Query 028697
Match_columns 205
No_of_seqs 120 out of 2027
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 02:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 1.2E-21 4.2E-26 156.5 17.4 153 39-195 5-206 (336)
2 2p1m_B Transport inhibitor res 99.8 1.2E-19 4E-24 155.1 14.5 150 41-195 4-167 (594)
3 3ogk_B Coronatine-insensitive 99.7 6.2E-18 2.1E-22 144.4 11.5 148 44-194 14-202 (592)
4 3e4g_A ATP synthase subunit S, 99.7 6.6E-17 2.2E-21 117.3 5.4 94 105-203 61-157 (176)
5 3e4g_A ATP synthase subunit S, 99.6 2.2E-15 7.4E-20 109.3 7.6 106 79-188 61-171 (176)
6 2ast_B S-phase kinase-associat 99.4 2.5E-12 8.4E-17 102.4 12.2 120 78-201 117-238 (336)
7 3ogk_B Coronatine-insensitive 99.4 9E-12 3.1E-16 106.3 13.2 123 78-204 402-531 (592)
8 2p1m_B Transport inhibitor res 99.3 7.4E-12 2.5E-16 106.8 11.4 118 78-202 396-522 (594)
9 3un9_A NLR family member X1; l 99.1 1.7E-10 5.8E-15 93.6 9.2 94 104-203 154-256 (372)
10 1io0_A Tropomodulin; LRR prote 99.1 3E-09 1E-13 77.9 14.8 119 78-202 35-167 (185)
11 3un9_A NLR family member X1; l 99.1 1.4E-09 4.9E-14 88.1 11.8 118 79-203 101-228 (372)
12 2ca6_A RAN GTPase-activating p 99.0 1.1E-08 3.7E-13 83.0 13.5 89 103-195 185-285 (386)
13 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 7.5E-10 2.6E-14 64.2 4.2 40 39-78 5-44 (53)
14 2ca6_A RAN GTPase-activating p 98.9 2.6E-08 8.9E-13 80.7 14.8 118 78-202 186-319 (386)
15 1io0_A Tropomodulin; LRR prote 98.9 1.7E-08 5.7E-13 73.9 11.9 105 94-203 25-140 (185)
16 1z7x_W Ribonuclease inhibitor; 98.9 9.8E-09 3.3E-13 84.8 10.5 118 78-202 27-158 (461)
17 1z7x_W Ribonuclease inhibitor; 98.9 3.5E-08 1.2E-12 81.5 13.5 152 44-202 13-186 (461)
18 2ra8_A Uncharacterized protein 98.7 2.5E-08 8.5E-13 80.5 7.1 120 80-204 194-325 (362)
19 3goz_A Leucine-rich repeat-con 98.6 4E-08 1.4E-12 79.0 6.2 116 80-202 52-183 (362)
20 3goz_A Leucine-rich repeat-con 98.6 6.5E-08 2.2E-12 77.8 6.9 61 133-195 168-236 (362)
21 2je0_A Acidic leucine-rich nuc 98.6 1.5E-08 5.2E-13 71.1 1.9 108 79-195 17-124 (149)
22 2je0_A Acidic leucine-rich nuc 98.5 1.1E-07 3.7E-12 66.7 5.0 107 78-193 41-149 (149)
23 1pgv_A TMD-1, tropomodulin TMD 98.5 7E-07 2.4E-11 65.7 9.2 115 78-195 40-168 (197)
24 1pgv_A TMD-1, tropomodulin TMD 98.5 3.6E-06 1.2E-10 61.9 12.2 106 94-202 30-145 (197)
25 4ezg_A Putative uncharacterize 98.4 1.7E-07 5.8E-12 68.9 2.9 106 78-195 65-170 (197)
26 2ell_A Acidic leucine-rich nuc 98.3 5.7E-08 2E-12 69.5 0.0 110 78-196 48-159 (168)
27 2ell_A Acidic leucine-rich nuc 98.3 2E-08 7E-13 71.9 -2.5 109 78-195 23-131 (168)
28 4ezg_A Putative uncharacterize 98.2 4.4E-07 1.5E-11 66.6 2.4 138 42-200 13-151 (197)
29 4fmz_A Internalin; leucine ric 98.1 3.1E-06 1.1E-10 67.3 5.8 103 78-195 220-322 (347)
30 2e31_A FBS1, F-box only protei 98.1 2.2E-06 7.6E-11 66.8 4.3 38 40-77 48-86 (297)
31 3l2o_B F-box only protein 4; s 98.1 1E-06 3.6E-11 68.2 2.3 37 41-77 3-39 (312)
