Query 028697
Match_columns 205
No_of_seqs 120 out of 2027
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 15:34:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.8 9.8E-22 2.1E-26 156.4 3.7 159 43-203 72-260 (483)
2 KOG2120 SCF ubiquitin ligase, 99.8 1.4E-18 3E-23 133.6 8.5 155 40-196 95-350 (419)
3 KOG4341 F-box protein containi 99.7 6.8E-17 1.5E-21 129.0 4.3 146 57-204 176-339 (483)
4 KOG1947 Leucine rich repeat pr 99.3 5.7E-12 1.2E-16 106.1 6.7 116 78-194 213-331 (482)
5 KOG1947 Leucine rich repeat pr 99.2 1.8E-10 3.9E-15 97.0 11.0 126 78-204 187-314 (482)
6 PF12937 F-box-like: F-box-lik 99.0 4.5E-10 9.8E-15 64.3 3.8 36 43-78 1-36 (47)
7 cd00116 LRR_RI Leucine-rich re 98.8 5E-08 1.1E-12 78.0 11.2 89 103-195 163-261 (319)
8 KOG2120 SCF ubiquitin ligase, 98.8 2E-09 4.3E-14 83.6 2.7 116 78-195 259-374 (419)
9 cd00116 LRR_RI Leucine-rich re 98.8 1E-07 2.2E-12 76.3 10.8 117 79-202 165-294 (319)
10 KOG3864 Uncharacterized conser 98.6 4.2E-08 9E-13 72.2 3.3 86 107-196 103-188 (221)
11 PF00646 F-box: F-box domain; 98.5 4.6E-08 1E-12 56.1 1.9 36 42-77 2-37 (48)
12 smart00256 FBOX A Receptor for 98.4 3.1E-07 6.7E-12 50.6 3.3 32 46-77 1-32 (41)
13 KOG3665 ZYG-1-like serine/thre 98.4 4.8E-07 1E-11 79.5 6.1 67 78-147 121-187 (699)
14 KOG1909 Ran GTPase-activating 98.1 1.7E-05 3.7E-10 63.1 8.1 115 78-196 184-310 (382)
15 KOG3207 Beta-tubulin folding c 98.1 2.1E-06 4.6E-11 70.0 2.7 109 80-194 122-232 (505)
16 KOG3864 Uncharacterized conser 98.0 8.3E-06 1.8E-10 60.3 4.2 104 81-188 103-208 (221)
17 KOG3207 Beta-tubulin folding c 98.0 2.8E-06 6.1E-11 69.3 1.5 88 78-168 145-232 (505)
18 PF14580 LRR_9: Leucine-rich r 97.9 3.6E-06 7.8E-11 61.7 0.2 140 46-195 4-151 (175)
19 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.9E-10 70.6 3.0 66 105-173 122-187 (699)
20 KOG1909 Ran GTPase-activating 97.8 0.00013 2.7E-09 58.3 7.9 113 79-195 157-281 (382)
21 smart00367 LRR_CC Leucine-rich 97.7 5.1E-05 1.1E-09 37.3 3.0 24 157-180 1-24 (26)
22 PLN00113 leucine-rich repeat r 97.4 0.00012 2.6E-09 67.4 3.7 38 156-195 162-199 (968)
23 smart00367 LRR_CC Leucine-rich 97.3 0.00034 7.3E-09 34.3 2.9 24 131-154 1-24 (26)
24 PF14580 LRR_9: Leucine-rich r 97.2 9E-05 2E-09 54.4 0.6 107 80-200 20-127 (175)
25 PLN00113 leucine-rich repeat r 97.2 0.00038 8.2E-09 64.2 4.1 14 102-115 161-174 (968)
26 KOG2982 Uncharacterized conser 97.0 0.00045 9.8E-09 54.4 2.0 106 84-194 50-156 (418)
27 PLN03215 ascorbic acid mannose 96.9 0.0009 2E-08 54.6 3.2 38 41-78 2-40 (373)
28 PLN03210 Resistant to P. syrin 96.8 0.0012 2.7E-08 62.0 3.6 39 156-196 867-905 (1153)
29 COG5238 RNA1 Ran GTPase-activa 96.7 0.012 2.7E-07 46.0 8.3 97 103-203 155-259 (388)
30 PF12799 LRR_4: Leucine Rich r 96.6 0.0027 5.9E-08 35.3 3.0 38 158-200 1-38 (44)
31 KOG2997 F-box protein FBX9 [Ge 96.4 0.0019 4.1E-08 51.0 1.9 38 40-77 104-146 (366)
32 PF13855 LRR_8: Leucine rich r 96.3 8.8E-05 1.9E-09 44.5 -4.6 37 157-195 24-60 (61)
33 PF13516 LRR_6: Leucine Rich r 96.0 0.006 1.3E-07 29.1 1.9 22 158-180 2-23 (24)
34 KOG0618 Serine/threonine phosp 96.0 0.0052 1.1E-07 55.2 2.7 85 102-196 404-488 (1081)
35 PLN03150 hypothetical protein; 95.9 0.0096 2.1E-07 52.5 4.3 116 72-195 403-526 (623)
36 KOG2123 Uncharacterized conser 95.8 0.0087 1.9E-07 47.0 3.1 99 82-190 22-123 (388)
37 PLN03210 Resistant to P. syrin 95.7 0.014 3E-07 55.1 4.4 12 131-142 656-667 (1153)
38 KOG4194 Membrane glycoprotein 95.4 0.0099 2.1E-07 51.2 2.3 62 130-195 363-427 (873)
39 KOG2982 Uncharacterized conser 95.2 0.0053 1.1E-07 48.6 0.0 87 104-195 120-210 (418)
40 PF12799 LRR_4: Leucine Rich r 95.1 0.017 3.7E-07 32.1 2.0 33 133-168 2-34 (44)
41 PF13855 LRR_8: Leucine rich r 95.1 0.00072 1.6E-08 40.4 -4.0 59 105-168 1-59 (61)
42 KOG4194 Membrane glycoprotein 95.1 0.003 6.5E-08 54.2 -1.7 86 103-195 315-403 (873)
43 PF13516 LRR_6: Leucine Rich r 95.0 0.021 4.6E-07 27.1 1.8 22 132-154 2-23 (24)
44 COG5238 RNA1 Ran GTPase-activa 95.0 0.3 6.6E-06 38.5 9.0 115 78-195 91-225 (388)
45 KOG2739 Leucine-rich acidic nu 94.8 0.012 2.7E-07 45.3 1.1 89 103-195 63-154 (260)
46 KOG0281 Beta-TrCP (transducin 94.8 0.02 4.2E-07 46.0 2.1 38 40-77 72-113 (499)
47 KOG2739 Leucine-rich acidic nu 94.7 0.013 2.8E-07 45.2 1.0 89 100-195 38-127 (260)
48 PF13013 F-box-like_2: F-box-l 94.5 0.049 1.1E-06 36.6 3.3 34 42-75 21-56 (109)
49 PLN03150 hypothetical protein; 94.4 0.043 9.2E-07 48.5 3.6 83 106-195 419-501 (623)
50 KOG1259 Nischarin, modulator o 93.9 0.037 8.1E-07 44.0 2.0 36 158-195 374-410 (490)
51 smart00368 LRR_RI Leucine rich 93.3 0.16 3.4E-06 25.1 3.1 24 158-182 2-25 (28)
52 KOG1859 Leucine-rich repeat pr 92.6 0.017 3.7E-07 51.0 -1.8 103 78-195 186-290 (1096)
53 KOG1644 U2-associated snRNP A' 92.3 0.07 1.5E-06 40.0 1.3 107 80-195 43-151 (233)
54 KOG1644 U2-associated snRNP A' 92.2 0.2 4.3E-06 37.6 3.6 81 103-195 40-124 (233)
55 smart00368 LRR_RI Leucine rich 90.5 0.47 1E-05 23.4 2.9 24 132-156 2-25 (28)
56 PRK15387 E3 ubiquitin-protein 90.4 0.4 8.7E-06 43.4 4.3 11 158-168 302-312 (788)
57 KOG1259 Nischarin, modulator o 89.7 0.35 7.7E-06 38.7 3.1 100 81-195 286-385 (490)
58 KOG1859 Leucine-rich repeat pr 89.6 0.084 1.8E-06 46.9 -0.5 83 100-194 182-264 (1096)
59 KOG2123 Uncharacterized conser 89.2 0.11 2.4E-06 40.9 -0.0 80 105-195 19-99 (388)
60 KOG3763 mRNA export factor TAP 88.1 1.2 2.6E-05 38.4 5.3 90 98-190 211-307 (585)
61 PRK15387 E3 ubiquitin-protein 87.7 0.35 7.6E-06 43.8 2.0 11 132-142 302-312 (788)
62 KOG0444 Cytoskeletal regulator 87.0 0.11 2.4E-06 45.5 -1.4 14 182-195 243-256 (1255)
63 KOG4658 Apoptotic ATPase [Sign 86.7 0.59 1.3E-05 43.1 2.9 43 100-146 566-608 (889)
64 KOG3763 mRNA export factor TAP 86.1 1.4 3.1E-05 37.9 4.6 84 79-164 218-307 (585)
65 PF09372 PRANC: PRANC domain; 85.8 0.89 1.9E-05 29.8 2.7 26 40-65 69-94 (97)
66 KOG4308 LRR-containing protein 85.5 0.31 6.7E-06 41.7 0.5 88 104-195 203-301 (478)
67 PF07723 LRR_2: Leucine Rich R 85.0 0.75 1.6E-05 22.3 1.6 25 160-184 2-26 (26)
68 KOG0274 Cdc4 and related F-box 84.4 0.45 9.7E-06 41.3 1.0 39 39-77 104-142 (537)
69 KOG4658 Apoptotic ATPase [Sign 84.2 1.3 2.9E-05 40.9 3.9 105 78-191 570-675 (889)
70 PF13504 LRR_7: Leucine rich r 82.3 1.1 2.3E-05 19.3 1.3 12 184-195 1-12 (17)
71 PRK15386 type III secretion pr 79.3 2.1 4.6E-05 35.9 3.2 90 79-193 52-141 (426)
72 KOG4579 Leucine-rich repeat (L 78.2 1.1 2.4E-05 31.9 1.0 102 81-192 29-131 (177)
73 KOG4308 LRR-containing protein 77.3 1.3 2.7E-05 38.0 1.3 93 104-202 171-278 (478)
74 KOG0618 Serine/threonine phosp 75.7 0.87 1.9E-05 41.7 -0.1 85 100-195 378-463 (1081)
75 KOG4237 Extracellular matrix p 72.2 2.1 4.5E-05 35.7 1.3 66 101-172 270-335 (498)
76 KOG0444 Cytoskeletal regulator 70.2 0.61 1.3E-05 41.2 -2.2 61 131-194 172-232 (1255)
77 KOG0531 Protein phosphatase 1, 69.8 1.4 3E-05 36.9 -0.1 102 80-195 96-197 (414)
78 PF11035 SnAPC_2_like: Small n 69.7 1.3 2.7E-05 35.4 -0.4 40 11-50 210-250 (344)
79 PRK15370 E3 ubiquitin-protein 67.5 10 0.00022 34.6 4.7 11 105-115 220-230 (754)
80 KOG3735 Tropomodulin and leiom 63.7 35 0.00075 27.9 6.5 97 94-193 187-292 (353)
81 PF00560 LRR_1: Leucine Rich R 63.5 4.4 9.5E-05 18.4 1.0 13 185-199 1-13 (22)
82 KOG0472 Leucine-rich repeat pr 63.4 13 0.00027 31.4 4.1 36 157-195 504-539 (565)
83 PF07735 FBA_2: F-box associat 63.0 30 0.00065 20.6 6.1 54 132-191 11-69 (70)
84 PRK15386 type III secretion pr 62.7 5.3 0.00012 33.6 1.9 74 101-193 48-121 (426)
85 KOG3735 Tropomodulin and leiom 55.7 27 0.00058 28.5 4.7 85 118-204 184-273 (353)
86 KOG4579 Leucine-rich repeat (L 54.2 7.5 0.00016 27.8 1.2 81 79-168 53-133 (177)
87 KOG3926 F-box proteins [Amino 53.8 17 0.00037 28.7 3.2 38 39-76 198-236 (332)
88 PRK15370 E3 ubiquitin-protein 52.7 34 0.00074 31.3 5.4 53 79-142 325-377 (754)
89 PHA03100 ankyrin repeat protei 52.0 13 0.00028 31.6 2.6 27 41-67 446-472 (480)
90 PHA02875 ankyrin repeat protei 51.7 10 0.00022 31.6 1.9 26 40-65 384-409 (413)
91 KOG4237 Extracellular matrix p 49.7 7.3 0.00016 32.6 0.7 99 78-183 273-371 (498)
92 KOG0531 Protein phosphatase 1, 47.5 5.6 0.00012 33.3 -0.3 81 102-195 92-173 (414)
93 PHA02989 ankyrin repeat protei 46.0 19 0.00041 30.9 2.7 29 40-68 456-484 (494)
94 PHA02878 ankyrin repeat protei 42.9 19 0.00042 30.7 2.3 25 41-65 445-469 (477)
95 PF03382 DUF285: Mycoplasma pr 42.1 14 0.00031 25.0 1.2 62 96-160 27-88 (120)
96 smart00370 LRR Leucine-rich re 41.7 26 0.00056 16.3 1.8 11 158-168 2-12 (26)
97 smart00369 LRR_TYP Leucine-ric 41.7 26 0.00056 16.3 1.8 11 158-168 2-12 (26)
98 KOG2502 Tub family proteins [G 38.7 34 0.00074 28.0 2.9 37 41-77 43-87 (355)
99 COG4886 Leucine-rich repeat (L 38.4 20 0.00043 29.6 1.7 12 131-142 162-173 (394)
100 PHA02798 ankyrin-like protein; 37.0 31 0.00067 29.6 2.6 25 40-64 461-485 (489)
101 PF08004 DUF1699: Protein of u 31.7 1.5E+02 0.0032 20.6 4.7 34 105-141 17-50 (131)
102 KOG0617 Ras suppressor protein 30.8 4.1 9E-05 30.1 -3.1 58 103-168 54-112 (264)
103 smart00446 LRRcap occurring C- 25.3 58 0.0013 15.7 1.4 15 179-193 8-22 (26)
104 PHA02876 ankyrin repeat protei 24.2 60 0.0013 29.2 2.3 26 40-65 653-678 (682)
105 PHA03095 ankyrin-like protein; 23.7 76 0.0017 26.7 2.8 23 44-66 443-465 (471)
106 PF06881 Elongin_A: RNA polyme 23.3 1.2E+02 0.0026 20.1 3.2 32 41-72 2-33 (109)
107 smart00365 LRR_SD22 Leucine-ri 20.2 1E+02 0.0023 14.7 1.7 11 158-168 2-12 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.84 E-value=9.8e-22 Score=156.38 Aligned_cols=159 Identities=30% Similarity=0.515 Sum_probs=138.6
Q ss_pred CCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh----cC--------------------------CCceEecCCCCCC
Q 028697 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI----CL--------------------------GLTHLSLSWCKNN 92 (205)
Q Consensus 43 ~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~----~~--------------------------~l~~L~l~~~~~~ 92 (205)
--.||.|++..||++|+...+++++.+|+.|...+ +| .++.+.+++|..+
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v 151 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAV 151 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccC
Confidence 35699999999999999999999999999999875 22 3678888888888
Q ss_pred CHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCC
