1324-1420(1956)
34 COG1377 FlhB Flagellar biosynt 71.4 45 0.00096 31.9 10.1 69 136-204 180-255 (363)
35 PRK12773 flhB flagellar biosyn 71.4 42 0.0009 34.4 10.4 65 138-202 473-544 (646)
36 KOG4571 Activating transcripti 71.2 7.2 0.00016 36.2 4.7 34 168-201 239-272 (294)
37 PRK13455 F0F1 ATP synthase sub 71.2 58 0.0013 27.0 9.8 20 138-158 27-46 (184)
38 PF04977 DivIC: Septum formati 70.7 13 0.00029 25.9 5.1 26 176-201 23-48 (80)
39 PF08016 PKD_channel: Polycyst 69.5 47 0.001 30.7 9.7 42 81-131 293-334 (425)
40 PRK06231 F0F1 ATP synthase sub 68.5 76 0.0017 27.2 10.5 25 179-203 81-105 (205)
41 PRK05759 F0F1 ATP synthase sub 68.2 51 0.0011 26.1 8.5 53 147-202 8-60 (156)
42 TIGR02209 ftsL_broad cell divi 68.2 41 0.0009 24.0 8.1 22 176-197 30-51 (85)
43 PF07856 Orai-1: Mediator of C 67.7 78 0.0017 27.0 11.9 106 37-165 50-163 (175)
44 PF06724 DUF1206: Domain of Un 67.1 43 0.00093 23.8 7.4 54 112-165 4-65 (73)
45 PRK13460 F0F1 ATP synthase sub 66.7 42 0.00091 27.6 8.0 21 181-201 51-71 (173)
46 PF10233 Cg6151-P: Uncharacter 66.3 68 0.0015 25.9 11.9 70 80-162 26-110 (113)
47 PF13705 TRC8_N: TRC8 N-termin 66.2 24 0.00051 35.1 7.4 75 40-122 174-248 (508)
48 PRK13461 F0F1 ATP synthase sub 66.1 55 0.0012 26.3 8.4 18 183-200 42-59 (159)
49 PRK14472 F0F1 ATP synthase sub 66.0 52 0.0011 27.0 8.4 53 148-203 23-75 (175)
50 PRK12468 flhB flagellar biosyn 65.9 1.2E+02 0.0027 28.8 16.0 89 110-204 160-255 (386)
51 KOG4031 Vesicle coat protein c 65.6 9 0.0002 34.2 4.0 31 171-201 126-157 (216)
52 PF06210 DUF1003: Protein of u 64.8 69 0.0015 25.4 10.5 17 99-115 4-20 (108)
53 PF06212 GRIM-19: GRIM-19 prot 63.5 52 0.0011 27.0 7.8 52 146-197 30-91 (130)
54 PF06295 DUF1043: Protein of u 63.2 38 0.00082 27.1 6.9 41 159-199 11-51 (128)
55 PRK09173 F0F1 ATP synthase sub 63.1 67 0.0015 25.8 8.4 25 179-203 35-59 (159)
56 PRK14474 F0F1 ATP synthase sub 62.7 56 0.0012 28.9 8.4 24 179-202 38-61 (250)
57 PF12086 DUF3563: Protein of u 62.6 14 0.0003 27.0 3.8 40 156-197 1-44 (59)
58 PF03729 DUF308: Short repeat 62.6 29 0.00064 23.2 5.4 40 115-159 2-41 (72)
59 PF15099 PIRT: Phosphoinositid 62.5 11 0.00024 31.4 3.7 36 143-178 80-115 (129)
60 PF14163 SieB: Superinfection 62.1 76 0.0016 25.4 8.5 73 117-192 4-82 (151)
61 CHL00118 atpG ATP synthase CF0 61.5 69 0.0015 26.0 8.2 53 149-201 28-84 (156)
62 TIGR02976 phageshock_pspB phag 60.8 42 0.00092 25.2 6.3 22 182-203 47-68 (75)
63 TIGR03141 cytochro_ccmD heme e 60.7 34 0.00074 22.9 5.3 28 146-173 5-32 (45)
64 PF04696 Pinin_SDK_memA: pinin 60.6 33 0.00072 27.6 6.2 9 165-173 17-25 (131)
65 CHL00118 atpG ATP synthase CF0 60.4 81 0.0017 25.5 8.4 55 149-203 24-79 (156)
66 PF00430 ATP-synt_B: ATP synth 60.0 63 0.0014 24.4 7.4 27 148-174 4-30 (132)
67 PF04977 DivIC: Septum formati 59.2 36 0.00077 23.7 5.4 46 151-196 5-50 (80)
68 PRK00888 ftsB cell division pr 59.0 66 0.0014 25.1 7.4 30 172-201 29-58 (105)
69 PRK07352 F0F1 ATP synthase sub 58.9 90 0.0019 25.6 8.6 59 143-202 24-82 (174)
70 PF15086 UPF0542: Uncharacteri 57.9 83 0.0018 24.0 7.7 45 146-191 23-67 (74)
71 PF11368 DUF3169: Protein of u 57.7 1E+02 0.0022 26.7 9.1 72 105-178 8-79 (248)
72 KOG4326 Mitochondrial F1F0-ATP 57.5 87 0.0019 24.2 8.1 50 142-194 11-62 (81)
73 TIGR03321 alt_F1F0_F0_B altern 57.4 79 0.0017 27.5 8.4 21 181-201 40-60 (246)
74 PF12269 zf-CpG_bind_C: CpG bi 56.5 26 0.00056 31.6 5.3 40 164-203 21-62 (236)
75 PRK13453 F0F1 ATP synthase sub 56.3 1E+02 0.0022 25.5 8.4 61 140-201 20-80 (173)
76 PRK14472 F0F1 ATP synthase sub 54.8 1.1E+02 0.0024 25.1 8.4 58 142-200 22-79 (175)
77 PRK08476 F0F1 ATP synthase sub 54.4 95 0.002 25.0 7.8 51 148-201 12-62 (141)
78 PRK08475 F0F1 ATP synthase sub 53.4 1.3E+02 0.0028 24.9 11.7 19 140-159 25-43 (167)
79 PF01312 Bac_export_2: FlhB Hr 52.3 14 0.0003 34.2 3.0 66 138-203 177-249 (343)
80 PF06936 Selenoprotein_S: Sele 52.0 19 0.00041 31.2 3.7 22 141-162 32-53 (190)
81 KOG3335 Predicted coiled-coil 51.9 22 0.00047 31.1 4.0 52 150-201 72-123 (181)
82 PF10112 Halogen_Hydrol: 5-bro 51.8 1.4E+02 0.0031 24.9 9.6 19 183-201 74-92 (199)
83 PRK13455 F0F1 ATP synthase sub 51.1 91 0.002 25.8 7.4 28 176-203 57-84 (184)
84 PF04995 CcmD: Heme exporter p 51.0 72 0.0016 21.3 6.1 39 147-193 5-43 (46)
85 COG0711 AtpF F0F1-type ATP syn 50.9 1.1E+02 0.0025 25.1 7.9 19 183-201 43-61 (161)
86 PRK13461 F0F1 ATP synthase sub 50.8 1.3E+02 0.0028 24.2 8.4 37 166-202 32-68 (159)
87 PF01086 Clathrin_lg_ch: Clath 50.4 27 0.00058 30.5 4.4 30 170-199 131-161 (225)
88 COG5393 Predicted membrane pro 49.7 42 0.00091 28.0 5.1 42 151-197 87-128 (131)
89 cd08766 Cyt_b561_ACYB-1_like P 49.6 1.5E+02 0.0032 24.5 10.7 85 79-163 45-137 (144)
90 COG5374 Uncharacterized conser 49.5 25 0.00055 30.9 4.0 23 181-203 154-176 (192)
91 PF01578 Cytochrom_C_asm: Cyto 49.2 37 0.00081 28.2 4.9 51 142-192 77-127 (214)
92 KOG1029 Endocytic adaptor prot 48.7 31 0.00067 36.7 5.1 11 187-197 396-406 (1118)
93 KOG3915 Transcription regulato 48.6 54 0.0012 33.0 6.5 53 137-204 500-555 (641)
94 PF12352 V-SNARE_C: Snare regi 47.8 60 0.0013 22.3 5.0 33 167-199 9-41 (66)
95 PF05805 L6_membrane: L6 membr 46.3 41 0.00089 29.5 4.8 91 45-159 8-108 (195)
96 PRK11677 hypothetical protein; 46.2 83 0.0018 26.0 6.4 39 160-198 16-54 (134)
97 PF14193 DUF4315: Domain of un 46.2 67 0.0015 24.5 5.4 24 176-199 14-37 (83)
98 PF06667 PspB: Phage shock pro 45.5 1.3E+02 0.0027 22.7 6.7 52 152-203 11-68 (75)
99 PF02656 DUF202: Domain of unk 44.8 1.1E+02 0.0023 21.5 6.9 52 110-167 11-62 (73)
100 PLN03192 Voltage-dependent pot 44.7 3.5E+02 0.0077 27.4 14.0 45 116-162 254-299 (823)
101 TIGR03142 cytochro_ccmI cytoch 44.1 76 0.0016 24.7 5.6 16 188-203 61-76 (117)
102 PRK03814 oxaloacetate decarbox 43.4 38 0.00083 25.9 3.8 26 140-165 6-31 (85)
103 PF01988 VIT1: VIT family; In 43.3 1.4E+02 0.0031 25.3 7.6 34 169-202 57-91 (213)
104 TIGR01144 ATP_synt_b ATP synth 42.2 1.5E+02 0.0032 23.3 7.1 47 153-202 5-51 (147)
105 PF11460 DUF3007: Protein of u 41.4 1.9E+02 0.0041 23.3 8.0 23 178-202 79-101 (104)
106 KOG4403 Cell surface glycoprot 41.2 85 0.0018 31.4 6.6 20 179-198 244-263 (575)
107 PF04111 APG6: Autophagy prote 40.4 68 0.0015 29.4 5.5 27 176-202 56-82 (314)
108 PRK11637 AmiB activator; Provi 39.9 1.4E+02 0.0031 27.8 7.6 24 176-199 53-76 (428)
109 PF10661 EssA: WXG100 protein 39.8 42 0.0009 27.8 3.7 23 138-160 118-140 (145)
110 PRK00888 ftsB cell division pr 39.8 1.8E+02 0.0039 22.6 7.4 39 160-198 24-62 (105)
111 PRK06569 F0F1 ATP synthase sub 39.7 2.3E+02 0.005 23.9 8.8 52 152-203 16-67 (155)
112 PRK08475 F0F1 ATP synthase sub 38.8 2.2E+02 0.0049 23.4 8.3 53 146-201 25-77 (167)
113 PRK05886 yajC preprotein trans 38.7 48 0.001 26.5 3.8 10 151-160 12-21 (109)
114 PF00170 bZIP_1: bZIP transcri 38.3 1.2E+02 0.0026 21.0 5.4 31 169-199 18-48 (64)
115 TIGR02209 ftsL_broad cell divi 38.2 1.5E+02 0.0032 21.2 8.3 24 173-196 34-57 (85)
116 COG2919 Septum formation initi 38.1 2E+02 0.0043 22.6 7.9 23 179-201 59-81 (117)
117 PF11669 WBP-1: WW domain-bind 37.8 51 0.0011 25.7 3.8 20 158-177 32-51 (102)
118 cd08763 Cyt_b561_CYB561 Verteb 37.6 2.3E+02 0.005 23.3 9.9 84 79-162 45-136 (143)
119 PF12999 PRKCSH-like: Glucosid 37.5 1E+02 0.0022 26.7 5.8 33 171-203 140-172 (176)
120 PF10190 Tmemb_170: Putative t 37.1 79 0.0017 25.3 4.8 38 138-175 4-41 (105)
121 TIGR00769 AAA ADP/ATP carrier 36.7 1.3E+02 0.0028 29.2 7.1 46 73-118 73-135 (472)
122 smart00338 BRLZ basic region l 36.4 1.3E+02 0.0027 20.9 5.2 32 169-200 18-49 (65)
123 PF12709 Kinetocho_Slk19: Cent 36.0 1.3E+02 0.0028 23.5 5.6 40 165-204 36-76 (87)
124 PF12072 DUF3552: Domain of un 36.0 2.7E+02 0.0059 23.6 9.0 12 149-160 10-21 (201)
125 PF11365 DUF3166: Protein of u 35.5 1E+02 0.0022 24.3 5.1 38 168-205 6-43 (96)
126 cd08765 Cyt_b561_CYBRD1 Verteb 35.4 2.7E+02 0.0058 23.4 8.5 85 79-163 52-144 (153)
127 COG1730 GIM5 Predicted prefold 35.2 1.3E+02 0.0027 25.3 5.9 38 165-202 96-133 (145)
128 PF15458 NTR2: Nineteen comple 35.0 1E+02 0.0023 27.4 5.7 36 166-201 218-253 (254)
129 COG0711 AtpF F0F1-type ATP syn 34.5 2.6E+02 0.0057 23.0 8.3 51 148-198 11-65 (161)
130 PF06295 DUF1043: Protein of u 34.3 1.8E+02 0.0038 23.3 6.4 33 158-190 6-38 (128)
131 PRK02919 oxaloacetate decarbox 34.1 66 0.0014 24.5 3.7 29 140-168 5-35 (82)
132 PRK12671 putative monovalent c 34.0 81 0.0018 25.7 4.5 35 136-170 4-38 (120)
133 PF14142 YrzO: YrzO-like prote 33.5 1.3E+02 0.0027 21.0 4.6 10 156-165 7-16 (46)
134 PF12808 Mto2_bdg: Micro-tubul 33.4 77 0.0017 22.5 3.7 38 167-204 12-49 (52)
135 PF00430 ATP-synt_B: ATP synth 33.2 2.1E+02 0.0046 21.5 6.7 59 141-200 2-60 (132)
136 COG3879 Uncharacterized protei 33.0 2.6E+02 0.0056 25.6 7.9 27 177-203 57-83 (247)
137 PRK06231 F0F1 ATP synthase sub 32.7 3.2E+02 0.0069 23.4 9.9 61 140-201 50-110 (205)
138 PF04999 FtsL: Cell division p 32.6 2E+02 0.0044 21.2 8.1 10 181-190 46-55 (97)
139 PRK11677 hypothetical protein; 32.5 2.1E+02 0.0045 23.6 6.7 24 179-202 31-54 (134)
140 PF14147 Spore_YhaL: Sporulati 32.3 1.9E+02 0.0042 20.8 6.2 34 158-194 13-50 (52)
141 KOG1666 V-SNARE [Intracellular 32.3 96 0.0021 28.0 5.0 26 175-200 143-169 (220)
142 PF02388 FemAB: FemAB family; 31.9 80 0.0017 29.5 4.7 30 174-203 270-299 (406)
143 KOG3882 Tetraspanin family int 31.8 58 0.0013 27.4 3.4 27 146-172 52-79 (237)
144 KOG2675 Adenylate cyclase-asso 31.6 53 0.0012 32.5 3.6 21 50-70 264-284 (480)
145 KOG3119 Basic region leucine z 31.4 1E+02 0.0022 27.7 5.1 21 183-203 228-248 (269)
146 PF15345 TMEM51: Transmembrane 31.0 24 0.00052 31.9 1.1 22 145-167 59-80 (233)
147 PF07926 TPR_MLP1_2: TPR/MLP1/ 30.8 1.2E+02 0.0026 24.0 4.9 24 176-199 97-120 (132)
148 PRK05585 yajC preprotein trans 30.8 75 0.0016 25.0 3.7 12 149-160 24-35 (106)
149 PF03188 Cytochrom_B561: Eukar 30.4 2.5E+02 0.0054 21.4 11.8 51 118-168 85-136 (137)
150 COG1560 HtrB Lauroyl/myristoyl 30.2 4.4E+02 0.0096 24.3 9.9 75 82-156 16-93 (308)
151 PF11031 Phage_holin_T: Bacter 30.1 2.5E+02 0.0054 25.3 7.1 68 116-186 7-74 (216)
152 PF04612 T2SM: Type II secreti 29.9 17 0.00038 28.7 0.0 32 169-200 40-71 (160)
153 PF15437 PGBA_C: Plasminogen-b 29.7 1.1E+02 0.0023 24.0 4.3 24 175-198 60-83 (86)
154 TIGR01195 oadG_fam sodium pump 29.6 90 0.002 23.4 3.8 23 141-163 3-25 (82)
155 COG4117 Thiosulfate reductase 29.6 78 0.0017 28.5 4.0 59 136-195 71-129 (221)
156 PF06120 Phage_HK97_TLTM: Tail 29.3 1.9E+02 0.004 27.0 6.5 23 137-159 17-39 (301)
157 TIGR00739 yajC preprotein tran 29.0 69 0.0015 24.1 3.1 15 172-186 24-38 (84)
158 cd04775 HTH_Cfa-like Helix-Tur 29.0 96 0.0021 23.4 3.9 26 176-201 77-102 (102)
159 KOG3088 Secretory carrier memb 28.9 68 0.0015 30.2 3.6 15 184-198 78-92 (313)
160 PRK08476 F0F1 ATP synthase sub 28.8 3.1E+02 0.0066 22.0 9.8 62 141-203 10-71 (141)
161 KOG3119 Basic region leucine z 28.7 1.2E+02 0.0025 27.3 5.0 35 168-202 206-240 (269)
162 PRK09173 F0F1 ATP synthase sub 28.7 3.1E+02 0.0067 22.0 8.0 35 168-202 31-65 (159)
163 PRK12704 phosphodiesterase; Pr 28.6 4.7E+02 0.01 25.8 9.4 13 187-199 64-76 (520)
164 PF11023 DUF2614: Protein of u 28.6 1.9E+02 0.0042 23.6 5.8 33 135-167 35-67 (114)
165 PF06103 DUF948: Bacterial pro 28.3 2.4E+02 0.0052 20.6 7.5 9 180-188 36-44 (90)
166 PRK13460 F0F1 ATP synthase sub 28.3 3.3E+02 0.0072 22.3 9.3 26 176-201 53-78 (173)
167 PF10270 MMgT: Membrane magnes 28.2 33 0.00071 26.7 1.3 47 140-189 38-89 (106)
168 PF14981 FAM165: FAM165 family 27.9 2.3E+02 0.0049 20.2 5.4 12 156-167 10-24 (51)
169 PRK10636 putative ABC transpor 27.9 1.1E+02 0.0023 30.3 5.0 21 181-201 567-587 (638)
170 KOG3478 Prefoldin subunit 6, K 27.8 1.6E+02 0.0034 24.3 5.1 30 173-202 8-37 (120)
171 PF12158 DUF3592: Protein of u 27.6 51 0.0011 25.1 2.2 27 148-174 2-28 (148)
172 PF15325 MRI: Modulator of ret 27.4 92 0.002 25.2 3.7 43 5-47 58-104 (106)
173 KOG1145 Mitochondrial translat 26.7 1E+02 0.0022 31.8 4.6 31 174-204 421-451 (683)
174 KOG4220 Muscarinic acetylcholi 26.4 35 0.00076 33.8 1.4 80 46-127 32-121 (503)
175 cd08554 Cyt_b561 Eukaryotic cy 26.2 2.3E+02 0.0049 21.8 5.7 57 105-161 68-130 (131)
176 PRK09458 pspB phage shock prot 26.2 3E+02 0.0065 21.0 6.2 23 181-203 46-68 (75)
177 TIGR03319 YmdA_YtgF conserved 26.2 4.4E+02 0.0096 25.9 8.8 14 187-200 58-71 (514)
178 KOG2070 Guanine nucleotide exc 26.1 1.6E+02 0.0034 30.1 5.8 37 167-203 620-656 (661)
179 cd02434 Nodulin-21_like_3 Nodu 26.1 3.7E+02 0.008 23.4 7.5 13 189-201 79-91 (225)
180 PF06697 DUF1191: Protein of u 26.1 77 0.0017 29.3 3.4 26 160-185 226-251 (278)
181 cd00632 Prefoldin_beta Prefold 25.9 2.9E+02 0.0064 20.8 6.5 45 157-201 50-94 (105)
182 PF11214 Med2: Mediator comple 25.9 1.4E+02 0.003 24.1 4.4 17 161-177 71-87 (105)
183 PF13801 Metal_resist: Heavy-m 25.9 2E+02 0.0044 20.5 5.0 25 179-203 58-82 (125)
184 PF01741 MscL: Large-conductan 25.8 2.2E+02 0.0048 23.1 5.7 56 140-198 72-127 (128)
185 COG4749 Uncharacterized protei 25.7 1E+02 0.0022 27.1 3.9 28 162-190 46-73 (196)
186 PRK05771 V-type ATP synthase s 24.9 1.2E+02 0.0025 30.0 4.6 51 107-158 444-494 (646)
187 PF03087 DUF241: Arabidopsis p 24.9 1.5E+02 0.0033 25.8 4.9 26 175-200 189-214 (231)
188 PRK13428 F0F1 ATP synthase sub 24.4 4E+02 0.0086 25.6 8.0 16 183-198 38-53 (445)
189 PF12273 RCR: Chitin synthesis 24.3 68 0.0015 25.3 2.4 16 150-165 7-22 (130)
190 PF04678 DUF607: Protein of un 24.2 2.5E+02 0.0054 23.5 5.9 48 155-202 41-89 (180)
191 PF04508 Pox_A_type_inc: Viral 24.1 84 0.0018 19.1 2.2 18 185-202 2-19 (23)
192 PF05064 Nsp1_C: Nsp1-like C-t 24.1 1.8E+02 0.0038 22.9 4.7 37 167-203 61-97 (116)
193 PF14931 IFT20: Intraflagellar 24.0 1.9E+02 0.0041 23.3 5.0 35 169-203 68-103 (120)
194 PF03650 MPC: Uncharacterised 24.0 2.3E+02 0.0049 23.3 5.4 34 148-181 72-105 (119)
195 PRK13428 F0F1 ATP synthase sub 23.9 6.4E+02 0.014 24.2 9.3 55 144-200 7-62 (445)
196 COG4298 Uncharacterized protei 23.8 3.8E+02 0.0081 21.3 7.2 12 146-157 26-37 (95)
197 KOG2325 Predicted transporter/ 23.4 3E+02 0.0066 27.2 7.1 121 46-166 72-230 (488)
198 KOG1532 GTPase XAB1, interacts 23.3 1.2E+02 0.0026 29.0 4.2 33 169-201 266-298 (366)
199 COG1480 Predicted membrane-ass 22.8 8.4E+02 0.018 25.6 10.3 54 34-95 268-323 (700)
200 PRK13922 rod shape-determining 22.8 1.8E+02 0.0039 25.3 5.0 18 184-201 93-110 (276)
201 TIGR01144 ATP_synt_b ATP synth 22.8 3.8E+02 0.0081 21.0 7.9 54 147-201 4-57 (147)
202 PF04518 Effector_1: Effector 22.8 1.7E+02 0.0037 28.2 5.2 32 171-202 201-232 (379)
203 PRK00409 recombination and DNA 22.7 1.9E+02 0.0041 29.8 5.8 20 179-198 536-555 (782)
204 PRK07353 F0F1 ATP synthase sub 22.6 3.7E+02 0.008 20.8 9.4 27 176-202 42-68 (140)
205 PRK14475 F0F1 ATP synthase sub 22.6 4.3E+02 0.0093 21.6 9.5 27 176-202 47-73 (167)
206 PLN03223 Polycystin cation cha 22.5 5.2E+02 0.011 29.5 9.1 17 45-61 1216-1232(1634)
207 PF15458 NTR2: Nineteen comple 22.4 2.2E+02 0.0047 25.4 5.5 36 164-199 209-244 (254)
208 PF05911 DUF869: Plant protein 22.4 1.8E+02 0.0039 30.4 5.5 39 164-202 57-96 (769)
209 CHL00019 atpF ATP synthase CF0 22.0 4.5E+02 0.0098 21.7 7.0 22 140-161 26-47 (184)
210 PF04791 LMBR1: LMBR1-like mem 21.9 2.2E+02 0.0048 26.5 5.6 19 148-166 174-192 (471)
211 PF11932 DUF3450: Protein of u 21.7 2.6E+02 0.0057 24.2 5.8 18 183-200 62-79 (251)
212 PRK11147 ABC transporter ATPas 21.4 1.4E+02 0.0029 29.4 4.3 24 179-202 570-593 (635)
213 PF09403 FadA: Adhesion protei 21.2 2.5E+02 0.0055 22.9 5.2 25 178-202 53-77 (126)
214 PF05680 ATP-synt_E: ATP synth 21.1 3.3E+02 0.0071 20.8 5.5 40 158-198 18-61 (86)
215 PF04568 IATP: Mitochondrial A 21.1 2.6E+02 0.0055 22.1 5.0 7 192-198 88-94 (100)
216 TIGR01069 mutS2 MutS2 family p 21.1 2.2E+02 0.0047 29.4 5.8 11 106-116 425-435 (771)
217 PF06472 ABC_membrane_2: ABC t 21.1 5.7E+02 0.012 22.4 8.5 47 144-190 166-212 (281)
218 PF01534 Frizzled: Frizzled/Sm 21.0 2.7E+02 0.0058 25.9 5.9 39 136-174 176-214 (328)