32 2ra8_A Uncharacterized protein 98.0 2.3E-05 8E-10 63.1 9.4 111 78-194 218-340 (362)
33 4fmz_A Internalin; leucine ric 98.0 5.6E-06 1.9E-10 65.7 5.5 103 78-195 242-344 (347)
34 1wwl_A Monocyte differentiatio 97.9 2.4E-05 8.2E-10 61.4 6.1 64 130-195 171-239 (312)
35 4glp_A Monocyte differentiatio 97.8 1E-05 3.4E-10 63.5 3.1 113 78-195 116-235 (310)
36 1h6t_A Internalin B; cell adhe 97.8 2.1E-05 7.2E-10 61.3 4.6 12 103-114 110-121 (291)
37 1wwl_A Monocyte differentiatio 97.8 9.2E-06 3.2E-10 63.8 2.5 89 103-195 171-264 (312)
38 3v7d_B Cell division control p 97.8 9.5E-06 3.2E-10 66.5 2.4 37 41-77 13-49 (464)
39 1h6t_A Internalin B; cell adhe 97.8 2E-05 6.7E-10 61.4 4.1 101 78-195 67-167 (291)
40 1m9s_A Internalin B; cell inva 97.7 1.4E-05 4.8E-10 68.7 3.3 81 102-195 128-208 (605)
41 1a9n_A U2A', U2A'; complex (nu 97.7 6.3E-06 2.1E-10 59.3 1.0 108 79-195 42-151 (176)
42 1h6u_A Internalin H; cell adhe 97.7 2.3E-05 8E-10 61.5 4.1 14 182-195 193-206 (308)
43 1m9s_A Internalin B; cell inva 97.7 1.7E-05 5.7E-10 68.2 3.2 101 78-195 86-186 (605)
44 1h6u_A Internalin H; cell adhe 97.7 2.7E-05 9.2E-10 61.1 4.0 81 102-195 104-184 (308)
45 2z7x_B TOLL-like receptor 1, v 97.7 1.3E-05 4.5E-10 67.1 2.1 36 80-115 349-384 (520)
46 1a9n_A U2A', U2A'; complex (nu 97.7 5.7E-06 1.9E-10 59.5 -0.1 106 78-195 18-124 (176)
47 4glp_A Monocyte differentiatio 97.6 1.1E-05 3.9E-10 63.2 1.0 112 78-195 144-262 (310)
48 2ovr_B FBW7, F-BOX/WD repeat p 97.6 5.2E-05 1.8E-09 61.9 4.4 38 40-77 16-53 (445)
49 3v47_A TOLL-like receptor 5B a 97.6 4.4E-06 1.5E-10 68.7 -2.4 112 78-195 53-165 (455)
50 1ds9_A Outer arm dynein; leuci 97.5 2.8E-06 9.4E-11 62.4 -3.6 103 78-190 69-180 (198)
51 1o6v_A Internalin A; bacterial 97.5 7.3E-05 2.5E-09 61.9 4.1 14 182-195 351-364 (466)
52 1o6v_A Internalin A; bacterial 97.5 7.5E-05 2.6E-09 61.8 4.2 14 182-195 373-386 (466)
53 2z81_A CD282 antigen, TOLL-lik 97.5 0.00023 7.9E-09 59.8 7.2 108 80-195 311-421 (549)
54 1xeu_A Internalin C; cellular 97.5 4.3E-05 1.5E-09 58.6 2.4 14 102-115 82-95 (263)
55 3rfs_A Internalin B, repeat mo 97.5 1.1E-05 3.8E-10 62.1 -1.0 109 78-195 84-192 (272)
56 3v47_A TOLL-like receptor 5B a 97.4 6.7E-06 2.3E-10 67.6 -2.8 110 79-195 30-140 (455)
57 4fcg_A Uncharacterized protein 97.4 4.3E-06 1.5E-10 66.3 -4.0 12 103-114 148-159 (328)
58 2z66_A Variable lymphocyte rec 97.4 1.9E-06 6.5E-11 67.4 -6.0 14 182-195 221-234 (306)
59 1ozn_A Reticulon 4 receptor; N 97.4 1.6E-05 5.5E-10 61.4 -0.8 88 102-196 150-237 (285)
60 1xeu_A Internalin C; cellular 97.4 4.5E-05 1.5E-09 58.5 1.5 56 78-142 40-95 (263)
61 4fcg_A Uncharacterized protein 97.4 1.1E-05 3.6E-10 64.1 -2.3 88 101-196 202-289 (328)
62 3rfs_A Internalin B, repeat mo 97.4 1.3E-05 4.3E-10 61.8 -1.8 110 78-196 108-217 (272)
63 1ds9_A Outer arm dynein; leuci 97.3 2.1E-05 7.3E-10 57.5 -0.7 105 78-195 47-151 (198)
