Query 028694
Match_columns 205
No_of_seqs 36 out of 38
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 02:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eff_K Voltage-gated potassium 95.0 0.48 1.6E-05 36.0 11.5 88 115-204 43-138 (139)
2 4hkr_A Calcium release-activat 93.7 2 6.9E-05 37.0 13.7 130 37-202 56-200 (214)
3 3vou_A ION transport 2 domain 93.7 1.6 5.4E-05 33.6 12.1 78 115-194 55-137 (148)
4 4h33_A LMO2059 protein; bilaye 85.1 1.7 5.8E-05 33.4 5.7 49 114-164 45-93 (137)
5 3pjs_K KCSA, voltage-gated pot 84.3 0.46 1.6E-05 37.5 2.2 87 116-204 71-165 (166)
6 3lvh_D LCB, clathrin light cha 79.0 1.9 6.6E-05 36.9 4.2 32 170-201 119-151 (205)
7 1gl2_C VTI1B, vesicle transpor 78.1 4.7 0.00016 27.8 5.3 33 166-198 9-41 (65)
8 3lvg_D LCB, clathrin light cha 76.9 2.5 8.5E-05 35.8 4.2 33 170-202 104-137 (190)
9 1nhl_A Synaptosomal-associated 76.0 5.1 0.00018 26.8 4.9 31 169-199 3-33 (54)
10 2a9h_A Voltage-gated potassium 75.8 17 0.00057 28.6 8.6 51 113-165 85-135 (155)
11 1ci6_A Transcription factor AT 75.5 6.3 0.00022 27.1 5.4 34 169-202 15-48 (63)
12 3vou_A ION transport 2 domain 72.3 17 0.00059 27.6 7.8 53 151-203 80-139 (148)
13 3rvy_A ION transport protein; 71.1 4 0.00014 33.8 4.1 49 153-201 225-280 (285)
14 3rvy_A ION transport protein; 67.1 7 0.00024 32.3 4.8 17 114-130 182-198 (285)
15 1n7s_C SNAP-25A; neuronal snar 65.9 13 0.00045 26.6 5.5 33 166-198 23-55 (79)
16 1hjb_A Ccaat/enhancer binding 64.1 16 0.00053 27.1 5.7 33 168-200 27-59 (87)
17 1jnm_A Proto-oncogene C-JUN; B 64.0 16 0.00055 24.7 5.4 33 169-201 14-46 (62)
18 1gu4_A CAAT/enhancer binding p 63.2 17 0.00059 26.3 5.7 33 168-200 27-59 (78)
19 2dgc_A Protein (GCN4); basic d 62.8 17 0.00058 25.1 5.4 33 169-201 22-54 (63)
20 3ukm_A Potassium channel subfa 60.3 36 0.0012 29.6 8.2 51 115-165 204-259 (280)
21 2w6b_A RHO guanine nucleotide 55.6 30 0.001 24.1 5.5 34 168-201 15-48 (56)
22 1t2k_D Cyclic-AMP-dependent tr 54.7 29 0.001 23.2 5.4 33 169-201 14-46 (61)
23 2nps_C Vesicle transport throu 53.0 26 0.00088 25.1 5.1 32 167-198 20-51 (81)
24 2wt7_A Proto-oncogene protein 52.2 33 0.0011 23.3 5.4 32 169-200 15-46 (63)
25 2i68_A Protein EMRE; transmemb 49.0 90 0.0031 24.1 8.2 18 152-169 88-105 (137)
26 3um7_A Potassium channel subfa 46.8 60 0.0021 28.5 7.5 78 115-200 227-308 (309)
27 3ukm_A Potassium channel subfa 44.2 97 0.0033 26.9 8.3 28 148-175 14-41 (280)
28 1xi4_J LCA, clathrin light cha 42.8 31 0.0011 24.6 4.1 31 170-200 28-59 (70)
29 2lw1_A ABC transporter ATP-bin 42.2 39 0.0013 24.2 4.7 27 176-202 21-47 (89)
30 2knc_A Integrin alpha-IIB; tra 38.0 14 0.00048 25.4 1.6 34 138-175 13-46 (54)