Q 028697 93 MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFS 172 (205)
Q Consensus 93 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it 172 (205)
.+..+..+...|||+++|.+.+| ..++|..+..+++.|++|+.|++..|..+|+..++.+.+.|++|++++++.|+.|+
T Consensus 152 ~~sslrt~~~~CpnIehL~l~gc-~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 152 GDSSLRTFASNCPNIEHLALYGC-KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred CcchhhHHhhhCCchhhhhhhcc-eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence 88888889999999999999888 58999999999999999999999998889999999899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCeEeccCCccccccccc
Q 028697 173 DHALAYLCGFCRKLKILNLCGCVKAATDYAL 203 (205)
Q Consensus 173 ~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~~ 203 (205)
..+++.+.++|++++.+..+||.. .+++++
T Consensus 231 ~~gv~~~~rG~~~l~~~~~kGC~e-~~le~l 260 (483)
T KOG4341|consen 231 GNGVQALQRGCKELEKLSLKGCLE-LELEAL 260 (483)
T ss_pred cCcchHHhccchhhhhhhhccccc-ccHHHH
Confidence 988999998888888888888876 666654
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-18 Score=133.59 Aligned_cols=155 Identities=26% Similarity=0.397 Sum_probs=94.7
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh----cC------------------------------------
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI----CL------------------------------------ 79 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~----~~------------------------------------ 79 (205)
...|..||||+++.||+.|..+++++++.|||||+++. .|
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~p 174 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQP 174 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCc
Confidence 34499999999999999999999999999999999973 22
Q ss_pred ------------------------------------------------------------CCceEecCCCCCCCHHHHHH
Q 028697 80 ------------------------------------------------------------GLTHLSLSWCKNNMNNLVLS 99 (205)
Q Consensus 80 ------------------------------------------------------------~l~~L~l~~~~~~~~~~~~~ 99 (205)
+|+.++++.|..++...+..
T Consensus 175 rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l 254 (419)
T KOG2120|consen 175 RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL 254 (419)
T ss_pred hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH
Confidence 35555555555555555556
Q ss_pred HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCC-CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697 100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSF-KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~ 178 (205)
+...|..|.+|++++| ..+++..-..+++--++|..|+++++. ++.+..+..+.+.||+|.+|+++.|..+++..+..
T Consensus 255 l~~scs~L~~LNlsWc-~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWC-FLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred HHHhhhhHhhcCchHh-hccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence 6666666666666665 233333222222223445555555442 23344455555556666666666655555544444
Q ss_pred HHhcCCCCCeEeccCCcc
Q 028697 179 LCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 179 l~~~~~~L~~L~l~~c~~ 196 (205)
+. .++.|++|.++.|+-
T Consensus 334 ~~-kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 334 FF-KFNYLQHLSLSRCYD 350 (419)
T ss_pred HH-hcchheeeehhhhcC
Confidence 43 455555555555553
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.66 E-value=6.8e-17 Score=129.03 Aligned_cols=146 Identities=29% Similarity=0.510 Sum_probs=109.3
Q ss_pred cCChhHHHHhhccchhhHHhh------------------cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC
Q 028697 57 LVDEPTVIVASGVCSGWRDAI------------------CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ 118 (205)
Q Consensus 57 ~l~~~~l~~~~~vck~w~~~~------------------~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 118 (205)
++....+..++++|+.|+.+. +++++++++++|.+++...+..+.+.|.+++.+.+.+| ..
T Consensus 176 ~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC-~e 254 (483)
T KOG4341|consen 176 KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC-LE 254 (483)
T ss_pred eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc-cc
Confidence 557777788888999888763 45677888888877777666677777777766666665 46
Q ss_pred CCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccc
Q 028697 119 LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAA 198 (205)
Q Consensus 119 ~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~ 198 (205)
..++.+..+..+|+.+.++++..|..+||+++..+...|..|+.|..++|+.+++..+.++..+|++|+.|.+.+|.+ +
T Consensus 255 ~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-f 333 (483)
T KOG4341|consen 255 LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-F 333 (483)
T ss_pred ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-h
Confidence 666666666666677777777777777888877777777778888888888888888888888888888888888877 7
Q ss_pred cccccc
Q 028697 199 TDYALQ 204 (205)
Q Consensus 199 ~d~~~~ 204 (205)
+|.+++
T Consensus 334 sd~~ft 339 (483)
T KOG4341|consen 334 SDRGFT 339 (483)
T ss_pred hhhhhh
Confidence 777654
No 4
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.29 E-value=5.7e-12 Score=106.11 Aligned_cols=116 Identities=34% Similarity=0.516 Sum_probs=74.0
Q ss_pred cCCCceEecCCC-CC--CCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHH
Q 028697 78 CLGLTHLSLSWC-KN--NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA 154 (205)
Q Consensus 78 ~~~l~~L~l~~~-~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 154 (205)
+++++.++++.+ .. ........+...|++|+.|+++.+ ..++|..+..++..|++|+.|.+.+|..++++++..+.
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC-GLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh-hccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 456666666542 11 122223346666677777777765 24677777777777777777776666557777777777
Q ss_pred hcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194 (205)
Q Consensus 155 ~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c 194 (205)
+.|++|++|++++|..+++.++..++..|++|+.|.+..+
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 7777777777777777777777777766776666554433
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.19 E-value=1.8e-10 Score=97.05 Aligned_cols=126 Identities=33% Similarity=0.486 Sum_probs=101.5
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCC--HHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHh
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE--DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH 155 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 155 (205)
++.++.+.+..|..+++..+..+...+++|++|+++.+...+. ......+...|++|+.|++.++..++|.++..++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5667788888887788777888889999999999986211222 22344466778899999999986799999999998
Q ss_pred cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccccccc
Q 028697 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ 204 (205)
Q Consensus 156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~~~ 204 (205)
.|++|++|.+.+|..+|++++..++..|++|++|++++|.. ++|.++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~~d~~l~ 314 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG-LTDSGLE 314 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc-chHHHHH
Confidence 89999999988887799999999999999999999999987 7777653
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.00 E-value=4.5e-10 Score=64.27 Aligned_cols=36 Identities=33% Similarity=0.578 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhhc
Q 028697 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (205)
Q Consensus 43 ~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~~ 78 (205)
|..||+|++.+||+|++..++.++++|||+|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 678999999999999999999999999999999863
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=5e-08 Score=78.04 Aligned_cols=89 Identities=27% Similarity=0.309 Sum_probs=41.5
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHHHH---hcCCCCCEEeecCCCCCCHHHH
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDHAL 176 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~it~~~l 176 (205)
.+++|++|+++.+ .+++..+..+.. .+++|+.|+++++ .+++.+...+. ..+++|++|++++| .+++.++
T Consensus 163 ~~~~L~~L~l~~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~ 238 (319)
T cd00116 163 ANRDLKELNLANN--GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGA 238 (319)
T ss_pred hCCCcCEEECcCC--CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHH
Confidence 3445555555553 444433333322 2235555555554 44444433322 23445555555554 4555555
Q ss_pred HHHHhcC----CCCCeEeccCCc
Q 028697 177 AYLCGFC----RKLKILNLCGCV 195 (205)
Q Consensus 177 ~~l~~~~----~~L~~L~l~~c~ 195 (205)
..++..+ ++|++|++.+|.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCC
Confidence 5554433 455555555554
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2e-09 Score=83.63 Aligned_cols=116 Identities=27% Similarity=0.427 Sum_probs=92.8
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
|..|..|++++|.-.++..-..+..-.++|+.|+++++...+.+..++.+.++||+|..|+++.+..++++.+..+. .+
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf 337 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KF 337 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hc
Confidence 56788999999987666644455556678999999988667777788888889999999999988788886655554 58
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+.|++|.++.|-.|..+.+..+. .-|.|.+|++.||.
T Consensus 338 ~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGCV 374 (419)
T ss_pred chheeeehhhhcCCChHHeeeec-cCcceEEEEecccc
Confidence 88999999999888888877776 56889999999885
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=1e-07 Score=76.26 Aligned_cols=117 Identities=25% Similarity=0.219 Sum_probs=87.8
Q ss_pred CCCceEecCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCCHHHHHHH---HhcCcccceeeccCCCCCCHHHHHH
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLA---PKLTKLQTLVLRQDKPQLEDNAVEAI---ANSCHDLQDLDLSKSFKLSDRSLYA 152 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~~~~ 152 (205)
..+++|+++++. +++..+..+. ..+++|++|++++| .+++.....+ ...+++|+.|+++++ .+++.++..