64 1p22_A F-BOX/WD-repeat protein 97.3 8.8E-05 3E-09 60.5 2.8 37 41-77 9-49 (435)
65 2o6s_A Variable lymphocyte rec 97.3 9.9E-06 3.4E-10 59.7 -3.0 109 78-195 51-159 (208)
66 2z66_A Variable lymphocyte rec 97.3 2.2E-06 7.4E-11 67.0 -7.0 110 79-196 150-260 (306)
67 2z7x_B TOLL-like receptor 1, v 97.3 7.7E-05 2.6E-09 62.4 1.9 107 79-195 324-432 (520)
68 2z63_A TOLL-like receptor 4, v 97.3 2E-06 6.9E-11 72.7 -7.8 13 103-115 419-431 (570)
69 3t6q_A CD180 antigen; protein- 97.3 7.2E-06 2.4E-10 70.0 -4.5 38 156-195 474-511 (606)
70 3o6n_A APL1; leucine-rich repe 97.3 2.6E-05 8.9E-10 63.0 -1.0 86 101-195 244-329 (390)
71 2o6s_A Variable lymphocyte rec 97.3 1E-05 3.5E-10 59.6 -3.2 13 182-194 122-134 (208)
72 1ogq_A PGIP-2, polygalacturona 97.3 1.3E-06 4.4E-11 68.8 -8.6 116 73-195 38-160 (313)
73 2z62_A TOLL-like receptor 4, v 97.3 8.5E-06 2.9E-10 62.7 -3.8 110 78-195 51-160 (276)
74 3t6q_A CD180 antigen; protein- 97.3 5.5E-06 1.9E-10 70.7 -5.5 12 183-194 475-486 (606)
75 3e6j_A Variable lymphocyte rec 97.3 2.6E-05 8.9E-10 58.5 -1.1 108 78-195 63-170 (229)
76 1ozn_A Reticulon 4 receptor; N 97.2 1.2E-05 4.3E-10 62.1 -3.2 37 157-195 176-212 (285)
77 2z63_A TOLL-like receptor 4, v 97.2 4E-06 1.4E-10 70.9 -6.6 110 79-196 421-530 (570)
78 3m19_A Variable lymphocyte rec 97.2 2.2E-05 7.4E-10 59.7 -1.9 87 102-195 104-190 (251)
79 2o6q_A Variable lymphocyte rec 97.2 1.7E-05 5.9E-10 60.9 -2.7 37 157-195 180-216 (270)
80 3rgz_A Protein brassinosteroid 97.2 4.9E-05 1.7E-09 67.0 -0.4 61 130-195 198-258 (768)
81 2o6q_A Variable lymphocyte rec 97.2 2E-05 6.9E-10 60.5 -2.6 87 102-195 106-192 (270)
82 3rw6_A Nuclear RNA export fact 97.2 0.00039 1.3E-08 53.5 4.6 89 99-193 164-260 (267)
83 2v9t_B SLIT homolog 2 protein 97.2 2E-05 6.9E-10 58.8 -2.6 109 78-195 55-163 (220)
84 3m19_A Variable lymphocyte rec 97.2 1.6E-05 5.6E-10 60.4 -3.2 109 78-195 58-166 (251)
85 2z80_A TOLL-like receptor 2, v 97.2 0.00037 1.3E-08 55.4 4.6 62 132-196 249-313 (353)
86 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 3.8E-05 1.3E-09 65.1 -1.3 13 45-57 318-330 (562)
87 3oja_B Anopheles plasmodium-re 97.1 4.7E-05 1.6E-09 65.1 -1.0 86 101-195 250-335 (597)
88 3o6n_A APL1; leucine-rich repe 97.1 2.5E-05 8.5E-10 63.1 -2.6 106 78-195 92-197 (390)
89 3vq2_A TLR4, TOLL-like recepto 97.1 6.2E-06 2.1E-10 70.4 -6.6 12 157-168 496-507 (606)
90 1dce_A Protein (RAB geranylger 97.1 0.00017 5.7E-09 61.5 2.2 104 78-195 440-544 (567)
91 3e6j_A Variable lymphocyte rec 97.1 4.6E-05 1.6E-09 57.2 -1.1 107 79-195 40-146 (229)
92 3vq2_A TLR4, TOLL-like recepto 97.1 5.2E-06 1.8E-10 70.8 -7.1 88 102-195 421-508 (606)
93 2v70_A SLIT-2, SLIT homolog 2 97.1 2.1E-05 7.1E-10 58.7 -3.1 110 78-196 56-165 (220)
94 2o6r_A Variable lymphocyte rec 97.1 2.5E-05 8.6E-10 56.0 -2.6 108 79-195 28-135 (177)
95 2v9t_B SLIT homolog 2 protein 97.1 1.8E-05 6.3E-10 59.0 -3.5 108 79-195 32-139 (220)