31 3q8t_A Beclin-1; autophagy, AT 33.3 93 0.0032 22.9 5.6 33 171-203 12-44 (96)
32 2e0g_A Chromosomal replication 32.9 52 0.0018 23.6 4.1 24 11-34 82-105 (107)
33 3t97_C Nuclear pore glycoprote 32.9 1E+02 0.0034 21.6 5.4 29 176-204 25-53 (64)
34 1a93_B MAX protein, coiled coi 32.8 63 0.0021 20.4 3.9 19 183-201 13-31 (34)
35 2jwa_A Receptor tyrosine-prote 32.1 42 0.0014 22.1 3.1 24 152-175 18-41 (44)
36 4ain_A Glycine betaine transpo 31.8 1.4E+02 0.0047 28.5 7.8 41 157-197 490-532 (539)
37 3he5_B Synzip2; heterodimeric 30.0 71 0.0024 21.5 4.0 31 169-201 4-34 (52)
38 1ic2_A Tropomyosin alpha chain 28.9 1.5E+02 0.0051 20.7 6.0 19 180-198 23-41 (81)
39 1nkp_B MAX protein, MYC proto- 28.3 78 0.0027 22.1 4.3 24 180-203 57-80 (83)
40 3drq_C GP41 peptide epitope; H 28.3 66 0.0023 19.8 3.4 19 173-191 11-29 (35)
41 1l4a_C S-SNAP25 fusion protein 26.8 1.5E+02 0.005 21.5 5.6 32 168-199 29-60 (83)
42 3beh_A MLL3241 protein; transm 26.1 2.8E+02 0.0094 23.1 8.0 49 114-164 163-211 (355)
43 3b5n_C Protein transport prote 25.3 1.6E+02 0.0056 20.6 5.5 31 168-198 14-44 (70)
44 1zme_C Proline utilization tra 25.2 65 0.0022 20.9 3.2 17 186-202 46-62 (70)
45 3gwo_A Envelope glycoprotein G 24.4 1E+02 0.0036 20.6 4.1 19 173-191 18-36 (54)
46 1q08_A Zn(II)-responsive regul 23.3 1.1E+02 0.0038 21.1 4.3 27 176-202 45-71 (99)
47 4dvz_A Cytotoxicity-associated 22.8 59 0.002 31.0 3.5 27 176-202 349-375 (569)
48 2l8s_A Integrin alpha-1; trans 22.7 32 0.0011 23.7 1.3 34 138-175 10-43 (54)
49 1dh3_A Transcription factor CR 22.3 1.8E+02 0.006 19.3 5.4 14 184-197 22-35 (55)
50 2p22_A Suppressor protein STP2 22.3 1.4E+02 0.0049 24.5 5.3 33 168-200 47-79 (174)
51 4gx0_A TRKA domain protein; me 22.1 2.4E+02 0.0084 25.2 7.3 20 115-134 54-73 (565)
52 3hnw_A Uncharacterized protein 21.9 1.7E+02 0.0058 22.8 5.5 22 179-200 105-126 (138)
53 3twe_A Alpha4H; unknown functi 21.7 88 0.003 18.6 2.9 19 182-200 6-24 (27)
54 3zwh_Q Myosin-9; Ca-binding pr 21.3 13 0.00046 24.7 -0.8 22 181-202 3-24 (45)
55 3oja_B Anopheles plasmodium-re 21.3 1.6E+02 0.0056 26.3 6.0 9 183-191 543-551 (597)
56 2lw9_A Unconventionnal myosin- 20.8 1.6E+02 0.0055 20.1 4.4 22 180-201 9-30 (51)
57 2vz4_A Tipal, HTH-type transcr 20.3 1.2E+02 0.004 21.8 4.0 28 176-203 80-107 (108)
No 1
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=94.96 E-value=0.48 Score=35.98 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HhH-----HHHHHHH
Q 028694 115 RGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKE---MTR-----DQAVKDL 186 (205)
Q Consensus 115 RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~---~~r-----eqa~kdL 186 (205)
..++..++-.-|..|-|.......-.++- .-+++++++.+-++.|.+--...++.+++++ ... +.-.++.
