Query 028695
Match_columns 205
No_of_seqs 205 out of 1320
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 02:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-51 3.8E-56 346.0 12.2 150 7-156 23-183 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.9E-50 6.6E-55 332.1 9.7 157 15-182 4-171 (176)
3 3h16_A TIR protein; bacteria T 100.0 3.6E-35 1.2E-39 234.6 6.6 112 14-127 15-126 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3.6E-30 1.2E-34 205.1 3.3 126 13-141 4-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 7.7E-27 2.6E-31 185.9 2.3 105 16-122 2-110 (149)
6 1t3g_A X-linked interleukin-1 99.9 1E-25 3.5E-30 181.5 5.0 102 18-119 1-114 (159)
7 2j67_A TOLL like receptor 10; 99.9 7.2E-26 2.4E-30 185.7 4.1 107 14-122 30-140 (178)
8 2js7_A Myeloid differentiation 99.9 8E-26 2.7E-30 182.3 4.0 104 14-119 11-117 (160)
9 3j0a_A TOLL-like receptor 5; m 99.8 2.9E-19 1E-23 173.2 7.2 103 15-119 666-774 (844)
10 1eiw_A Hypothetical protein MT 97.9 8.7E-06 3E-10 61.7 4.1 72 18-114 3-74 (111)
11 3hyn_A Putative signal transdu 96.8 0.0039 1.3E-07 51.1 7.6 103 34-142 32-145 (189)
12 2f62_A Nucleoside 2-deoxyribos 85.4 4.8 0.00016 31.6 8.6 75 33-113 26-104 (161)
13 4fyk_A Deoxyribonucleoside 5'- 78.6 11 0.00039 29.3 8.3 85 21-114 4-101 (152)
14 2khz_A C-MYC-responsive protei 78.5 15 0.00052 28.4 9.2 87 17-113 9-109 (165)
15 2yvq_A Carbamoyl-phosphate syn 69.2 10 0.00035 28.7 5.9 62 22-85 27-106 (143)
16 3ehd_A Uncharacterized conserv 67.8 36 0.0012 26.6 8.9 75 33-113 19-103 (162)
17 2jug_A TUBC protein; docking d 53.7 8 0.00027 26.3 2.4 40 36-75 7-49 (78)
18 1s2d_A Purine trans deoxyribos 53.0 63 0.0022 25.1 8.0 85 21-113 9-115 (167)
19 2d00_A V-type ATP synthase sub 48.8 60 0.002 23.5 6.7 52 40-97 15-66 (109)
20 3hjn_A DTMP kinase, thymidylat 45.4 1.1E+02 0.0036 23.9 8.5 31 23-53 2-34 (197)
21 1byr_A Protein (endonuclease); 38.9 85 0.0029 22.7 6.4 27 59-85 11-37 (155)
22 3aon_B V-type sodium ATPase su 38.0 23 0.00079 26.1 3.0 49 42-97 16-64 (115)
23 2i4r_A V-type ATP synthase sub 32.1 67 0.0023 23.0 4.6 44 41-87 22-65 (102)
24 3dt5_A Uncharacterized protein 31.5 26 0.0009 25.7 2.3 56 84-143 36-100 (135)
25 1sc3_B Interleukin-1 beta conv 31.1 14 0.00048 25.8 0.7 25 23-47 21-45 (88)
26 2i4l_A Proline-tRNA ligase; al 27.9 35 0.0012 30.5 3.0 43 19-61 365-409 (458)
27 1wu7_A Histidyl-tRNA synthetas 27.7 61 0.0021 28.4 4.5 59 19-83 332-391 (434)
28 2ql9_B Caspase-7; cysteine pro 27.1 17 0.00057 25.7 0.6 25 23-47 23-47 (97)
29 1qtn_B Caspase-8; apoptosis, d 26.6 16 0.00055 25.9 0.4 24 24-47 26-49 (95)
30 4h3d_A 3-dehydroquinate dehydr 24.9 57 0.0019 27.0 3.6 67 38-106 103-169 (258)
31 2dko_B Caspase-3; low barrier 24.1 20 0.0007 25.7 0.6 23 25-47 31-53 (103)
32 1evl_A Threonyl-tRNA synthetas 23.7 1.1E+02 0.0037 26.5 5.3 59 19-83 298-357 (401)
33 1pyo_B Caspase-2; apoptosis, c 23.4 22 0.00074 25.6 0.6 25 23-47 27-51 (105)
34 1f8y_A Nucleoside 2-deoxyribos 22.4 95 0.0032 23.8 4.2 86 21-114 5-113 (157)
35 1nj1_A PROR, proline-tRNA synt 20.8 52 0.0018 30.0 2.7 44 19-62 314-361 (501)
36 1bax_A M-PMV MA, M-PMV matrix 20.5 54 0.0018 23.6 2.2 18 33-50 9-26 (94)
37 1u3d_A Cryptochrome 1 apoprote 20.1 2.4E+02 0.0083 25.3 7.1 92 37-138 68-166 (509)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-51 Score=345.95 Aligned_cols=150 Identities=41% Similarity=0.744 Sum_probs=131.5
Q ss_pred CCCCCCCCCCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCc
Q 028695 7 SSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (205)
Q Consensus 7 ~~sssss~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~ 86 (205)
+|+++|++.+.++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||+
T Consensus 23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa 102 (204)
T 3ozi_A 23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA 102 (204)
T ss_dssp -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence 35556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcccCCCCeEEEEEeecCccccccccC---cch--------HHHHHHHHHHHHHhhcccceeecCC
Q 028695 87 SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDF--------ERKVLKWRAALTTVASLAGWHLQDR 155 (205)
Q Consensus 87 ~S~wCl~EL~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g---~~f--------~e~v~~Wr~AL~~v~~~~G~~~~~~ 155 (205)
+|.||++||++|++|+.+.++++||||||+|+|++||+|+| +.| .+++++||.||++||+++||++.++
T Consensus 103 ~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~ 182 (204)
T 3ozi_A 103 DSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKN 182 (204)
T ss_dssp GCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred cCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCC
Confidence 99999999999999943357899999999999999999999 333 5789999999999999999999987
Q ss_pred c