96 4g8a_A TOLL-like receptor 4; l 97.1 2.3E-05 7.9E-10 66.8 -3.4 110 78-195 75-184 (635)
97 2z80_A TOLL-like receptor 2, v 97.1 1.6E-05 5.4E-10 63.4 -4.4 111 78-195 75-185 (353)
98 4ecn_A Leucine-rich repeat pro 97.1 0.00034 1.2E-08 62.5 3.8 87 103-195 489-584 (876)
99 4eco_A Uncharacterized protein 97.0 0.00022 7.6E-09 61.5 2.4 111 78-195 205-341 (636)
100 2wfh_A SLIT homolog 2 protein 97.0 4E-05 1.4E-09 56.0 -2.1 106 80-195 32-137 (193)
101 3o53_A Protein LRIM1, AGAP0063 97.0 2.4E-05 8.3E-10 61.5 -3.4 36 157-195 213-248 (317)
102 1ziw_A TOLL-like receptor 3; i 97.0 7.3E-05 2.5E-09 64.7 -1.0 109 78-195 48-156 (680)
103 2id5_A Lingo-1, leucine rich r 97.0 5.1E-05 1.7E-09 62.9 -2.1 13 103-115 102-114 (477)
104 1w8a_A SLIT protein; signaling 97.0 8E-06 2.7E-10 59.7 -6.4 108 80-195 30-137 (192)
105 1xku_A Decorin; proteoglycan, 97.0 5E-05 1.7E-09 59.9 -2.3 36 157-195 239-274 (330)
106 3zyj_A Leucine-rich repeat-con 96.9 3.2E-05 1.1E-09 63.6 -3.6 35 157-195 184-218 (440)
107 3rgz_A Protein brassinosteroid 96.9 3.1E-05 1E-09 68.3 -4.0 38 102-142 220-257 (768)
108 3j0a_A TOLL-like receptor 5; m 96.9 1.1E-05 3.7E-10 71.8 -6.9 112 78-195 47-159 (844)
109 4g8a_A TOLL-like receptor 4; l 96.9 3.3E-05 1.1E-09 65.8 -3.8 108 79-195 52-159 (635)
110 2z62_A TOLL-like receptor 4, v 96.9 2.5E-05 8.6E-10 60.0 -4.3 108 79-195 28-135 (276)
111 4ecn_A Leucine-rich repeat pro 96.9 0.00029 1E-08 63.0 1.9 107 78-195 490-606 (876)
112 3oja_B Anopheles plasmodium-re 96.9 5.5E-05 1.9E-09 64.7 -2.8 106 78-195 98-203 (597)
113 3o53_A Protein LRIM1, AGAP0063 96.9 5.8E-05 2E-09 59.3 -2.5 84 103-195 142-225 (317)
114 3zyi_A Leucine-rich repeat-con 96.9 4.3E-05 1.5E-09 63.0 -3.4 14 182-195 216-229 (452)
115 1dce_A Protein (RAB geranylger 96.9 0.00018 6.1E-09 61.3 0.2 104 78-191 462-567 (567)
116 3zyj_A Leucine-rich repeat-con 96.9 4.2E-05 1.4E-09 62.9 -3.6 37 78-115 159-195 (440)
117 3bz5_A Internalin-J, INLJ; leu 96.8 0.00034 1.2E-08 57.9 1.8 55 131-195 105-159 (457)
118 3bz5_A Internalin-J, INLJ; leu 96.8 0.0004 1.4E-08 57.5 2.3 98 78-195 84-181 (457)
119 1xku_A Decorin; proteoglycan, 96.8 0.00012 4.2E-09 57.6 -1.0 37 157-195 215-251 (330)
120 3zyi_A Leucine-rich repeat-con 96.8 6.1E-05 2.1E-09 62.1 -2.9 37 157-195 265-301 (452)
121 2z81_A CD282 antigen, TOLL-lik 96.8 0.0061 2.1E-07 51.1 9.2 90 101-195 306-398 (549)
122 1ziw_A TOLL-like receptor 3; i 96.7 7E-05 2.4E-09 64.8 -3.7 110 78-195 72-182 (680)
123 3oja_A Leucine-rich immune mol 96.7 7.3E-05 2.5E-09 62.5 -3.4 36 157-195 213-248 (487)
124 4eco_A Uncharacterized protein 96.7 0.00033 1.1E-08 60.4 0.5 108 78-195 248-364 (636)
125 2id5_A Lingo-1, leucine rich r 96.7 0.0001 3.5E-09 61.1 -2.6 14 182-195 318-331 (477)
126 3oja_A Leucine-rich immune mol 96.7 0.00011 3.9E-09 61.3 -2.4 84 103-195 142-225 (487)
127 4b8c_D Glucose-repressible alc 96.6 0.0001 3.6E-09 64.6 -2.8 105 78-195 223-327 (727)