219 KOG2504 Monocarboxylate transp 21.0 4.3E+02 0.0094 25.6 7.6 30 102-131 413-442 (509)
220 PF06749 DUF1218: Protein of u 20.9 1.8E+02 0.0038 22.1 4.0 30 35-64 31-60 (97)
221 CHL00019 atpF ATP synthase CF0 20.9 4.9E+02 0.011 21.5 10.6 51 150-203 31-81 (184)
222 PF00357 Integrin_alpha: Integ 20.9 42 0.00091 18.5 0.4 11 165-175 2-12 (15)
223 TIGR01062 parC_Gneg DNA topois 20.9 1.4E+02 0.003 31.0 4.4 31 173-203 420-450 (735)
224 PF04521 Viral_P18: ssRNA posi 20.8 1E+02 0.0023 25.4 2.9 21 180-200 75-95 (120)
225 COG4191 Signal transduction hi 20.6 8.3E+02 0.018 25.2 9.6 17 180-196 330-347 (603)
226 TIGR03321 alt_F1F0_F0_B altern 20.5 5.7E+02 0.012 22.2 9.8 60 141-201 8-67 (246)
227 TIGR03782 Bac_Flav_CT_J Bacter 20.5 3.5E+02 0.0075 25.8 6.6 15 184-198 99-113 (322)
228 PRK09174 F0F1 ATP synthase sub 20.5 5.6E+02 0.012 22.1 9.5 62 139-202 55-116 (204)
229 PF10393 Matrilin_ccoil: Trime 20.4 2.8E+02 0.0061 19.2 4.6 18 183-200 29-46 (47)
230 PF07701 HNOBA: Heme NO bindin 20.1 4.6E+02 0.01 22.8 6.9 44 158-201 165-208 (219)
231 COG3167 PilO Tfp pilus assembl 20.1 2E+02 0.0044 25.8 4.7 33 168-200 61-96 (211)
232 PRK09848 glucuronide transport 20.1 3E+02 0.0065 24.7 5.9 14 181-194 433-446 (448)
233 PF10458 Val_tRNA-synt_C: Valy 20.1 2.1E+02 0.0045 20.2 4.0 26 177-202 4-29 (66)
234 PF07444 Ycf66_N: Ycf66 protei 20.1 3.9E+02 0.0085 20.5 5.7 63 47-109 5-68 (84)
No 1
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=99.84 E-value=9.9e-21 Score=150.09 Aligned_cols=128 Identities=23% Similarity=0.436 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccCCCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028694 45 RCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAV 124 (205)
Q Consensus 45 r~~s~VTvl~ALlciavnvis~v~sf~~~~difdgIlRcY~I~~allvilaEtEW~~i~kf~kvLe~Wi~RG~lqiFVgv 124 (205)
+++.++++++|++++++.+.+++.. .++.+.++++|.++||++++++|.+|.++.|+++||.+|.|||++|+|+|+
T Consensus 4 ~~~r~~~~~~~~~~i~~gi~~l~~~----~~~~~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~ 79 (136)
T PF08507_consen 4 NIFRILNIIAGILLILAGILSLFNS----FSFSSFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGT 79 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHH
Confidence 5677888888888888888887753 444467899999999999999999999999999999999999999999999
Q ss_pred HhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 028694 125 MTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLE 187 (205)
Q Consensus 125 mt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe 187 (205)
|+... .++..+++++|+.+|++|++.|+.|.....+ ..|++++...+++|.|
T Consensus 80 l~~~~----------~~~~~i~g~~~~~~G~~~i~l~~~~~~~~~~-~~r~~~~~~~~~~~~~ 131 (136)
T PF08507_consen 80 LCLGQ----------SILSIIIGLLLFLVGVIYIILGFFCPIKEPE-SMREQEIALSSQQDNE 131 (136)
T ss_pred HHHhh----------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCch-hcCccccccccccccc
Confidence 99987 7899999999999999999999999988443 3444444444455544
No 2
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.02 E-value=1.2 Score=36.58 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 028694 116 GMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGC 167 (205)
Q Consensus 116 G~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~ 167 (205)
|++.+=.|+.++.+... .--.++-.+.+..++|.|++-+.+|+.|+-.
T Consensus 15 gilli~~gI~~Lv~~~~----~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~ 62 (191)
T PF04156_consen 15 GILLIASGIAALVLFIS----GLGALISFILGIALLALGVVLLSLGLLCLLS 62 (191)
T ss_pred HHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655555555554321 0235778888999999999999999998855
No 3
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=92.42 E-value=0.93 Score=36.58 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 149 MLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 149 ~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
=+|+=+++|.++|.+=+.=..|+..+.++.+++.+.++++|+.+-+||+..+...
T Consensus 77 ell~E~fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 77 ELLGEAFIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666676665444444465666666666666899999999999999887654
No 4
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=91.06 E-value=5.2 Score=30.54 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQK----EMTRDQAVKDLEDLER 191 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~k----~~~reqa~kdLe~l~~ 191 (205)
+..+..+++|++.++.|....+++.+++ +.++++.++|.+-+..
T Consensus 73 ~a~liv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~~~l~~d~~~lk~ 120 (121)
T PF07332_consen 73 LAFLIVAGLYLLLALILLLIGRRRLRRAPPPFEETIAELKEDIAALKE 120 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Confidence 4667789999999999998777665522 6678888888887754
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=88.05 E-value=4.7 Score=33.74 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+...|-.-.-|.++..+++|+++.-+=..-+.+.- +.++++..+++++-++.++|.++++..+
T Consensus 26 d~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l---~~R~~~I~~~l~~Ae~~~~eA~~~~~ey 88 (181)
T PRK13454 26 DFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVL---AERQGTITNDLAAAEELKQKAVEAEKAY 88 (181)
T ss_pred cHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44456666667788888888888666554444333 2334444566666666666666555443
No 6
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=87.57 E-value=4.6 Score=30.89 Aligned_cols=25 Identities=40% Similarity=0.588 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 028694 142 LQNIASYMLLACGVVYVISGILCIGCIK 169 (205)
Q Consensus 142 ~~~IaS~~Ll~cG~vYvl~GlLC~g~lK 169 (205)
+.++.=|..|+.|++| |+.+-..|+
T Consensus 9 ~inv~RySaL~~Gv~Y---G~~~~~~L~ 33 (86)
T PF05680_consen 9 LINVLRYSALGLGVVY---GAYHQRYLK 33 (86)
T ss_pred chHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 5678889999999999 666666666
No 7
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=87.36 E-value=3.6 Score=35.43 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 142 LQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 142 ~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
|-.-.-|.++..+++|+++.-+=.+-+++.- ++++++..+||++-++.|+|.+.++..+
T Consensus 52 ~~~~l~w~~I~FliL~~lL~k~~~~pI~~vL---e~R~~~I~~~L~~Ae~~k~eAe~~~~~y 110 (204)
T PRK09174 52 YASQLLWLAITFGLFYLFMSRVILPRIGGII---ETRRDRIAQDLDQAARLKQEADAAVAAY 110 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444457777888888887666554444333 3334455666666666666666665544
No 8
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=86.31 E-value=5.3 Score=27.63 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028694 180 DQAVKDLEDLERRREEL 196 (205)
Q Consensus 180 eqa~kdLe~l~~rreel 196 (205)
.+.+|+++++|++-++|
T Consensus 51 ~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 51 RRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34455666666655543
No 9
>PRK08156 type III secretion system protein SpaS; Validated
Probab=84.58 E-value=12 Score=35.34 Aligned_cols=90 Identities=11% Similarity=0.172 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHH
Q 028694 109 LEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLE 187 (205)
Q Consensus 109 Le~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe 187 (205)
+=||+.++.+.-+++....... ..+.........+++.++++|++.+++=.-.=|....|+ ..+++...+|..
T Consensus 147 v~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~K 220 (361)
T PRK08156 147 TAYVFWKNYKKEIFSQLNGNIV------GLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYK 220 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3455555555555544433322 234445566677788888888888887766544444444 444555555544
Q ss_pred H------HHHHHHHHHHHHhhhc
Q 028694 188 D------LERRREELEQLLVAER 204 (205)
Q Consensus 188 ~------l~~rreele~lL~~~~ 204 (205)
| +..||.++.+.+...|
T Consensus 221 e~EGdP~iK~r~R~~~re~a~~r 243 (361)
T PRK08156 221 EQEGNPEIKSKRREAHQEILSEQ 243 (361)
T ss_pred hccCCHHHHHHHHHHHHHHHHhH
Confidence 4 5567777777766543
No 10
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=83.80 E-value=8.7 Score=32.39 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 144 NIASYMLLACGVVYVISGILCIGCIKRARQQK----EMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 144 ~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k----~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.-.-|.++..+++|+++.-.=.+.+.+--.++ +..-++|++.-++.+.-+++.|+.|.
T Consensus 11 sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~ 72 (155)
T PRK06569 11 SQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEID 72 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457888999999999887776665443332 22334444444444444444444443
No 11
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.88 E-value=2.6 Score=42.73 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 028694 81 FRCYAVVIAFFVALAETEWQFVLKFTKVLEYW 112 (205)
Q Consensus 81 lRcY~I~~allvilaEtEW~~i~kf~kvLe~W 112 (205)
||+=|++|++|+|++=.- ..++=|+.+--.|
T Consensus 68 ~~~~~~~~~~~~~~~~~~-~d~~~~~~~p~~~ 98 (697)
T PF09726_consen 68 FKYQGLAFSVFFVCIAFT-SDLICLFFIPVHW 98 (697)
T ss_pred HhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 444455555555554333 3333333333333
No 12
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=81.52 E-value=25 Score=28.84 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028694 183 VKDLEDLERRREELEQLLV 201 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL~ 201 (205)
.++|++.++.++|.++++.
T Consensus 56 ~~~l~~A~~~~~ea~~~~~ 74 (174)
T PRK07352 56 LQALKEAEERLRQAAQALA 74 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 13
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=80.91 E-value=20 Score=33.59 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhhc
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAER 204 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~~ 204 (205)
.......+...+++.+++++++.|++=...=|....|+ .-+|+...+|..| +..||.++.+.+...|
T Consensus 182 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~re~a~~~ 255 (359)
T PRK05702 182 ALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQREMARRR 255 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhH
Confidence 44556677777888888899998888776645444444 4445555555554 5567777777766543
No 14
>PRK09108 type III secretion system protein HrcU; Validated
Probab=80.12 E-value=22 Score=33.21 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhh
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAE 203 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~ 203 (205)
.+.+...+...+++.+.++|++.+++=...=|....|+ .-+++...+|..| ...||.++.+.+...
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re~a~~ 249 (353)
T PRK09108 177 LAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLARELAFA 249 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 44556667777788888899998888776655444444 4455555555544 556777777766654
No 15
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=79.65 E-value=13 Score=30.04 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 147 SYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 147 S~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
-|.++...++|+++.-+-.+-+++.-. +++++..+++++-++.++|.++++..+
T Consensus 12 ~~~~i~Flil~~ll~~~l~~pi~~~l~---~R~~~I~~~l~~A~~~~~ea~~~~~e~ 65 (164)
T PRK14471 12 FWQTILFLILLLLLAKFAWKPILGAVK---EREDSIKNALASAEEARKEMQNLQADN 65 (164)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777766666655543332 334445666666666666666665544
No 16
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=79.50 E-value=20 Score=35.82 Aligned_cols=67 Identities=9% Similarity=0.202 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhhc
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAER 204 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~~ 204 (205)
......+...++.+.+..+|++.+++=...=|..+.|+ +-+||...+|-.| ...||.++.+.+...|
T Consensus 438 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~~~~~ 511 (609)
T PRK12772 438 IITELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREMAMQR 511 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Confidence 34455666777788888899998887776655454444 4456666555554 5677778887776654
No 17
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=79.34 E-value=24 Score=32.88 Aligned_cols=88 Identities=14% Similarity=0.253 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH-
Q 028694 111 YWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED- 188 (205)
Q Consensus 111 ~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~- 188 (205)
||+-++.+.-+.+...... .........+...+++.+++++++.+++=...=|....|+ ..+|+...+|..|
T Consensus 154 ~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~ 227 (347)
T TIGR00328 154 YFVLRNSLGELLSLSLYSL------VQAITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQS 227 (347)
T ss_pred HHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 4444444444444333222 2244556667777788888888888887766544444444 4455555555554
Q ss_pred -----HHHHHHHHHHHHhhhc
Q 028694 189 -----LERRREELEQLLVAER 204 (205)
Q Consensus 189 -----l~~rreele~lL~~~~ 204 (205)
...||.++.+.+...|
T Consensus 228 EGdP~iK~rrR~~~re~a~~~ 248 (347)
T TIGR00328 228 EGDPEVKGRIRQMQREAARRR 248 (347)
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 5567777777776543
No 18
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=78.85 E-value=26 Score=32.50 Aligned_cols=67 Identities=15% Similarity=0.381 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhhc
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAER 204 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~~ 204 (205)
...........+++.+.+++++.|++=...=|....++ ..+++...+|-.| ...||.++.+.+...|
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~re~~~~~ 247 (342)
T TIGR01404 174 LAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQEILSEQ 247 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Confidence 44555666677777888888888887766655444444 4445555544444 5567777777766543
No 19
>PRK06298 type III secretion system protein; Validated
Probab=78.83 E-value=58 Score=30.58 Aligned_cols=92 Identities=12% Similarity=0.253 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHH
Q 028694 107 KVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKD 185 (205)
Q Consensus 107 kvLe~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kd 185 (205)
.+.=||+-++.+.-+.+......++ .......+.-.+++.++++|++.|++=...=|....|+ .-+|+...+|
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE 224 (356)
T PRK06298 151 ALILYIVLKNRVPLIIETAGVPPLV------TAQIFKEILYKAVTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQE 224 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4455667777766666654433332 34445566667788888899998888776655444444 4455555555
Q ss_pred HHH------HHHHHHHHHHHHhhhc
Q 028694 186 LED------LERRREELEQLLVAER 204 (205)
Q Consensus 186 Le~------l~~rreele~lL~~~~ 204 (205)
-.+ ...||.++.+.+...|
T Consensus 225 ~K~~EGdP~iK~rrR~~~re~~~~~ 249 (356)
T PRK06298 225 FKDTEGNPEIKGRRRQIAQEIAYED 249 (356)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHhH
Confidence 544 5567777777766543
No 20
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=78.59 E-value=27 Score=32.75 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhhc
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAER 204 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~~ 204 (205)
......+...+++..|.++|++.+++=...=|....|+ ..+++...+|-.| ...||.++.+.+...|
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~~re~~~~~ 257 (358)
T PRK13109 184 LPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSLAQDRARNR 257 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Confidence 34456667778888889999998888776655544444 4455555555444 5567777777766543
No 21
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=78.30 E-value=8.2 Score=26.32 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
-+++|++|....++.+..+++|+..-++|++.+..