Q 028695 156 F 156 (205)
Q Consensus 156 ~ 156 (205)
+
T Consensus 183 ~ 183 (204)
T 3ozi_A 183 D 183 (204)
T ss_dssp S
T ss_pred C
Confidence 4
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-50 Score=332.06 Aligned_cols=157 Identities=45% Similarity=0.724 Sum_probs=125.5
Q ss_pred CCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHH
Q 028695 15 ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDE 94 (205)
Q Consensus 15 ~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~E 94 (205)
+.+++|||||||||+|+|++|++||+++|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCeEEEEEeecCccccccccC---cch--------HHHHHHHHHHHHHhhcccceeecCCcchhHHHH
Q 028695 95 LAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG---EDF--------ERKVLKWRAALTTVASLAGWHLQDRFFPLIYLL 163 (205)
Q Consensus 95 L~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g---~~f--------~e~v~~Wr~AL~~v~~~~G~~~~~~~~~~~~~~ 163 (205)
|++|++| .+.++++||||||+|+|++||+|+| +.| .+++++||.||++||+++||++.+.
T Consensus 84 L~~i~~~-~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~~~-------- 154 (176)
T 3jrn_A 84 LVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDD-------- 154 (176)
T ss_dssp HHHHHHH-HHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECCSC--------
T ss_pred HHHHHhh-hccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecCCC--------
Confidence 9999999 7888999999999999999999999 444 5789999999999999999999543
Q ss_pred hHhhHhhhhhhhhhcCCCC
Q 028695 164 LFNYLFTLIIFCLFSGDVS 182 (205)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~ 182 (205)
+...+++|+..+++.+.
T Consensus 155 --e~~~i~~Iv~~v~~~l~ 171 (176)
T 3jrn_A 155 --DSKLVDKIANEISNKKT 171 (176)
T ss_dssp --HHHHHHHHHHHHHTTCC
T ss_pred --HHHHHHHHHHHHHHHhc
Confidence 33445555555555443
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=3.6e-35 Score=234.59 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=105.3
Q ss_pred CCCCceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHH
Q 028695 14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLD 93 (205)
Q Consensus 14 ~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~ 93 (205)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 46788999999999999 66899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCeEEEEEeecCccccccccC
Q 028695 94 ELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKG 127 (205)
Q Consensus 94 EL~~i~~~~~~~~~~~ViPIFy~v~PsdVr~q~g 127 (205)
||..+++| ...+++.||||||+|+|++|++|.|
T Consensus 94 El~~~~~~-~~~~~~~iiPV~~~v~p~~v~~~~~ 126 (154)
T 3h16_A 94 ELDGLFQL-ESSGRSRILPIWHKVSKDEVASFSP 126 (154)
T ss_dssp HHHHHTCC-CTTSCCCEEEEEESCCTGGGTTTCC
T ss_pred HHHHHHHH-HhcCCCEEEEEEecCCHHHHhhCCc
Confidence 99999998 7777889999999999999999998
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=3.6e-30 Score=205.05 Aligned_cols=126 Identities=19% Similarity=0.333 Sum_probs=92.5
Q ss_pred CCCCCceeeEEEecccccCCcchHHHHHHHHHc--CCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChh
Q 028695 13 HQILQSKYDVFLSFRGEDTRNNFTDNLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW 90 (205)
Q Consensus 13 s~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~--~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~w 90 (205)
|+...+.|||||||+++|+ .||.+|+.+|++ .|+++|+|++|+.+|+.+.++|.+||++||++|+|+|+||++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 3556789999999999996 489999999998 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCeEEEEEeecCcccc----ccccC-------cch---HHHHHHHHHHH
Q 028695 91 CLDELAKIVECGNKRKDRKVFAVFYGVDPADV----RKQKG-------EDF---ERKVLKWRAAL 141 (205)
Q Consensus 91 Cl~EL~~i~~~~~~~~~~~ViPIFy~v~PsdV----r~q~g-------~~f---~e~v~~Wr~AL 141 (205)
|+.|+..++++ ...+..+||||||+|+++++ +.... +.| .+.|.+|++||
T Consensus 82 c~~El~~al~~-~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTE-APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHT-SSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-HhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99999999998 42333478899999986654 44443 344 67889998875
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.92 E-value=7.7e-27 Score=185.91 Aligned_cols=105 Identities=19% Similarity=0.301 Sum_probs=93.9
Q ss_pred CCceeeEEEecccccCCcchHHH-HHHHHHcC--CeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHH
Q 028695 16 LQSKYDVFLSFRGEDTRNNFTDN-LHTALIRN--GFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL 92 (205)
Q Consensus 16 ~~~~yDVFISfr~~D~r~~Fv~~-L~~aL~~~--Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl 92 (205)
.++.|||||||+++|+ .||.+ |+.+|+++ |+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999996 79986 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCeEEEEEee-cCcccc
Q 028695 93 DELAKIVECGNKRKDRKVFAVFYG-VDPADV 122 (205)