T Consensus 43 ~a~yf~~~T~tTvGyGd~~P~t~~~r~~~--~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (139)
T 3eff_K 43 RALWWSVETATTVGYGDLYPVTLWGRLVA--VVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTT 120 (139)
T ss_dssp HHHHHHHHHHTTCCCSSSCCCSSHHHHHH--HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHheeeecccCCCCcCCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34677788788888877544322222221 2234445544444444443322222211111 111 1223455
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 028694 187 EDLERRREELEQLLVAER 204 (205)
Q Consensus 187 e~l~~rreele~lL~~~~ 204 (205)
+++..|-++||+.+.++|
T Consensus 121 ~~l~~~l~~le~~~~~~r 138 (139)
T 3eff_K 121 RALHERFDRLERMLDDNR 138 (139)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 667777777777776665
No 2
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=93.67 E-value=2 Score=36.99 Aligned_cols=130 Identities=17% Similarity=0.246 Sum_probs=71.8
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhh--hhhheeccCCCccc---c---hHHHHH-------HHHHHHHHHHHhhhhHH
Q 028694 37 ADPLLVVCRCYSVLTSLTALLCLAVNV--LSAIRSFKNGSDIF---D---GIFRCY-------AVVIAFFVALAETEWQF 101 (205)
Q Consensus 37 ~d~~L~~cr~~s~VTvl~ALlciavnv--is~v~sf~~~~dif---d---gIlRcY-------~I~~allvilaEtEW~~ 101 (205)
++++|+++.+...+++..-++|+.+-. ++-+..+.+-.++- + .=+|.| .-.++++..++|----.
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~ 135 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC 135 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367888888888777777776665432 23333332222111 1 114544 23455566666666556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 028694 102 VLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQ 181 (205)
Q Consensus 102 i~kf~kvLe~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~req 181 (205)
++|||++-.. . --+++.+|+-.++++++.++-=-+.+- ....|+
T Consensus 136 WVKF~~~~~~--------------------------a----a~~~t~vliPv~i~F~~Fa~hFYrsL~------~hk~e~ 179 (214)
T 4hkr_A 136 WVKFYDLSRR--------------------------A----AWSATVVLIPVMIIFMAFAIHFYRSLV------SHKYEV 179 (214)
T ss_dssp HHHHTTTCHH--------------------------H----HHHHHHHTHHHHHHHHHHHHHHHHHHH------HTHHHH
T ss_pred eEEeecCCcH--------------------------H----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 6666654321 1 113456778888999888764332222 223556
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 028694 182 AVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 182 a~kdLe~l~~rreele~lL~~ 202 (205)
..++++|||+.+++||+-...
T Consensus 180 ~~~~i~el~~~~~~l~~~~~~ 200 (214)
T 4hkr_A 180 TVSGIRELEMLKEQMEQDHLE 200 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 678899999999999986654
No 3
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=93.65 E-value=1.6 Score=33.58 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHHHHH
Q 028694 115 RGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIG-----CIKRARQQKEMTRDQAVKDLEDL 189 (205)
Q Consensus 115 RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g-----~lKr~rq~k~~~reqa~kdLe~l 189 (205)
-.++..++-.-|.+|-|.......-.++ ..-+++++++++-.+.|.+.-. ..++.+.++...+.+..+.++++
T Consensus 55 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 55 DALYFSVVTLTTVGDGNFSPQTDFGKVF--TILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHTTCCCSSCCCCSHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777778887765433222222 1223344444444444444321 12222223333344444445544
Q ss_pred HHHHH
Q 028694 190 ERRRE 194 (205)
Q Consensus 190 ~~rre 194 (205)
+++-+
T Consensus 133 ~~~~~ 137 (148)
T 3vou_A 133 EKKLA 137 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 4
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=85.14 E-value=1.7 Score=33.37 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 114 ARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILC 164 (205)
Q Consensus 114 ~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC 164 (205)
..++..+++-.-|.+|-|.......-.++ .+.++++|++++=++.|.+-
T Consensus 45 ~~a~y~~~~T~tTvGyGDi~P~t~~gr~~--~~~~~~~g~~~~~~~~~~i~ 93 (137)
T 4h33_A 45 PDALWWAIVTATTVGYGDIVPVTPIGRIL--ASIMMLFGIAFIGMITSTIT 93 (137)
T ss_dssp HHHHHHHHHHHTTCCCSSSCCCSHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCCCCCCCHhHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 35778888888889988865533322222 22344555555545555443
No 5
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=84.32 E-value=0.46 Score=37.46 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHh------HHHHHHHHH
Q 028694 116 GMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRAR--QQKEMT------RDQAVKDLE 187 (205)
Q Consensus 116 G~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~r--q~k~~~------reqa~kdLe 187 (205)
.++.+++-.-|..|-|.......-.++ ..-+++++++++=++.|.+--....+.. +++.++ .+...++++
T Consensus 71 a~yf~~~T~tTvGyGDi~P~t~~~r~~--~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 148 (166)
T 3pjs_K 71 ALWWSVETATTVGYGDLYPVTLWGRLV--AVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTR 148 (166)
T ss_dssp TTTTTHHHHSCCCCSSSCCCSSTTTTT--THHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCCCCHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777778886644321111111 1123344444444444444332222111 111111 112356678
Q ss_pred HHHHHHHHHHHHHhhhc
Q 028694 188 DLERRREELEQLLVAER 204 (205)
Q Consensus 188 ~l~~rreele~lL~~~~ 204 (205)
+|..+=++||+.+.++|
T Consensus 149 ~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 149 ALHERFDRLERMLDDNR 165 (166)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88888889999988876
No 6
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=79.04 E-value=1.9 Score=36.90 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHh
Q 028694 170 RARQQKEMTRDQAVKDLEDLERRR-EELEQLLV 201 (205)
Q Consensus 170 r~rq~k~~~reqa~kdLe~l~~rr-eele~lL~ 201 (205)
.++.+|+.+++||.|||+++.+++ +.+|+-..