T Consensus 165 ~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~ 240 (319)
T cd00116 165 RDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN--GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA 240 (319)
T ss_pred CCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC--ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence 468888888754 5544444443 34569999999997 6776655444 345789999999997 799888888
Q ss_pred HHhcC----CCCCEEeecCCCCCCHHHHHHHHh---cCCCCCeEeccCCcccccccc
Q 028697 153 LAHGC----PNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYA 202 (205)
Q Consensus 153 l~~~~----~~L~~L~l~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~ 202 (205)
+...+ +.|++|++++| .+++.+...+.+ .+++|++++++++. +++++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~--l~~~~ 294 (319)
T cd00116 241 LASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK--FGEEG 294 (319)
T ss_pred HHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC--CcHHH
Confidence 77765 79999999998 888777766654 45689999999987 56653
No 10
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=4.2e-08 Score=72.22 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=73.2
Q ss_pred ccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCC
Q 028697 107 LQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL 186 (205)
Q Consensus 107 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L 186 (205)
++.++-+++ .+...+++.+. .++.|+.|.+.+|.++.|.++..+....++|+.|++++|+.||+.++..+. .+++|
T Consensus 103 IeaVDAsds--~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 103 IEAVDASDS--SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred EEEEecCCc--hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 566666664 77778888885 588999999999999999999999988899999999999999999998888 68999
Q ss_pred CeEeccCCcc
Q 028697 187 KILNLCGCVK 196 (205)
Q Consensus 187 ~~L~l~~c~~ 196 (205)
+.|.+.+-+-
T Consensus 179 r~L~l~~l~~ 188 (221)
T KOG3864|consen 179 RRLHLYDLPY 188 (221)
T ss_pred HHHHhcCchh
Confidence 9998887654
No 11
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.52 E-value=4.6e-08 Score=56.06 Aligned_cols=36 Identities=33% Similarity=0.546 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 42 EWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 42 ~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
.|.+||+|++.+||+|++..++..++.|||+|++++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~ 37 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLV 37 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHH
Confidence 367899999999999999999999999999999974
No 12
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.41 E-value=3.1e-07 Score=50.58 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=30.6
Q ss_pred CCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 46 IPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 46 Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
||+|++.+||.|++..++.+++.|||+|+.++
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999984
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.41 E-value=4.8e-07 Score=79.49 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=51.0
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD 147 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~ 147 (205)
..+|++|++++...++......+...+|+|++|.+++- .+....+..+...+|+|.+|+++++ ++++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~--~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n 187 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR--QFDNDDFSQLCASFPNLRSLDISGT-NISN 187 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc--eecchhHHHHhhccCccceeecCCC-CccC
Confidence 34678888888776777777788888888888888873 5555567778888888888888885 5553
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=1.7e-05 Score=63.13 Aligned_cols=115 Identities=23% Similarity=0.243 Sum_probs=82.2
Q ss_pred cCCCceEecCCCCCCCH--HHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHH
Q 028697 78 CLGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYA 152 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~ 152 (205)
.+.++.+.++....-+. ..+..-+.+||+|+.|+++.+ .++...=..++. ..++|+.|+++.| .+.+.+...
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN--tft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN--TFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc--hhhhHHHHHHHHHhcccchheeeccccc-ccccccHHH
Confidence 45567777765443222 234455679999999999986 566555445544 3468999999998 788777666
Q ss_pred HH----hcCCCCCEEeecCCCCCCHHHHHHHHh---cCCCCCeEeccCCcc
Q 028697 153 LA----HGCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVK 196 (205)
Q Consensus 153 l~----~~~~~L~~L~l~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~ 196 (205)
+. ...|.|+.|.+.++ .|+..+...++. .-|.|+.|++.+|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 54 45689999999887 888877766662 368899999999974
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.1e-06 Score=70.03 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCC--CHHHHHHHHhcC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKL--SDRSLYALAHGC 157 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l--~~~~~~~l~~~~ 157 (205)
.|+.+.+.++. +.........+.||+++.|+++.. ....=..+..|++.+|+|+.|+++.+--. ++.... ...
T Consensus 122 kL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l 196 (505)
T KOG3207|consen 122 KLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LLL 196 (505)
T ss_pred hhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccch---hhh
Confidence 34555555543 233333356667777777777764 12222345566666777777777654210 111111 134
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c 194 (205)
+.|+.|.+++| +++...+..++..||+|+.|.+.+-
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 56777777777 7777777777777777777776665
No 16
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=8.3e-06 Score=60.28 Aligned_cols=104 Identities=23% Similarity=0.222 Sum_probs=74.6
Q ss_pred CceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCC
Q 028697 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (205)
Q Consensus 81 l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 160 (205)
++.++-+++. +...++.. ...++.++.|.+..| .++.|..+..+....++|+.|++++|+.||+.++.-+.. +++|
T Consensus 103 IeaVDAsds~-I~~eGle~-L~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEH-LRDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL 178 (221)
T ss_pred EEEEecCCch-HHHHHHHH-Hhccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence 4555555432 33444433 346788999999998 699999999999988999999999999999999988764 8999
Q ss_pred CEEeecCCCCCCHHHHHHH--HhcCCCCCe
Q 028697 161 TRLNISGCTSFSDHALAYL--CGFCRKLKI 188 (205)
Q Consensus 161 ~~L~l~~~~~it~~~l~~l--~~~~~~L~~ 188 (205)
+.|++.+-..+..-..... -..+|++..
T Consensus 179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred HHHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 9999977655543333222 234565543
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.8e-06 Score=69.33 Aligned_cols=88 Identities=22% Similarity=0.173 Sum_probs=62.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+++++.|+++..---....+..++..+|+|+.|+++.+. +....=.......++|+.|.++.| +++-..+..+...+
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr--l~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~f 221 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR--LSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTF 221 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc--ccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhC
Confidence 678888888865433455677888889999999998752 211111111124678888889888 78888888888888
Q ss_pred CCCCEEeecCC
Q 028697 158 PNLTRLNISGC 168 (205)
Q Consensus 158 ~~L~~L~l~~~ 168 (205)
|+|+.|.+.++
T Consensus 222 Psl~~L~L~~N 232 (505)
T KOG3207|consen 222 PSLEVLYLEAN 232 (505)
T ss_pred CcHHHhhhhcc
Confidence 88888888765
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.85 E-value=3.6e-06 Score=61.71 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=41.3
Q ss_pred CCHHHHHHHHhcCChhHHHHhhccchhhH-----HhhcCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCC
Q 028697 46 IPMELLLRILSLVDEPTVIVASGVCSGWR-----DAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120 (205)
Q Consensus 46 Lp~e~l~~If~~l~~~~l~~~~~vck~w~-----~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 120 (205)
|..+.+++|.++.+...+....+-..+-. ...+..++.|+++++.-..-+ -...+++|+.|+++.+ .++
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N--~I~ 77 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNN--RIS 77 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--T----T----TT--EEE--SS-----
T ss_pred ccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCC--CCC
Confidence 45567777777775333322222211111 112456778888775432222 2334677888888775 444
Q ss_pred HHHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHhcCCCCCEEeecCCCCCCHH--HHHHHHhcCCCCCeEeccCCc
Q 028697 121 DNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCTSFSDH--ALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 121 ~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~it~~--~l~~l~~~~~~L~~L~l~~c~ 195 (205)
.- -..+...+|+|+.|.++++ .+.+ ..+..+ ..+|+|++|++.++ .+++. .-..+...+|+|+.||-....
T Consensus 78 ~i-~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 78 SI-SEGLDKNLPNLQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp S--CHHHHHH-TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred cc-ccchHHhCCcCCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEcc
Confidence 31 1223345778888888775 4433 223333 35788888888775 33321 122334467888888765443
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=1.3e-05 Score=70.63 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=58.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCH
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD 173 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~ 173 (205)
.+|++|++++. ..++..+...++..+|+|++|.+.+. .+..+.+..++.++|+|..||++++ ++++
T Consensus 122 ~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n 187 (699)
T KOG3665|consen 122 QNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISN 187 (699)
T ss_pred HhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccC
Confidence 58999999985 67888899999999999999999985 6666679999999999999999997 6664
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=0.00013 Score=58.31 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCCceEecCCCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCHH---HHHHHHhcCcccceeeccCCCCCCHHHHHHH
Q 028697 79 LGLTHLSLSWCKN--NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN---AVEAIANSCHDLQDLDLSKSFKLSDRSLYAL 153 (205)
Q Consensus 79 ~~l~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 153 (205)
+.|+.+..++... -+...+...++.+|+|+.+.+.++ .+... .+..-..+|++|+.|++..+ ..+.++-..+
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN--~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~L 233 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN--GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVAL 233 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecc--cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHH
Confidence 4566666655432 123345566677788888888775 33322 33333457888888888775 5666665555
Q ss_pred Hhc---CCCCCEEeecCCCCCCHHHHHHHH----hcCCCCCeEeccCCc
Q 028697 154 AHG---CPNLTRLNISGCTSFSDHALAYLC----GFCRKLKILNLCGCV 195 (205)
Q Consensus 154 ~~~---~~~L~~L~l~~~~~it~~~l~~l~----~~~~~L~~L~l~~c~ 195 (205)
+.. .|+|+.|.+++| .+.+.+..++. ...|+|+.|.+.|+.
T Consensus 234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 543 456778888887 66665555555 356788888888876
No 21
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.71 E-value=5.1e-05 Score=37.32 Aligned_cols=24 Identities=50% Similarity=1.027 Sum_probs=15.9
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHH
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
||+|++|++++|.+|||.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 466666666666666666666665
No 22
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.42 E-value=0.00012 Score=67.36 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=21.0
Q ss_pred cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
.+++|++|+++++ .++...-..+. .+++|++|++++|.
T Consensus 162 ~l~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~n~ 199 (968)
T PLN00113 162 SFSSLKVLDLGGN-VLVGKIPNSLT-NLTSLEFLTLASNQ 199 (968)
T ss_pred cCCCCCEEECccC-cccccCChhhh-hCcCCCeeeccCCC
Confidence 4566777777665 33322222222 46677777777665
No 23
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.30 E-value=0.00034 Score=34.32 Aligned_cols=24 Identities=46% Similarity=0.753 Sum_probs=14.3
Q ss_pred CcccceeeccCCCCCCHHHHHHHH
Q 028697 131 CHDLQDLDLSKSFKLSDRSLYALA 154 (205)
Q Consensus 131 ~~~L~~L~l~~~~~l~~~~~~~l~ 154 (205)
|++|+.|++.+|..|+|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 455666666666666666665554
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.24 E-value=9e-05 Score=54.36 Aligned_cols=107 Identities=31% Similarity=0.405 Sum_probs=39.8
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 159 (205)
.++.|+++++.. ..+..+...+.+|+.|+++.+ .++. +..+. .+++|+.|+++++ .++.-+ ..+...+|+
T Consensus 20 ~~~~L~L~~n~I---~~Ie~L~~~l~~L~~L~Ls~N--~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 20 KLRELNLRGNQI---STIENLGATLDKLEVLDLSNN--QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKNLPN 89 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS----S----TT-----TT--EEE--SS----S-C-HHHHHH-TT
T ss_pred cccccccccccc---ccccchhhhhcCCCEEECCCC--CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHhCCc
Confidence 567888887542 223345556789999999997 5553 44443 4789999999986 565431 123345899
Q ss_pred CCEEeecCCCCCCH-HHHHHHHhcCCCCCeEeccCCcccccc
Q 028697 160 LTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATD 200 (205)
Q Consensus 160 L~~L~l~~~~~it~-~~l~~l~~~~~~L~~L~l~~c~~~~~d 200 (205)
|++|.++++ .|.+ ..+..+. .||+|++|++.+.| +++
T Consensus 90 L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~NP--v~~ 127 (175)
T PF14580_consen 90 LQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGNP--VCE 127 (175)
T ss_dssp --EEE-TTS----SCCCCGGGG-G-TT--EEE-TT-G--GGG
T ss_pred CCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCCc--ccc
Confidence 999999876 6654 3344554 79999999999988 454
No 25
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.18 E-value=0.00038 Score=64.15 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=7.5
Q ss_pred hcCCCccEEEecCC
Q 028697 102 PKLTKLQTLVLRQD 115 (205)
Q Consensus 102 ~~~~~L~~L~l~~~ 115 (205)
..+++|++|+++++
T Consensus 161 ~~l~~L~~L~L~~n 174 (968)
T PLN00113 161 GSFSSLKVLDLGGN 174 (968)
T ss_pred hcCCCCCEEECccC
Confidence 34555555555554
No 26
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.00045 Score=54.41 Aligned_cols=106 Identities=22% Similarity=0.188 Sum_probs=74.3
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHH-HHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCE
Q 028697 84 LSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN-AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162 (205)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~ 162 (205)
+.+.+|..-+...+..+...+..++++++.++ .++|. .+..|.+++|+|+.|+++.+ .+.. .+..+.-...+|++
T Consensus 50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N--~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN--LISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRV 125 (418)
T ss_pred heecCCCCCcchhHHHHHHHhhhhhhhhcccc--hhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEE
Confidence 33445554455566778888888888888885 77774 46667788888999988875 3322 23333233568888
Q ss_pred EeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194 (205)
Q Consensus 163 L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c 194 (205)
|.++|. ++.........+..|.+++|+++..