Q Consensus 93 ~EL~~i~~~~~~~~~~~ViPIFy~-v~PsdV 122 (205)
.|+..|+++..+.+++.||||||+ +++.++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 999999864356677889999995 555444
No 6
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.91 E-value=1e-25 Score=181.49 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=91.6
Q ss_pred ceeeEEEecccccC---------CcchHHHHHH-HHH-cCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCc
Q 028695 18 SKYDVFLSFRGEDT---------RNNFTDNLHT-ALI-RNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (205)
Q Consensus 18 ~~yDVFISfr~~D~---------r~~Fv~~L~~-aL~-~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~ 86 (205)
+.|||||||+++|+ ++.||.+|.. .|+ +.|+++|+|++|+.+|+.+.++|.+||++||.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679988776 699 799999999999999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHhcccCCCCeEEEEEeecCc
Q 028695 87 -SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDP 119 (205)
Q Consensus 87 -~S~wCl~EL~~i~~~~~~~~~~~ViPIFy~v~P 119 (205)
.|.||+.|+..+++++.+.+++.||||+|+-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 999999999999988557778899999997444
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.91 E-value=7.2e-26 Score=185.74 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=90.0
Q ss_pred CCCCceeeEEEecccccCCcchHH-HHHHHHHc--CCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChh
Q 028695 14 QILQSKYDVFLSFRGEDTRNNFTD-NLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW 90 (205)
Q Consensus 14 ~~~~~~yDVFISfr~~D~r~~Fv~-~L~~aL~~--~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~w 90 (205)
...++.|||||||+++|+ .||. +|..+|++ +|+++|+|++|+.+|+.+.++|.+||++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999995 7997 49999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCeEEEEEee-cCcccc
Q 028695 91 CLDELAKIVECGNKRKDRKVFAVFYG-VDPADV 122 (205)
Q Consensus 91 Cl~EL~~i~~~~~~~~~~~ViPIFy~-v~PsdV 122 (205)
|+.|+..|+++..+.++++||||||+ +.+.++
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l 140 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCI 140 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence 99999999975456677899999996 444444
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.91 E-value=8e-26 Score=182.29 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=93.3
Q ss_pred CCCCceeeEEEecccccCCcchHHHHHHHHHcC--CeEEEEcCCCCCCCccchHHHHHHHH-hcCceEEEeccCCcCChh
Q 028695 14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRN--GFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSKNYASSPW 90 (205)
Q Consensus 14 ~~~~~~yDVFISfr~~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~dl~~G~~i~~~i~~aI~-~Sri~IvV~S~~y~~S~w 90 (205)
...++.|||||||+++| ..||.+|..+|+++ |+++|+|++|+.+|+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34467899999999999 47999999999985 69999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCeEEEEEeecCc
Q 028695 91 CLDELAKIVECGNKRKDRKVFAVFYGVDP 119 (205)
Q Consensus 91 Cl~EL~~i~~~~~~~~~~~ViPIFy~v~P 119 (205)
|+.|+..|+++..+.++++||||||+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999988445566799999997543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=2.9e-19 Score=173.17 Aligned_cols=103 Identities=19% Similarity=0.314 Sum_probs=93.8
Q ss_pred CCCceeeEEEecccccCCcchH-HHHHHHHHc-----CCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCC
Q 028695 15 ILQSKYDVFLSFRGEDTRNNFT-DNLHTALIR-----NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS 88 (205)
Q Consensus 15 ~~~~~yDVFISfr~~D~r~~Fv-~~L~~aL~~-----~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S 88 (205)
...+.|||||||+++|. .|| .+|...|++ .|+++|++++|+.||+.+.++|.+||++||.+|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35679999999999995 688 789999985 5899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcccCCCCeEEEEEeecCc
Q 028695 89 PWCLDELAKIVECGNKRKDRKVFAVFYGVDP 119 (205)
Q Consensus 89 ~wCl~EL~~i~~~~~~~~~~~ViPIFy~v~P 119 (205)
.||..|+..++.+..++++++||||||+..|
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999999987567788899999997444
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.90 E-value=8.7e-06 Score=61.66 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=53.9
Q ss_pred ceeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHH
Q 028695 18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK 97 (205)
Q Consensus 18 ~~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~ 97 (205)
.+|.|||||..+| . .+.|...|.+.|+. |.| +.|+.|.+.||+.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4799999999998 3 33444444444553 223 56889999999999999999999999988
Q ss_pred HHHhcccCCCCeEEEEE
Q 028695 98 IVECGNKRKDRKVFAVF 114 (205)
Q Consensus 98 i~~~~~~~~~~~ViPIF 114 (205)
+.+. +..|+-|.