T Consensus 119 ~sekkk~E~rekAkKeLddwY~~yneqlEK~ka 151 (205)
T 3lvh_D 119 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999977665 45555443
No 7
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=78.12 E-value=4.7 Score=27.84 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 166 GCIKRARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 166 g~lKr~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
..++++++--..+.+=...-|++|++|||.|++
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~ 41 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLER 41 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Confidence 356777777777788889999999999999986
No 8
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=76.89 E-value=2.5 Score=35.76 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=24.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHhh
Q 028694 170 RARQQKEMTRDQAVKDLEDLERRR-EELEQLLVA 202 (205)
Q Consensus 170 r~rq~k~~~reqa~kdLe~l~~rr-eele~lL~~ 202 (205)
.++.+|+.+++||+|||++..+++ +++|+-...
T Consensus 104 ~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~ 137 (190)
T 3lvg_D 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999976655 455554433
No 9
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=76.00 E-value=5.1 Score=26.75 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~l 199 (205)
+|+++--+.+.+-..+-+++|++|+|.|++-
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~ 33 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRI 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 4556666777788899999999999999863
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=75.80 E-value=17 Score=28.60 Aligned_cols=51 Identities=6% Similarity=-0.094 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 028694 113 VARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCI 165 (205)
Q Consensus 113 i~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~ 165 (205)
+...++..++-.-|..|-|.......-.++ .+.+++.+.+++=+..|.+--
T Consensus 85 ~~~a~y~s~vTltTVGYGDi~P~t~~gr~~--~~~~~l~Gv~~~a~~~~~i~~ 135 (155)
T 2a9h_A 85 YPDALWWSVETATTVGYGDLYPVTLWGRCV--AVVVMVAGITSYGLVFAAVAT 135 (155)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeheeeeeeecccCCCCCCCChhHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 456788888887888887765433222222 122334444444444455443
No 11
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.45 E-value=6.3 Score=27.13 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
.|.|++|..+-+..+.+.++|+.+..+|+..+..
T Consensus 15 ~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~ 48 (63)
T 1ci6_A 15 TRYRQKKRAEQEALTGECKELEKKNEALKERADS 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999988888999999999999998876643
No 12
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=72.30 E-value=17 Score=27.63 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH----HH---HHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 151 LACGVVYVISGILCIGCIKRAR----QQ---KEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 151 l~cG~vYvl~GlLC~g~lKr~r----q~---k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
-...++|++.|+..++.+=..- +. .+..+++..+.-.+..+|-+++|+.+.++
T Consensus 80 r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~ 139 (148)
T 3vou_A 80 KVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEH 139 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888877666543322 21 22333334444555666777888888765
No 13
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=71.11 E-value=4 Score=33.80 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHh
Q 028694 153 CGVVYVISGILCIGCIKRARQQKEMTR-------DQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 153 cG~vYvl~GlLC~g~lKr~rq~k~~~r-------eqa~kdLe~l~~rreele~lL~ 201 (205)
.+++=++.|+..-..-....+++++++ ++..+++++++++-+||++++.