T Consensus 126 lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCC-CCChhhhhhhhhcchhhhhhhhccc
Confidence 888774 8888888888888888888877754
No 27
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.87 E-value=0.0009 Score=54.63 Aligned_cols=38 Identities=24% Similarity=0.618 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHhcC-ChhHHHHhhccchhhHHhhc
Q 028697 41 TEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAIC 78 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l-~~~~l~~~~~vck~w~~~~~ 78 (205)
..|.+||.|+|..|.++| ...|+++.+.||+.||..+.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 469999999999999999 78899999999999999753
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.76 E-value=0.0012 Score=61.96 Aligned_cols=39 Identities=18% Similarity=0.412 Sum_probs=26.0
Q ss_pred cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 196 (205)
.+++|+.|++++|.+++.-. .-...+++|+.+++++|.+
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred cCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCcc
Confidence 46778888888777665422 2223567788888888876
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.74 E-value=0.012 Score=46.00 Aligned_cols=97 Identities=16% Similarity=0.294 Sum_probs=60.7
Q ss_pred cCCCccEEEecCCC-CCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHH----hcCCCCCEEeecCCCCCCHHHHH
Q 028697 103 KLTKLQTLVLRQDK-PQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA----HGCPNLTRLNISGCTSFSDHALA 177 (205)
Q Consensus 103 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~it~~~l~ 177 (205)
.-|.|+.+....+. .+.+........+...+|+.+.+-.+ .|.++++..+. ..+.+|+.|++..+ .+|..+-.
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~ 232 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSR 232 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHH
Confidence 33567777665531 12223333344443357888887775 77777655443 45788999998775 67777766
Q ss_pred HHHhcC---CCCCeEeccCCccccccccc
Q 028697 178 YLCGFC---RKLKILNLCGCVKAATDYAL 203 (205)
Q Consensus 178 ~l~~~~---~~L~~L~l~~c~~~~~d~~~ 203 (205)
+++... +.|++|.+.+|- ++.+|.
T Consensus 233 ~La~al~~W~~lrEL~lnDCl--ls~~G~ 259 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCL--LSNEGV 259 (388)
T ss_pred HHHHHhcccchhhhccccchh--hccccH
Confidence 666543 567888888887 455554
No 30
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.60 E-value=0.0027 Score=35.35 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=24.5
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD 200 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d 200 (205)
++|++|+++++ .+++ +......+++|++|+++++. ++|
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~--i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNP--ISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSC--CSB
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCC--CCC
Confidence 46788888775 6765 44423478888888888875 554
No 31
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.38 E-value=0.0019 Score=51.00 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCCCCCCCHHHHHHHHhcC-----ChhHHHHhhccchhhHHhh
Q 028697 40 ITEWKDIPMELLLRILSLV-----DEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l-----~~~~l~~~~~vck~w~~~~ 77 (205)
...+..||||+|.+||..+ +.+++.+++.|||.|+..+
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 3446789999999999865 6788999999999999874
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.34 E-value=8.8e-05 Score=44.50 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=17.2
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++.-.-. ...++++|++|+++++.
T Consensus 24 l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 24 LPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp GTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSS
T ss_pred CCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 455555555543 33321111 12255666666666553
No 33
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.01 E-value=0.006 Score=29.07 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=11.5
Q ss_pred CCCCEEeecCCCCCCHHHHHHHH
Q 028697 158 PNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
++|++|++++| .+++.++.+|+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHhC
Confidence 45666666555 46666665554
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.96 E-value=0.0052 Score=55.20 Aligned_cols=85 Identities=28% Similarity=0.365 Sum_probs=46.6
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
.+++.|++|+++++ .++. .-..++ .|+.|+.|..+++.-+.-. .+ ...++|+.++++ |.+++...+.+...
T Consensus 404 ~kle~LeeL~LSGN--kL~~-Lp~tva-~~~~L~tL~ahsN~l~~fP---e~-~~l~qL~~lDlS-~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 404 RKLEELEELNLSGN--KLTT-LPDTVA-NLGRLHTLRAHSNQLLSFP---EL-AQLPQLKVLDLS-CNNLSEVTLPEALP 474 (1081)
T ss_pred hchHHhHHHhcccc--hhhh-hhHHHH-hhhhhHHHhhcCCceeech---hh-hhcCcceEEecc-cchhhhhhhhhhCC
Confidence 34455666666654 2221 112222 2455555555443111111 11 236788899994 45777776666553
Q ss_pred cCCCCCeEeccCCcc
Q 028697 182 FCRKLKILNLCGCVK 196 (205)
Q Consensus 182 ~~~~L~~L~l~~c~~ 196 (205)
. |+|++|+++|-.+
T Consensus 475 ~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 S-PNLKYLDLSGNTR 488 (1081)
T ss_pred C-cccceeeccCCcc
Confidence 3 7899999998775
No 35
>PLN03150 hypothetical protein; Provisional
Probab=95.94 E-value=0.0096 Score=52.49 Aligned_cols=116 Identities=23% Similarity=0.235 Sum_probs=70.4
Q ss_pred hhHHhhcC--------CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCC
Q 028697 72 GWRDAICL--------GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSF 143 (205)
Q Consensus 72 ~w~~~~~~--------~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 143 (205)
.|..+.|. .+..|+|+++. +.. .+..-...+++|+.|+++.+ .+....-..+ ..+++|+.|+++++
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~-L~g-~ip~~i~~L~~L~~L~Ls~N--~l~g~iP~~~-~~l~~L~~LdLs~N- 476 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQG-LRG-FIPNDISKLRHLQSINLSGN--SIRGNIPPSL-GSITSLEVLDLSYN- 476 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCC-ccc-cCCHHHhCCCCCCEEECCCC--cccCcCChHH-hCCCCCCEEECCCC-
Confidence 58877652 26778887653 221 12223457899999999986 4443322233 45889999999987
Q ss_pred CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 144 KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 144 ~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
.++...-.. ...+++|++|+++++ .++...-..+.....++..+++.+..
T Consensus 477 ~lsg~iP~~-l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 477 SFNGSIPES-LGQLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCCchH-HhcCCCCCEEECcCC-cccccCChHHhhccccCceEEecCCc
Confidence 454321112 235889999999886 45433223333333456677776554
No 36
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.0087 Score=46.96 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=61.2
Q ss_pred ceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCC
Q 028697 82 THLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT 161 (205)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 161 (205)
+.|+.-+|. +++ .++..+.|.|+.|.|+-+ .++ .+..+. +|.+|+.|.|..+ .|.+-.-..-..++|+|+
T Consensus 22 kKLNcwg~~-L~D---Isic~kMp~lEVLsLSvN--kIs--sL~pl~-rCtrLkElYLRkN-~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 22 KKLNCWGCG-LDD---ISICEKMPLLEVLSLSVN--KIS--SLAPLQ-RCTRLKELYLRKN-CIESLDELEYLKNLPSLR 91 (388)
T ss_pred hhhcccCCC-ccH---HHHHHhcccceeEEeecc--ccc--cchhHH-HHHHHHHHHHHhc-ccccHHHHHHHhcCchhh
Confidence 555554554 444 357778888998888875 444 566664 5888888888875 455444333345688888
Q ss_pred EEeecCCCCCCHH---HHHHHHhcCCCCCeEe
Q 028697 162 RLNISGCTSFSDH---ALAYLCGFCRKLKILN 190 (205)
Q Consensus 162 ~L~l~~~~~it~~---~l~~l~~~~~~L~~L~ 190 (205)
.|.|..+...... --....+-+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888654333222 2223335678887775
No 37
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.66 E-value=0.014 Score=55.08 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=5.5
Q ss_pred CcccceeeccCC
Q 028697 131 CHDLQDLDLSKS 142 (205)
Q Consensus 131 ~~~L~~L~l~~~ 142 (205)
+++|+.|++++|
T Consensus 656 l~~Le~L~L~~c 667 (1153)
T PLN03210 656 ATNLETLKLSDC 667 (1153)
T ss_pred CCcccEEEecCC
Confidence 344444444444
No 38
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.42 E-value=0.0099 Score=51.17 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=37.1
Q ss_pred cCcccceeeccCCC---CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 130 SCHDLQDLDLSKSF---KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 130 ~~~~L~~L~l~~~~---~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
...+|+.|+|.++. -|.|.+ ...++++.|+.|.+.|. ++..-.=.++ .++++|++|++.+-.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa--~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAA--VAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNA 427 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecch--hhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCc
Confidence 34677777777642 133322 22345788888888775 4433332333 378888888887754
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.0053 Score=48.59 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=50.9
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC----CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHH
Q 028697 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS----FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179 (205)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~----~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l 179 (205)
..||+.|.+++. .++=..........|.++.|+++-+ .+++++.... ..+.+++|+..+|...-......+
T Consensus 120 ~~nl~~lVLNgT--~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 120 LKNLRVLVLNGT--GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred ccceEEEEEcCC--CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhH
Confidence 346666666552 4443334444445555565555532 1223333222 235666777777765566667777
Q ss_pred HhcCCCCCeEeccCCc
Q 028697 180 CGFCRKLKILNLCGCV 195 (205)
Q Consensus 180 ~~~~~~L~~L~l~~c~ 195 (205)
.+.+|++..+-+..|+
T Consensus 195 ~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGP 210 (418)
T ss_pred HhhcccchheeeecCc
Confidence 7888999999888887
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.13 E-value=0.017 Score=32.11 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=14.2
Q ss_pred ccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCC
Q 028697 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC 168 (205)
Q Consensus 133 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 168 (205)
+|+.|+++++ .+++ +......+++|++|+++++
T Consensus 2 ~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC
Confidence 4555555554 3432 1121234555555555554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.10 E-value=0.00072 Score=40.44 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCC
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC 168 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 168 (205)
|+|++|+++.+ .++.- -......+++|+.|+++++ .++.-.-. ....+++|++|+++++
T Consensus 1 p~L~~L~l~~n--~l~~i-~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN--KLTEI-PPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS--TESEE-CTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC--CCCcc-CHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence 45667777665 33311 1112234567777777764 33311111 1245677777777665
No 42
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.08 E-value=0.003 Score=54.20 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=43.0
Q ss_pred cCCCccEEEecCCC-CCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCC--CCCHHHHHHH
Q 028697 103 KLTKLQTLVLRQDK-PQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCT--SFSDHALAYL 179 (205)
Q Consensus 103 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~--~it~~~l~~l 179 (205)
.|++|+.|+++++. ..+....+. .+.+|+.|+|+.+ .++.-.=. ....+++|++|++.+.. +....+....
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~----~L~~Le~LnLs~N-si~~l~e~-af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFR----VLSQLEELNLSHN-SIDHLAEG-AFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred hcccceeEeccccccccCChhHHH----HHHHhhhhccccc-chHHHHhh-HHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 55667777776641 111222222 2345667766654 33321111 12345678888876542 1112222333
Q ss_pred HhcCCCCCeEeccCCc
Q 028697 180 CGFCRKLKILNLCGCV 195 (205)
Q Consensus 180 ~~~~~~L~~L~l~~c~ 195 (205)
. +++.|+.|++.|-.
