Query 028694
Match_columns 205
No_of_seqs 36 out of 38
Neff 3.5
Searched_HMMs 13730
Date Tue Mar 26 02:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lrza1 a.2.7.4 (A:245-309) Me 23.4 67 0.0049 20.8 4.8 28 176-203 36-63 (65)
2 d1q06a_ a.6.1.3 (A:) Transcrip 18.9 1.1E+02 0.0078 20.7 5.5 23 179-201 88-110 (127)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 18.7 81 0.0059 21.1 4.7 27 175-201 6-32 (107)
4 d1x75a1 e.11.1.1 (A:363-494) D 17.4 62 0.0046 23.2 4.0 26 176-201 106-131 (132)
5 d3bzka3 a.294.1.1 (A:1-324) Tr 15.5 85 0.0062 25.2 4.7 33 171-203 42-84 (324)
6 d1j8ca_ d.15.1.1 (A:) Ubiquiti 15.5 81 0.0059 20.9 4.0 9 1-9 1-9 (103)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 14.4 84 0.0061 23.3 4.1 10 158-167 421-430 (447)
8 d2jf2a1 b.81.1.1 (A:1-262) UDP 13.9 25 0.0018 27.2 0.9 26 175-200 225-250 (262)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 13.3 1.7E+02 0.013 19.0 11.5 22 114-135 42-63 (103)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 13.2 1.3E+02 0.0091 18.5 4.2 24 178-201 5-28 (66)
No 1
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=23.42 E-value=67 Score=20.80 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~~~ 203 (205)
.+.+.+-.+.++..++|.+|-+.+...|
T Consensus 36 ~nk~~el~~Q~~s~~~ki~Ea~~li~k~ 63 (65)
T d1lrza1 36 HNKRDNLQQQLDANEQKIEEGKRLQEEH 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555555666666655555443
No 2
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=18.89 E-value=1.1e+02 Score=20.65 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028694 179 RDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 179 reqa~kdLe~l~~rreele~lL~ 201 (205)
.++.++.++++++.+++|+.+..
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~l~~ 110 (127)
T d1q06a_ 88 VAEIERHIEELQSMRDQLLALAN 110 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777654
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.71 E-value=81 Score=21.14 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 175 KEMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 175 k~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
+...-++.++++..+..++.+||..+.
T Consensus 6 ~~~~~q~lq~el~~~~~q~~~le~q~~ 32 (107)
T d1fxka_ 6 QLAQFQQLQQQAQAISVQKQTVEMQIN 32 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555544443
No 4
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=17.39 E-value=62 Score=23.20 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 176 EMTRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 176 ~~~reqa~kdLe~l~~rreele~lL~ 201 (205)
.-++++-.+|.++|.++..+|+.+|.
T Consensus 106 ~LE~~kl~~E~~eL~~~I~~l~~IL~ 131 (132)
T d1x75a1 106 GLEHEKLLDEYKELLDQIAELLRILG 131 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999999885
No 5
>d3bzka3 a.294.1.1 (A:1-324) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.50 E-value=85 Score=25.18 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=23.8
Q ss_pred HHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694 171 ARQQKEMT----------RDQAVKDLEDLERRREELEQLLVAE 203 (205)
Q Consensus 171 ~rq~k~~~----------reqa~kdLe~l~~rreele~lL~~~ 203 (205)
+||.|+.+ =++.-++|.+|++||+.+-+.+...
T Consensus 42 ARYRKE~tg~Lde~~lr~i~~~~~~~~~L~~rk~~il~~i~~~ 84 (324)
T d3bzka3 42 ARYRKEVTGSLDDTQLRMLEERLRYLRELEERRGAILASIEEQ 84 (324)
T ss_dssp HHHCHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhcchhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777655 3455678888999999988876543
No 6
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.49 E-value=81 Score=20.90 Aligned_cols=9 Identities=67% Similarity=0.981 Sum_probs=6.5
Q ss_pred CCCCccccC
Q 028694 1 MARNGERVG 9 (205)
Q Consensus 1 m~~~~~~~~ 9 (205)
||.+++...
T Consensus 1 m~~~~~ss~ 9 (103)
T d1j8ca_ 1 MAENGESSG 9 (103)
T ss_dssp CCCSCCCCC
T ss_pred CCccCccCC
Confidence 788887754
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.38 E-value=84 Score=23.28 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=4.0
Q ss_pred HHHHHHhHHH
Q 028694 158 VISGILCIGC 167 (205)
Q Consensus 158 vl~GlLC~g~ 167 (205)
++..+++.-.
T Consensus 421 ~~~~~~~~~~ 430 (447)
T d1pw4a_ 421 ILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 8
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}
Probab=13.89 E-value=25 Score=27.16 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=15.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 028694 175 KEMTRDQAVKDLEDLERRREELEQLL 200 (205)
Q Consensus 175 k~~~reqa~kdLe~l~~rreele~lL 200 (205)
+....+|+.++|+++++.-+|++.++
T Consensus 225 ~~~~l~~~~~~l~~~~~~~~~v~~~i 250 (262)
T d2jf2a1 225 SGKTLDEVKPEIAELAETYPEVKAFT 250 (262)
T ss_dssp SCCCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred cCCCHHHHHHHHHhhccCCHHHHHHH
Confidence 34445666677776666655555544
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.26 E-value=1.7e+02 Score=18.98 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhccCcccc
Q 028694 114 ARGMLQIFVAVMTRAFPDYSAK 135 (205)
Q Consensus 114 ~RG~lqiFVgvmt~~~p~~~~~ 135 (205)
...+...++-..|..|-|....
T Consensus 42 ~~aly~~~vT~tTvGYGDi~P~ 63 (103)
T d1r3jc_ 42 PRALWWSVETATTVGYGDLYPV 63 (103)
T ss_dssp HHHHHHHHHHHTTCCCSSSCCC
T ss_pred hhhhhhheeeecccccCccccC
Confidence 3678889999999999886543
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.22 E-value=1.3e+02 Score=18.53 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 028694 178 TRDQAVKDLEDLERRREELEQLLV 201 (205)
Q Consensus 178 ~reqa~kdLe~l~~rreele~lL~ 201 (205)
++++..|+|+.+++.-+-++.-|.
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL~ 28 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKLA 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 444555566665555555555544
Done!