T Consensus 63 A~~~-----gkpIigV~ 74 (111)
T 1eiw_A 63 ARKS-----SKPIITVR 74 (111)
T ss_dssp HTTT-----TCCEEEEC
T ss_pred HHHc-----CCCEEEEE
Confidence 7654 66777665
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.79 E-value=0.0039 Score=51.09 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=71.5
Q ss_pred chHHHHHHHHHcCCeEEEEcCCCCC----C----CccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHHHH-Hhccc
Q 028695 34 NFTDNLHTALIRNGFIAFKDDETLD----R----GNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIV-ECGNK 104 (205)
Q Consensus 34 ~Fv~~L~~aL~~~Gi~vf~D~~dl~----~----G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~-~~~~~ 104 (205)
.+...|..--.+..+-.|.|-++.. - -+.|...|.+.|..|+..|+++|++...|.|...|+..++ ++
T Consensus 32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~--- 108 (189)
T 3hyn_A 32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTK--- 108 (189)
T ss_dssp HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhc---
Confidence 4556676666666666677765442 2 2357788899999999999999999999999999999998 55
Q ss_pred CCCCeEEEEEeecC-ccccccccCcch-HHHHHHHHHHHH
Q 028695 105 RKDRKVFAVFYGVD-PADVRKQKGEDF-ERKVLKWRAALT 142 (205)
Q Consensus 105 ~~~~~ViPIFy~v~-PsdVr~q~g~~f-~e~v~~Wr~AL~ 142 (205)
+..||-|.-+-+ .+++..-.|. | .+.-..|.+++.
T Consensus 109 --~~PII~Vy~~~~~~~~i~~~~g~-~~~~~~~~wpk~p~ 145 (189)
T 3hyn_A 109 --GLPVIVIYPDYDKKSDIVDSNGN-FKKQIKDLWDKLPA 145 (189)
T ss_dssp --CCCEEEEETTCCSGGGTBCTTSC-BCHHHHHHHHTCHH
T ss_pred --CCcEEEEECCccccchhhhcccc-chhhHhhcCCcchh
Confidence 778888875533 3344443331 2 233446775443
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=85.38 E-value=4.8 Score=31.58 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=54.2
Q ss_pred cchHHHHHHHHHcCCeEEEEcCCC-CCCCccchHHHHHHHHhcCceEEEecc---CCcCChhHHHHHHHHHHhcccCCCC
Q 028695 33 NNFTDNLHTALIRNGFIAFKDDET-LDRGNEISSELSKAIEESNVSIVILSK---NYASSPWCLDELAKIVECGNKRKDR 108 (205)
Q Consensus 33 ~~Fv~~L~~aL~~~Gi~vf~D~~d-l~~G~~i~~~i~~aI~~Sri~IvV~S~---~y~~S~wCl~EL~~i~~~~~~~~~~ 108 (205)
..+...+.+.|++.|+.+|.-.++ ......|...-.++|++|++.|.+++| .+. +.-...|+-.+... ++
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~-D~GTafEiGyA~Al-----gK 99 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEP-DCGTAFEVGCAAAL-----NK 99 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSC-CHHHHHHHHHHHHT-----TC
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCC-CCcHHHHHHHHHHC-----CC
Confidence 368899999999999998874321 123344555557899999999999985 333 44578899998766 56
Q ss_pred eEEEE
Q 028695 109 KVFAV 113 (205)
Q Consensus 109 ~ViPI 113 (205)
.|+-+
T Consensus 100 PVi~l 104 (161)
T 2f62_A 100 MVLTF 104 (161)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 13
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=78.57 E-value=11 Score=29.32 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=54.6
Q ss_pred eEEEe--cccccCCcchHHHHHHHHHcCCeEEEE---cCCCC-CCCc-------cchHHHHHHHHhcCceEEEeccCCcC
Q 028695 21 DVFLS--FRGEDTRNNFTDNLHTALIRNGFIAFK---DDETL-DRGN-------EISSELSKAIEESNVSIVILSKNYAS 87 (205)
Q Consensus 21 DVFIS--fr~~D~r~~Fv~~L~~aL~~~Gi~vf~---D~~dl-~~G~-------~i~~~i~~aI~~Sri~IvV~S~~y~~ 87 (205)
.|||+ +++.+....+...+.+.|++.| .|+- .+.++ ..|+ .+...-.++|++|++.|.+++ .-
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 4443333467799999999999 6653 21112 1222 245555778999999999988 44
Q ss_pred ChhHHHHHHHHHHhcccCCCCeEEEEE
Q 028695 88 SPWCLDELAKIVECGNKRKDRKVFAVF 114 (205)
Q Consensus 88 S~wCl~EL~~i~~~~~~~~~~~ViPIF 114 (205)
|.=..-|+..+... ++.|+-++
T Consensus 80 d~Gt~~EiG~A~al-----gkPV~~l~ 101 (152)
T 4fyk_A 80 SLGVGYELGRAVAL-----GKPILCLF 101 (152)
T ss_dssp CHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred CCCHHHHHHHHHHc-----CCeEEEEE
Confidence 66678899998776 55665544
No 14
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=78.50 E-value=15 Score=28.41 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=55.9
Q ss_pred CceeeEEEec--ccccCCcchHHHHHHHHHcCCeEEEEcCCCC-----CCCc-------cchHHHHHHHHhcCceEEEec
Q 028695 17 QSKYDVFLSF--RGEDTRNNFTDNLHTALIRNGFIAFKDDETL-----DRGN-------EISSELSKAIEESNVSIVILS 82 (205)
Q Consensus 17 ~~~yDVFISf--r~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl-----~~G~-------~i~~~i~~aI~~Sri~IvV~S 82 (205)
+.+..|||+= .+..........+.+.|++.| .++.+. .. ..|. .+...-.+.|++|++.|+++.