T Consensus 389 ~-gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 389 N-GLPSLRKLRLTGNQ 403 (873)
T ss_pred c-cchhhhheeecCce
Confidence 3 57888888887653
No 43
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.99 E-value=0.021 Score=27.10 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=10.4
Q ss_pred cccceeeccCCCCCCHHHHHHHH
Q 028697 132 HDLQDLDLSKSFKLSDRSLYALA 154 (205)
Q Consensus 132 ~~L~~L~l~~~~~l~~~~~~~l~ 154 (205)
++|+.|+++++ .++++++..++
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHhC
Confidence 45555555554 35555555443
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.99 E-value=0.3 Score=38.50 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=76.8
Q ss_pred cCCCceEecCCCCC--CCHHHHHHHHhcCCCccEEEecCCCCCCCH-------HHHHHHHh-----cCcccceeeccCCC
Q 028697 78 CLGLTHLSLSWCKN--NMNNLVLSLAPKLTKLQTLVLRQDKPQLED-------NAVEAIAN-----SCHDLQDLDLSKSF 143 (205)
Q Consensus 78 ~~~l~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-------~~l~~l~~-----~~~~L~~L~l~~~~ 143 (205)
|+.+..+++|.... -..+.+..+..+..+|++|.+++| .... ..+.+++. .-|.|+....+.+.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn--GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN--GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC--CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 67788888875431 123445567778888999999886 2221 22333332 23678888877652
Q ss_pred --CCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH----hcCCCCCeEeccCCc
Q 028697 144 --KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC----GFCRKLKILNLCGCV 195 (205)
Q Consensus 144 --~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~----~~~~~L~~L~l~~c~ 195 (205)
+-+........+.-.+|+.+.+..+ +|.++++..++ .+|.+|+.|++.+..
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 2334445555555679999999775 89998877776 478999999998865
No 45
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.82 E-value=0.012 Score=45.33 Aligned_cols=89 Identities=27% Similarity=0.407 Sum_probs=52.0
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHhcCCCCCEEeecCCC--CCCHHHHHHH
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCT--SFSDHALAYL 179 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~--~it~~~l~~l 179 (205)
..|+|+.|.++.+..++ ...+..++..+|+|++|+++++ ++.+ ..+.. ....++|..|++..|. ++++- =..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~-~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dy-re~v 138 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRV-SGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDY-REKV 138 (260)
T ss_pred CcchhhhhcccCCcccc-cccceehhhhCCceeEEeecCC-ccccccccch-hhhhcchhhhhcccCCccccccH-HHHH
Confidence 55688888887742223 3456666677788888888875 5553 22222 2346678888887763 22221 1223
Q ss_pred HhcCCCCCeEeccCCc
Q 028697 180 CGFCRKLKILNLCGCV 195 (205)
Q Consensus 180 ~~~~~~L~~L~l~~c~ 195 (205)
..-.|+|++|+-..+.
T Consensus 139 f~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHhhhhccccccccC
Confidence 3346777777665543
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.78 E-value=0.02 Score=46.01 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=34.3
Q ss_pred CCCCCCCC----HHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 40 ITEWKDIP----MELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 40 ~~~~~~Lp----~e~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
...++.|| +++-+.||+||+-.+++.+-.|||+|+.+.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHh
Confidence 34567899 999999999999999999999999999973
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.73 E-value=0.013 Score=45.21 Aligned_cols=89 Identities=29% Similarity=0.413 Sum_probs=60.4
Q ss_pred HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCH-HHHHH
Q 028697 100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAY 178 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~-~~l~~ 178 (205)
+...+.+|+.+++.++ .++ .+..+. .+|+|+.|.++.++.-...++..++..+|+|+++.++++ ++.+ ..+..
T Consensus 38 l~d~~~~le~ls~~n~--glt--t~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p 111 (260)
T KOG2739|consen 38 LTDEFVELELLSVINV--GLT--TLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP 111 (260)
T ss_pred ccccccchhhhhhhcc--cee--ecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch
Confidence 3344556666666554 222 233332 367999999987533445567777888899999999986 7763 44444
Q ss_pred HHhcCCCCCeEeccCCc
Q 028697 179 LCGFCRKLKILNLCGCV 195 (205)
Q Consensus 179 l~~~~~~L~~L~l~~c~ 195 (205)
+. .+++|.+|++..|+
T Consensus 112 l~-~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 112 LK-ELENLKSLDLFNCS 127 (260)
T ss_pred hh-hhcchhhhhcccCC
Confidence 44 67889999999997
No 48
>PF13013 F-box-like_2: F-box-like domain
Probab=94.53 E-value=0.049 Score=36.64 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHhcCChhHHHHhhccch--hhHH
Q 028697 42 EWKDIPMELLLRILSLVDEPTVIVASGVCS--GWRD 75 (205)
Q Consensus 42 ~~~~Lp~e~l~~If~~l~~~~l~~~~~vck--~w~~ 75 (205)
.+.+||+|++..||.+.+..++......|+ +|+.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r 56 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWR 56 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999988888888 4443
No 49
>PLN03150 hypothetical protein; Provisional
Probab=94.41 E-value=0.043 Score=48.48 Aligned_cols=83 Identities=24% Similarity=0.242 Sum_probs=55.2
Q ss_pred CccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCC
Q 028697 106 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185 (205)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~ 185 (205)
.++.|+++.+ .+....-..+. .+++|+.|+++++ .++.. +......+++|+.|+++++ .++...-..+. .+++
T Consensus 419 ~v~~L~L~~n--~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQ--GLRGFIPNDIS-KLRHLQSINLSGN-SIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTS 491 (623)
T ss_pred EEEEEECCCC--CccccCCHHHh-CCCCCCEEECCCC-cccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCC
Confidence 3677888775 44433333444 5789999999986 44321 1112346899999999887 56543333344 7899
Q ss_pred CCeEeccCCc
Q 028697 186 LKILNLCGCV 195 (205)
Q Consensus 186 L~~L~l~~c~ 195 (205)
|++|+++++.
T Consensus 492 L~~L~Ls~N~ 501 (623)
T PLN03150 492 LRILNLNGNS 501 (623)
T ss_pred CCEEECcCCc
Confidence 9999999875
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.92 E-value=0.037 Score=44.04 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=20.0
Q ss_pred CCCCEEeecCCCCCCH-HHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~-~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
..|..|++.++ +|-. +.+..|. .+|-|+++.+.+.+
T Consensus 374 YSLvnLDl~~N-~Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 374 YSLVNLDLSSN-QIEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred hhheecccccc-chhhHHHhcccc-cccHHHHHhhcCCC
Confidence 45666777664 3322 2233333 56777777777665
No 51
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.33 E-value=0.16 Score=25.13 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=14.3
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGF 182 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~ 182 (205)
++|++|+++++ .+++++...+++.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 45666666554 6666666666543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=92.60 E-value=0.017 Score=51.01 Aligned_cols=103 Identities=27% Similarity=0.255 Sum_probs=49.0
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh-cCcccceeeccCCCCCCHHHHHHHHhc
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN-SCHDLQDLDLSKSFKLSDRSLYALAHG 156 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~l~~~~~~~l~~~ 156 (205)
++.+++|+|+..+. +. ......|+.|++|++++++ +. .+-.+.. .|+ |..|++.++.--+--++ .+
T Consensus 186 l~ale~LnLshNk~-~~---v~~Lr~l~~LkhLDlsyN~--L~--~vp~l~~~gc~-L~~L~lrnN~l~tL~gi----e~ 252 (1096)
T KOG1859|consen 186 LPALESLNLSHNKF-TK---VDNLRRLPKLKHLDLSYNC--LR--HVPQLSMVGCK-LQLLNLRNNALTTLRGI----EN 252 (1096)
T ss_pred HHHhhhhccchhhh-hh---hHHHHhcccccccccccch--hc--cccccchhhhh-heeeeecccHHHhhhhH----Hh
Confidence 34566666665432 21 1245566777777776641 11 0111111 233 66666666421122222 23
Q ss_pred CCCCCEEeecCCCCCCH-HHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~-~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|+.|+++++ -+.+ ..+..+. .+..|+.|.+.|.+
T Consensus 253 LksL~~LDlsyN-ll~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN-LLSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHh-hhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 556777777664 3322 2222222 34556666666655
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.33 E-value=0.07 Score=39.98 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=63.3
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 159 (205)
+...++++..... ....+.+.++|..|.++.+ +++.- =..+.+..|+|+.|.+.++.-..-..+..++ .||.
T Consensus 43 ~~d~iDLtdNdl~----~l~~lp~l~rL~tLll~nN--rIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR----KLDNLPHLPRLHTLLLNNN--RITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPK 114 (233)
T ss_pred ccceecccccchh----hcccCCCccccceEEecCC--cceee-ccchhhhccccceEEecCcchhhhhhcchhc-cCCc
Confidence 4566666553211 1235567788888888875 45431 1123344678888888886322333344443 5889
Q ss_pred CCEEeecCCCCCCHHHH--HHHHhcCCCCCeEeccCCc
Q 028697 160 LTRLNISGCTSFSDHAL--AYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 160 L~~L~l~~~~~it~~~l--~~l~~~~~~L~~L~l~~c~ 195 (205)
|++|.+-+. .++...- .++....|+|+.||+....
T Consensus 115 L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 999988775 4443321 1223457888988887754
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.21 E-value=0.2 Score=37.64 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=52.7
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHH--HhcCcccceeeccCCCCCC--HHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAI--ANSCHDLQDLDLSKSFKLS--DRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~ 178 (205)
...+...++++.+ .+..+ ..+.++|+.|.++++ .|+ +..+.. .+|+|+.|.+.+..-.--..+..
T Consensus 40 ~~d~~d~iDLtdN-------dl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~p 108 (233)
T KOG1644|consen 40 TLDQFDAIDLTDN-------DLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDP 108 (233)
T ss_pred cccccceeccccc-------chhhcccCCCccccceEEecCC-cceeeccchhh---hccccceEEecCcchhhhhhcch
Confidence 3456666666653 22222 246789999999986 555 333433 35899999998863223333556
Q ss_pred HHhcCCCCCeEeccCCc
Q 028697 179 LCGFCRKLKILNLCGCV 195 (205)
Q Consensus 179 l~~~~~~L~~L~l~~c~ 195 (205)
++ .||+|++|.+-+-+
T Consensus 109 La-~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 109 LA-SCPKLEYLTLLGNP 124 (233)
T ss_pred hc-cCCccceeeecCCc
Confidence 66 79999999888765
No 55
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.51 E-value=0.47 Score=23.35 Aligned_cols=24 Identities=46% Similarity=0.612 Sum_probs=14.9
Q ss_pred cccceeeccCCCCCCHHHHHHHHhc
Q 028697 132 HDLQDLDLSKSFKLSDRSLYALAHG 156 (205)
Q Consensus 132 ~~L~~L~l~~~~~l~~~~~~~l~~~ 156 (205)
++|+.|+|+++ .+++++...+++.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHH
Confidence 45666666665 6666666666543
No 56
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=90.39 E-value=0.4 Score=43.44 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=7.6
Q ss_pred CCCCEEeecCC
Q 028697 158 PNLTRLNISGC 168 (205)
Q Consensus 158 ~~L~~L~l~~~ 168 (205)
++|++|+++++
T Consensus 302 ~~L~~LdLS~N 312 (788)
T PRK15387 302 PGLQELSVSDN 312 (788)
T ss_pred cccceeECCCC
Confidence 56777777665
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=89.74 E-value=0.35 Score=38.68 Aligned_cols=100 Identities=24% Similarity=0.183 Sum_probs=57.2
Q ss_pred CceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCC
Q 028697 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (205)
Q Consensus 81 l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 160 (205)
+..+|++... ...+..-.+..|.++.|+++.+ .+. .+..+ ...++|..|+++++.--.-+++. ..+-|.
T Consensus 286 LtelDLS~N~---I~~iDESvKL~Pkir~L~lS~N--~i~--~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh---~KLGNI 354 (490)
T KOG1259|consen 286 LTELDLSGNL---ITQIDESVKLAPKLRRLILSQN--RIR--TVQNL-AELPQLQLLDLSGNLLAECVGWH---LKLGNI 354 (490)
T ss_pred hhhccccccc---hhhhhhhhhhccceeEEecccc--cee--eehhh-hhcccceEeecccchhHhhhhhH---hhhcCE
Confidence 5777777632 2223344456788889988875 332 12223 24688899998886322333432 235578
Q ss_pred CEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 161 ~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|.++++ .+-+ +.-+. .+-+|..|++++..