T Consensus 225 ~~~lnl~~aii~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 225 FVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp HHHHHHHHHHHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555566666555332222222222 2234455556655556655553
No 14
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=67.11 E-value=7 Score=32.30 Aligned_cols=17 Identities=6% Similarity=0.325 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 028694 114 ARGMLQIFVAVMTRAFP 130 (205)
Q Consensus 114 ~RG~lqiFVgvmt~~~p 130 (205)
+..+...|+-.-|-++.
T Consensus 182 ~~a~~~~~~~~T~~g~~ 198 (285)
T 3rvy_A 182 GESFYTLFQVMTLESWS 198 (285)
T ss_dssp HHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 34566666554445566
No 15
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=65.87 E-value=13 Score=26.62 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 166 GCIKRARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 166 g~lKr~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
..++|++.--+.+.+-..+-|++|++|+|.|++
T Consensus 23 ~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r 55 (79)
T 1n7s_C 23 ESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDR 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 345777777777788889999999999999986
No 16
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.10 E-value=16 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
.|++|+++...-...++..++|++.-++|.+.+
T Consensus 27 arrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888876666666666666666666655544
No 17
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.04 E-value=16 Score=24.70 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=26.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.++|++|...-+..+.+.++|+...++|...+.
T Consensus 14 ~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 14 SKSRKRKLERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888889888888877654
No 18
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=63.15 E-value=17 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
.|++|+++...-+..++..++|++.-+.|+..+
T Consensus 27 akrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887777777777777777666666544
No 19
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.82 E-value=17 Score=25.07 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
+++|++|...-+..+...++|+....+|+..+.
T Consensus 22 rrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 22 RRSRARKLQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888877777778888888888777776554
No 20
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=60.27 E-value=36 Score=29.60 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhhccCccc----chhhHHHHHHHH-HHHHHHHHHHHHHHHHHhH
Q 028694 115 RGMLQIFVAVMTRAFPDYSA----KQKDLILLQNIA-SYMLLACGVVYVISGILCI 165 (205)
Q Consensus 115 RG~lqiFVgvmt~~~p~~~~----~~~~~~l~~~Ia-S~~Ll~cG~vYvl~GlLC~ 165 (205)
-+++..|+-.-|..|-|... +++...+++-++ -|++++.+.+..+.+.++-
T Consensus 204 da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~ 259 (280)
T 3ukm_A 204 ESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCE 259 (280)
T ss_dssp HHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888866333 334444555443 4556666666666665543
No 21
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=55.64 E-value=30 Score=24.15 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
+|..-+.=.++-+++.|-||+=.+.|.+||.++-
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455667777888888888888887764
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.67 E-value=29 Score=23.22 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=24.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.++|++|...-++.+.+.++|+....+|+.-+.
T Consensus 14 ~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 14 SRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788877777778888888877777766543
No 23
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=53.04 E-value=26 Score=25.09 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 167 CIKRARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 167 ~lKr~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
.+++++.--..+.+=...-|++|++|||.|++
T Consensus 20 ~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~ 51 (81)
T 2nps_C 20 RLEAGYQIAVETEQIGQEMLENLSHDRERIQR 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555555555555568889999999999986
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.19 E-value=33 Score=23.26 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=21.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
.++|++|..+-+..+.+.++|+...++|...+
T Consensus 15 ~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 15 AKCRNRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776666666667766666665544
No 25
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=48.97 E-value=90 Score=24.09 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 028694 152 ACGVVYVISGILCIGCIK 169 (205)
Q Consensus 152 ~cG~vYvl~GlLC~g~lK 169 (205)
..|+.-++.|+..+...+
T Consensus 88 ~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 88 IIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 367777888888876543
No 26
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=46.78 E-value=60 Score=28.54 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhhccCcccc---hhhHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 028694 115 RGMLQIFVAVMTRAFPDYSAK---QKDLILLQN-IASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLE 190 (205)
Q Consensus 115 RG~lqiFVgvmt~~~p~~~~~---~~~~~l~~~-IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~ 190 (205)
-+++..|+-.-|..|-|.... .+.-..|+- ..-|++++.+.+.++.+. ++..-+...+ |..++.+++.
T Consensus 227 da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~--i~~~~~~~~~------r~~~~~~~l~ 298 (309)
T 3um7_A 227 EAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTT--IGNWLRVVSR------RTRAEMGGLT 298 (309)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHH--HHHHTTTTTT------TC--------
T ss_pred HHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------HHHHHHhHHH
Confidence 467788888888888764331 111012222 223555556665555554 4443221111 1124556667
Q ss_pred HHHHHHHHHH
Q 028694 191 RRREELEQLL 200 (205)
Q Consensus 191 ~rreele~lL 200 (205)
...+|||.+.