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~-~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~ 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEH-VADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGG-TTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-Cccccc-ccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC
Confidence 3346799983 221111224588999999999 776432 11 1221 123333578999999999997
Q ss_pred cCCcCChhHHHHHHHHHHhcccCCCCeEEEE
Q 028695 83 KNYASSPWCLDELAKIVECGNKRKDRKVFAV 113 (205)
Q Consensus 83 ~~y~~S~wCl~EL~~i~~~~~~~~~~~ViPI 113 (205)
..+.-+..|+..+... ++.|+-+
T Consensus 87 ---~~d~Gt~~EiGyA~al-----gKPVi~l 109 (165)
T 2khz_A 87 ---QPSLGVGYELGRAVAL-----GKPILCL 109 (165)
T ss_dssp ---SCCHHHHHHHHHHHHT-----CSSEEEE
T ss_pred ---CCCCCHHHHHHHHHHC-----CCEEEEE
Confidence 4466788999998776 6666654
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=69.22 E-value=10 Score=28.71 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=38.3
Q ss_pred EEEecccccCCcchHHHHHHHHHcCCeEEEEcC--------C-----CCCC---C-c-cchHHHHHHHHhcCceEEEecc
Q 028695 22 VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDD--------E-----TLDR---G-N-EISSELSKAIEESNVSIVILSK 83 (205)
Q Consensus 22 VFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~--------~-----dl~~---G-~-~i~~~i~~aI~~Sri~IvV~S~ 83 (205)
||||.+..| +.-+-.+.+.|.+.|++++--. . .+.. | + .-.++|.+.|++-++.+||..+
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998776 3345567778888899877321 0 1111 1 1 0004577777777777777777
Q ss_pred CC
Q 028695 84 NY 85 (205)
Q Consensus 84 ~y 85 (205)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 16
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=67.78 E-value=36 Score=26.57 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHcC--CeEEEEcCCCC----CCCc----cchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHHHHHhc
Q 028695 33 NNFTDNLHTALIRN--GFIAFKDDETL----DRGN----EISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECG 102 (205)
Q Consensus 33 ~~Fv~~L~~aL~~~--Gi~vf~D~~dl----~~G~----~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~ 102 (205)
..+...+.++|+++ |+.+|.--++- .++. .|...-.++|++|++.|.++... ..+..+.-|+..+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg~-~~D~Gt~~EiG~A~a~- 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDGP-TIDAGVASEIGVAYAK- 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCSS-SCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCC-CCCCCHHHHHHHHHHC-
Confidence 35788899999875 99998642221 1222 34445567899999999999533 3567788899998876
Q ss_pred ccCCCCeEEEE
Q 028695 103 NKRKDRKVFAV 113 (205)
Q Consensus 103 ~~~~~~~ViPI 113 (205)
++.|+.+
T Consensus 97 ----gkPVi~~ 103 (162)
T 3ehd_A 97 ----GIPVVAL 103 (162)
T ss_dssp ----TCCEEEE
T ss_pred ----CCEEEEE
Confidence 5566655
No 17
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=53.67 E-value=8 Score=26.30 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCC---CCccchHHHHHHHHhcC
Q 028695 36 TDNLHTALIRNGFIAFKDDETLD---RGNEISSELSKAIEESN 75 (205)
Q Consensus 36 v~~L~~aL~~~Gi~vf~D~~dl~---~G~~i~~~i~~aI~~Sr 75 (205)
+..|...|.++||..|.|.+.+. |-..+++++...+.+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34677889999999999987663 44467778777776543
No 18
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=53.05 E-value=63 Score=25.09 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=57.3
Q ss_pred eEEEe---cccccCCcchHHHHHHHHHcC--CeEEEEcCCC-C--------CCC--------ccchHHHHHHHHhcCceE
Q 028695 21 DVFLS---FRGEDTRNNFTDNLHTALIRN--GFIAFKDDET-L--------DRG--------NEISSELSKAIEESNVSI 78 (205)