T Consensus 16 A~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 16 ARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999999999877654
No 22
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=78.27 E-value=17 Score=29.82 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+.++++..++|++-++.|+|.|.++..+
T Consensus 40 e~R~~~I~~~l~~Ae~~k~eAe~~~~~~ 67 (167)
T PRK14475 40 DAYAAKIQAELDEAQRLREEAQALLADV 67 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666788888888888888777665
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=77.55 E-value=18 Score=24.99 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHhHHHHHHHHHHH
Q 028694 176 EMTRDQAVKDLEDL 189 (205)
Q Consensus 176 ~~~reqa~kdLe~l 189 (205)
+++-++++||++++
T Consensus 54 ~k~l~~le~e~~~l 67 (68)
T PF06305_consen 54 RKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHhc
Confidence 44445556665554
No 24
>PF06151 Trehalose_recp: Trehalose receptor; InterPro: IPR009318 In Drosophila, taste is perceived by gustatory neurons located in sensilla distributed on several different appendages throughout the body of the animal. This family represents the taste receptor sensitive to trehalose [,].
Probab=77.29 E-value=53 Score=31.25 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028694 40 LLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEY 111 (205)
Q Consensus 40 ~L~~cr~~s~VTvl~ALlciavnvis~v~sf~~~~difdgIlRcY~I~~allvilaEtEW~~i~kf~kvLe~ 111 (205)
+.-..-+.+.++.+.+++..+..+.-+..+.-+-+++..=++-+.+++.+++++-.=.+|+.+|+.|.-.|-
T Consensus 56 w~S~r~~YSl~~l~~~~i~~~~~i~~~~~~gl~~~~~~~liFy~~~~~~~i~Fl~LAr~Wp~lm~~W~~vE~ 127 (414)
T PF06151_consen 56 WRSLRTLYSLLFLLGALIMFVLSIYRVFRSGLNFNNIASLIFYVVCLLISILFLRLARRWPQLMREWSRVEQ 127 (414)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445566777777777777666665554432222233444478999999999999999999999999998884
No 25
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=77.21 E-value=64 Score=30.18 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhh
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAE 203 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~ 203 (205)
.........-.+++.+.+++++.|++=...=|....|+ .-+++...+|..| +..||.++.+.+...
T Consensus 175 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~re~~~~ 247 (349)
T PRK12721 175 GLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSEIQSG 247 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 33445556666677788888888887665544444444 4445555555544 556666776666544
No 26
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.53 E-value=15 Score=30.93 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 147 SYMLLACGVV-YVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 147 S~~Ll~cG~v-Yvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
.|...+.|.| =++.|.+-.+..+++..++++...+.+|--.+|+.+|+||+.-.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HF 61 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHF 61 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555533 35678888888888776666655556666666888888887643
No 27
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=75.43 E-value=24 Score=29.58 Aligned_cols=56 Identities=7% Similarity=0.006 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 145 IASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 145 IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
-.-|.+++..++++++.-.--+-+.+.-. .++++...+|++-++-|+|.++++..+
T Consensus 6 ~~fwq~I~FlIll~ll~kfawkPI~~~Le---eR~~~I~~~Ld~Ae~~r~eA~~l~~e~ 61 (154)
T PRK06568 6 ESFWLAVSFVIFVYLIYRPAKKAILNSLD---AKILEVQEKVLKAEKLKEDAALLFEQT 61 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666555555554443 334556777888888888887777654
No 28
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=74.95 E-value=16 Score=29.38 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=19.1
Q ss_pred HHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHh
Q 028694 172 RQQKEMTRDQAVKDLEDLER-----RREELEQLLV 201 (205)
Q Consensus 172 rq~k~~~reqa~kdLe~l~~-----rreele~lL~ 201 (205)
|+++..-|++|.++|.++++ .=.++..+|.
T Consensus 44 ~~~~~~yrr~Al~~L~~l~~~~~~~~~~~l~~LLK 78 (146)
T PF14316_consen 44 RWRRNRYRREALRELAQLESSDDAEWLAALNELLK 78 (146)
T ss_pred HHHccHHHHHHHHHHHHccccCcHHHHHHHHHHHH
Confidence 33334457789999999975 3445555553
No 29
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=74.83 E-value=27 Score=28.29 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 179 RDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+++..++|++-++.++|.+.++..+
T Consensus 41 ~~~I~~~l~~Ae~~~~ea~~~~~e~ 65 (164)
T PRK14473 41 TRRIEESLRDAEKVREQLANAKRDY 65 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666554
No 30
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=74.35 E-value=26 Score=28.90 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
|.++...++|+++.-+=.+-+++.- +.++++..+++++-++.++|.+.++..+
T Consensus 23 ~~iInFliL~~lL~~~l~~pi~~~l---~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (173)
T PRK13453 23 VTVLTFIVLLALLKKFAWGPLKDVM---DKRERDINRDIDDAEQAKLNAQKLEEEN 75 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444333222 2334444566666666666666655544
No 31
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=72.60 E-value=53 Score=29.87 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCcccchhhHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHH
Q 028694 101 FVLKFTKVLEYWVARGMLQIFVAVMTRAF----PDYSAKQKDLILLQNIASYMLLACGVVYVI---SGILCIGCIKRARQ 173 (205)
Q Consensus 101 ~i~kf~kvLe~Wi~RG~lqiFVgvmt~~~----p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl---~GlLC~g~lKr~rq 173 (205)
.+-|.=..|+.|..|=.+++. |+.+++. -.+++-+ -|+.|+.++ ++.|.+||+ +-=+|--.+.|++.
T Consensus 30 ~~~~~qs~l~~~~~r~tv~sl-Al~~l~~S~iy~~~~~y~----~~~~It~~l-lgs~slymfrwal~~lye~r~~r~~~ 103 (251)
T COG5415 30 ALKKSQSILSQWQSRLTVYSL-ALTVLALSYIYWEYHGYR----PYLVITALL-LGSGSLYMFRWALTKLYEFRNNRRLR 103 (251)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhhccccc----hhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666788999999777663 4444432 2222222 344555544 447888886 44567777777776
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 028694 174 QKEMTRDQAVKDLEDLERRR 193 (205)
Q Consensus 174 ~k~~~reqa~kdLe~l~~rr 193 (205)
+=++-|+.-+|.|+-|..+.
T Consensus 104 ~L~kLra~~rk~l~~LK~e~ 123 (251)
T COG5415 104 KLAKLRAIHRKKLEKLKEET 123 (251)
T ss_pred hHHHHHHHHHHHHHHHhhhh
Confidence 66666666667776665554
No 32
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=72.01 E-value=34 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 177 MTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 177 ~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+++++..+++++-++.++|.+.++..+
T Consensus 36 ~R~~~I~~~l~~Ae~~~~ea~~~~~~~ 62 (140)
T PRK07353 36 EREDYIRTNRAEAKERLAEAEKLEAQY 62 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666665544
No 33
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.64 E-value=33 Score=37.74 Aligned_cols=95 Identities=22% Similarity=0.385 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Q 028694 87 VIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYM-LLACGVVYVISGILCI 165 (205)
Q Consensus 87 ~~allvilaEtEW~~i~kf~kvLe~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~-Ll~cG~vYvl~GlLC~ 165 (205)
++++|+..---.|.-||-- |. -++-..-.|-. |+|- |++.-+.|+. ....=++-|+.|+.--
T Consensus 1324 lmSLFvLaSkDgWv~ImyD----------gl----davavdqqPI~--nhnp-wmllYfIsfllIvsffVlnmfVgvvve 1386 (1956)
T KOG2302|consen 1324 LMSLFVLASKDGWVNIMYD----------GL----DAVAVDQQPIL--NHNP-WMLLYFISFLLIVSFFVLNMFVGVVVE 1386 (1956)
T ss_pred HHHHHHHhcccchhhhhcc----------ch----hhceeeeeccc--cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888876521 11 01111111211 3332 2233334443 3444566677787766
Q ss_pred HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 166 GCIK-RARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 166 g~lK-r~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
-+.| |.+|++|..|++-+|-|+++||+|.+-|+
T Consensus 1387 nfhKcrqhqe~EeArRreEKrLrrlekkrR~Aq~ 1420 (1956)
T KOG2302|consen 1387 NFHKCRQHQEAEEARRREEKRLRRLEKKRRAAQR 1420 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 6666 23344455577779999999999986553
No 34
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.43 E-value=45 Score=31.86 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhhc
Q 028694 136 QKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAER 204 (205)
Q Consensus 136 ~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~~ 204 (205)
...+..+.+++.++++.|+++.++.+++=+-.=+....|+ ..+|+...+|..+ ...|+.++.+.++.+|
T Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~liia~~D~~~qr~~~~k~lkMtKqEVKdE~K~sEGdPeVKsr~Rq~~re~a~~r 255 (363)
T COG1377 180 VAALSIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTKQEVKDEYKQSEGDPEVKSRIRQMQREIARRR 255 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHhhccCChhhhHHHHHHHHHHHHHH
Confidence 3466788899999999999999999988776633333333 4557777666665 4466777777666554
No 35
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=71.37 E-value=42 Score=34.38 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhh
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVA 202 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~ 202 (205)
.+.....+.-.+++.+++++++.|++=...=|....++ ..+++...+|-.| +..||.++.+.+..
T Consensus 473 il~~i~~ll~~Lvl~vllvllVIAiiD~~~QR~~f~KkLKMSKQEVKdE~KEsEGDPeIKaRRRqlqREmar 544 (646)
T PRK12773 473 AVALVMNSSFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMN 544 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 34556667778888899999999988776644444443 4456666555554 55677777777764
No 36
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=71.25 E-value=7.2 Score=36.21 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
-.|-||||..++|.+.-+++.|++|-+||-.+..
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~ 272 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQAS 272 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999977654
No 37
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=71.24 E-value=58 Score=26.96 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028694 138 DLILLQNIASYMLLACGVVYV 158 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYv 158 (205)
...+++ +..+.++..-+.|+
T Consensus 27 ~t~~~~-~inflil~~iL~~f 46 (184)
T PRK13455 27 NTDFVV-TLAFLLFIGILVYF 46 (184)
T ss_pred chHHHH-HHHHHHHHHHHHHH
Confidence 334454 45565555555555
No 38
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=70.69 E-value=13 Score=25.88 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
..+.++.++++++++.+.++|++.+.
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666665543
No 39
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=69.46 E-value=47 Score=30.66 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028694 81 FRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPD 131 (205)
Q Consensus 81 lRcY~I~~allvilaEtEW~~i~kf~kvLe~Wi~RG~lqiFVgvmt~~~p~ 131 (205)
-..|..+.|+++.+. |-.++|+.++-. -+..|..++.++.++
T Consensus 293 ~~~~~~l~a~~vfl~---~lrll~~l~f~~------~~~~~~~tl~~a~~~ 334 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLL---WLRLLKLLRFNR------RLSLLSRTLRRAAKD 334 (425)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhheeecc------hHHHHHHHHHHHHHH
Confidence 466777777776665 444444444332 234666666665554
No 40
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=68.48 E-value=76 Score=27.23 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 179 RDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+++..+++++.++.|+|.++++..+
T Consensus 81 ~~~I~~~L~~Ae~~~~eA~~~l~e~ 105 (205)
T PRK06231 81 KELIEAEINQANELKQQAQQLLENA 105 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666655555555443
No 41
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=68.24 E-value=51 Score=26.12 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 147 SYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 147 S~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
.|.++...++|+++.-+=.+-+++.-.+ ++++..+++++.++.+++.+.++..
T Consensus 8 ~~~~i~Flil~~il~~~~~~pi~~~l~~---R~~~I~~~l~~a~~~~~~a~~~~~e 60 (156)
T PRK05759 8 IGQLIAFLILVWFIMKFVWPPIMKALEE---RQKKIADGLAAAERAKKELELAQAK 60 (156)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666655554444433322 2233344555555555554444433
No 42
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=68.17 E-value=41 Score=24.04 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=9.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 028694 176 EMTRDQAVKDLEDLERRREELE 197 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele 197 (205)
..+.+++++++++++.+-++|+
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~ 51 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQ 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 43
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=67.68 E-value=78 Score=27.04 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=58.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhhh--hhhe--ec----cCCCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 028694 37 ADPLLVVCRCYSVLTSLTALLCLAVNVL--SAIR--SF----KNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKV 108 (205)
Q Consensus 37 ~d~~L~~cr~~s~VTvl~ALlciavnvi--s~v~--sf----~~~~difdgIlRcY~I~~allvilaEtEW~~i~kf~kv 108 (205)
++++|+++.+...+++..=++++..-.. +.+. ++ +...+-...-|+.| .|.+|.+=.+.
T Consensus 50 ~~~LL~~f~~~TallV~v~l~almisT~iL~~I~~~~~~~~~~~~~~sP~~~f~~~----------cE~~W~~s~~l--- 116 (175)
T PF07856_consen 50 PPPLLIAFAVVTALLVAVHLFALMISTCILPSIEAVSFIHNYSPVPPSPHRRFHRY----------CELAWRFSTVL--- 116 (175)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCCCchHHHHHH----------HHHHHHHHHHH---
Confidence 7889999888888877766665543222 2121 22 11112223347777 89999876655
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 028694 109 LEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCI 165 (205)
Q Consensus 109 Le~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~ 165 (205)
|+.-.++-+.+..+.--... ..-.--+++-.++++++++.+..+...
T Consensus 117 -------Gi~lFL~~l~l~~WIKF~~~---~~~~aa~~~t~i~~~~~li~~~~~~~~ 163 (175)
T PF07856_consen 117 -------GIPLFLAELALLGWIKFWDS---PSPAAAIAITAILVPVLLIFVVFIQHF 163 (175)
T ss_pred -------HHHHHHHHHHHHHheeehhc---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666554331111 011123445556666666666554443
No 44
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=67.10 E-value=43 Score=23.81 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhhcc---CcccchhhHHHHHH-----HHHHHHHHHHHHHHHHHHHhH
Q 028694 112 WVARGMLQIFVAVMTRAFP---DYSAKQKDLILLQN-----IASYMLLACGVVYVISGILCI 165 (205)
Q Consensus 112 Wi~RG~lqiFVgvmt~~~p---~~~~~~~~~~l~~~-----IaS~~Ll~cG~vYvl~GlLC~ 165 (205)
.++||+.|..+|......- +.++++.....++. ...++|..+|+.-+..|+.++
T Consensus 4 ~~~~givy~~lg~~a~~~a~~~~~~~~~~~~~~~~~l~~~p~G~~ll~~vg~gli~~gi~~~ 65 (73)
T PF06724_consen 4 YAARGIVYGALGYLALQAALGGGGSSDQGSQGALAWLLEQPFGRWLLGAVGLGLIGYGIWQF 65 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5789999999998886532 12223333333333 446788888988888888887
No 45
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=66.68 E-value=42 Score=27.58 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028694 181 QAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 181 qa~kdLe~l~~rreele~lL~ 201 (205)
+..+++++-++.++|.++++.
T Consensus 51 ~I~~~l~~Ae~~~~eA~~~~~ 71 (173)
T PRK13460 51 GVQNDINKASELRLEAEALLK 71 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 46
>PF10233 Cg6151-P: Uncharacterized conserved protein CG6151-P; InterPro: IPR019365 This is a family of small, less than 200 residue long, proteins which are conserved from fungi to humans. The function of these proteins are unknown. The entry contains Golgi membrane proteins involved in vesicular trafficking that belong to the TVP18 family and the calcium channel flower protein from Drosophila. The flower proteins are calcium channels that regulates synaptic endocytosis and hence couples exo- with endocytosis. Isoform A and isoform B are mainly required in the nervous system and necessary in photoreceptor cells [].
Probab=66.26 E-value=68 Score=25.86 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHH----H
Q 028694 80 IFRCYAVVIAFFVALAETEWQFVLKFTK----------VLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQN----I 145 (205)
Q Consensus 80 IlRcY~I~~allvilaEtEW~~i~kf~k----------vLe~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~----I 145 (205)
++=.+.++.+.++++.|.- +..|+++ -.+.+--|+.+|.-.++.-+ ..+--+ +
T Consensus 26 i~gi~~i~~gfvv~~iE~P--~l~~~c~~s~~f~~~i~k~~~n~~Ra~~Y~~maiv~~-----------isl~~~~tSLi 92 (113)
T PF10233_consen 26 IFGIIMIVSGFVVLFIEAP--FLCRICPFSQKFDDFIRKFSTNWMRAALYCVMAIVPW-----------ISLCFGATSLI 92 (113)
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHhCCchhHHHHHHHHhccchHHHHHHHHHHHHHH-----------HHHHHhhHHHH
Confidence 3566788889999998863 4444444 34233457888887777652 111122 4
Q ss_pred HHHHHHH-HHHHHHHHHH
Q 028694 146 ASYMLLA-CGVVYVISGI 162 (205)
Q Consensus 146 aS~~Ll~-cG~vYvl~Gl 162 (205)
++-+.++ .|++|-++++
T Consensus 93 ~~av~f~~tg~~Yglaal 110 (113)
T PF10233_consen 93 GSAVFFAITGVCYGLAAL 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 4555666 8888888775
No 47
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=66.23 E-value=24 Score=35.09 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhhhheeccCCCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 028694 40 LLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQ 119 (205)
Q Consensus 40 ~L~~cr~~s~VTvl~ALlciavnvis~v~sf~~~~difdgIlRcY~I~~allvilaEtEW~~i~kf~kvLe~Wi~RG~lq 119 (205)
.+.++++-.+.|++..+..+.-|.....+ |. ...+..+.+.||+ ..++|.+|..+-==.-+.=+|+-|-..|
T Consensus 174 l~~~~~~a~~~~~~~v~~~~~~~~~~~~~-~v--~~~~~~~~~~~Gl-----~~l~~~~W~rL~vP~vl~vFWl~~f~~q 245 (508)
T PF13705_consen 174 LLIVHNFALWLTILEVLYFILSNYPVPYR-FV--KTAYRHMYENYGL-----QALVESLWNRLRVPEVLRVFWLTRFAVQ 245 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHH-HH--HHHHHHHHHHhhH-----HHHHHHHHhhhcchhhHHHHHHHHHHHH
Confidence 55555665555555555544444333221 11 1112345667764 5789999997755555666999999999
Q ss_pred HHH
Q 028694 120 IFV 122 (205)
Q Consensus 120 iFV 122 (205)
+..