128 1p9a_G Platelet glycoprotein I 96.6 7.7E-05 2.6E-09 58.0 -3.4 87 102-195 97-183 (290)
129 2v70_A SLIT-2, SLIT homolog 2 96.6 9.6E-05 3.3E-09 55.1 -2.9 108 80-195 33-140 (220)
130 3a79_B TLR6, VLRB.59, TOLL-lik 96.6 0.00024 8.2E-09 60.2 -1.0 34 157-195 427-461 (562)
131 1p9a_G Platelet glycoprotein I 96.6 8.2E-05 2.8E-09 57.9 -3.6 86 102-195 121-206 (290)
132 2xot_A Amphoterin-induced prot 96.6 9.4E-05 3.2E-09 59.3 -3.5 110 78-195 63-174 (361)
133 2xot_A Amphoterin-induced prot 96.5 4.4E-05 1.5E-09 61.2 -5.5 107 80-195 40-147 (361)
134 1ogq_A PGIP-2, polygalacturona 96.5 2E-05 6.9E-10 61.9 -7.8 110 78-195 75-185 (313)
135 3rw6_A Nuclear RNA export fact 96.3 0.0028 9.5E-08 48.7 3.4 83 78-165 169-258 (267)
136 3j0a_A TOLL-like receptor 5; m 96.3 0.00024 8.1E-09 63.3 -3.0 86 78-168 72-158 (844)
137 2ft3_A Biglycan; proteoglycan, 96.3 0.00017 5.8E-09 56.9 -3.6 108 79-195 193-305 (332)
138 2wfh_A SLIT homolog 2 protein 96.2 0.00036 1.2E-08 50.9 -1.7 84 104-195 30-113 (193)
139 3g39_A Variable lymphocyte rec 96.0 0.00035 1.2E-08 49.8 -2.6 62 102-168 51-112 (170)
140 2o6r_A Variable lymphocyte rec 96.0 0.00043 1.5E-08 49.4 -2.2 85 104-195 27-111 (177)
141 3g06_A SSPH2 (leucine-rich rep 96.0 0.0032 1.1E-07 54.2 2.9 75 105-195 221-295 (622)
142 3g06_A SSPH2 (leucine-rich rep 96.0 0.0032 1.1E-07 54.2 2.7 14 9-22 4-17 (622)
143 2r9u_A Variable lymphocyte rec 95.9 0.00035 1.2E-08 50.1 -2.9 14 102-115 54-67 (174)
144 2ft3_A Biglycan; proteoglycan, 95.9 0.00039 1.3E-08 54.8 -3.1 83 105-195 193-275 (332)
145 1w8a_A SLIT protein; signaling 95.8 0.00024 8.2E-09 51.7 -4.3 85 105-195 29-113 (192)
146 4b8c_D Glucose-repressible alc 95.7 0.0013 4.4E-08 57.7 -0.8 87 99-195 218-304 (727)
147 3cvr_A Invasion plasmid antige 95.3 0.0086 3E-07 51.0 2.8 11 184-194 160-170 (571)
148 2xwt_C Thyrotropin receptor; s 94.7 0.00033 1.1E-08 52.6 -6.8 13 102-114 77-89 (239)
149 2xwt_C Thyrotropin receptor; s 94.6 0.00039 1.3E-08 52.1 -6.6 108 79-195 31-141 (239)
150 1jl5_A Outer protein YOPM; leu 94.3 0.014 4.8E-07 48.2 1.6 10 80-89 154-163 (454)
151 3cvr_A Invasion plasmid antige 93.7 0.009 3.1E-07 50.9 -0.7 53 131-195 139-191 (571)
152 1jl5_A Outer protein YOPM; leu 93.6 0.029 1E-06 46.2 2.2 10 80-89 196-205 (454)
153 3g39_A Variable lymphocyte rec 93.3 0.0086 2.9E-07 42.4 -1.3 85 104-195 29-113 (170)
154 2r9u_A Variable lymphocyte rec 93.0 0.013 4.4E-07 41.7 -0.7 84 105-195 33-116 (174)
155 2ifg_A High affinity nerve gro 90.3 0.014 4.8E-07 46.0 -3.4 12 103-114 54-65 (347)
156 3sb4_A Hypothetical leucine ri 89.5 0.19 6.3E-06 39.3 2.6 85 99-193 220-306 (329)
157 3sb4_A Hypothetical leucine ri 85.7 0.83 2.8E-05 35.5 4.3 68 119-193 213-283 (329)
158 2ifg_A High affinity nerve gro 84.9 0.1 3.4E-06 41.0 -1.4 88 101-196 27-115 (347)
159 4ay9_X Follicle-stimulating ho 82.6 0.015 5.1E-07 46.1 -7.2 108 79-196 30-140 (350)