Q Consensus 21 DVFIS---fr~~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~d-l--------~~G--------~~i~~~i~~aI~~Sri~I 78 (205)
.|||. |+..+ ..+...+.+.|++. |+.+|.-.++ . ..| ..|...=.++|++|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47765 33332 35789999999999 8888864321 1 111 123444567899999999
Q ss_pred EEeccCCcCChhHHHHHHHHHHhcccCCCCeEEEE
Q 028695 79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAV 113 (205)
Q Consensus 79 vV~S~~y~~S~wCl~EL~~i~~~~~~~~~~~ViPI 113 (205)
.++...-.+ .=..-|+-.+... ++.|+-+
T Consensus 87 A~ldg~~~D-~GTa~EiGyA~al-----gKPVv~l 115 (167)
T 1s2d_A 87 FLYDMDQLD-DGSAFXIGFMRAM-----HKPVILV 115 (167)
T ss_dssp EEEESSSCC-HHHHHHHHHHHHT-----TCCEEEE
T ss_pred EECCCCCCC-CCceeehhhHhhC-----CCeEEEE
Confidence 999876554 4577899988766 5666655
No 19
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=48.84 E-value=60 Score=23.46 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHH
Q 028695 40 HTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK 97 (205)
Q Consensus 40 ~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~ 97 (205)
...+.-.|+.+|.-. ..+++...+.+.+++-++.|++++++.+. .+.+++..
T Consensus 15 v~GFrLaGi~~~~v~----~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~ 66 (109)
T 2d00_A 15 AQGFRLAGLEGYGAS----SAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVER 66 (109)
T ss_dssp HHHHHHTTSEEEECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHH
T ss_pred HHHHHHcCCeEEEeC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHH
Confidence 345666799888542 23556666777777789999999999987 24444443
No 20
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=45.44 E-value=1.1e+02 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.2
Q ss_pred EEecccccCC--cchHHHHHHHHHcCCeEEEEc
Q 028695 23 FLSFRGEDTR--NNFTDNLHTALIRNGFIAFKD 53 (205)
Q Consensus 23 FISfr~~D~r--~~Fv~~L~~aL~~~Gi~vf~D 53 (205)
||.+-|-|.. .+-+..|.+.|+.+|+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 7888777742 457789999999999987654
No 21
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=38.91 E-value=85 Score=22.67 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=19.4
Q ss_pred CCccchHHHHHHHHhcCceEEEeccCC
Q 028695 59 RGNEISSELSKAIEESNVSIVILSKNY 85 (205)
Q Consensus 59 ~G~~i~~~i~~aI~~Sri~IvV~S~~y 85 (205)
|++.+.+.+.++|++++..|.+.++.+
T Consensus 11 p~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 11 PEGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp TTTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 345566777788888888887777655
No 22
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=37.98 E-value=23 Score=26.09 Aligned_cols=49 Identities=10% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHH
Q 028695 42 ALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK 97 (205)
Q Consensus 42 aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~ 97 (205)
.+.-.|+.+|.-. .-+++.+.+.+.+++ ++.|++++++.+.. +.+++..
T Consensus 16 GFrLaGie~~~v~----~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 16 PFRLFGFDVQHGT----TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp GGGGGTCEEECCC----SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHcCCeEEEeC----CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 4456799888542 235566667777777 99999999998762 3344444
No 23
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=32.10 E-value=67 Score=23.02 Aligned_cols=44 Identities=16% Similarity=0.377 Sum_probs=31.0
Q ss_pred HHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcC
Q 028695 41 TALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYAS 87 (205)
Q Consensus 41 ~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~ 87 (205)
-.+.-.|+..+.+. ..-+++.+.+.+.+++.++.|++++++.+.