T Consensus 299 ~h~a~le~~~ 308 (309)
T 3um7_A 299 AQSNSLEVLF 308 (309)
T ss_dssp ----------
T ss_pred HHHHHHHHhh
Confidence 7777777653
No 27
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=44.17 E-value=97 Score=26.88 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 028694 148 YMLLACGVVYVISGILCIGCIKRARQQK 175 (205)
Q Consensus 148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~k 175 (205)
..|+.|=+.|.++|.+-+..+-+-..++
T Consensus 14 ~lLil~~~~Yl~~GA~vF~~LE~p~E~~ 41 (280)
T 3ukm_A 14 GFLVLGYLLYLVFGAVVFSSVELPYEDL 41 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 3455667899999999998887544443
No 28
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=42.83 E-value=31 Score=24.65 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH
Q 028694 170 RARQQKEMTRDQAVKDLEDLERRRE-ELEQLL 200 (205)
Q Consensus 170 r~rq~k~~~reqa~kdLe~l~~rre-ele~lL 200 (205)
.+..+++.++++|+|+|++...+.. .+|+..
T Consensus 28 ~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~ 59 (70)
T 1xi4_J 28 NSRKQEAEWKEKAIKELDEWYARQDEQLQKTK 59 (70)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678889999999999765543 344433
No 29
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.17 E-value=39 Score=24.15 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=21.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+.+-++..++++.||.+.++|+..|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445667788888899999999988864
No 30
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.98 E-value=14 Score=25.36 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK 175 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k 175 (205)
+.++...+++.+||+. ++..++-+|++||.|+.+
T Consensus 13 wiIi~svl~GLllL~l----i~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTI----LVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHcCcccCCCCCc
Confidence 4445555555555542 455788999999888654
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.33 E-value=93 Score=22.86 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 171 ARQQKEMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 171 ~rq~k~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
..++=+.+..++.++|++|++.++++..-|.+.
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333445556677888999999998888777543
No 32
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12}
Probab=32.89 E-value=52 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 028694 11 ISQPPPQPQPPPPPARASSGGRLR 34 (205)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~ 34 (205)
.+.|++++.|++++++...+++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ 105 (107)
T 2e0g_A 82 VTQTPQAAVTSNVAAPAQVAQTQP 105 (107)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCcchhhccccC
Confidence 444666777777666444444444
No 33
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=32.87 E-value=1e+02 Score=21.55 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVAER 204 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~~~ 204 (205)
+....+..+.|.-.+.+..|||..|..++
T Consensus 25 e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E 53 (64)
T 3t97_C 25 KLDQKRLDQELDFILSQQKELEDLLSPLE 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444557788889999999999997763
No 34
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.78 E-value=63 Score=20.44 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028694 183 VKDLEDLERRREELEQLLV 201 (205)
Q Consensus 183 ~kdLe~l~~rreele~lL~ 201 (205)
++|.++|+++-.-||.+.-
T Consensus 13 qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 7899999999999988764
No 35
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.12 E-value=42 Score=22.14 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 028694 152 ACGVVYVISGILCIGCIKRARQQK 175 (205)
Q Consensus 152 ~cG~vYvl~GlLC~g~lKr~rq~k 175 (205)
..|++-++...+.++.+.|+|++|
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHhheehhhhh
Confidence 344444455555666655555544
No 36
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=31.82 E-value=1.4e+02 Score=28.51 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH-HHHHHHHHH
Q 028694 157 YVISGILCIGCIKRARQQK-EMTRDQAVKDLED-LERRREELE 197 (205)
Q Consensus 157 Yvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~-l~~rreele 197 (205)
-+++-+.|.+.+|.-|+++ ..+++++++.+++ .+++++|-|
T Consensus 490 ~~v~llm~~sl~k~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (539)
T 4ain_A 490 LFVVIGLMFALVKDLSNDVIYLEYREQQRFNARLARERRVHNE 532 (539)
T ss_dssp HHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566678999888777654 3334444444444 334444443
No 37
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.05 E-value=71 Score=21.53 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 169 KRARQQKEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 169 Kr~rq~k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
++++..|++.|. .||--.|||....||+.+.