T Consensus 355 KtL~La~N-~iE~--LSGL~-KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 355 KTLKLAQN-KIET--LSGLR-KLYSLVNLDLSSNQ 385 (490)
T ss_pred eeeehhhh-hHhh--hhhhH-hhhhheeccccccc
Confidence 88888765 2211 11221 34567888887754
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=89.62 E-value=0.084 Score=46.89 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=48.4
Q ss_pred HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHH
Q 028697 100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l 179 (205)
-.+..+.+++|+++.+ ++++.. .+ +.|++|++|+|+++.--.-..+.. .+|. |+.|.+.++ .++. +.-+
T Consensus 182 SLqll~ale~LnLshN--k~~~v~--~L-r~l~~LkhLDlsyN~L~~vp~l~~--~gc~-L~~L~lrnN-~l~t--L~gi 250 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN--KFTKVD--NL-RRLPKLKHLDLSYNCLRHVPQLSM--VGCK-LQLLNLRNN-ALTT--LRGI 250 (1096)
T ss_pred HHHHHHHhhhhccchh--hhhhhH--HH-Hhcccccccccccchhccccccch--hhhh-heeeeeccc-HHHh--hhhH
Confidence 3345577888888875 555433 33 457888888888752111112221 1244 788888765 3322 2222
Q ss_pred HhcCCCCCeEeccCC
Q 028697 180 CGFCRKLKILNLCGC 194 (205)
Q Consensus 180 ~~~~~~L~~L~l~~c 194 (205)
. ++++|+.||+++.
T Consensus 251 e-~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 251 E-NLKSLYGLDLSYN 264 (1096)
T ss_pred H-hhhhhhccchhHh
Confidence 2 5678888888874
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=0.11 Score=40.95 Aligned_cols=80 Identities=25% Similarity=0.262 Sum_probs=57.6
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCH-HHHHHHHhcC
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFC 183 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~-~~l~~l~~~~ 183 (205)
.+.+.|++++| .++|- .|.+.++.|+.|.|+-+ +|+. +.. ...|++|+.|.+..+ .|.+ ..+.++ .++
T Consensus 19 ~~vkKLNcwg~--~L~DI---sic~kMp~lEVLsLSvN-kIss--L~p-l~rCtrLkElYLRkN-~I~sldEL~YL-knl 87 (388)
T KOG2123|consen 19 ENVKKLNCWGC--GLDDI---SICEKMPLLEVLSLSVN-KISS--LAP-LQRCTRLKELYLRKN-CIESLDELEYL-KNL 87 (388)
T ss_pred HHhhhhcccCC--CccHH---HHHHhcccceeEEeecc-cccc--chh-HHHHHHHHHHHHHhc-ccccHHHHHHH-hcC
Confidence 47888999997 78875 45577999999999864 4543 222 245899999999765 5544 334444 489
Q ss_pred CCCCeEeccCCc
Q 028697 184 RKLKILNLCGCV 195 (205)
Q Consensus 184 ~~L~~L~l~~c~ 195 (205)
|+|+.|.+...+
T Consensus 88 psLr~LWL~ENP 99 (388)
T KOG2123|consen 88 PSLRTLWLDENP 99 (388)
T ss_pred chhhhHhhccCC
Confidence 999999988655
No 60
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.06 E-value=1.2 Score=38.36 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=54.3
Q ss_pred HHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCC-C-CHHHHHHHHhcCCCCCEEeecCCCCC----
Q 028697 98 LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFK-L-SDRSLYALAHGCPNLTRLNISGCTSF---- 171 (205)
Q Consensus 98 ~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-l-~~~~~~~l~~~~~~L~~L~l~~~~~i---- 171 (205)
.......|.+..++++++. -..-+.+..+++..|+|+.|+|+++.. + +...+..+ ....|++|.+.|++-.
T Consensus 211 ~~~~~n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHhhcCCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 4445567778888887752 334456677777778888888887521 1 22223222 2456788888776321
Q ss_pred -CHHHHHHHHhcCCCCCeEe
Q 028697 172 -SDHALAYLCGFCRKLKILN 190 (205)
Q Consensus 172 -t~~~l~~l~~~~~~L~~L~ 190 (205)
..+-+.+|.+.+|+|..||
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 1344556666778887774
No 61
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=87.66 E-value=0.35 Score=43.82 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=7.5
Q ss_pred cccceeeccCC
Q 028697 132 HDLQDLDLSKS 142 (205)
Q Consensus 132 ~~L~~L~l~~~ 142 (205)
++|+.|+++++
T Consensus 302 ~~L~~LdLS~N 312 (788)
T PRK15387 302 PGLQELSVSDN 312 (788)
T ss_pred cccceeECCCC
Confidence 56777777765
No 62
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=86.99 E-value=0.11 Score=45.53 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=8.2
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
..++|+.|++++..
T Consensus 243 ~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK 256 (1255)
T ss_pred hhhhhheeccCcCc
Confidence 34566666666643
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=86.65 E-value=0.59 Score=43.09 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCC
Q 028697 100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS 146 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~ 146 (205)
++...|.|+.|++++|. . .......|+. +-+|+.|+++.+ .++
T Consensus 566 ff~~m~~LrVLDLs~~~-~-l~~LP~~I~~-Li~LryL~L~~t-~I~ 608 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNS-S-LSKLPSSIGE-LVHLRYLDLSDT-GIS 608 (889)
T ss_pred HHhhCcceEEEECCCCC-c-cCcCChHHhh-hhhhhcccccCC-Ccc
Confidence 45566667777776541 1 1122233332 345666666553 443
No 64
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.05 E-value=1.4 Score=37.92 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCH-HHHHHHHhcCcccceeeccCCCCCC-----HHHHHH
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLS-----DRSLYA 152 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~l~-----~~~~~~ 152 (205)
+.+..+.+++..-..-+.+..+....|+|..|+|+.+...+.. ..+..+ ....|++|-+.+++-++ .+.+.+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHHHH
Confidence 4567777877665566778889999999999999985223332 223333 34679999999875443 456777
Q ss_pred HHhcCCCCCEEe
Q 028697 153 LAHGCPNLTRLN 164 (205)
Q Consensus 153 l~~~~~~L~~L~ 164 (205)
|.+.+|+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 888899998876
No 65
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=85.82 E-value=0.89 Score=29.79 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=23.3
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHHH
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVIV 65 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~~ 65 (205)
...|..||.|+...|+++|+..|+..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHH
Confidence 37899999999999999999888754
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.48 E-value=0.31 Score=41.67 Aligned_cols=88 Identities=26% Similarity=0.371 Sum_probs=44.5
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhcC---cc-cceeeccCCCCCCHHHHHHHHhcCC----CCCEEeecCCCCCCHHH
Q 028697 104 LTKLQTLVLRQDKPQLEDNAVEAIANSC---HD-LQDLDLSKSFKLSDRSLYALAHGCP----NLTRLNISGCTSFSDHA 175 (205)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~---~~-L~~L~l~~~~~l~~~~~~~l~~~~~----~L~~L~l~~~~~it~~~ 175 (205)
..++++|.+..| .++......+.... ++ +..+++.++ .+.|.++..+...++ .+++++++.| .+++.+
T Consensus 203 ~~~le~L~L~~~--~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~ 278 (478)
T KOG4308|consen 203 LSSLETLKLSRC--GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKG 278 (478)
T ss_pred cccHHHHhhhhc--CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcC-Cccccc
Confidence 345666666665 44444444333222 22 444555554 556665555554433 3366666665 555555
Q ss_pred HHHHHh---cCCCCCeEeccCCc
Q 028697 176 LAYLCG---FCRKLKILNLCGCV 195 (205)
Q Consensus 176 l~~l~~---~~~~L~~L~l~~c~ 195 (205)
...+++ .|+.++++.+..-+
T Consensus 279 ~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 279 VRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHHhhhHHHHHhhcccCc
Confidence 444442 45555555555544
No 67
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=85.00 E-value=0.75 Score=22.28 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=10.9
Q ss_pred CCEEeecCCCCCCHHHHHHHHhcCC
Q 028697 160 LTRLNISGCTSFSDHALAYLCGFCR 184 (205)
Q Consensus 160 L~~L~l~~~~~it~~~l~~l~~~~~ 184 (205)
|++|++.....-.+..++.+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4455554442223334555544443
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.42 E-value=0.45 Score=41.31 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=35.2
Q ss_pred CCCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 39 ~~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
....+..||.|+..+||.||+.+++..+++||+.|+.+.
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence 455678899999999999999999999999999999873
No 69
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=84.24 E-value=1.3 Score=40.89 Aligned_cols=105 Identities=19% Similarity=0.102 Sum_probs=59.4
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
.+.|+.||++++.... .+......+-+|++|+++.. .+. ..-..+. .++.|.+|++......... ..+...+
T Consensus 570 m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t--~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~--~~i~~~L 641 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDT--GIS-HLPSGLG-NLKKLIYLNLEVTGRLESI--PGILLEL 641 (889)
T ss_pred CcceEEEECCCCCccC--cCChHHhhhhhhhcccccCC--Ccc-ccchHHH-HHHhhheeccccccccccc--cchhhhc
Confidence 4578899999754322 23344556678999999884 454 1222232 3567888888765322221 3334457
Q ss_pred CCCCEEeecCCC-CCCHHHHHHHHhcCCCCCeEec
Q 028697 158 PNLTRLNISGCT-SFSDHALAYLCGFCRKLKILNL 191 (205)
Q Consensus 158 ~~L~~L~l~~~~-~it~~~l~~l~~~~~~L~~L~l 191 (205)
++|++|.+.+.. ..+...+..+ ..+.+|+.+.+
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~ 675 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSI 675 (889)
T ss_pred ccccEEEeeccccccchhhHHhh-hcccchhhhee
Confidence 889999886543 3333333333 24444444444
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.27 E-value=1.1 Score=19.26 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=7.3
Q ss_pred CCCCeEeccCCc
Q 028697 184 RKLKILNLCGCV 195 (205)
Q Consensus 184 ~~L~~L~l~~c~ 195 (205)
++|+.|++++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 467777777776
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=79.29 E-value=2.1 Score=35.89 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=45.9
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
.++.+|++++|. +. .+-..-++|++|.+++| ..++ .+... ..++|+.|.+.+|..+. .+ -+
T Consensus 52 ~~l~~L~Is~c~-L~-----sLP~LP~sLtsL~Lsnc-~nLt--sLP~~--LP~nLe~L~Ls~Cs~L~-----sL---P~ 112 (426)
T PRK15386 52 RASGRLYIKDCD-IE-----SLPVLPNELTEITIENC-NNLT--TLPGS--IPEGLEKLTVCHCPEIS-----GL---PE 112 (426)
T ss_pred cCCCEEEeCCCC-Cc-----ccCCCCCCCcEEEccCC-CCcc--cCCch--hhhhhhheEccCccccc-----cc---cc
Confidence 566778777763 11 11112236888888775 2321 11111 12477888887765443 11 13
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccC
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCG 193 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~ 193 (205)
+|++|.+.+. .... + ..-.++|++|.+.+
T Consensus 113 sLe~L~L~~n-~~~~--L---~~LPssLk~L~I~~ 141 (426)
T PRK15386 113 SVRSLEIKGS-ATDS--I---KNVPNGLTSLSINS 141 (426)
T ss_pred ccceEEeCCC-CCcc--c---ccCcchHhheeccc
Confidence 6777777542 2221 2 22345677777643
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=78.18 E-value=1.1 Score=31.86 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=49.7
Q ss_pred CceEecCCCCCC-CHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697 81 LTHLSLSWCKNN-MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (205)
Q Consensus 81 l~~L~l~~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 159 (205)
+..++++.|.-. ..+.+ ......-.|+.++++++ . ....-..+...+|-++.|++.+. .+++-... ....|.
T Consensus 29 ~h~ldLssc~lm~i~dav-y~l~~~~el~~i~ls~N--~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE--~Aam~a 101 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAV-YMLSKGYELTKISLSDN--G-FKKFPKKFTIKFPTATTLNLANN-EISDVPEE--LAAMPA 101 (177)
T ss_pred hhhcccccchhhHHHHHH-HHHhCCceEEEEecccc--h-hhhCCHHHhhccchhhhhhcchh-hhhhchHH--HhhhHH
Confidence 345566665432 11222 22233445666677663 1 22223344455667777777764 45544433 224677
Q ss_pred CCEEeecCCCCCCHHHHHHHHhcCCCCCeEecc
Q 028697 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLC 192 (205)
Q Consensus 160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~ 192 (205)
|+.|++..+ .++. ....++. +.+|-.|+.-
T Consensus 102 Lr~lNl~~N-~l~~-~p~vi~~-L~~l~~Lds~ 131 (177)
T KOG4579|consen 102 LRSLNLRFN-PLNA-EPRVIAP-LIKLDMLDSP 131 (177)
T ss_pred hhhcccccC-cccc-chHHHHH-HHhHHHhcCC
Confidence 888888664 3332 2233332 4445554443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.27 E-value=1.3 Score=38.02 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=54.7
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHh-------cCcccceeeccCCCCCCHHHHHHHHh---cCCC-CCEEeecCCCCCC
Q 028697 104 LTKLQTLVLRQDKPQLEDNAVEAIAN-------SCHDLQDLDLSKSFKLSDRSLYALAH---GCPN-LTRLNISGCTSFS 172 (205)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~-------~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~-L~~L~l~~~~~it 172 (205)
...++.++++.+ .+.......+.+ ...+++.|++++| .++......+.. ..+. +..|++..+ .+.