T Consensus 246 ~~~ 248 (508)
T PF13705_consen 246 LYI 248 (508)
T ss_pred Hhe
Confidence 876
No 48
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=66.10 E-value=55 Score=26.35 Aligned_cols=18 Identities=11% Similarity=0.254 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028694 183 VKDLEDLERRREELEQLL 200 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL 200 (205)
.+++++-++.+++.++++
T Consensus 42 ~~~l~~A~~~~~eA~~~~ 59 (159)
T PRK13461 42 DNKIEKADEDQKKARELK 59 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 49
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=65.98 E-value=52 Score=27.01 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
|.++...++|+++.-+=.+-+++.- ++++++..+++++-++.++|.+.++..+
T Consensus 23 ~~~i~Flil~~lL~~~l~kpi~~~l---~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (175)
T PRK14472 23 WTAVTFVIVLLILKKIAWGPILSAL---EEREKGIQSSIDRAHSAKDEAEAILRKN 75 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333222 2333444555666666665555555443
No 50
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=65.94 E-value=1.2e+02 Score=28.76 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH
Q 028694 110 EYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED 188 (205)
Q Consensus 110 e~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~ 188 (205)
=||+.++.+.-+.+....... ..+.....+...+++.++++|++.+++=.-.=|....|+ ..+++...+|-.+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~ 233 (386)
T PRK12468 160 TGLFLWHNWPDMMRLIAAPPV------AALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKN 233 (386)
T ss_pred HHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHh
Confidence 355556655555544333222 233444556667788888888888877655433333333 3445555444444
Q ss_pred ------HHHHHHHHHHHHhhhc
Q 028694 189 ------LERRREELEQLLVAER 204 (205)
Q Consensus 189 ------l~~rreele~lL~~~~ 204 (205)
+..||.++.+.+...|
T Consensus 234 ~EGdP~iK~r~Rq~~re~a~~~ 255 (386)
T PRK12468 234 QEGDPHVKGRIRQQQRAMARRR 255 (386)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh
Confidence 5566777777665543
No 51
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.60 E-value=9 Score=34.23 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHh
Q 028694 171 ARQQKEMTRDQAVKDLEDLERRR-EELEQLLV 201 (205)
Q Consensus 171 ~rq~k~~~reqa~kdLe~l~~rr-eele~lL~ 201 (205)
++.+|+.+|++|.|+|++.-+|+ +.+|+.+.
T Consensus 126 sek~k~ElrekAkKelddwy~~~~ek~~k~~~ 157 (216)
T KOG4031|consen 126 SEKLKEELREKAKKELDDWYDQQNEKLEKTKA 157 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999999976655 44555543
No 52
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=64.81 E-value=69 Score=25.37 Aligned_cols=17 Identities=35% Similarity=0.974 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 028694 99 WQFVLKFTKVLEYWVAR 115 (205)
Q Consensus 99 W~~i~kf~kvLe~Wi~R 115 (205)
|.|++-+.-++=.|++=
T Consensus 4 ~~Fi~~~~~~~~~Wi~~ 20 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILL 20 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777653
No 53
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=63.53 E-value=52 Score=27.01 Aligned_cols=52 Identities=23% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHH
Q 028694 146 ASYMLLACGVVYVISGILCIGCIKRARQQKEMT----------RDQAVKDLEDLERRREELE 197 (205)
Q Consensus 146 aS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~----------reqa~kdLe~l~~rreele 197 (205)
..+.+++.++.-+..|....+.-++.+..-+.+ -.||++|..-|.+.|+.+|
T Consensus 30 sg~~~~~~~~~~~~~G~y~~~~~~r~~r~~~~E~~~ar~al~PlLqAE~DR~~lr~~~~~~~ 91 (130)
T PF06212_consen 30 SGWTMFAGGAGIMAYGFYKVGQGNRERRELKREKRWARIALLPLLQAEEDRRYLRRLKANRE 91 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345556655555666666665544333332222 2478888777766665543
No 54
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.25 E-value=38 Score=27.11 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=22.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 159 ISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 159 l~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~l 199 (205)
+.|.++....++..+++..-+++..+--++|++.|.|++.-
T Consensus 11 iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~H 51 (128)
T PF06295_consen 11 IIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEVNDH 51 (128)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776666554444333344444444566666666653
No 55
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=63.13 E-value=67 Score=25.84 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 179 RDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+++..+++++-++.+++.+.++..+
T Consensus 35 ~~~I~~~l~~Ae~~~~eA~~~~~~~ 59 (159)
T PRK09173 35 ADRIKNELAEARRLREEAQQLLAEY 59 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 56
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=62.69 E-value=56 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 179 RDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~~ 202 (205)
+++..++|++-++.++|-++++..
T Consensus 38 ~~~I~~~l~~Ae~~~~eA~~~~~e 61 (250)
T PRK14474 38 QQRIANRWQDAEQRQQEAGQEAER 61 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555554443
No 57
>PF12086 DUF3563: Protein of unknown function (DUF3563); InterPro: IPR021946 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 50 amino acids in length. This protein has conserved AYL and DLE sequence motifs.
Probab=62.61 E-value=14 Score=27.04 Aligned_cols=40 Identities=38% Similarity=0.578 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHH
Q 028694 156 VYVISGILCIGCIKRARQQKEMTRDQA----VKDLEDLERRREELE 197 (205)
Q Consensus 156 vYvl~GlLC~g~lKr~rq~k~~~reqa----~kdLe~l~~rreele 197 (205)
||+++-+.+ +++..-..-+.+|+.| .-|+-+||+|-.+||
T Consensus 1 m~l~s~l~~--~L~~l~~~~~~~r~eaYLA~s~D~~DLErRmr~le 44 (59)
T PF12086_consen 1 MYLMSRLFE--FLKKLFERSERERREAYLAQSTDIYDLERRMRELE 44 (59)
T ss_pred CchHHHHHH--HHHHhccHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 355666654 3555555555555555 679999999999998
No 58
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=62.60 E-value=29 Score=23.22 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 028694 115 RGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVI 159 (205)
Q Consensus 115 RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl 159 (205)
+|.+.+..|+++...|+. ....+..+.+++++..|+..++
T Consensus 2 ~Gil~iv~Gi~~l~~p~~-----~~~~~~~i~g~~~i~~Gi~~l~ 41 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDA-----SLAALAIILGIWLIISGIFQLI 41 (72)
T ss_pred HHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 588889999999999885 2233344445555555544443
No 59
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=62.50 E-value=11 Score=31.37 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 028694 143 QNIASYMLLACGVVYVISGILCIGCIKRARQQKEMT 178 (205)
Q Consensus 143 ~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~ 178 (205)
-++.+-.+|..|.+-.+.|.+|-...+|.|++|..+
T Consensus 80 ~~~~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 80 ISIFGPVLLSLGLMLLACSALCWKPIIRKKKKKRRE 115 (129)
T ss_pred hhhehHHHHHHHHHHHHhhhheehhhhHhHHHHhhh
Confidence 356788899999999999999987766555555443
No 60
>PF14163 SieB: Superinfection exclusion protein B
Probab=62.11 E-value=76 Score=25.44 Aligned_cols=73 Identities=22% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhccCc----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028694 117 MLQIFVAVMTRAFPDY----SAKQKDLILLQNIASYMLLACGVVYVISGIL--CIGCIKRARQQKEMTRDQAVKDLEDLE 190 (205)
Q Consensus 117 ~lqiFVgvmt~~~p~~----~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlL--C~g~lKr~rq~k~~~reqa~kdLe~l~ 190 (205)
++-++.|++... |+. -+-++....|+...+..++.|.+ |++..++ +.+.+++. +++...+++.+|.+++|.
T Consensus 4 ~l~i~~~~llf~-P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s-~li~~~~~~~~~~~~~~-~~~k~~~~~~~~~l~~Lt 80 (151)
T PF14163_consen 4 WLIIFSGLLLFL-PESLLEWLNLDKFEIKYQPWIGLIFLFSVS-YLIAQLLSFIYKEAKDR-YQRKRKKKKIEKKLNSLT 80 (151)
T ss_pred HHHHHHHHHHHC-CHHHHHHhCcchHHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC
Confidence 345666666533 221 11244556677777766665443 4444433 44444433 333334444566677765
Q ss_pred HH
Q 028694 191 RR 192 (205)
Q Consensus 191 ~r 192 (205)
..
T Consensus 81 ~~ 82 (151)
T PF14163_consen 81 PE 82 (151)
T ss_pred HH
Confidence 43
No 61
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=61.48 E-value=69 Score=25.95 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH---H-HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 149 MLLACGVVYVISGILCIGCIKRARQQ---K-EMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 149 ~Ll~cG~vYvl~GlLC~g~lKr~rq~---k-~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.++...++|++++-+=.+-+.+.-.+ + ..+-+.|++-.++.+..++|.|+.|.
T Consensus 28 ~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~ 84 (156)
T CHL00118 28 MALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELS 84 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555554444444332222 2 33334444444444444444444443
No 62
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=60.82 E-value=42 Score=25.19 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 028694 182 AVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 182 a~kdLe~l~~rreele~lL~~~ 203 (205)
....-+.|+.|=+-||+.|.++
T Consensus 47 L~~~a~rm~eRI~tLE~ILd~e 68 (75)
T TIGR02976 47 LYAKADRLEERIDTLERILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3455677999999999999876
No 63
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=60.75 E-value=34 Score=22.89 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 028694 146 ASYMLLACGVVYVISGILCIGCIKRARQ 173 (205)
Q Consensus 146 aS~~Ll~cG~vYvl~GlLC~g~lKr~rq 173 (205)
+.|+..+-|+-.++++.+.+..+.++|+
T Consensus 5 ~~yVW~sYg~t~l~l~~li~~~~~~~r~ 32 (45)
T TIGR03141 5 AFYVWLAYGITALVLAGLILWSLLDRRR 32 (45)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888889998888887765443
No 64
>PF04696 Pinin_SDK_memA: pinin/SDK/memA/ protein conserved region; InterPro: IPR006786 This conserved region is located adjacent and C-terminal to a N-terminal pinin/SKD domain IPR006787 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque []. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=60.56 E-value=33 Score=27.63 Aligned_cols=9 Identities=11% Similarity=0.659 Sum_probs=6.6
Q ss_pred HHHHHHHHH
Q 028694 165 IGCIKRARQ 173 (205)
Q Consensus 165 ~g~lKr~rq 173 (205)
+|+|.+.++
T Consensus 17 lGTL~kf~~ 25 (131)
T PF04696_consen 17 LGTLQKFKK 25 (131)
T ss_pred HHHHHHHHH
Confidence 578877776
No 65
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=60.35 E-value=81 Score=25.55 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 149 MLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 149 ~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
.++.--+.++++-+++-.++.+--.+- +.++++..+++++-++.++|.+.++..+
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~ 79 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQY 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443333 3344444666666666666666666554
No 66
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=60.02 E-value=63 Score=24.42 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQ 174 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~ 174 (205)
|.++..+++|++++-+=.+-+++.-.+
T Consensus 4 ~~~i~Flil~~~l~~~~~~pi~~~l~~ 30 (132)
T PF00430_consen 4 WQLINFLILFFLLNKFLYKPIKKFLDE 30 (132)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777766666654433
No 67
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=59.21 E-value=36 Score=23.67 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 028694 151 LACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREEL 196 (205)
Q Consensus 151 l~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreel 196 (205)
++..++.+..|+...-.+++..++.+.+-++..++-++|+++.+.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 5 LVIFLVFGISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666777777777666666666777777778887777776
No 68
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.98 E-value=66 Score=25.09 Aligned_cols=30 Identities=10% Similarity=-0.008 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 172 RQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 172 rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
..+.+.+.+++++++++++.+.++|++.+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566667777777766666543
No 69
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=58.93 E-value=90 Score=25.60 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 143 QNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 143 ~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
-++..++++..-+.|++..- =.+.+..++++=.++-+.|++..++.++..++.++.|..
T Consensus 24 ~~iinflIl~~lL~~fl~kp-I~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~ 82 (174)
T PRK07352 24 TNLINLAIVIGLLYYFGRGF-LGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQ 82 (174)
T ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444444443333 244555444333666666666666666666666666643
No 70
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=57.94 E-value=83 Score=24.04 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 028694 146 ASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLER 191 (205)
Q Consensus 146 aS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~ 191 (205)
.++.|++.-=+++++|+|-....| .-++++.+.++=+|-.+...+
T Consensus 23 l~~vll~LtPlfiisa~lSwkLaK-~ie~~ere~K~k~Kr~~~i~k 67 (74)
T PF15086_consen 23 LTTVLLILTPLFIISAVLSWKLAK-AIEKEEREKKKKAKRQANIAK 67 (74)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888999998887655 444444444444444444433
No 71
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=57.73 E-value=1e+02 Score=26.75 Aligned_cols=72 Identities=11% Similarity=0.168 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 028694 105 FTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMT 178 (205)
Q Consensus 105 f~kvLe~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~ 178 (205)
+++++-.=+.=|++=.|+|...-...+.. +.-..... ...-++...|-++-+++.++++..++.+|+.++..
T Consensus 8 ~~~~~~~illg~~iGg~~G~~~~~~~~~~-~~~~~~~~-~~~~~~~~i~~~~~~i~~~~~~~~~~~~~k~~~~~ 79 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGFFIGRIGNLL-DNISFSTF-FNIPWISFIALLIIIILFLLTFYFIYKSRKYKKLY 79 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666777777777665555111 11111111 12222333444445555566666666555544433
No 72
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=57.53 E-value=87 Score=24.16 Aligned_cols=50 Identities=24% Similarity=0.511 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHh-HHHHHHHHHHHHHHHH
Q 028694 142 LQNIASYMLLACGVVYVISGILCIGCIKRARQQ-KEMT-RDQAVKDLEDLERRRE 194 (205)
Q Consensus 142 ~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~-k~~~-reqa~kdLe~l~~rre 194 (205)
+.+..-|.+|..|+.| |......++....+ ++++ .|||.+|-|+-++.|.
T Consensus 11 LIkfGRysaL~lGvaY---Ga~r~~~l~~~~e~~Rei~a~eKav~da~~a~ekKr 62 (81)
T KOG4326|consen 11 LIKFGRYSALSLGVAY---GAFRLRQLREYHEDIREIDAHEKAVADAEEAAEKKR 62 (81)
T ss_pred HHHhhHHHHHHHHHHH---hHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4556678899999998 45555555432222 2333 6788888777655444
No 73
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.37 E-value=79 Score=27.50 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028694 181 QAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 181 qa~kdLe~l~~rreele~lL~ 201 (205)
+..++|++-++.++|.++++.
T Consensus 40 ~I~~~l~~Ae~~~~eA~~~~~ 60 (246)
T TIGR03321 40 KIAGELADADTKKREAEQERR 60 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554444443
No 74
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=56.53 E-value=26 Score=31.60 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 164 CIGCIKRARQQKEMT--RDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 164 C~g~lKr~rq~k~~~--reqa~kdLe~l~~rreele~lL~~~ 203 (205)
|.+.-.+.+...+++ +.++.++|++|+++..|||..+.+.
T Consensus 21 ~~A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~ 62 (236)
T PF12269_consen 21 CVAEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARA 62 (236)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 4456999999999999999998763
No 75
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=56.25 E-value=1e+02 Score=25.49 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 140 ILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.++-.++.+++|..-+-|++.+-+ .+.+..++.+=..+-+.|++..++.+..+++-|+.|.
T Consensus 20 t~~~~iInFliL~~lL~~~l~~pi-~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 80 (173)
T PRK13453 20 TVIVTVLTFIVLLALLKKFAWGPL-KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLK 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677766666666665543 3444544443355555666666666666666655554
No 76
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=54.84 E-value=1.1e+02 Score=25.12 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 142 LQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 142 ~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
+-.+.++.++..-+.|++.+-+ .+.+..++++=..+-+.|++..++.+..+++-|+.|
T Consensus 22 ~~~~i~Flil~~lL~~~l~kpi-~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L 79 (175)
T PRK14472 22 FWTAVTFVIVLLILKKIAWGPI-LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELL 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555544556655442 344444433335555555555455444444444444
No 77
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=54.39 E-value=95 Score=24.96 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
|.++...++|+++.-+=.+-+++.-. .++++..+++++-++-++|++.+..
T Consensus 12 ~qli~Flil~~~l~kfl~kPi~~~l~---~R~~~I~~~l~~A~~~~~ea~~~~~ 62 (141)
T PRK08476 12 ATFVVFLLLIVILNSWLYKPLLKFMD---NRNASIKNDLEKVKTNSSDVSEIEH 62 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666665555544443322 2233345555555555555554443
No 78
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=53.35 E-value=1.3e+02 Score=24.87 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028694 140 ILLQNIASYMLLACGVVYVI 159 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl 159 (205)
.+++ +..++++..-+.|++
T Consensus 25 ~~~~-~inflil~~lL~~fl 43 (167)
T PRK08475 25 IIER-TINFLIFVGILWYFA 43 (167)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 3344 666665555555543
No 79
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=52.30 E-value=14 Score=34.20 Aligned_cols=66 Identities=11% Similarity=0.248 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhh
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAE 203 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~ 203 (205)
.+...-.+...+++.+.+++++.|++=+-.=|....|+ ..+++...+|..| +..||.++.+.+...
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvK~E~Ke~EGdP~iK~rrR~~~re~~~~ 249 (343)
T PF01312_consen 177 LISVIASLLFRLLFAVLAALLVIAAIDFAYQRFEFEKKLKMSKQEVKDEHKESEGDPEIKSRRRQLQREMARR 249 (343)
T ss_dssp ----------------------------------------HHHHHH--HHHCCCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh
Confidence 34455556666777788888888887665544444333 4455555555544 556666676666543
No 80
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=52.01 E-value=19 Score=31.21 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028694 141 LLQNIASYMLLACGVVYVISGI 162 (205)
Q Consensus 141 l~~~IaS~~Ll~cG~vYvl~Gl 162 (205)
++....=|++++|=++|++..=
T Consensus 32 ~L~~yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 32 FLSSYGWYILFGCILLYLLWQK 53 (190)
T ss_dssp ----------------------
T ss_pred HHHHhCHHHHHHHHHHHHHHHH
Confidence 4444445677777777776654
No 81
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.88 E-value=22 Score=31.10 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 150 LLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 150 Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
||+==++|.++|-+=++-..|.+.+.....|+.+.+++||..+-++||..+.