T Consensus 4 rnaylrkkiarl--kkdnlqlerdeqnlekiia 34 (52)
T 3he5_B 4 RNAYLRKKIARL--KKDNLQLERDEQNLEKIIA 34 (52)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH--hhhhhhhhhhHhhHHHHHH
Confidence 455555555543 3555555665556665543
No 38
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.91 E-value=1.5e+02 Score=20.73 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028694 180 DQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 180 eqa~kdLe~l~~rreele~ 198 (205)
+++..++++.+++.+++|.
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ 41 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLED 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 3344444444444444443
No 39
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.34 E-value=78 Score=22.08 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 180 DQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 180 eqa~kdLe~l~~rreele~lL~~~ 203 (205)
++.+++.++|.++.++|++.|.+-
T Consensus 57 ~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888999999999888653
No 40
>3drq_C GP41 peptide epitope; HIV-1, 2F5, NMAB, immune system; 2.00A {Homo sapiens} PDB: 3d0l_C 3drt_C 3egs_C
Probab=28.31 E-value=66 Score=19.83 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 028694 173 QQKEMTRDQAVKDLEDLER 191 (205)
Q Consensus 173 q~k~~~reqa~kdLe~l~~ 191 (205)
.+-++.+||.+|||.+|.+
T Consensus 11 e~sq~qqekNek~Ll~Ld~ 29 (35)
T 3drq_C 11 GAAGSKKXKNEQELLELDK 29 (35)
T ss_pred HHHHhhHHhhHHHHHHHHH
Confidence 3445566888899988864
No 41
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=26.82 E-value=1.5e+02 Score=21.54 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQL 199 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~l 199 (205)
.+|...--+..++-+.+-+++|++|.|.|++-
T Consensus 29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~ri 60 (83)
T 1l4a_C 29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777888899999999999999863
No 42
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=26.11 E-value=2.8e+02 Score=23.14 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 114 ARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILC 164 (205)
Q Consensus 114 ~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC 164 (205)
...++..|+-..|.+|-|.........++. +.+++.+++++=+..|.+-
T Consensus 163 ~~s~y~~~~t~ttvGygd~~p~t~~~~~~~--~~~~~~g~~~~~~~~~~i~ 211 (355)
T 3beh_A 163 PQAMWWAVVTLSTTGYGDTIPQSFAGRVLA--GAVMMSGIGIFGLWAGILA 211 (355)
T ss_dssp HHHHHHHHHHHTTCCCSSSCCCSHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeecCCCCCCCCChhHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 356666777666677766443322222221 1244444444444445544
No 43
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=25.31 E-value=1.6e+02 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQ 198 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~ 198 (205)
.+|+.+--+..++-+.+-|+.|+.|.|.|++
T Consensus 14 Trr~L~~a~e~e~~g~~Tl~~L~~QgEqL~r 44 (70)
T 3b5n_C 14 TRNTLKMAQDAERAGMNTLGMLGHQSEQLNN 44 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3555666666777778889999999998875
No 44
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.21 E-value=65 Score=20.94 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 028694 186 LEDLERRREELEQLLVA 202 (205)
Q Consensus 186 Le~l~~rreele~lL~~ 202 (205)
+++|+.|-++||++|..
T Consensus 46 ~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666655543
No 45
>3gwo_A Envelope glycoprotein GP160; viral membrane fusion, HIV-1, envelope protein, neutra antibodies, AIDS, apoptosis; HET: JEF; 1.65A {Human immunodeficiency virus type 1 lwisolate} PDB: 3h01_A 3h00_A 1fav_C* 4g6f_P 2pv6_A 3mnw_P 3mnz_P
Probab=24.40 E-value=1e+02 Score=20.60 Aligned_cols=19 Identities=11% Similarity=0.422 Sum_probs=13.9
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 028694 173 QQKEMTRDQAVKDLEDLER 191 (205)
Q Consensus 173 q~k~~~reqa~kdLe~l~~ 191 (205)
.+-++.+||.+|||.+|.+
T Consensus 18 e~sq~qqekNe~~Ll~Ld~ 36 (54)
T 3gwo_A 18 EESQNQQEKNEQELLELDK 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhh
Confidence 3445567888999988875
No 46
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.34 E-value=1.1e+02 Score=21.12 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+..+++..+..++|++.++.|+..+..