T Consensus 171 ~~~l~~l~l~~n--~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~ 246 (478)
T KOG4308|consen 171 NEHLTELDLSLN--GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-KLG 246 (478)
T ss_pred ccchhHHHHHhc--ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-Ccc
Confidence 566666666665 222322222222 1236778888887 666655544433 3334 555777554 777
Q ss_pred HHHHHHHHhcCCCC----CeEeccCCcccccccc
Q 028697 173 DHALAYLCGFCRKL----KILNLCGCVKAATDYA 202 (205)
Q Consensus 173 ~~~l~~l~~~~~~L----~~L~l~~c~~~~~d~~ 202 (205)
|.++..+.+.++.. +++++..|. +++.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~ns--i~~~~ 278 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNS--ITEKG 278 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCC--ccccc
Confidence 77777777655444 788888887 56554
No 74
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=75.69 E-value=0.87 Score=41.69 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHhcCCCccEEEecCCCCC-CCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697 100 LAPKLTKLQTLVLRQDKPQ-LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~ 178 (205)
+...+++|+.|+++++..+ +.+..+. ....|+.|+++++ .++.-. ..+ ..++.|++|...+. .+...- .
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL~ahsN-~l~~fP--e 447 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTLRAHSN-QLLSFP--E 447 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHh----chHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHHhhcCC-ceeech--h
Confidence 4445566666666664212 2332222 3455666666664 332221 111 12556666666443 333222 3
Q ss_pred HHhcCCCCCeEeccCCc
Q 028697 179 LCGFCRKLKILNLCGCV 195 (205)
Q Consensus 179 l~~~~~~L~~L~l~~c~ 195 (205)
++ ..++|+.+|++.-.
T Consensus 448 ~~-~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 448 LA-QLPQLKVLDLSCNN 463 (1081)
T ss_pred hh-hcCcceEEecccch
Confidence 33 57888888887643
No 75
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=72.17 E-value=2.1 Score=35.66 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=32.0
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCC
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFS 172 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it 172 (205)
++..|+|+.|+++++ +++.-. ........+++.|.+..+ ++..-. ..+.++..+|+.|++.+. .||
T Consensus 270 f~~L~~L~~lnlsnN--~i~~i~-~~aFe~~a~l~eL~L~~N-~l~~v~-~~~f~~ls~L~tL~L~~N-~it 335 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN--KITRIE-DGAFEGAAELQELYLTRN-KLEFVS-SGMFQGLSGLKTLSLYDN-QIT 335 (498)
T ss_pred HhhcccceEeccCCC--ccchhh-hhhhcchhhhhhhhcCcc-hHHHHH-HHhhhccccceeeeecCC-eeE
Confidence 556677777777775 333211 111123345666666553 221111 112344566777777654 444
No 76
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=70.22 E-value=0.61 Score=41.19 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=27.7
Q ss_pred CcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194 (205)
Q Consensus 131 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c 194 (205)
+.+|++|.++++ -+..-.+..+. ++..|+.|++++. .-|-..+-.-...+.+|+.++++..
T Consensus 172 L~~LqtL~Ls~N-PL~hfQLrQLP-smtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 172 LSMLQTLKLSNN-PLNHFQLRQLP-SMTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred HhhhhhhhcCCC-hhhHHHHhcCc-cchhhhhhhcccc-cchhhcCCCchhhhhhhhhcccccc
Confidence 345666666664 34444444432 2455666666553 2222211111223445666666543
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=69.80 E-value=1.4 Score=36.92 Aligned_cols=102 Identities=25% Similarity=0.211 Sum_probs=58.1
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 159 (205)
++..+++.... -..+..+...+++|++|++++. .+++ +..+. .++.|+.|++.++ .+++-.- ...+++
T Consensus 96 ~l~~l~l~~n~---i~~i~~~l~~~~~L~~L~ls~N--~I~~--i~~l~-~l~~L~~L~l~~N-~i~~~~~---~~~l~~ 163 (414)
T KOG0531|consen 96 SLEALDLYDNK---IEKIENLLSSLVNLQVLDLSFN--KITK--LEGLS-TLTLLKELNLSGN-LISDISG---LESLKS 163 (414)
T ss_pred ceeeeeccccc---hhhcccchhhhhcchheecccc--cccc--ccchh-hccchhhheeccC-cchhccC---Cccchh
Confidence 45666665432 1222233557888899988885 5553 33343 2455888888876 3333221 112567
Q ss_pred CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
|+.++++++ .+++-.-.. ...+.+|+.+.+.+..
T Consensus 164 L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 164 LKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 888888776 454433311 3356777777777655
No 78
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=69.65 E-value=1.3 Score=35.37 Aligned_cols=40 Identities=13% Similarity=0.206 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHhcCCCCCCCccccCCCCCCC-CCCCCHHH
Q 028697 11 EDLNLCFEKMMMAGAGADRAGGVKMDGVVITE-WKDIPMEL 50 (205)
Q Consensus 11 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Lp~e~ 50 (205)
-||.|||.|++..+.++...+-.....++..+ +..||+|+
T Consensus 210 VDFEKIYKYLSsisr~~~~peLSa~ESAVvLDLLMSLPEEL 250 (344)
T PF11035_consen 210 VDFEKIYKYLSSISRSGHGPELSAAESAVVLDLLMSLPEEL 250 (344)
T ss_pred eeHHHHHHHHHHhccCCCCcccChHHHHHHHHHHHhCHHhh
Confidence 47999999999998888765554333332222 34455554
No 79
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=67.51 E-value=10 Score=34.63 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=6.7
Q ss_pred CCccEEEecCC
Q 028697 105 TKLQTLVLRQD 115 (205)
Q Consensus 105 ~~L~~L~l~~~ 115 (205)
++|+.|+++++
T Consensus 220 ~nL~~L~Ls~N 230 (754)
T PRK15370 220 GNIKTLYANSN 230 (754)
T ss_pred cCCCEEECCCC
Confidence 46666666654
No 80
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=63.75 E-value=35 Score=27.88 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcC---cccceeeccCCCCCCH---HHHHHHHhcCCCCCEEeecC
Q 028697 94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSC---HDLQDLDLSKSFKLSD---RSLYALAHGCPNLTRLNISG 167 (205)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~~l~~---~~~~~l~~~~~~L~~L~l~~ 167 (205)
+..+..+-..-|+++.++++.. .+++...+..+...+ .+.+...+.+. ..++ -++..+.+.++.|++|.+.+
T Consensus 187 e~~leri~~nd~~l~evnlnn~-~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnves 264 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNI-RRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVES 264 (353)
T ss_pred HHHHHHHhcCCCCceeeecccc-ccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheeccc
Confidence 3455566666678888888875 477777776665433 34444444432 2222 23444566678888888877
Q ss_pred CCCCCHHHHHHHHhcC---CCCCeEeccC
Q 028697 168 CTSFSDHALAYLCGFC---RKLKILNLCG 193 (205)
Q Consensus 168 ~~~it~~~l~~l~~~~---~~L~~L~l~~ 193 (205)
. .||..++.++...+ ..|..+.+..
T Consensus 265 n-FItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 265 N-FITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred c-ccccHHHHHHHHHHhccchhhHhhhhh
Confidence 5 88888888877544 3344444443
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=63.52 E-value=4.4 Score=18.45 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=10.1
Q ss_pred CCCeEeccCCccccc
Q 028697 185 KLKILNLCGCVKAAT 199 (205)
Q Consensus 185 ~L~~L~l~~c~~~~~ 199 (205)
+|++|++++|. ++
T Consensus 1 ~L~~Ldls~n~--l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNN--LT 13 (22)
T ss_dssp TESEEEETSSE--ES
T ss_pred CccEEECCCCc--CE
Confidence 47899999984 55
No 82
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.36 E-value=13 Score=31.43 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+.+|.+|++.+.+ -+.+-.+..+|.+|++|.+.|-+
T Consensus 504 m~nL~tLDL~nNd---lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNND---LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCc---hhhCChhhccccceeEEEecCCc
Confidence 4578888886542 23344555678888888888765
No 83
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=63.02 E-value=30 Score=20.64 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=31.5
Q ss_pred cccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh-----cCCCCCeEec
Q 028697 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG-----FCRKLKILNL 191 (205)
Q Consensus 132 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~-----~~~~L~~L~l 191 (205)
.+++.+.+.+...++-+.+..+ +-+.+.+..+ .++.+.+..+.+ ..|+|++|.+
T Consensus 11 ~~~~~l~i~~~~~it~~~Ll~~-----nc~~i~l~~~-~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDLLNM-----NCKKIELWNS-KFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCCEEEEccCCcccHHHHHhc-----CCCEEEEECC-CCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 3566666665556666666543 3345566543 666666666552 4577777654
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=62.69 E-value=5.3 Score=33.61 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=49.2
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
...|+++++|+++.| .++ .+....++|+.|.+++|..++.-. ..+ .++|++|.+++|..+. .
T Consensus 48 ~~~~~~l~~L~Is~c--~L~-----sLP~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~-----s-- 109 (426)
T PRK15386 48 IEEARASGRLYIKDC--DIE-----SLPVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEIS-----G-- 109 (426)
T ss_pred HHHhcCCCEEEeCCC--CCc-----ccCCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCccccc-----c--
Confidence 445799999999987 333 222333479999999987653211 011 2589999999986553 2
Q ss_pred hcCCCCCeEeccC
Q 028697 181 GFCRKLKILNLCG 193 (205)
Q Consensus 181 ~~~~~L~~L~l~~ 193 (205)
-.++|++|++.+
T Consensus 110 -LP~sLe~L~L~~ 121 (426)
T PRK15386 110 -LPESVRSLEIKG 121 (426)
T ss_pred -cccccceEEeCC
Confidence 246788888864
No 85
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=55.74 E-value=27 Score=28.49 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC---CCEEeecCC--CCCCHHHHHHHHhcCCCCCeEecc
Q 028697 118 QLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN---LTRLNISGC--TSFSDHALAYLCGFCRKLKILNLC 192 (205)
Q Consensus 118 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~---L~~L~l~~~--~~it~~~l~~l~~~~~~L~~L~l~ 192 (205)
...+..+..+...-+.++.+++++...|+.+.+..+...+.+ .+...+.+. +..-..++..+.+-|+.|++|++.
T Consensus 184 t~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 184 TDVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred chHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecc
Confidence 344567777777668999999999989999999888876654 333444332 122234455666789999999998
Q ss_pred CCcccccccccc
Q 028697 193 GCVKAATDYALQ 204 (205)
Q Consensus 193 ~c~~~~~d~~~~ 204 (205)
+-- +|-.+|.
T Consensus 264 snF--Itg~gi~ 273 (353)
T KOG3735|consen 264 SNF--ITGLGIM 273 (353)
T ss_pred ccc--cccHHHH
Confidence 865 5655553
No 86
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=54.18 E-value=7.5 Score=27.75 Aligned_cols=81 Identities=23% Similarity=0.228 Sum_probs=46.5
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+..+++++.. -.+.-..+...+|.++.|++... .+++--.+ ++ .++.|++|++..+. +... ...++. +.