T Consensus 22 ~GFrLaGi~~~~~~---~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFMLAGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHTTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHcCCCcccCC---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34566788777622 122456666777777789999999999886
No 24
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=31.51 E-value=26 Score=25.65 Aligned_cols=56 Identities=20% Similarity=0.529 Sum_probs=34.9
Q ss_pred CCcCChhHHHHHHHHHHhcccC-CC---CeEEEEEeecCccccccccC-cc--h--HHHHHHHHHHHHH
Q 028695 84 NYASSPWCLDELAKIVECGNKR-KD---RKVFAVFYGVDPADVRKQKG-ED--F--ERKVLKWRAALTT 143 (205)
Q Consensus 84 ~y~~S~wCl~EL~~i~~~~~~~-~~---~~ViPIFy~v~PsdVr~q~g-~~--f--~e~v~~Wr~AL~~ 143 (205)
.|+--.-.-+|+..|+.| ++- -+ .+|+|.-++.....+ .| .+ | .+.+++|++||.-
T Consensus 36 syvytaqtedeietiitc-rrylagnnllrvlpmhfkfkadki---agsanwtfyakedfeqwkealdv 100 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITC-RRYLAGNNLLRVLPMHFKFKADKI---AGSANWTFYAKEDFEQWKEALDV 100 (135)
T ss_dssp SSCCCTTHHHHHHHHHHT-TGGGSCHHHHHHCCSCCGGGEECC---TTCSSEEESSHHHHHHHHHHHHH
T ss_pred hHheeccchhHHHHHHHH-HHHhcccchhhhcchheeeecchh---ccccceeEEeHhhHHHHHHHHHH
Confidence 355455678999999999 542 23 357776554333222 23 22 3 6789999999864
No 25
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=31.09 E-value=14 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=18.4
Q ss_pred EEecccccCCcchHHHHHHHHHcCC
Q 028695 23 FLSFRGEDTRNNFTDNLHTALIRNG 47 (205)
Q Consensus 23 FISfr~~D~r~~Fv~~L~~aL~~~G 47 (205)
|.|||+.+..--|+..|++.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4667766656679999999998643
No 26
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=27.95 E-value=35 Score=30.52 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=29.7
Q ss_pred eeeEEEeccc--ccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCc
Q 028695 19 KYDVFLSFRG--EDTRNNFTDNLHTALIRNGFIAFKDDETLDRGN 61 (205)
Q Consensus 19 ~yDVFISfr~--~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~ 61 (205)
.++|+|---+ .+.....+..|+..|.+.|+.|-+|+++-..|.
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~ 409 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGA 409 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHH
Confidence 3678776322 122346789999999999999999986433333
No 27
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=27.72 E-value=61 Score=28.45 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=37.6
Q ss_pred eeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHH-hcCceEEEecc
Q 028695 19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSK 83 (205)
Q Consensus 19 ~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~-~Sri~IvV~S~ 83 (205)
.+||+|..-+++. ...+..|...|.+.|+++-+|.++ ..+...+..|-. +... ++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~~-~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGADF-AVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCSE-EEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCE-EEEECc
Confidence 4789866545543 457789999999999999998753 344444444422 3444 444444
No 28
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=27.09 E-value=17 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=16.7
Q ss_pred EEecccccCCcchHHHHHHHHHcCC
Q 028695 23 FLSFRGEDTRNNFTDNLHTALIRNG 47 (205)
Q Consensus 23 FISfr~~D~r~~Fv~~L~~aL~~~G 47 (205)
|.|||+.+..--|+..|++.|++.|
T Consensus 23 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 23 YYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3455555555568888888887644
No 29
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=26.64 E-value=16 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=14.7
Q ss_pred EecccccCCcchHHHHHHHHHcCC
Q 028695 24 LSFRGEDTRNNFTDNLHTALIRNG 47 (205)
Q Consensus 24 ISfr~~D~r~~Fv~~L~~aL~~~G 47 (205)
.|||+.+..--|+..|++.|++.|
T Consensus 26 ~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 26 VSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHG
T ss_pred EEEecCCCCcHHHHHHHHHHHHhC
Confidence 334444444558888888887543
No 30
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=24.85 E-value=57 Score=27.05 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHHHHHHHhcccCC
Q 028695 38 NLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRK 106 (205)
Q Consensus 38 ~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~ 106 (205)
.|+..+...|.--++|- |+..++.+...+.+..+...+-| |.|-+..+..|-.+||...+..|.+.+
T Consensus 103 ~ll~~~~~~~~~d~iDv-El~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 103 TLNKEISNTGLVDLIDV-ELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHHHTTCCSEEEE-EGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCchhhHH-hhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 34444444554445665 45555555556666556655554 455555556677788888887744433
No 31
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=24.12 E-value=20 Score=25.66 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=14.5
Q ss_pred ecccccCCcchHHHHHHHHHcCC
Q 028695 25 SFRGEDTRNNFTDNLHTALIRNG 47 (205)
Q Consensus 25 Sfr~~D~r~~Fv~~L~~aL~~~G 47 (205)
|||+....--|+..|++.|++.|
T Consensus 31 S~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 31 SWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp CEEETTTEEHHHHHHHHHHHHHT
T ss_pred eEEcCCCCCeeHHHHHHHHHHhC
Confidence 34444444558888888887643
No 32
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=23.74 E-value=1.1e+02 Score=26.55 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=38.4
Q ss_pred eeeEEEecccccCCcchHHHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHH-hcCceEEEecc
Q 028695 19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSK 83 (205)
Q Consensus 19 ~yDVFISfr~~D~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~-~Sri~IvV~S~ 83 (205)
.+||+|---+++ ....+..|+..|.+.|+++-+|+++ ..+...+..|-. +... ++|+.+
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~-~iiiG~ 357 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPY-MLVCGD 357 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSE-EEEECH
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCE-EEEECc
Confidence 478887654544 3467889999999999999998753 345545555433 3444 444444
No 33
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=23.40 E-value=22 Score=25.63 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=16.2
Q ss_pred EEecccccCCcchHHHHHHHHHcCC
Q 028695 23 FLSFRGEDTRNNFTDNLHTALIRNG 47 (205)
Q Consensus 23 FISfr~~D~r~~Fv~~L~~aL~~~G 47 (205)
|.|||+.+..--|+..|++.|++.+
T Consensus 27 ~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 27 TAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHC
Confidence 3445555545568888888887643
No 34
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=22.37 E-value=95 Score=23.77 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=55.0
Q ss_pred eEEEe---cccccCCcchHHHHHHHHHcCCe----EEEEcCCC-C--------CC---C----ccchHHHHHHHHhcCce
Q 028695 21 DVFLS---FRGEDTRNNFTDNLHTALIRNGF----IAFKDDET-L--------DR---G----NEISSELSKAIEESNVS 77 (205)
Q Consensus 21 DVFIS---fr~~D~r~~Fv~~L~~aL~~~Gi----~vf~D~~d-l--------~~---G----~~i~~~i~~aI~~Sri~ 77 (205)
.|||. |+.+. ......+.++|+..|. .+|.-.++ . .. + ..|...=.++|++|++.