T Consensus 45 ~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 45 QERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777888888888877654
No 47
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=22.84 E-value=59 Score=31.00 Aligned_cols=27 Identities=37% Similarity=0.348 Sum_probs=22.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~ 202 (205)
+.+.++|+||||.--|.||-||+-...
T Consensus 349 y~~vkkaqkdlekslrkrehlekev~k 375 (569)
T 4dvz_A 349 YDEVKKAQKDLEKSLRKREHLEKEVEK 375 (569)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999976543
No 48
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.70 E-value=32 Score=23.68 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 028694 138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK 175 (205)
Q Consensus 138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k 175 (205)
+.++...+++..|++. ++.+++=+|++||.|..+
T Consensus 10 WiIi~svl~GLLLL~L----ii~~LwK~GFFKR~~~~~ 43 (54)
T 2l8s_A 10 WVILLSAFAGLLLLML----LILALWKIGFFKRPLKKK 43 (54)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHcCcccCCCcch
Confidence 4455555555555542 345667789999877544
No 49
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.35 E-value=1.8e+02 Score=19.30 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 028694 184 KDLEDLERRREELE 197 (205)
Q Consensus 184 kdLe~l~~rreele 197 (205)
.-+++||.+-++|+
T Consensus 22 ~~~~~LE~~v~~L~ 35 (55)
T 1dh3_A 22 EYVKSLENRVAVLE 35 (55)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 50
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.26 E-value=1.4e+02 Score=24.48 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 168 IKRARQQKEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 168 lKr~rq~k~~~reqa~kdLe~l~~rreele~lL 200 (205)
+|+.+..-....++.....++|++++++|+..+
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i 79 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQI 79 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555545556666777777777777777654
No 51
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=22.06 E-value=2.4e+02 Score=25.22 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhhccCccc
Q 028694 115 RGMLQIFVAVMTRAFPDYSA 134 (205)
Q Consensus 115 RG~lqiFVgvmt~~~p~~~~ 134 (205)
-.++..++-.-|..|-|...
T Consensus 54 ~~~y~~~~t~tTvGygd~~p 73 (565)
T 4gx0_A 54 AGIYWTITVMTTLGFGDITF 73 (565)
T ss_dssp HHHHHHHHHHTTCCCCSSCC
T ss_pred hhhheeeeeeeeecCCCcCC
Confidence 35666777777777876544
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.92 E-value=1.7e+02 Score=22.79 Aligned_cols=22 Identities=9% Similarity=0.368 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028694 179 RDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL 200 (205)
-+.+.|++++|.++-.+|+..+
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444443
No 53
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.72 E-value=88 Score=18.65 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028694 182 AVKDLEDLERRREELEQLL 200 (205)
Q Consensus 182 a~kdLe~l~~rreele~lL 200 (205)
.-|+||+|..|-..|.+-|
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3577888777666555443
No 54
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=21.32 E-value=13 Score=24.68 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 028694 181 QAVKDLEDLERRREELEQLLVA 202 (205)
Q Consensus 181 qa~kdLe~l~~rreele~lL~~ 202 (205)
|++.||||.+.+-|-+|+.+..
T Consensus 3 KlQrELeEa~Erae~ae~~vnk 24 (45)
T 3zwh_Q 3 KLQRELEDATETADAMNREVSS 24 (45)
T ss_dssp SSSSHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776654
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.29 E-value=1.6e+02 Score=26.27 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 028694 183 VKDLEDLER 191 (205)
Q Consensus 183 ~kdLe~l~~ 191 (205)
+++.+++++
T Consensus 543 ~~~~~~le~ 551 (597)
T 3oja_B 543 EQENIALEK 551 (597)
T ss_dssp HHHHHHHHH
T ss_pred HhhhHHHHH
Confidence 344444444
No 56
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.77 E-value=1.6e+02 Score=20.06 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028694 180 DQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 180 eqa~kdLe~l~~rreele~lL~ 201 (205)
.+-+|+.|.|.|+||+=+.+|.
T Consensus 9 LRLErEIE~Lqrqke~~~~~L~ 30 (51)
T 2lw9_A 9 LRLEKEIEDLQRMKEQQELSLT 30 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888899999888777664
No 57
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.33 E-value=1.2e+02 Score=21.76 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+..+++..++.++|++.++.|+..+..+
T Consensus 80 ~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 107 (108)
T 2vz4_A 80 RRQHELLSARIGKLQKMAAAVEQAMEAR 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556788888888888888877543
Done!