T Consensus 72 lLgE~~iF~vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~ 123 (181)
T KOG3335|consen 72 LLGELFIFSVGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIA 123 (181)
T ss_pred HHhhHHheeecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667766666776777666666677778888888888888887554
No 82
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=51.84 E-value=1.4e+02 Score=24.87 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028694 183 VKDLEDLERRREELEQLLV 201 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL~ 201 (205)
++.+++-+..=+++++...
T Consensus 74 ~~~l~ea~~~i~~i~~~~~ 92 (199)
T PF10112_consen 74 REILEEAKEKIRRIEKAIK 92 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 83
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=51.08 E-value=91 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
++++++..+++++-++.|+|-+.++..+
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~ 84 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASY 84 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555777777777777777766554
No 84
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=50.99 E-value=72 Score=21.29 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 028694 147 SYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRR 193 (205)
Q Consensus 147 S~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rr 193 (205)
-|+..+-|+-.++++.+-+..+.++|+ ..|+|+.+++|+
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~~~~~~r~--------~~~~l~~~~~r~ 43 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVWSLRRRRR--------LRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhH
Confidence 466778888888888888877664443 344555554443
No 85
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=50.86 E-value=1.1e+02 Score=25.09 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028694 183 VKDLEDLERRREELEQLLV 201 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL~ 201 (205)
..+|.+-++.++|.+.++.
T Consensus 43 ~~~l~~A~~~~~ea~~~~~ 61 (161)
T COG0711 43 ADDLAEAERLKEEAQALLA 61 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 86
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=50.85 E-value=1.3e+02 Score=24.18 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 166 GCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 166 g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+.+..++++=...-+.|++..++.+..++|.++.|..
T Consensus 32 ~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~ 68 (159)
T PRK13461 32 AVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKN 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333333555666666666666666666666654
No 87
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=50.44 E-value=27 Score=30.46 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-HHHH
Q 028694 170 RARQQKEMTRDQAVKDLEDLERRREE-LEQL 199 (205)
Q Consensus 170 r~rq~k~~~reqa~kdLe~l~~rree-le~l 199 (205)
.++.+|+..+++|+|+|++.-++|++ +|+-
T Consensus 131 ~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~ 161 (225)
T PF01086_consen 131 EEEEKKEEIKEKAKKELDDFYENRNEKKEKN 161 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777899999999997666544 4443
No 88
>COG5393 Predicted membrane protein [Function unknown]
Probab=49.73 E-value=42 Score=27.98 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 028694 151 LACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELE 197 (205)
Q Consensus 151 l~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele 197 (205)
+..-++|++.-+-|+=.++.+|+.. --..-++||++-||-||
T Consensus 87 a~~~vl~vl~~i~ciW~lrks~~s~-----l~~aT~~ELanDRe~L~ 128 (131)
T COG5393 87 ATTAVLLVLALIGCIWTLRKSRKST-----LLRATRHELANDRELLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh-----HHHHHHHHHhhhHHhhc
Confidence 4556789999999998888777654 22344555666665554
No 89
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=49.58 E-value=1.5e+02 Score=24.47 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHHH-----HHHHHHHHHhhhccCccc-chhhHHHHHHHHHHHH
Q 028694 79 GIFRCYAVVIAFFVALAETEWQFVLK--FTKVLEYWVARG-----MLQIFVAVMTRAFPDYSA-KQKDLILLQNIASYML 150 (205)
Q Consensus 79 gIlRcY~I~~allvilaEtEW~~i~k--f~kvLe~Wi~RG-----~lqiFVgvmt~~~p~~~~-~~~~~~l~~~IaS~~L 150 (205)
.++..-++++++.-+.+.-..+.-.+ ++.=+++|+|=. .+|..+|..+.-+|..+. .|+...-|+...+...
T Consensus 45 ~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~ 124 (144)
T cd08766 45 LTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAI 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 46778888777777766655543333 345579999875 458889999999998654 3777788999888887
Q ss_pred HHHHHHHHHHHHH
Q 028694 151 LACGVVYVISGIL 163 (205)
Q Consensus 151 l~cG~vYvl~GlL 163 (205)
+..++.=.++|+.
T Consensus 125 ~~la~~t~~lGl~ 137 (144)
T cd08766 125 YYLAIATAETGLL 137 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666654
No 90
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=49.49 E-value=25 Score=30.94 Aligned_cols=23 Identities=39% Similarity=0.364 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 028694 181 QAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 181 qa~kdLe~l~~rreele~lL~~~ 203 (205)
++++++|.|++..|++++++..+
T Consensus 154 ~~~~~le~Lqkn~~~~~k~~d~~ 176 (192)
T COG5374 154 KAQILLEGLQKNQEELFKLLDKY 176 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999988654
No 91
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=49.21 E-value=37 Score=28.15 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 028694 142 LQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERR 192 (205)
Q Consensus 142 ~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~r 192 (205)
--.+.||..+++++++-++.++.-+.+|+.+..+-..+-.-.++||.+.++
T Consensus 77 ~~~~~~ya~~~ia~~~al~~l~~~~~Lk~~~~~~~~~~lp~l~~le~~~~~ 127 (214)
T PF01578_consen 77 PLALLGYAAFAIAALAALLYLIQERRLKKKKFSRFYQRLPSLETLERLSYR 127 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHH
Confidence 346678888888888888888888777765555544444445555555544
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.73 E-value=31 Score=36.67 Aligned_cols=11 Identities=64% Similarity=0.697 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 028694 187 EDLERRREELE 197 (205)
Q Consensus 187 e~l~~rreele 197 (205)
|+.|.+|+|||
T Consensus 396 e~rEaar~ElE 406 (1118)
T KOG1029|consen 396 ERREAAREELE 406 (1118)
T ss_pred HHHHHHHHHHH
Confidence 33333334443
No 93
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=48.63 E-value=54 Score=33.03 Aligned_cols=53 Identities=32% Similarity=0.371 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhHHHHH--HHHHHHHHHHHHHHHHHhhhc
Q 028694 137 KDLILLQNIASYMLLACGVVYVISGILCIGCIKRAR-QQKEMTRDQAV--KDLEDLERRREELEQLLVAER 204 (205)
Q Consensus 137 ~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~r-q~k~~~reqa~--kdLe~l~~rreele~lL~~~~ 204 (205)
...-++.+|.+.+=.+. -++| |.|+++.||++ +|+-+-..-||.||++|..+|
T Consensus 500 S~eTll~niq~llkva~---------------dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~Er 555 (641)
T KOG3915|consen 500 SIETLLTNIQGLLKVAI---------------DNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMER 555 (641)
T ss_pred hHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777776554332 3444 45678888874 454444555899999998775
No 94
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=47.84 E-value=60 Score=22.34 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 167 CIKRARQQKEMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 167 ~lKr~rq~k~~~reqa~kdLe~l~~rreele~l 199 (205)
.+.++++.=...-+.+..-+++|..|||.|+.-
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~ 41 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRV 41 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888899999999999999999763
No 95
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=46.28 E-value=41 Score=29.54 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccCCC-c-ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028694 45 RCYSVLTSLTALLCLAVNVLSAIRSFKNGS-D-IFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFV 122 (205)
Q Consensus 45 r~~s~VTvl~ALlciavnvis~v~sf~~~~-d-ifdgIlRcY~I~~allvilaEtEW~~i~kf~kvLe~Wi~RG~lqiFV 122 (205)
||..+.=...|++++++|++-.+- ++. + .++ ..+-+|...+..-+|-|++-++-
T Consensus 8 rclG~sLl~Lal~~iiaNilL~FP---~g~~~~~~~---------------------~~is~~vw~f~Gi~GgGlmvl~p 63 (195)
T PF05805_consen 8 RCLGFSLLPLALLCIIANILLFFP---NGEVTYLSE---------------------NHISCEVWYFGGIIGGGLMVLLP 63 (195)
T ss_pred hhhhhHHHHHHHHHHHHHHheecc---CCeeeeecc---------------------CCcchhheecCccccchHHHHHH
Confidence 677788888999999999994332 332 1 112 24555666667778999999999
Q ss_pred HHHhhhccCcc-----cc---hhhHHHHHHHHHHHHHHHHHHHHH
Q 028694 123 AVMTRAFPDYS-----AK---QKDLILLQNIASYMLLACGVVYVI 159 (205)
Q Consensus 123 gvmt~~~p~~~-----~~---~~~~~l~~~IaS~~Ll~cG~vYvl 159 (205)
|+|.+..-... ++ .|-..+|..|....+-..|+.|=+
T Consensus 64 a~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ 108 (195)
T PF05805_consen 64 AIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCF 108 (195)
T ss_pred HHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHH
Confidence 99987753320 01 345567777777777777787743
No 96
>PRK11677 hypothetical protein; Provisional
Probab=46.23 E-value=83 Score=25.96 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 160 SGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 160 ~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
.|.+-.+..++..+++..-.++.++--++|++.|.|++.
T Consensus 16 iG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~ 54 (134)
T PRK11677 16 IGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333334444456666666654
No 97
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=46.22 E-value=67 Score=24.55 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 176 EMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~l 199 (205)
...+...+.-|.+|++|+.|+|.+
T Consensus 14 k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 14 KEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444477888899999998875
No 98
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=45.53 E-value=1.3e+02 Score=22.72 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH---HhH---HHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 152 ACGVVYVISGILCIGCIKRARQQKE---MTR---DQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 152 ~cG~vYvl~GlLC~g~lKr~rq~k~---~~r---eqa~kdLe~l~~rreele~lL~~~ 203 (205)
.+.+++|.-=-+.++..++.+..+. .++ ++....-+.|+.|=+-||+.|.++
T Consensus 11 ivf~ifVap~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILdae 68 (75)
T PF06667_consen 11 IVFMIFVAPIWLILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455444455655443333221 122 222344455888999999999876
No 99
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=44.83 E-value=1.1e+02 Score=21.49 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 028694 110 EYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGC 167 (205)
Q Consensus 110 e~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~ 167 (205)
=.|+-=|+..+-+|+....+.+...+.+... ...-..+|+++++.|++++..
T Consensus 11 LaW~Rt~l~l~~~g~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 62 (73)
T PF02656_consen 11 LAWIRTALALVGVGLALLRFFSLDHPSSSAS------RRVSKVLGLLLIVLGLLTLIY 62 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3788889999999988877644322111000 334445555555555555543
No 100
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=44.71 E-value=3.5e+02 Score=27.45 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHH-HHHHHH
Q 028694 116 GMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVV-YVISGI 162 (205)
Q Consensus 116 G~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~v-Yvl~Gl 162 (205)
.++.+++-..|..|-|.+.......+|. .-+|+++||+. |+++.+
T Consensus 254 slYwai~TmtTVGYGDi~p~t~~E~i~~--i~~ml~g~~~~a~~ig~i 299 (823)
T PLN03192 254 AIYWSITTMTTVGYGDLHAVNTIEMIFI--IFYMLFNLGLTAYLIGNM 299 (823)
T ss_pred HHHHHHHHHhhccCCCcCCCccchHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4555666666677766555433333332 22345556655 444433
No 101
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=44.12 E-value=76 Score=24.72 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 028694 188 DLERRREELEQLLVAE 203 (205)
Q Consensus 188 ~l~~rreele~lL~~~ 203 (205)
|.++-|+||++-|.++
T Consensus 61 e~~~~~~El~rrLL~d 76 (117)
T TIGR03142 61 EAEAARAELQRRLLAD 76 (117)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 4567778888776654
No 102
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=43.43 E-value=38 Score=25.85 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 028694 140 ILLQNIASYMLLACGVVYVISGILCI 165 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl~GlLC~ 165 (205)
.++.+....+++|-|+||+++.+|=+
T Consensus 6 ~~l~~~~~lm~~GM~~VF~fL~lLi~ 31 (85)
T PRK03814 6 SLLVDAATLMLTGMGVVFIFLTLLVY 31 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999988744
No 103
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=43.35 E-value=1.4e+02 Score=25.32 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhh
Q 028694 169 KRARQQKEMTRDQAVKDLED-LERRREELEQLLVA 202 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~-l~~rreele~lL~~ 202 (205)
|..|+..+.+++|-++++++ -|..|+|+.+.+.+
T Consensus 57 ~se~~~~~~e~~re~~e~~~~pe~e~~el~~iy~~ 91 (213)
T PF01988_consen 57 KSERDLYEAEREREEWELENNPEEEKEELVEIYRA 91 (213)
T ss_pred HhhhhHHHHHhHHHHHHHHhChHhHHHHHHHHHHH
Confidence 44444444445554444444 55666777776654
No 104
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=42.19 E-value=1.5e+02 Score=23.32 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 153 CGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 153 cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
..++|+++.-+=.+-+++.- +.++++..+++++-++.+++.+.++..
T Consensus 5 Flil~~il~~~~~~pi~~~l---~~R~~~I~~~l~~A~~~~~ea~~~~~e 51 (147)
T TIGR01144 5 FILLVWFCMKYVWPPLAKAI---ETRQKKIADGLASAERAKKEAALAQKK 51 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333322 223334455555555555555555443
No 105
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=41.40 E-value=1.9e+02 Score=23.32 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 178 TRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 178 ~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+.++.+|.+|+|. -||+|+|+..
T Consensus 79 ~~~~lqkRle~l~--~eE~~~L~~e 101 (104)
T PF11460_consen 79 TNEELQKRLEELS--PEELEALQAE 101 (104)
T ss_pred hHHHHHHHHHhCC--HHHHHHHHHH
Confidence 3455566666665 3677777653
No 106
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.23 E-value=85 Score=31.42 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028694 179 RDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~ 198 (205)
-.+|.||||+|++-..+|+.
T Consensus 244 v~km~kdle~Lq~aEqsl~d 263 (575)
T KOG4403|consen 244 VNKMMKDLEGLQRAEQSLED 263 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44668888888776665554
No 107
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.42 E-value=68 Score=29.35 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+++.+...++|++||+.+++|++.+..
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788888888888888877654
No 108
>PRK11637 AmiB activator; Provisional
Probab=39.87 E-value=1.4e+02 Score=27.82 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=10.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 176 EMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~l 199 (205)
+.+.++.++++.+++++..++++.
T Consensus 53 ~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 53 QQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 109
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=39.83 E-value=42 Score=27.81 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028694 138 DLILLQNIASYMLLACGVVYVIS 160 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~ 160 (205)
+-.+.--|++.+++.||++|+++
T Consensus 118 ~~~i~~~i~g~ll~i~~giy~~~ 140 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIYVVL 140 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667788888888888875
No 110
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.79 E-value=1.8e+02 Score=22.64 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=25.0
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 160 SGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 160 ~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
.|+.-...+++.....+.+-++.+++-++|+++-+.|+.
T Consensus 24 ~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 24 NGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 466666666666665566656666666777776666643
No 111
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=39.72 E-value=2.3e+02 Score=23.91 Aligned_cols=52 Identities=8% Similarity=-0.066 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 152 ACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 152 ~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
-+-.+-++.-++.--.+++-..-=+.++++...|+++-++.|+|.+.+...+
T Consensus 16 ~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~y 67 (155)
T PRK06569 16 LIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYY 67 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444554444445555555666666666666666665554
No 112
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=38.76 E-value=2.2e+02 Score=23.44 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 146 ASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 146 aS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.-|.++..-++++++..+=.+-+++.-. +++++...++++-++.++|.+.++.
T Consensus 25 ~~~~~inflil~~lL~~fl~kPi~~~l~---~R~~~I~~~l~~Ae~~~~ea~~~~~ 77 (167)
T PRK08475 25 IIERTINFLIFVGILWYFAAKPLKNFYK---SRINKISKRLEEIQEKLKESKEKKE 77 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666667777766665444443322 2333345555555555555554443
No 113
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=38.69 E-value=48 Score=26.53 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 028694 151 LACGVVYVIS 160 (205)
Q Consensus 151 l~cG~vYvl~ 160 (205)
+..+++|+++
T Consensus 12 ~i~~i~yF~~ 21 (109)
T PRK05886 12 LIMGGFMYFA 21 (109)
T ss_pred HHHHHHHHHH
Confidence 3456667665
No 114
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.31 E-value=1.2e+02 Score=21.00 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~l 199 (205)
+++|++|...-++.+...++|+...++|...
T Consensus 18 r~~R~RKk~~~~~Le~~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 18 RRSRQRKKQYIEELEEKVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777666666666666676666666543
No 115
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.21 E-value=1.5e+02 Score=21.16 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=12.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 028694 173 QQKEMTRDQAVKDLEDLERRREEL 196 (205)
Q Consensus 173 q~k~~~reqa~kdLe~l~~rreel 196 (205)
++.+.+.++.+.|.++|..+...|
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666555544
No 116
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=38.11 E-value=2e+02 Score=22.64 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028694 179 RDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~ 201 (205)
.++.+++++.|..++..||+...
T Consensus 59 i~~~~~e~~~L~~~~~~l~~ei~ 81 (117)
T COG2919 59 IAAQQAELEKLSARNTALEAEIK 81 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999998654
No 117
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=37.80 E-value=51 Score=25.67 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=12.4
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 028694 158 VISGILCIGCIKRARQQKEM 177 (205)
Q Consensus 158 vl~GlLC~g~lKr~rq~k~~ 177 (205)
++++.+|+-..+|+|+.-..
T Consensus 32 ill~c~c~~~~~r~r~~~~~ 51 (102)
T PF11669_consen 32 ILLSCCCACRHRRRRRRLQQ 51 (102)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44677777776766554433
No 118
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=37.60 E-value=2.3e+02 Score=23.29 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHH-----HHHHHHHHhhhccCcccchhhHH-HHHHHHHHHH
Q 028694 79 GIFRCYAVVIAFFVALAETEWQFV--LKFTKVLEYWVARGM-----LQIFVAVMTRAFPDYSAKQKDLI-LLQNIASYML 150 (205)
Q Consensus 79 gIlRcY~I~~allvilaEtEW~~i--~kf~kvLe~Wi~RG~-----lqiFVgvmt~~~p~~~~~~~~~~-l~~~IaS~~L 150 (205)
.++...+++.++.-+.|+-+.+.- ..++.=+++|+|=.. +|..+|+.+.-+|..+.+-+... .|+...+...
T Consensus 45 ~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~ 124 (143)
T cd08763 45 GLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRAL 124 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHH
Confidence 467888888877777776655432 236777999998764 58888998888998665534444 4888877776
Q ss_pred HHHHHHHHHHHH
Q 028694 151 LACGVVYVISGI 162 (205)
Q Consensus 151 l~cG~vYvl~Gl 162 (205)
+..++.=.++|+
T Consensus 125 f~la~~t~~lG~ 136 (143)
T cd08763 125 FLSSVGTSLLGL 136 (143)
T ss_pred HHHHHHHHHHHH
Confidence 666655555554
No 119
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=37.49 E-value=1e+02 Score=26.71 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 171 ARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 171 ~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
..++|+...+++.+..++++++.++|+.-+.+.