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 36665 33332 3578999999999985 56653221 1 11 1 13344456789999999
Q ss_pred EEEeccCCcCChhHHHHHHHHHHhcccCCCCeEEEEE
Q 028695 78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVF 114 (205)
Q Consensus 78 IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~~ViPIF 114 (205)
|.++...-.+ .=..-|+-.+... ++.|+-+.
T Consensus 83 vA~ldg~~~D-~GT~~EiGyA~A~-----gkPVv~~~ 113 (157)
T 1f8y_A 83 LGVYIPDEED-VGLGMELGYALSQ-----GKYVLLVI 113 (157)
T ss_dssp EEECCGGGCC-HHHHHHHHHHHHT-----TCEEEEEE
T ss_pred EEEcCCCCCC-ccHHHHHHHHHHC-----CCeEEEEE
Confidence 9999754443 4577899998766 66665543
No 35
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=20.78 E-value=52 Score=29.96 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=30.8
Q ss_pred eeeEEEecc-c-cc--CCcchHHHHHHHHHcCCeEEEEcCCCCCCCcc
Q 028695 19 KYDVFLSFR-G-ED--TRNNFTDNLHTALIRNGFIAFKDDETLDRGNE 62 (205)
Q Consensus 19 ~yDVFISfr-~-~D--~r~~Fv~~L~~aL~~~Gi~vf~D~~dl~~G~~ 62 (205)
.|+|+|--- + ++ .-...+..|+..|.+.||+|-+|+++-.+|..
T Consensus 314 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k 361 (501)
T 1nj1_A 314 AHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRK 361 (501)
T ss_dssp SCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHH
T ss_pred CceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 478876544 3 21 23467899999999999999999865334443
No 36
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=20.47 E-value=54 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHcCCeEE
Q 028695 33 NNFTDNLHTALIRNGFIA 50 (205)
Q Consensus 33 ~~Fv~~L~~aL~~~Gi~v 50 (205)
..|+..|...|.++||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 369999999999999998
No 37
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=20.15 E-value=2.4e+02 Score=25.32 Aligned_cols=92 Identities=14% Similarity=0.203 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCeEEEEcCCCCCCCccchHHHHHHHHhcCceEEEeccCCcCChhHHHHH-HHHHHhcccCCCCeEEEEEe
Q 028695 37 DNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDEL-AKIVECGNKRKDRKVFAVFY 115 (205)
Q Consensus 37 ~~L~~aL~~~Gi~vf~D~~dl~~G~~i~~~i~~aI~~Sri~IvV~S~~y~~S~wCl~EL-~~i~~~~~~~~~~~ViPIFy 115 (205)
.+|.++|++.|+.+.+-. |....+.|.+.+++-++.-|+++..|.--.+-.++- ...+ +..+..+ =.+-
T Consensus 68 ~~L~~~L~~~G~~L~v~~-----~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l----~~~gi~~-~~~~ 137 (509)
T 1u3d_A 68 AQLDSSLRSLGTCLITKR-----STDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVL----TAQGIAV-RSFN 137 (509)
T ss_dssp HHHHHHHHHTTCCEEEEE-----CSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHH----HTTTCEE-EEEC
T ss_pred HHHHHHHHHCCCeEEEEe-----CCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHH----HHcCcEE-EEEC
Confidence 667788889999887632 223455677778888899999998885433333332 2222 1122222 1221
Q ss_pred e---cCccccccccCc---chHHHHHHHH
Q 028695 116 G---VDPADVRKQKGE---DFERKVLKWR 138 (205)
Q Consensus 116 ~---v~PsdVr~q~g~---~f~e~v~~Wr 138 (205)
+ +.|.+|....|+ .|....++|+
T Consensus 138 ~~~l~~p~~v~~~~g~~~~vftpf~r~~~ 166 (509)
T 1u3d_A 138 ADLLYEPWEVTDELGRPFSMFAAFWERCL 166 (509)
T ss_dssp CSCSSCGGGCCCSSSCCCSSHHHHHHHHH
T ss_pred CCEEEcCCcccCCCCCCchhHHHHHHHHH
Confidence 1 467777766663 3344444444
Done!