T Consensus 53 ~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~n--eisdvPeE-~A-am~aLr~lNl~~N~-l~~~-p~vi~~-L~ 123 (177)
T KOG4579|consen 53 YELTKISLSDNG--FKKFPKKFTIKFPTATTLNLANN--EISDVPEE-LA-AMPALRSLNLRFNP-LNAE-PRVIAP-LI 123 (177)
T ss_pred ceEEEEecccch--hhhCCHHHhhccchhhhhhcchh--hhhhchHH-Hh-hhHHhhhcccccCc-cccc-hHHHHH-HH
Confidence 345666776532 11222356777888999999874 56654333 44 47889999998763 3221 112222 45
Q ss_pred CCCEEeecCC
Q 028697 159 NLTRLNISGC 168 (205)
Q Consensus 159 ~L~~L~l~~~ 168 (205)
+|-+|+..+.
T Consensus 124 ~l~~Lds~~n 133 (177)
T KOG4579|consen 124 KLDMLDSPEN 133 (177)
T ss_pred hHHHhcCCCC
Confidence 6666666543
No 87
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=53.85 E-value=17 Score=28.71 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.1
Q ss_pred CCCCCCCCCHHHHHHHHhcC-ChhHHHHhhccchhhHHh
Q 028697 39 VITEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDA 76 (205)
Q Consensus 39 ~~~~~~~Lp~e~l~~If~~l-~~~~l~~~~~vck~w~~~ 76 (205)
....+.+||.|++..|+..+ +.+++..++.|-.....+
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKL 236 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHH
Confidence 46778999999999999999 889998888876554443
No 88
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=52.66 E-value=34 Score=31.33 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=26.0
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 142 (205)
.+|+.|+++++.- +. +.. ..+++|+.|+++++ .++. .-..+ .++|+.|+++++
T Consensus 325 ~sL~~L~Ls~N~L-t~--LP~--~l~~sL~~L~Ls~N--~L~~-LP~~l---p~~L~~LdLs~N 377 (754)
T PRK15370 325 PGLKTLEAGENAL-TS--LPA--SLPPELQVLDVSKN--QITV-LPETL---PPTITTLDVSRN 377 (754)
T ss_pred ccceeccccCCcc-cc--CCh--hhcCcccEEECCCC--CCCc-CChhh---cCCcCEEECCCC
Confidence 4567777766531 11 110 11357777777765 3331 00111 246777777765
No 89
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.97 E-value=13 Score=31.56 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHhcCChhHHHHhh
Q 028697 41 TEWKDIPMELLLRILSLVDEPTVIVAS 67 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l~~~~l~~~~ 67 (205)
..|..||.|+..+|+++|+..++....
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~ 472 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLI 472 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999999888886543
No 90
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.67 E-value=10 Score=31.56 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHHH
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVIV 65 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~~ 65 (205)
...|..||.|+..+|+++|+..++..
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~~~dL~~ 409 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIGNKDIDI 409 (413)
T ss_pred ccchhcCcHHHHHHHHHHhccchhhh
Confidence 47799999999999999998888754
No 91
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=49.69 E-value=7.3 Score=32.59 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=62.7
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+++|+.|++++.. ++. .-...+.....+++|.+..+ ++. ..-..+.+....|+.|++.++ .++--...++ +..
T Consensus 273 L~~L~~lnlsnN~-i~~-i~~~aFe~~a~l~eL~L~~N--~l~-~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF-~~~ 345 (498)
T KOG4237|consen 273 LPNLRKLNLSNNK-ITR-IEDGAFEGAAELQELYLTRN--KLE-FVSSGMFQGLSGLKTLSLYDN-QITTVAPGAF-QTL 345 (498)
T ss_pred cccceEeccCCCc-cch-hhhhhhcchhhhhhhhcCcc--hHH-HHHHHhhhccccceeeeecCC-eeEEEecccc-ccc
Confidence 5689999998854 332 12234556678899988764 222 222334567789999999886 5554333332 335
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFC 183 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~ 183 (205)
-.|.+|.+-+.+.--+..+..+.+.+
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHH
Confidence 57888888776666677777777543
No 92
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=47.47 E-value=5.6 Score=33.33 Aligned_cols=81 Identities=35% Similarity=0.396 Sum_probs=53.1
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH-HHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
..+.+|+.|++... .+. -+..+...+++|+.|++++. .|++ .++.. ++.|+.|++.++ .+++.. .+.
T Consensus 92 ~~~~~l~~l~l~~n--~i~--~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~----l~~L~~L~l~~N-~i~~~~--~~~ 159 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN--KIE--KIENLLSSLVNLQVLDLSFN-KITKLEGLST----LTLLKELNLSGN-LISDIS--GLE 159 (414)
T ss_pred ccccceeeeecccc--chh--hcccchhhhhcchheecccc-ccccccchhh----ccchhhheeccC-cchhcc--CCc
Confidence 45678889988874 333 23332346899999999986 4543 33333 456999999887 554422 211
Q ss_pred hcCCCCCeEeccCCc
Q 028697 181 GFCRKLKILNLCGCV 195 (205)
Q Consensus 181 ~~~~~L~~L~l~~c~ 195 (205)
.++.|+.++++++.
T Consensus 160 -~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 160 -SLKSLKLLDLSYNR 173 (414)
T ss_pred -cchhhhcccCCcch
Confidence 37788888988876
No 93
>PHA02989 ankyrin repeat protein; Provisional
Probab=46.04 E-value=19 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=24.7
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHHHhhc
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVIVASG 68 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~~~~~ 68 (205)
...|..||.|+..+|+++|+..++.....
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 37799999999999999999888865443
No 94
>PHA02878 ankyrin repeat protein; Provisional
Probab=42.86 E-value=19 Score=30.66 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHhcCChhHHHH
Q 028697 41 TEWKDIPMELLLRILSLVDEPTVIV 65 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l~~~~l~~ 65 (205)
..|..||.|+..+|+++|+..++..
T Consensus 445 ~~w~~lP~Eik~~Il~~l~~~dl~~ 469 (477)
T PHA02878 445 YMWNRLPLEIKHYIMELLDDASLCN 469 (477)
T ss_pred CcHhhCCHHHHHHHHHHcCcHHHHH
Confidence 6799999999999999998888754
No 95
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=42.06 E-value=14 Score=25.02 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCC
Q 028697 96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (205)
Q Consensus 96 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 160 (205)
.+..++..|.+| ..+++.- ..-....+......|+.|.. +++.-..-....+..+...|+.|
T Consensus 27 ~m~~mF~~~~~l-~~~l~~w-~~s~vt~m~~mF~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l 88 (120)
T PF03382_consen 27 DMSYMFYGCTSL-NQDLSNW-DTSNVTNMSGMFAGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL 88 (120)
T ss_pred eHHHHhhcchhc-cCChhhh-cchhheeHHHHHhhhhhcCC-CcccccccccccHHHHHhhhHHc
Confidence 344555566555 2223221 01112234444455566666 55431111122344444455555
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=41.73 E-value=26 Score=16.28 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=6.3
Q ss_pred CCCCEEeecCC
Q 028697 158 PNLTRLNISGC 168 (205)
Q Consensus 158 ~~L~~L~l~~~ 168 (205)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 45666666554
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=41.73 E-value=26 Score=16.28 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=6.3
Q ss_pred CCCCEEeecCC
Q 028697 158 PNLTRLNISGC 168 (205)
Q Consensus 158 ~~L~~L~l~~~ 168 (205)
++|++|+++++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 45666666554
No 98
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=38.73 E-value=34 Score=27.98 Aligned_cols=37 Identities=35% Similarity=0.760 Sum_probs=30.7
Q ss_pred CCCCCCCHHHHHHHHhcCCh--------hHHHHhhccchhhHHhh
Q 028697 41 TEWKDIPMELLLRILSLVDE--------PTVIVASGVCSGWRDAI 77 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l~~--------~~l~~~~~vck~w~~~~ 77 (205)
..|..||.+.|..++.+... +..+.++-||+.|+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 78999999999999998822 25567888999999963
No 99
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=38.44 E-value=20 Score=29.57 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=6.0
Q ss_pred CcccceeeccCC
Q 028697 131 CHDLQDLDLSKS 142 (205)
Q Consensus 131 ~~~L~~L~l~~~ 142 (205)
+++|+.|.++.+
T Consensus 162 l~~L~~L~l~~N 173 (394)
T COG4886 162 LPNLKNLDLSFN 173 (394)
T ss_pred cccccccccCCc
Confidence 445555555543
No 100
>PHA02798 ankyrin-like protein; Provisional
Probab=36.97 E-value=31 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.602 Sum_probs=22.2
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHH
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVI 64 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~ 64 (205)
...|..||.|+-.+|+.+|+..|+.
T Consensus 461 ~~~w~~lP~Eik~~Il~~L~~~dl~ 485 (489)
T PHA02798 461 LSYWNYIPNEIKFKIINNLSNNDIL 485 (489)
T ss_pred cchhhhCCHHHHHHHHHcCChHHHH
Confidence 3679999999999999999888764
No 101
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=31.65 E-value=1.5e+02 Score=20.56 Aligned_cols=34 Identities=9% Similarity=0.295 Sum_probs=16.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccC
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK 141 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 141 (205)
||=+.+.|.. +=++..+..+.+.||+|+.+++..
T Consensus 17 ~nE~~VHlAF---RPSN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 17 PNEEIVHLAF---RPSNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred CCceEEEEEe---cCcchHHHHHHHhCCCCeEEeCCh
Confidence 4444444443 223334445555555555555543
No 102
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=30.77 E-value=4.1 Score=30.13 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=28.2
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCC-CCCHHHHHHHHhcCCCCCEEeecCC
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSF-KLSDRSLYALAHGCPNLTRLNISGC 168 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~ 168 (205)
...||+.|++++. ++++ .-..++ .+++|+.|+++-.. .+...++ .++|.|+.|++++.
T Consensus 54 ~l~nlevln~~nn--qie~-lp~~is-sl~klr~lnvgmnrl~~lprgf----gs~p~levldltyn 112 (264)
T KOG0617|consen 54 ELKNLEVLNLSNN--QIEE-LPTSIS-SLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYN 112 (264)
T ss_pred Hhhhhhhhhcccc--hhhh-cChhhh-hchhhhheecchhhhhcCcccc----CCCchhhhhhcccc
Confidence 3456777777663 3332 222332 35666666665321 1222222 23566666666554
No 103
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=25.27 E-value=58 Score=15.74 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=10.2
Q ss_pred HHhcCCCCCeEeccC
Q 028697 179 LCGFCRKLKILNLCG 193 (205)
Q Consensus 179 l~~~~~~L~~L~l~~ 193 (205)
+...+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 344678888887654
No 104
>PHA02876 ankyrin repeat protein; Provisional
Probab=24.16 E-value=60 Score=29.15 Aligned_cols=26 Identities=23% Similarity=0.616 Sum_probs=22.9
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHHH
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVIV 65 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~~ 65 (205)
...|..||.|+-.+|+++|+..++..
T Consensus 653 ~~~w~~lP~eik~~Il~~l~~~dl~~ 678 (682)
T PHA02876 653 SSDWSKLPPDIKLSILEFIDNNELRK 678 (682)
T ss_pred ccchhhCCHHHHHHHHHHhhhhHHHH
Confidence 46899999999999999998888753
No 105
>PHA03095 ankyrin-like protein; Provisional
Probab=23.71 E-value=76 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHhcCChhHHHHh
Q 028697 44 KDIPMELLLRILSLVDEPTVIVA 66 (205)
Q Consensus 44 ~~Lp~e~l~~If~~l~~~~l~~~ 66 (205)
..||.|+..+|++||+..++...
T Consensus 443 ~~lP~Ei~~~Il~~l~~~dl~~~ 465 (471)
T PHA03095 443 CALPPEIVMRILDFLPDDDLRNL 465 (471)
T ss_pred CCCCHHHHHHHHHhCCHHHHHHH
Confidence 78999999999999999888543
No 106
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.25 E-value=1.2e+02 Score=20.14 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHhcCChhHHHHhhccchh
Q 028697 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSG 72 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~ 72 (205)
..++++|.+++.-|+..++..+|...-.-|..
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~ 33 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPH 33 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCC
Confidence 35788999999999999988888766555433
No 107
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=20.24 E-value=1e+02 Score=14.72 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=6.7
Q ss_pred CCCCEEeecCC
Q 028697 158 PNLTRLNISGC 168 (205)
Q Consensus 158 ~~L~~L~l~~~ 168 (205)
.+|+.|+++..
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00365 2 TNLEELDLSQN 12 (26)
T ss_pred CccCEEECCCC
Confidence 45667777553
Done!