T Consensus 140 G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 140 GLKIRQELIEEAKKKREELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556677777788888888888777654
No 120
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=37.07 E-value=79 Score=25.28 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK 175 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k 175 (205)
...++..|-=|++.+..++|..+|++.+-.+|+.|.-+
T Consensus 4 f~emW~~iflW~l~ss~~vh~~A~liA~~~lRkhk~~~ 41 (105)
T PF10190_consen 4 FSEMWYWIFLWALFSSIFVHLIAGLIAFFTLRKHKFGR 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 34678889999999999999999999999887766544
No 121
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=36.72 E-value=1.3e+02 Score=29.15 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCcccchHHHHHHHHHHHHHHHH---hhh--------------hHHHHHHHHHHHHHHHHHHH
Q 028694 73 GSDIFDGIFRCYAVVIAFFVALA---ETE--------------WQFVLKFTKVLEYWVARGML 118 (205)
Q Consensus 73 ~~difdgIlRcY~I~~allvila---EtE--------------W~~i~kf~kvLe~Wi~RG~l 118 (205)
.+++|..+.+.+...+++|..+. +-. -..+..+++++.+|.++.++
T Consensus 73 ~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FY 135 (472)
T TIGR00769 73 KEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFY 135 (472)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHH
Confidence 35789999999999999888771 111 11355678899999999765
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=36.35 E-value=1.3e+02 Score=20.90 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
+++|++|...-+..+...+.|+..-++|...+
T Consensus 18 ~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 18 RRSRERKKAEIEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555666666555443
No 123
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=36.01 E-value=1.3e+02 Score=23.50 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=25.7
Q ss_pred HHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028694 165 IGCIKRARQQK-EMTRDQAVKDLEDLERRREELEQLLVAER 204 (205)
Q Consensus 165 ~g~lKr~rq~k-~~~reqa~kdLe~l~~rreele~lL~~~~ 204 (205)
+..+|.++..+ +..-.+.+.+.+.+.+.-++|...|..+|
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567677666 44455567777777777777777666553
No 124
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=35.98 E-value=2.7e+02 Score=23.59 Aligned_cols=12 Identities=17% Similarity=0.714 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 028694 149 MLLACGVVYVIS 160 (205)
Q Consensus 149 ~Ll~cG~vYvl~ 160 (205)
+.+|.|+-|++.
T Consensus 10 ~~vG~~~G~~~~ 21 (201)
T PF12072_consen 10 LIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 125
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=35.48 E-value=1e+02 Score=24.29 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAERV 205 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~~~ 205 (205)
||+..|=-+.+-+=+.|.+-+++.+.+.|...|.++++
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444566666799999999999999999988753
No 126
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=35.39 E-value=2.7e+02 Score=23.38 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHH-----HHHHHHHHHhhhccCccc-chhhHHHHHHHHHHHH
Q 028694 79 GIFRCYAVVIAFFVALAETEWQFV--LKFTKVLEYWVARG-----MLQIFVAVMTRAFPDYSA-KQKDLILLQNIASYML 150 (205)
Q Consensus 79 gIlRcY~I~~allvilaEtEW~~i--~kf~kvLe~Wi~RG-----~lqiFVgvmt~~~p~~~~-~~~~~~l~~~IaS~~L 150 (205)
.++...+++.++.-+.|.-+.+.- ..++.=+++|+|=. .+|..+|..+.-+|..+. .++...-|+.-..+..
T Consensus 52 ~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i 131 (153)
T cd08765 52 AGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFI 131 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 457777777777766666555322 23667789999875 468889999999998654 5888889999888887
Q ss_pred HHHHHHHHHHHHH
Q 028694 151 LACGVVYVISGIL 163 (205)
Q Consensus 151 l~cG~vYvl~GlL 163 (205)
+.-++.=.++|++
T Consensus 132 ~~Lai~t~~lG~~ 144 (153)
T cd08765 132 FGTVIATALMGIT 144 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776777764
No 127
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=35.17 E-value=1.3e+02 Score=25.25 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 165 IGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 165 ~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+-++|++..+=+..++++...|.+|.++.+++++.+-.
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~ 133 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567666666778999999999999999999988754
No 128
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=34.95 E-value=1e+02 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 166 GCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 166 g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
..++.++.++..+-+...++..++..|+.||..+|.
T Consensus 218 ~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 218 SSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344567777777777788999999999999988774
No 129
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=34.49 E-value=2.6e+02 Score=22.96 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHH---HHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Q 028694 148 YMLLACGVVYVISGILCIGCI---KRARQQK-EMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~l---Kr~rq~k-~~~reqa~kdLe~l~~rreele~ 198 (205)
|.++..+++|+++.-.-.+-+ -+.|+++ +..-.+|++..++.+.-.++.|+
T Consensus 11 ~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~ 65 (161)
T COG0711 11 WQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQ 65 (161)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333322 3344444 44444454444444333333333
No 130
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.28 E-value=1.8e+02 Score=23.27 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=13.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028694 158 VISGILCIGCIKRARQQKEMTRDQAVKDLEDLE 190 (205)
Q Consensus 158 vl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~ 190 (205)
++.|+..=-.+.|....+.....+.+++|++..
T Consensus 6 lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k 38 (128)
T PF06295_consen 6 LVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAK 38 (128)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 344443333334444433333333344444333
No 131
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=34.09 E-value=66 Score=24.47 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hHHHH
Q 028694 140 ILLQNIASYMLLACGVVYVISGIL--CIGCI 168 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl~GlL--C~g~l 168 (205)
.++.+-...|++|-|.||+++.+| |++..
T Consensus 5 ~ll~~gl~lMvlGMg~VfvFL~lLI~~i~~m 35 (82)
T PRK02919 5 ELLGEGFTLMFLGMGFVLAFLFLLIFAIRGM 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999999876 44443
No 132
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=34.01 E-value=81 Score=25.72 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 028694 136 QKDLILLQNIASYMLLACGVVYVISGILCIGCIKR 170 (205)
Q Consensus 136 ~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr 170 (205)
.+++..+.++.++.++.+|.++++.|.+-+=++.+
T Consensus 4 ~~~~~~~~~il~~~lll~G~~f~l~gaiGllR~PD 38 (120)
T PRK12671 4 AADIPLWAAILVAFFLVLGAGLTLIGTIGLVRLKS 38 (120)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34667778888888888888888888766644443
No 133
>PF14142 YrzO: YrzO-like protein
Probab=33.52 E-value=1.3e+02 Score=20.99 Aligned_cols=10 Identities=20% Similarity=0.763 Sum_probs=6.3
Q ss_pred HHHHHHHHhH
Q 028694 156 VYVISGILCI 165 (205)
Q Consensus 156 vYvl~GlLC~ 165 (205)
+|+-.|+.|-
T Consensus 7 ff~a~gvace 16 (46)
T PF14142_consen 7 FFFAAGVACE 16 (46)
T ss_pred HHHHHHHHHH
Confidence 4555677774
No 134
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=33.44 E-value=77 Score=22.48 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028694 167 CIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAER 204 (205)
Q Consensus 167 ~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~~ 204 (205)
.+|..|+....++.-|.+.+.+|+..-+.|.+.|...+
T Consensus 12 klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 12 KLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777788999999999999888888776543
No 135
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=33.15 E-value=2.1e+02 Score=21.52 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 141 LLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 141 l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
++-.++.++++..-+-|++.+=+ .+.+..++.+=...-+.|++-.++.+...++.+..|
T Consensus 2 l~~~~i~Flil~~~l~~~~~~pi-~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l 60 (132)
T PF00430_consen 2 LFWQLINFLILFFLLNKFLYKPI-KKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKL 60 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH-HHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556667666666666665543 344443333334444444444444444444444444
No 136
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.00 E-value=2.6e+02 Score=25.58 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 177 MTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 177 ~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
++-.+.+|+.++|..+++++|..+..+
T Consensus 57 ~e~~s~Q~~~~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 57 KELRSLQKKVNTLAAEVEDLENKLDSV 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777776654
No 137
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=32.69 E-value=3.2e+02 Score=23.43 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 140 ILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.+.-++.+++.+...+.|++-+- =.+.+.+++.+=+++-++|++..++.+...+|-|+.|.
T Consensus 50 ~~i~qlInFlIlv~lL~k~l~kP-i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~ 110 (205)
T PRK06231 50 VFIAHLIAFSILLLLGIFLFWKP-TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHE 110 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666655555555543 23444433333355545555555555555444444443
No 138
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=32.61 E-value=2e+02 Score=21.16 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 028694 181 QAVKDLEDLE 190 (205)
Q Consensus 181 qa~kdLe~l~ 190 (205)
+++++.++++
T Consensus 46 ~l~~~~~~l~ 55 (97)
T PF04999_consen 46 QLEKEIDQLQ 55 (97)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 139
>PRK11677 hypothetical protein; Provisional
Probab=32.52 E-value=2.1e+02 Score=23.65 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 179 RDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~~ 202 (205)
..+.+++||+.+.+-++-.+.+..
T Consensus 31 q~~le~eLe~~k~ele~YkqeV~~ 54 (134)
T PRK11677 31 QQALQYELEKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555554554444
No 140
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=32.33 E-value=1.9e+02 Score=20.75 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHH
Q 028694 158 VISGILCIGCIKRARQQKEMTRDQAVKDL----EDLERRRE 194 (205)
Q Consensus 158 vl~GlLC~g~lKr~rq~k~~~reqa~kdL----e~l~~rre 194 (205)
+++|..-+ |-++..++.+.+.-+||= |.+++.|+
T Consensus 13 ~~S~ym~v---~t~~eE~~~dq~~IEkEGevymeR~e~ere 50 (52)
T PF14147_consen 13 IFSGYMAV---KTAKEEREIDQEFIEKEGEVYMERMEEERE 50 (52)
T ss_pred HHHHHHHH---HHHHHHHHhHHHHHHHhHHHHHHHHHHHhc
Confidence 44555555 445556666666666663 44554443
No 141
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.26 E-value=96 Score=27.96 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=20.4
Q ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHH
Q 028694 175 KEMTRDQA-VKDLEDLERRREELEQLL 200 (205)
Q Consensus 175 k~~~reqa-~kdLe~l~~rreele~lL 200 (205)
.+.+-||- ..-||+||.|||.||+-.
T Consensus 143 ia~ETEqIG~~IL~dL~~QRe~L~rar 169 (220)
T KOG1666|consen 143 IALETEQIGSEILEDLHGQREQLERAR 169 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666 788999999999999754
No 142
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=31.92 E-value=80 Score=29.53 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 174 QKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 174 ~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
++.+.+++.++.++++++|.+|+++++..+
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~ 299 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEAEELIAEY 299 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667778888999999999999987765
No 143
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=31.79 E-value=58 Score=27.40 Aligned_cols=27 Identities=33% Similarity=0.751 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHH
Q 028694 146 ASYMLLACGVVYVISGI-LCIGCIKRAR 172 (205)
Q Consensus 146 aS~~Ll~cG~vYvl~Gl-LC~g~lKr~r 172 (205)
..|.++++|.+-++.|. -|+|.+|++|
T Consensus 52 ~~~ili~~G~v~~~v~flGc~Ga~~es~ 79 (237)
T KOG3882|consen 52 PAYILIAVGGVVFLVGFLGCCGALRESR 79 (237)
T ss_pred chhhhhhhhHHHHHHHHhhhhhhHhhhH
Confidence 44555555544444443 3566655554
No 144
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=31.57 E-value=53 Score=32.49 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhhhheec
Q 028694 50 LTSLTALLCLAVNVLSAIRSF 70 (205)
Q Consensus 50 VTvl~ALlciavnvis~v~sf 70 (205)
..+++|=|--+-++-|.+++-
T Consensus 264 ~~AlFaqlNqGe~iTsgLkkV 284 (480)
T KOG2675|consen 264 RGALFAQLNQGEGITSGLKKV 284 (480)
T ss_pred HHHHHHHHhccchhhhhhhhC
Confidence 345666666666666666543
No 145
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=31.42 E-value=1e+02 Score=27.66 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 028694 183 VKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL~~~ 203 (205)
+||.+.|+++.++|++.|..-
T Consensus 228 eken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 228 EKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888888777654
No 146
>PF15345 TMEM51: Transmembrane protein 51
Probab=31.02 E-value=24 Score=31.87 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 028694 145 IASYMLLACGVVYVISGILCIGC 167 (205)
Q Consensus 145 IaS~~Ll~cG~vYvl~GlLC~g~ 167 (205)
.++|.|.++|++.+++.| |++.
T Consensus 59 SVAyVLVG~Gv~LLLLSI-CL~I 80 (233)
T PF15345_consen 59 SVAYVLVGSGVALLLLSI-CLSI 80 (233)
T ss_pred EEEEehhhHHHHHHHHHH-HHHH
Confidence 356899999999888876 4544
No 147
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=30.77 E-value=1.2e+02 Score=24.01 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=18.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 176 EMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~l 199 (205)
+.+++..+++++++++|.++|+.+
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666689999999999998754
No 148
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=30.76 E-value=75 Score=25.01 Aligned_cols=12 Identities=8% Similarity=0.442 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 028694 149 MLLACGVVYVIS 160 (205)
Q Consensus 149 ~Ll~cG~vYvl~ 160 (205)
+.+..+++|+++
T Consensus 24 lvii~~i~yf~~ 35 (106)
T PRK05585 24 LVVFFAIFYFLI 35 (106)
T ss_pred HHHHHHHHHHHh
Confidence 344455566554
No 149
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=30.38 E-value=2.5e+02 Score=21.43 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhccCccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 028694 118 LQIFVAVMTRAFPDYSA-KQKDLILLQNIASYMLLACGVVYVISGILCIGCI 168 (205)
Q Consensus 118 lqiFVgvmt~~~p~~~~-~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~l 168 (205)
+|...|.+..-.|+.+. .++....++.+.++.....|.+=+..|+..-..+
T Consensus 85 ~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~~~f 136 (137)
T PF03188_consen 85 LQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEKAWF 136 (137)
T ss_pred HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777666566544 3555556699999999999999999998765443
No 150
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.18 E-value=4.4e+02 Score=24.28 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHH
Q 028694 82 RCYAVVIAFFVALAETEWQFVLKFTKVLEYWVAR---GMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVV 156 (205)
Q Consensus 82 RcY~I~~allvilaEtEW~~i~kf~kvLe~Wi~R---G~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~v 156 (205)
+-+...+.++..++=+-|.++.++.+.+=.+++| +--.+=..=+-++||+.+-+....++-++..|+........
T Consensus 16 ~~~~l~~~~l~l~~~lP~~~~~~l~~~lg~l~~~~~~~~~~~a~~NL~~~FPe~se~ere~i~~~~~~~~~r~~~E~~ 93 (308)
T COG1560 16 WLTWLGVGALWLLVLLPYPFLRRLGDGLGRLAGRLLKRRRKIARRNLALCFPEKSEAEREKIVKESFASMGRALLETG 93 (308)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666688899999999999999888 33444445566789988777777788888888766554443
No 151
>PF11031 Phage_holin_T: Bacteriophage T holin; InterPro: IPR020982 One mechanism by which bacteriophages effect host lysis begins with the accumulation of a holin in the host membrane and an endolysin in the host cytoplasm during late gene expression. At an allele-specific time, the holin disrupts the membrane, thus allowing the endolysin to enter the periplasm and degrade the cell wall peptidoglycan. This entry represents a specific holin, known as T, which has an unusual C-terminal periplasmic domain thought to be involved in the transduction of environmental information for the real-time control of lysis timing [].
Probab=30.05 E-value=2.5e+02 Score=25.34 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 028694 116 GMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDL 186 (205)
Q Consensus 116 G~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdL 186 (205)
|-.-++.|++.+-+-| +...-+|+..++..+++..-++-.--|=--+...|+++..-..+--|++||-
T Consensus 7 ~~~~~l~~lLdrlfkd---~~tgk~L~~Rv~~iivlfim~l~wyk~~~l~~~yK~~~~~~y~e~vq~erd~ 74 (216)
T PF11031_consen 7 GKSDILFGLLDRLFKD---NKTGKVLFSRVIVIIVLFIMALIWYKGDELFDFYKESSYETYTEIVQKERDA 74 (216)
T ss_pred chHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHHhheeeccHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4566788888888877 3345577888888777766555555555567778888887776666666653
No 152
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=29.88 E-value=17 Score=28.67 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
.+.+.+-+.+.+++++++..+..+.++++++.
T Consensus 40 ~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~ 71 (160)
T PF04612_consen 40 LERRDQLQQQLQQLQQQLAWLQQQAQQIQALQ 71 (160)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666677777888888888888877665
No 153
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=29.73 E-value=1.1e+02 Score=24.04 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 175 KEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 175 k~~~reqa~kdLe~l~~rreele~ 198 (205)
-+..+++-++|=-+|+.||.-||.
T Consensus 60 EqRakehqErDEkElEERrKALe~ 83 (86)
T PF15437_consen 60 EQRAKEHQERDEKELEERRKALEM 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334456667777788888887764
No 154
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=29.64 E-value=90 Score=23.42 Aligned_cols=23 Identities=30% Similarity=0.545 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028694 141 LLQNIASYMLLACGVVYVISGIL 163 (205)
Q Consensus 141 l~~~IaS~~Ll~cG~vYvl~GlL 163 (205)
++.+....+++|.|+||+++.+|
T Consensus 3 ll~~~~~l~v~GM~~VF~fL~lL 25 (82)
T TIGR01195 3 LLLEGATLTVLGMGIVFLFLSLL 25 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888999999999998765
No 155
>COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]
Probab=29.61 E-value=78 Score=28.53 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 028694 136 QKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREE 195 (205)
Q Consensus 136 ~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rree 195 (205)
-+...-.+..+.|.|++|+..|++.++.- |-+||..+--.+...+.-+|.-+--+.|++
T Consensus 71 La~~~~vHf~~~wlL~a~~L~y~~~~l~t-Gh~Rr~f~p~~~~~~~~~rd~v~~l~~~~~ 129 (221)
T COG4117 71 LAGGRAVHFAAMWLLLANLLGYLLINLVT-GHYRRRFSPLLDRAARQTRDYVFALMKREE 129 (221)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhhcc-ceeEEeccchhhhhhhhhHHHHHHHHhhhc
Confidence 33456789999999999999999987653 455666555555555666666655455544
No 156
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.31 E-value=1.9e+02 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 028694 137 KDLILLQNIASYMLLACGVVYVI 159 (205)
Q Consensus 137 ~~~~l~~~IaS~~Ll~cG~vYvl 159 (205)
..+.|+=-+.+.+|+|.|++|.+
T Consensus 17 galgLvGGp~Gl~ml~AgA~Y~~ 39 (301)
T PF06120_consen 17 GALGLVGGPPGLVMLGAGAWYYF 39 (301)
T ss_pred hHHHhhcchHHHHHHHHHHHHHH
Confidence 35567777788889999999876
No 157
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=29.01 E-value=69 Score=24.11 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=6.4
Q ss_pred HHHHHHhHHHHHHHH
Q 028694 172 RQQKEMTRDQAVKDL 186 (205)
Q Consensus 172 rq~k~~~reqa~kdL 186 (205)
.+||+++++++..+|
T Consensus 24 qkK~~k~~~~m~~~L 38 (84)
T TIGR00739 24 QRKRRKAHKKLIESL 38 (84)
T ss_pred HHHHHHHHHHHHHhC
Confidence 333344444444443
No 158
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=29.01 E-value=96 Score=23.40 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
+...++.++++++|++.++.|+.+|.
T Consensus 77 ~~~~~~l~~~i~~l~~~~~~l~~~l~ 102 (102)
T cd04775 77 EERLQSLNREIQRLRQQQQVLAAILG 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455667788888888888888763
No 159
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.85 E-value=68 Score=30.21 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 028694 184 KDLEDLERRREELEQ 198 (205)
Q Consensus 184 kdLe~l~~rreele~ 198 (205)
+.=+||+||.+|+.+
T Consensus 78 Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 78 RKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHhHHHHHHhh
Confidence 334556666666665
No 160
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=28.79 E-value=3.1e+02 Score=22.01 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 141 LLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 141 l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
++-.+.++++|..-+-.++.+=. .+.+..++++=+..-+.|.+.-++.+..++|-|+.|..-
T Consensus 10 ~~~qli~Flil~~~l~kfl~kPi-~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A 71 (141)
T PRK08476 10 MLATFVVFLLLIVILNSWLYKPL-LKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNA 71 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655 666675555557777777777777777777777766543
No 161
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.68 E-value=1.2e+02 Score=27.31 Aligned_cols=35 Identities=17% Similarity=0.456 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+|++|.+.+..-.++..-..+|++..+.|.....+
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777666677777777777777776665543
No 162
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=28.66 E-value=3.1e+02 Score=22.00 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+..++.+=...-+.|++..++.+..+++-|..|..
T Consensus 31 l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~ 65 (159)
T PRK09173 31 LDARADRIKNELAEARRLREEAQQLLAEYQRKRKE 65 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333555666666666666666666665543
No 163
>PRK12704 phosphodiesterase; Provisional
Probab=28.58 E-value=4.7e+02 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 028694 187 EDLERRREELEQL 199 (205)
Q Consensus 187 e~l~~rreele~l 199 (205)
++++++|+|+|+.
T Consensus 64 eE~~~~R~Ele~e 76 (520)
T PRK12704 64 EEIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 164
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=28.57 E-value=1.9e+02 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=27.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 028694 135 KQKDLILLQNIASYMLLACGVVYVISGILCIGC 167 (205)
Q Consensus 135 ~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~ 167 (205)
......++.-+.-..+++-.++|+..|.++...
T Consensus 35 ~~~im~ifmllG~L~~l~S~~VYfwIGmlStka 67 (114)
T PF11023_consen 35 SPIIMVIFMLLGLLAILASTAVYFWIGMLSTKA 67 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 455677888888888899999999999998744
No 165
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.33 E-value=2.4e+02 Score=20.58 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 028694 180 DQAVKDLED 188 (205)
Q Consensus 180 eqa~kdLe~ 188 (205)
++.+++++.
T Consensus 36 ~~l~~~~~~ 44 (90)
T PF06103_consen 36 DTLQEQVDP 44 (90)
T ss_pred HHHHHhHHH
Confidence 333444433
No 166
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=28.30 E-value=3.3e+02 Score=22.28 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
..+-+.|++..++.+..++|-|+.|.
T Consensus 53 ~~~l~~Ae~~~~eA~~~~~e~e~~l~ 78 (173)
T PRK13460 53 QNDINKASELRLEAEALLKDYEARLN 78 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555543
No 167
>PF10270 MMgT: Membrane magnesium transporter; InterPro: IPR018937 This entry represents a novel family of membrane magnesium transporters (MMgT) []. The proteins, MMgT1 and MMgT2, are localised to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg2+ transport in the Golgi and post-Golgi organelles of epithelium-derived cells [].
Probab=28.22 E-value=33 Score=26.70 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH-----HHHHHH
Q 028694 140 ILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAV-----KDLEDL 189 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~-----kdLe~l 189 (205)
++++.++|.+++..|++....-+-=+.. .++.++++++++. ++++++
T Consensus 38 I~~E~lv~l~l~~~G~v~~~~~l~~I~~---~~~~~~i~~~~~~~~~g~~~~~~~ 89 (106)
T PF10270_consen 38 IVLETLVSLILFVFGIVLSAGKLKPISW---SEYASEIEMNKATNEIGNNPFDEL 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCccccH---HHhHHHHhhccccccccCCCHHHh
Confidence 7899999999988887766544333322 3446677766665 556654
No 168
>PF14981 FAM165: FAM165 family
Probab=27.94 E-value=2.3e+02 Score=20.22 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=7.0
Q ss_pred HHHHH---HHHhHHH
Q 028694 156 VYVIS---GILCIGC 167 (205)
Q Consensus 156 vYvl~---GlLC~g~ 167 (205)
+|++. =|||+++
T Consensus 10 lYILaaKtlilClaF 24 (51)
T PF14981_consen 10 LYILAAKTLILCLAF 24 (51)
T ss_pred HHHHHHHHHHHHHHH
Confidence 45554 2677765
No 169
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=27.91 E-value=1.1e+02 Score=30.33 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 028694 181 QAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 181 qa~kdLe~l~~rreele~lL~ 201 (205)
+.++++++||.+.++||..|.
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456777778888888888774
No 170
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=27.81 E-value=1.6e+02 Score=24.35 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 173 QQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 173 q~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+...+..++-+||++.....|..||.+|..
T Consensus 8 ee~~~kyq~LQk~l~k~~~~rqkle~qL~E 37 (120)
T KOG3478|consen 8 EEEANKYQNLQKELEKYVESRQKLETQLQE 37 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566788899999999999999998864
No 171
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=27.60 E-value=51 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQ 174 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~ 174 (205)
|.|+.+|++.++.|+.++...-...++
T Consensus 2 ~~~~~~~~i~l~~g~~~~~~~~~~~~~ 28 (148)
T PF12158_consen 2 VFLLLFGIIFLLIGLVLLIGGIFLYWR 28 (148)
T ss_pred eEhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776665544444433
No 172
>PF15325 MRI: Modulator of retrovirus infection
Probab=27.37 E-value=92 Score=25.18 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=18.2
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCC---CCCCC-CCCCcchhhHHHH
Q 028694 5 GERVGEISQPPPQPQPPPPPARASS---GGRLR-NRADPLLVVCRCY 47 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~d~~L~~cr~~ 47 (205)
.+.++++..|+|+..|++..+.+.+ +.|.. -..|.|=++.-+|
T Consensus 58 e~Ed~g~d~~~pglsps~~p~~s~s~cs~speeeEdeD~lKYVREIF 104 (106)
T PF15325_consen 58 EEEDSGNDAPAPGLSPSQGPGGSDSACSRSPEEEEDEDALKYVREIF 104 (106)
T ss_pred ccccccccCCCCCCCCCCCCCCCCcccCCCcccchhhHHHHHHHHHh
Confidence 3344445555554444443332211 11211 2346666665554
No 173
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=26.74 E-value=1e+02 Score=31.84 Aligned_cols=31 Identities=39% Similarity=0.660 Sum_probs=25.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028694 174 QKEMTRDQAVKDLEDLERRREELEQLLVAER 204 (205)
Q Consensus 174 ~k~~~reqa~kdLe~l~~rreele~lL~~~~ 204 (205)
+.+.++||...++|+.+.+|+|.-..+.++|
T Consensus 421 ~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r 451 (683)
T KOG1145|consen 421 KDESEQEKISRDLEDIEEQREEAAEALLAKR 451 (683)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence 4456688999999999999999877776654
No 174
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=26.36 E-value=35 Score=33.82 Aligned_cols=80 Identities=24% Similarity=0.300 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhheeccCC------CcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHHH
Q 028694 46 CYSVLTSLTALLCLAVNVLSAIRSFKNG------SDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTK----VLEYWVAR 115 (205)
Q Consensus 46 ~~s~VTvl~ALlciavnvis~v~sf~~~------~difdgIlRcY~I~~allvilaEtEW~~i~kf~k----vLe~Wi~R 115 (205)
++.+||.+.+|.+++-|++.++ |||.. +|+|-==|=|=-++|+.+..=.=|- -.+|.+|+ +++.|++=
T Consensus 32 ~i~~v~~~lsLVTv~GNlLVmi-SfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~-Y~lmg~W~LG~~~CdlWLal 109 (503)
T KOG4220|consen 32 FIVVVTGSLSLVTVVGNLLVMI-SFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTT-YTLMGYWPLGPLVCDLWLAL 109 (503)
T ss_pred eeehhhhHHHHHhhhccEEEEE-EEEecceeeeecceeehHHHHhhhhhheeechHHHH-HHHHcccccchHHHHHHHHH
Confidence 3567899999999999999977 99887 3555222223222333222211111 24566664 57888877
Q ss_pred HHHHHHHHHHhh
Q 028694 116 GMLQIFVAVMTR 127 (205)
Q Consensus 116 G~lqiFVgvmt~ 127 (205)
--+-+=..||-+
T Consensus 110 DYvaSNASVmNL 121 (503)
T KOG4220|consen 110 DYVASNASVMNL 121 (503)
T ss_pred HHHhhhhhhhhh
Confidence 766666667763
No 175
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=26.19 E-value=2.3e+02 Score=21.77 Aligned_cols=57 Identities=12% Similarity=0.259 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHhhhccCccc-chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028694 105 FTKVLEYWVARG-----MLQIFVAVMTRAFPDYSA-KQKDLILLQNIASYMLLACGVVYVISG 161 (205)
Q Consensus 105 f~kvLe~Wi~RG-----~lqiFVgvmt~~~p~~~~-~~~~~~l~~~IaS~~Ll~cG~vYvl~G 161 (205)
.+.=.+.|+|-- .+|.+.|....-+|+... .++....++...+......++.-+.+|
T Consensus 68 h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G 130 (131)
T cd08554 68 NLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLG 130 (131)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344557777653 467778887777777555 478888999999999999888888776
No 176
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.16 E-value=3e+02 Score=20.99 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 028694 181 QAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 181 qa~kdLe~l~~rreele~lL~~~ 203 (205)
+...+-+.|+.|=+-||+.|.++
T Consensus 46 ~L~~~A~rm~~RI~tLE~ILDae 68 (75)
T PRK09458 46 QLTEKAERMRERIQALEAILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 33456667888999999999876
No 177
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.15 E-value=4.4e+02 Score=25.93 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 028694 187 EDLERRREELEQLL 200 (205)
Q Consensus 187 e~l~~rreele~lL 200 (205)
++++++|+|+|+.+
T Consensus 58 eE~~~~R~Ele~el 71 (514)
T TIGR03319 58 EEVHKLRAELEREL 71 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666665543
No 178
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=26.11 E-value=1.6e+02 Score=30.10 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 167 CIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 167 ~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
.+|..-++-+++-+|+.|-+||=.+-|..||++|-+.
T Consensus 620 alkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~ 656 (661)
T KOG2070|consen 620 ALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKM 656 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777778888899999999999999999998754
No 179
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=26.08 E-value=3.7e+02 Score=23.39 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 028694 189 LERRREELEQLLV 201 (205)
Q Consensus 189 l~~rreele~lL~ 201 (205)
.|..++||...+.
T Consensus 79 pe~E~~el~~iy~ 91 (225)
T cd02434 79 PEGEKSEMVEIYS 91 (225)
T ss_pred cHHHHHHHHHHHH
Confidence 3566666655443
No 180
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=26.08 E-value=77 Score=29.29 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=11.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHH
Q 028694 160 SGILCIGCIKRARQQKEMTRDQAVKD 185 (205)
Q Consensus 160 ~GlLC~g~lKr~rq~k~~~reqa~kd 185 (205)
+|+|++=.+.-.|++|+..+|+|+++
T Consensus 226 L~ll~~lv~~~vr~krk~k~~eMEr~ 251 (278)
T PF06697_consen 226 LGLLSLLVAMLVRYKRKKKIEEMERR 251 (278)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 44443333333455555445544443
No 181
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.95 E-value=2.9e+02 Score=20.84 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 157 YVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 157 Yvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
|.+++++.-.-...+...=+.+.+...++++.++++-++++..+.
T Consensus 50 ~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 50 KLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333333334444555555555555555555543
No 182
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=25.89 E-value=1.4e+02 Score=24.11 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHH
Q 028694 161 GILCIGCIKRARQQKEM 177 (205)
Q Consensus 161 GlLC~g~lKr~rq~k~~ 177 (205)
+-+|++.+-..+|+++.
T Consensus 71 sk~~v~~m~e~~q~~ee 87 (105)
T PF11214_consen 71 SKWYVDTMVELKQKQEE 87 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55788888777777663
No 183
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=25.86 E-value=2e+02 Score=20.50 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 179 RDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+++..+.-.+++..|+||..++.+.
T Consensus 58 ~~~~~~~r~~~~~~r~~l~~ll~~~ 82 (125)
T PF13801_consen 58 RQEMRALRQELRAARQELRALLAAP 82 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455666667788888888888664
No 184
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=25.83 E-value=2.2e+02 Score=23.11 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 140 ILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
..+..+..+++.+.-+.+++-.+ ..+++.+.+++...+...++-+=|+.=|++|.+
T Consensus 72 ~Fl~a~I~FlIiA~vvFlivk~~---nk~~~~~~~~~~~~~~~~~~~~ll~eIrdlL~~ 127 (128)
T PF01741_consen 72 AFLNALINFLIIAFVVFLIVKPI---NKLKKKEEKEEAEAPAPKTCEELLTEIRDLLKK 127 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH---HHCHHTT-S----H--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhccccCCCCCCchHHHHHHHHHHHhc
Confidence 46677888888887664444332 333322222211222223444445555555544
No 185
>COG4749 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.72 E-value=1e+02 Score=27.13 Aligned_cols=28 Identities=36% Similarity=0.687 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028694 162 ILCIGCIKRARQQKEMTRDQAVKDLEDLE 190 (205)
Q Consensus 162 lLC~g~lKr~rq~k~~~reqa~kdLe~l~ 190 (205)
|.|+.. -|+..+.++++.+|.|+||+..
T Consensus 46 iAclki-~~a~~~~~isk~~Av~ele~Ir 73 (196)
T COG4749 46 IACLKI-IRAVKEREISKADAVKELEKIR 73 (196)
T ss_pred HHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 346655 4577888999999999999853
No 186
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.91 E-value=1.2e+02 Score=30.05 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 028694 107 KVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYV 158 (205)
Q Consensus 107 kvLe~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYv 158 (205)
.+|..=+.=|+.|+++|.+...+.+....+ ....+-+..+|+++-.|.+++
T Consensus 444 ~~l~lsl~iGvi~i~~g~~l~~~~~~~~~~-~~~a~~~~~~w~l~~~g~~~~ 494 (646)
T PRK05771 444 TILIISLLIGVIHLFLGLLLGFINNVRKGD-YKDAFLAQLGWLLILLGILLI 494 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 445555667999999999988776654322 223333334555544444433
No 187
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=24.87 E-value=1.5e+02 Score=25.82 Aligned_cols=26 Identities=46% Similarity=0.452 Sum_probs=21.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 175 KEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 175 k~~~reqa~kdLe~l~~rreele~lL 200 (205)
++.+.+.+.++||+||..=++||.=|
T Consensus 189 ~~e~~~~~~~~Le~LE~~Ie~lE~gl 214 (231)
T PF03087_consen 189 DEEEVQNAQKRLEELEECIEELEEGL 214 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788999999999999988643
No 188
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=24.35 E-value=4e+02 Score=25.57 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028694 183 VKDLEDLERRREELEQ 198 (205)
Q Consensus 183 ~kdLe~l~~rreele~ 198 (205)
.++|++-++-++|++.
T Consensus 38 ~~~L~eAe~a~~ea~~ 53 (445)
T PRK13428 38 RQQLAESATAADRLAE 53 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334443333333333
No 189
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.31 E-value=68 Score=25.26 Aligned_cols=16 Identities=6% Similarity=0.339 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhH
Q 028694 150 LLACGVVYVISGILCI 165 (205)
Q Consensus 150 Ll~cG~vYvl~GlLC~ 165 (205)
++.+.++-++++.+|+
T Consensus 7 iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCH 22 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444445555555
No 190
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=24.24 E-value=2.5e+02 Score=23.52 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 155 VVYVISGILCIGCIKRARQQK-EMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 155 ~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
.+..+......+.-...+-++ ...-+.++++|+.|+++|.++.+...+
T Consensus 41 ~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~ 89 (180)
T PF04678_consen 41 AVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAEK 89 (180)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554333222222 334566689999999999998876544
No 191
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.10 E-value=84 Score=19.07 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028694 185 DLEDLERRREELEQLLVA 202 (205)
Q Consensus 185 dLe~l~~rreele~lL~~ 202 (205)
|++.+..|-.+||++|..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567777778888888865
No 192
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.07 E-value=1.8e+02 Score=22.88 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 167 CIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 167 ~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
.|...-.+=+...++..+.|.-++.+..|||..|..+
T Consensus 61 ~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~l 97 (116)
T PF05064_consen 61 KLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPL 97 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343334445566777899999999999999999765
No 193
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=24.05 E-value=1.9e+02 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=17.4
Q ss_pred HHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 028694 169 KRARQQKEMTRDQAVKDLED-LERRREELEQLLVAE 203 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~-l~~rreele~lL~~~ 203 (205)
+|.-..-.++|+...+.|.. +..++.|||++=..+
T Consensus 68 RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~ 103 (120)
T PF14931_consen 68 RNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEY 103 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433334455555555544 444555666654443
No 194
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=23.95 E-value=2.3e+02 Score=23.27 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQKEMTRDQ 181 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~req 181 (205)
|.|++|=+.=-..|+.=+++.-+-++.++++.+|
T Consensus 72 y~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~~~ 105 (119)
T PF03650_consen 72 YLLFACNFFNATTQLYQLYRKLNYQYSQKKEAKQ 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Confidence 5677777766666665555544444444444444
No 195
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.88 E-value=6.4e+02 Score=24.16 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 144 NIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 144 ~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~l~~rreele~lL 200 (205)
+++.++++...+.|++-+-+ .+.+. .|+++ ..+-+.|++.-++++.-+++.|+.|
T Consensus 7 qlInFlIl~~lL~kfl~~Pi-~~~l~-~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L 62 (445)
T PRK13428 7 QLIGFAVIVFLVWRFVVPPV-RRLMA-ARQDTVRQQLAESATAADRLAEADQAHTKAV 62 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444331 22333 33333 4444444444444444444444444
No 196
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.78 E-value=3.8e+02 Score=21.33 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 028694 146 ASYMLLACGVVY 157 (205)
Q Consensus 146 aS~~Ll~cG~vY 157 (205)
+|+.|++.|..|
T Consensus 26 ~s~~m~~~gi~~ 37 (95)
T COG4298 26 ASYFMLGLGIWL 37 (95)
T ss_pred HHHHHHHHHhhe
Confidence 466777777763
No 197
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=23.44 E-value=3e+02 Score=27.19 Aligned_cols=121 Identities=12% Similarity=0.203 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhheeccCCCcccchHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHH-----------H
Q 028694 46 CYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIA----FFVALAETEWQFVLKFTKVL-----------E 110 (205)
Q Consensus 46 ~~s~VTvl~ALlciavnvis~v~sf~~~~difdgIlRcY~I~~a----llvilaEtEW~~i~kf~kvL-----------e 110 (205)
+|.+|+++.++.|+.-|.+-.+-++|.++-...=|.=|-.-+++ +.+-....+|..+|=.+++| +
T Consensus 72 ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR 151 (488)
T KOG2325|consen 72 FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLR 151 (488)
T ss_pred hhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHH
Confidence 57788899999999999885555777775333334422222222 23334456677887666654 4
Q ss_pred HHHHH---------------H--HHHHHHHHHhhhc---cCccc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 028694 111 YWVAR---------------G--MLQIFVAVMTRAF---PDYSA---KQKDLILLQNIASYMLLACGVVYVISGILCIG 166 (205)
Q Consensus 111 ~Wi~R---------------G--~lqiFVgvmt~~~---p~~~~---~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g 166 (205)
.+++- | ++=+.+|-+.... -.++| ..+--.=--+..+|.|+...++|++.-..|+.
T Consensus 152 ~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 152 AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 44332 1 1222222222110 00011 00000001257899999999999999999984
No 198
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=23.29 E-value=1.2e+02 Score=28.99 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
+..+++.+-+|.++.|.+-|=+++++++|++..
T Consensus 266 y~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l~k 298 (366)
T KOG1532|consen 266 YEEEYKPEYEKKKAEKRLAEEERKKKQLEKLMK 298 (366)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 334555566677888888888899999999864
No 199
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=22.85 E-value=8.4e+02 Score=25.62 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=35.1
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHhhhhhhheeccCCC--cccchHHHHHHHHHHHHHHHH
Q 028694 34 RNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGS--DIFDGIFRCYAVVIAFFVALA 95 (205)
Q Consensus 34 ~~~~d~~L~~cr~~s~VTvl~ALlciavnvis~v~sf~~~~--difdgIlRcY~I~~allvila 95 (205)
-.....++.+|+.+-.|+.+.++++. |..+... ..-+..+++|..+.-+.+.+.
T Consensus 268 ~~~s~~~~~~~~~~~~v~~li~lf~~--------y~~~~~~~~~~~~~~l~~~~~l~i~~l~l~ 323 (700)
T COG1480 268 LSLSVNILPLLGLLILVIFLILLFAL--------YERRTKSPLKLRNSLLLLYLSLAILTLSLL 323 (700)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHH--------HHHHhccCHHhhhhHHHHHHHHHHHHHHHH
Confidence 34567788888888888887777771 2222332 233578888887776666554
No 200
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.83 E-value=1.8e+02 Score=25.32 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 028694 184 KDLEDLERRREELEQLLV 201 (205)
Q Consensus 184 kdLe~l~~rreele~lL~ 201 (205)
.++++++++.++|.++|.
T Consensus 93 ~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 93 QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345566666666666664
No 201
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=22.82 E-value=3.8e+02 Score=20.98 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 147 SYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 147 S~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.++.+..-+-|++.+= =.+.+..++++=...-+.|++-.++.+..+++.++.|.
T Consensus 4 ~Flil~~il~~~~~~p-i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~ 57 (147)
T TIGR01144 4 SFILLVWFCMKYVWPP-LAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILK 57 (147)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333444433 34555655444466666666666665555555555554
No 202
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=22.82 E-value=1.7e+02 Score=28.20 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 171 ARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 171 ~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
++-+=+++|+|+.+|+++-++-++++++++..
T Consensus 201 a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~ 232 (379)
T PF04518_consen 201 ALAKLEKEREQIRRDIKSCERAKAVLNKQLAR 232 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555888999999999999999999999864
No 203
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.74 E-value=1.9e+02 Score=29.81 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028694 179 RDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~ 198 (205)
++++++.++++++.++++|+
T Consensus 536 ~~~~~~~~~e~~~~~~~l~~ 555 (782)
T PRK00409 536 AEEAEALLKEAEKLKEELEE 555 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 204
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=22.61 E-value=3.7e+02 Score=20.83 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
...-+.|++..++.+...++-|+.|..
T Consensus 42 ~~~l~~Ae~~~~ea~~~~~~~e~~L~~ 68 (140)
T PRK07353 42 RTNRAEAKERLAEAEKLEAQYEQQLAS 68 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666543
No 205
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=22.60 E-value=4.3e+02 Score=21.57 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
...-+.|++-.++.+..+++-|+.|..
T Consensus 47 ~~~l~~Ae~~k~eAe~~~~~~e~~L~~ 73 (167)
T PRK14475 47 QAELDEAQRLREEAQALLADVKAEREE 73 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665543
No 206
>PLN03223 Polycystin cation channel protein; Provisional
Probab=22.51 E-value=5.2e+02 Score=29.55 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028694 45 RCYSVLTSLTALLCLAV 61 (205)
Q Consensus 45 r~~s~VTvl~ALlciav 61 (205)
+++-++.++.++.|+++
T Consensus 1216 NwLEIl~IlLS~AAIvL 1232 (1634)
T PLN03223 1216 NYVDFASIGLHLATIMM 1232 (1634)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666777777765
No 207
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=22.41 E-value=2.2e+02 Score=25.39 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 164 CIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 164 C~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~l 199 (205)
|+..|+.....-+.++.+-.+-|++|++.+++|+..
T Consensus 209 ~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~r 244 (254)
T PF15458_consen 209 CLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEER 244 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 337888888888999999999999999999998764
No 208
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.37 E-value=1.8e+02 Score=30.42 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHhh
Q 028694 164 CIGCIKRARQQKEMTRDQA-VKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 164 C~g~lKr~rq~k~~~reqa-~kdLe~l~~rreele~lL~~ 202 (205)
|+..++..|..++..-..| .|--.++++.|.|||..|..
T Consensus 57 c~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e 96 (769)
T PF05911_consen 57 CMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAE 96 (769)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999988776666 56667788888888877653
No 209
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.96 E-value=4.5e+02 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028694 140 ILLQNIASYMLLACGVVYVISG 161 (205)
Q Consensus 140 ~l~~~IaS~~Ll~cG~vYvl~G 161 (205)
.+..++..++.+...+.|++-.
T Consensus 26 ~~~~~~Inflill~lL~~fl~k 47 (184)
T CHL00019 26 ILETNLINLSVVLGVLIYFGKG 47 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 3444677777766666665543
No 210
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=21.89 E-value=2.2e+02 Score=26.47 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 028694 148 YMLLACGVVYVISGILCIG 166 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g 166 (205)
.+++|.|.+.+=..++--.
T Consensus 174 i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 174 IILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHHHhccHHHHHHHHHHhc
Confidence 3456667766666666543
No 211
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.75 E-value=2.6e+02 Score=24.20 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028694 183 VKDLEDLERRREELEQLL 200 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL 200 (205)
.++++.|+.+.+++++++
T Consensus 62 ~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 212
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=21.39 E-value=1.4e+02 Score=29.41 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 179 RDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~~ 202 (205)
-++.++++++||.+.++||..|..
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~ 593 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVAD 593 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567777788888888877753
No 213
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.20 E-value=2.5e+02 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 178 TRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 178 ~reqa~kdLe~l~~rreele~lL~~ 202 (205)
..+.|+++|.++...+.+++..+..
T Consensus 53 ~ae~a~~~L~~~~~~~~~i~e~~~k 77 (126)
T PF09403_consen 53 EAEAAEAELAELKELYAEIEEKIEK 77 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3566788888888888888776643
No 214
>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=21.15 E-value=3.3e+02 Score=20.78 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHH
Q 028694 158 VISGILCIGCIKRARQQKEMTRDQAVKDLED----LERRREELEQ 198 (205)
Q Consensus 158 vl~GlLC~g~lKr~rq~k~~~reqa~kdLe~----l~~rreele~ 198 (205)
+.+||++ |..+++.-++...+++++++++. .++.|.|-++
T Consensus 18 L~~Gv~Y-G~~~~~~L~~~~~~~~~~~e~~~~eklie~AK~a~ak 61 (86)
T PF05680_consen 18 LGLGVVY-GAYHQRYLKAKAKKEAAEREYEAKEKLIEQAKAAYAK 61 (86)
T ss_pred HHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556664 66666665544444444444333 3344444443
No 215
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.11 E-value=2.6e+02 Score=22.14 Aligned_cols=7 Identities=29% Similarity=0.824 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 028694 192 RREELEQ 198 (205)
Q Consensus 192 rreele~ 198 (205)
++++|++
T Consensus 88 ~~k~i~~ 94 (100)
T PF04568_consen 88 HRKEIDE 94 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 216
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.08 E-value=2.2e+02 Score=29.42 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 028694 106 TKVLEYWVARG 116 (205)
Q Consensus 106 ~kvLe~Wi~RG 116 (205)
+.+|+++..+|
T Consensus 425 ~aiLe~l~~~g 435 (771)
T TIGR01069 425 ISILEYLLKQN 435 (771)
T ss_pred HHHHHHHHhcC
Confidence 34555555444
No 217
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=21.06 E-value=5.7e+02 Score=22.40 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028694 144 NIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLE 190 (205)
Q Consensus 144 ~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~ 190 (205)
+++++.-...-..|.+.|.++...+-+.-.+-..++++.+-|....+
T Consensus 166 ~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l 212 (281)
T PF06472_consen 166 SISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYAL 212 (281)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHH
Confidence 33444444566788899999998888777777777777777776544
No 218
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=21.00 E-value=2.7e+02 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 028694 136 QKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQ 174 (205)
Q Consensus 136 ~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~ 174 (205)
...+.-|.-+=-.+.+.+|.++++.|+.-+-.+|+.-++
T Consensus 176 ~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~ 214 (328)
T PF01534_consen 176 PSALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKH 214 (328)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 445666666666778889999999999887666654443
No 219
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=20.96 E-value=4.3e+02 Score=25.61 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028694 102 VLKFTKVLEYWVARGMLQIFVAVMTRAFPD 131 (205)
Q Consensus 102 i~kf~kvLe~Wi~RG~lqiFVgvmt~~~p~ 131 (205)
+...++.-+.=-+=|++..|-|+-++.-|-
T Consensus 413 ~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpP 442 (509)
T KOG2504|consen 413 LVDLVGLEKLSNAYGLLLLFQGIGALVGPP 442 (509)
T ss_pred HHHHcChhhcchHHHHHHHHhHHHHHcCcc
Confidence 334444444445557777777777766544
No 220
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=20.94 E-value=1.8e+02 Score=22.13 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=23.6
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhhh
Q 028694 35 NRADPLLVVCRCYSVLTSLTALLCLAVNVL 64 (205)
Q Consensus 35 ~~~d~~L~~cr~~s~VTvl~ALlciavnvi 64 (205)
.+...+-++|-++||++.+.|-.+.+....
T Consensus 31 ~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~ 60 (97)
T PF06749_consen 31 SRNRTLAVVFFVLSWIVFIIAEALLLAGAS 60 (97)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444567899999999999998777776654
No 221
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=20.89 E-value=4.9e+02 Score=21.54 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 150 LLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 150 Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
++..-+++.++.-+=.+-+++.- +.++++..+++++-++.++|.++++..+
T Consensus 31 ~Inflill~lL~~fl~kPI~~~l---~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 81 (184)
T CHL00019 31 LINLSVVLGVLIYFGKGVLSDLL---DNRKQTILNTIRNSEERREEAIEKLEKA 81 (184)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333222 3344555777777777777777666554
No 222
>PF00357 Integrin_alpha: Integrin alpha cytoplasmic region; InterPro: IPR018184 Some alpha subunits are cleaved post- translationally to produce a heavy and a light chain linked by a disulphide bond [, ]. Integrin alpha chains share a conserved sequence which is found at the beginning of the cytoplasmic domain, just after the end of the transmembrane region. Within the N-terminal domain of alpha subunits, seven sequence repeats, each of approximately 60 amino acids, have been found []. It has been predicted that these repeats assume the beta-propeller fold. The domains contain seven four-stranded beta-sheets arranged in a torus around a pseudosymmetry axis []. Integrin ligands and a putative Mg2+ ion are predicted to bind to the upper face of the propeller, in a manner analogous to the way in which the trimeric G-protein beta subunit (G beta) (which also has a beta-propeller fold) binds the G protein alpha subunit []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences []. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first ten residues of the alpha-subunit cytoplasmic domain appear to form an alpha helix that is terminated by a proline residue. The remainder of the domain is highly acidic in nature and this loops back to contact the membrane-proximal lysine anchor residue. This entry represents the conserved site of the C-terminal integrin alpha chain. ; PDB: 2LKJ_A 2LKE_A 2K8O_A 1DPK_A 2K9J_A 1DPQ_A 1S4W_A 1M8O_A 2K1A_A 2KNC_A ....
Probab=20.87 E-value=42 Score=18.53 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 028694 165 IGCIKRARQQK 175 (205)
Q Consensus 165 ~g~lKr~rq~k 175 (205)
+|++||.|...
T Consensus 2 ~GFFKR~~~~~ 12 (15)
T PF00357_consen 2 CGFFKRQRPPQ 12 (15)
T ss_dssp CCHHHHHHHHC
T ss_pred cccccccCccc
Confidence 58899887654
No 223
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.87 E-value=1.4e+02 Score=30.97 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=25.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 173 QQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 173 q~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+-..-+..+-++|+++|++++++|+.+|..+
T Consensus 420 ~L~~le~~~i~~E~~~l~~e~~~l~~~L~~~ 450 (735)
T TIGR01062 420 HLAKLEEHAIIDEQSELEKERAILEKILKSE 450 (735)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3334567788999999999999999999754
No 224
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=20.78 E-value=1e+02 Score=25.38 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028694 180 DQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 180 eqa~kdLe~l~~rreele~lL 200 (205)
.....+|+.||+|+|+|-.+.
T Consensus 75 ~~~~~~L~~Le~r~e~Lk~~~ 95 (120)
T PF04521_consen 75 SDLNLELEKLERREEQLKTQI 95 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999987643
No 225
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=20.63 E-value=8.3e+02 Score=25.22 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=9.2
Q ss_pred HHHHHHHHH-HHHHHHHH
Q 028694 180 DQAVKDLED-LERRREEL 196 (205)
Q Consensus 180 eqa~kdLe~-l~~rreel 196 (205)
+.+..+||. .+.|..||
T Consensus 330 ~~a~~eLE~rV~eRTadL 347 (603)
T COG4191 330 QEARAELERRVEERTADL 347 (603)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335566654 45555555
No 226
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=20.54 E-value=5.7e+02 Score=22.20 Aligned_cols=60 Identities=10% Similarity=0.166 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 141 LLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 141 l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
++-++..++++..-+.|++.+=+ .+.+..++++=+..-+.|++..++.+..++|-|+.|.
T Consensus 8 ~~~qiInFlil~~lL~kfl~kPi-~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~ 67 (246)
T TIGR03321 8 VIAQLINFLILVWLLKRFLYRPI-LDAMDAREKKIAGELADADTKKREAEQERREYEEKNE 67 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544432 2334433333355555555555555555555555554
No 227
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=20.53 E-value=3.5e+02 Score=25.77 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 028694 184 KDLEDLERRREELEQ 198 (205)
Q Consensus 184 kdLe~l~~rreele~ 198 (205)
-|+|++.+||+.||+
T Consensus 99 ~dl~~l~~qkd~L~~ 113 (322)
T TIGR03782 99 LDMNRYREQKDKLEY 113 (322)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555444
No 228
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=20.52 E-value=5.6e+02 Score=22.09 Aligned_cols=62 Identities=23% Similarity=0.161 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 139 LILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 139 ~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
..+|+-| ++.+|..-+-.++..= =.+.+..++++=+..-++|++..++.++.+++-|+.|..
T Consensus 55 ~l~w~~I-~FliL~~lL~k~~~~p-I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~ 116 (204)
T PRK09174 55 QLLWLAI-TFGLFYLFMSRVILPR-IGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQ 116 (204)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 3444443343443331 123334333333555556666666666655555555543
No 229
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=20.44 E-value=2.8e+02 Score=19.22 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028694 183 VKDLEDLERRREELEQLL 200 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL 200 (205)
.+-|+++.+|=|.||..+
T Consensus 29 t~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 29 TQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 556888999988888765
No 230
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=20.13 E-value=4.6e+02 Score=22.79 Aligned_cols=44 Identities=20% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 158 VISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 158 vl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
+++|---...++..++.+++..++-++-.++|++.|+.-++||-
T Consensus 165 vl~~~q~~a~~~l~~~le~~~~~~Le~~~~~l~~ek~ktd~LL~ 208 (219)
T PF07701_consen 165 VLLGQQQSAELKLAKQLEQEKSAELEESMRELEEEKKKTDELLY 208 (219)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333434433333334444444556666666666663
No 231
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.11 E-value=2e+02 Score=25.81 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Q 028694 168 IKRARQQKEMT---RDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 168 lKr~rq~k~~~---reqa~kdLe~l~~rreele~lL 200 (205)
+|+..|+|.++ =++-+++|-|+|+|=..|.++|
T Consensus 61 LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQL 96 (211)
T COG3167 61 LKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQL 96 (211)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhC
Confidence 45555555444 2334566667777766666665
No 232
>PRK09848 glucuronide transporter; Provisional
Probab=20.10 E-value=3e+02 Score=24.69 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 028694 181 QAVKDLEDLERRRE 194 (205)
Q Consensus 181 qa~kdLe~l~~rre 194 (205)
+.++-.+|+++||+
T Consensus 433 ~~~~~~~~l~~~~~ 446 (448)
T PRK09848 433 KFKEIVVEIDNRKK 446 (448)
T ss_pred HHHHHHHHHHHhhh
Confidence 33344444445543
No 233
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.07 E-value=2.1e+02 Score=20.20 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 177 MTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 177 ~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
.++++.+|+++.+++.-+.+++-|..
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556667777777766666666654
No 234
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=20.05 E-value=3.9e+02 Score=20.54 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhheeccCC-CcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028694 47 YSVLTSLTALLCLAVNVLSAIRSFKNG-SDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVL 109 (205)
Q Consensus 47 ~s~VTvl~ALlciavnvis~v~sf~~~-~difdgIlRcY~I~~allvilaEtEW~~i~kf~kvL 109 (205)
++.-++++..+.++...+-+.+.+++. +.-+|-++=.-+.+-++..++-.---.+++-|..++
T Consensus 5 ~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l 68 (84)
T PF07444_consen 5 FGPSYILGIILILGGLALYFLRFFRPEVSRDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQML 68 (84)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHCcchhhhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 345566666666677777677776666 222333333334444433333322223666666554
Done!