160 4gt6_A Cell surface protein; l 81.3 0.29 9.8E-06 39.2 -0.1 56 130-193 309-366 (394)
161 4gt6_A Cell surface protein; l 80.5 0.79 2.7E-05 36.6 2.2 81 100-193 306-387 (394)
162 4fdw_A Leucine rich hypothetic 72.9 0.56 1.9E-05 37.9 -0.7 83 100-194 266-355 (401)
163 4fs7_A Uncharacterized protein 65.5 0.73 2.5E-05 36.8 -1.5 83 101-194 293-376 (394)
164 4h09_A Hypothetical leucine ri 59.4 0.67 2.3E-05 36.7 -2.7 55 130-192 284-341 (379)
165 4h09_A Hypothetical leucine ri 57.0 1.1 3.8E-05 35.4 -1.8 93 101-202 236-328 (379)
166 4fdw_A Leucine rich hypothetic 55.1 2.3 7.7E-05 34.3 -0.3 36 155-193 297-332 (401)
167 3rfe_A Platelet glycoprotein I 44.6 6.8 0.00023 26.0 0.9 48 132-181 31-78 (130)
168 4ay9_X Follicle-stimulating ho 33.9 6.9 0.00023 30.5 -0.6 62 132-196 30-91 (350)
169 2b3g_B Cellular tumor antigen 30.4 19 0.00066 16.5 0.9 14 8-21 13-26 (28)
170 2lz0_A Uncharacterized protein 20.3 35 0.0012 21.4 1.0 38 100-141 15-52 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.2e-21 Score=156.51 Aligned_cols=153 Identities=29% Similarity=0.442 Sum_probs=113.1
Q ss_pred CCCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhhc----------------------------------------
Q 028697 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC---------------------------------------- 78 (205)
Q Consensus 39 ~~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~~---------------------------------------- 78 (205)
+...|.+||+|++.+||+|++..++.+++.|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~ 84 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ 84 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECS
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccc
Confidence 4578999999999999999999999999999999999842
Q ss_pred --------CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHH
Q 028697 79 --------LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSL 150 (205)
Q Consensus 79 --------~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~ 150 (205)
.++++|+++++. ++...+......+++|++|++++| .+++.....+.. +++|+.|++++|..+++.++
T Consensus 85 ~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 85 PLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL--RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp CCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTC--BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHH
T ss_pred cchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCc--ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHH
Confidence 134555555543 455556667777888888888876 577666666654 77777777777666777777
Q ss_pred HHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC-CCCeEeccCCc
Q 028697 151 YALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR-KLKILNLCGCV 195 (205)
Q Consensus 151 ~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~-~L~~L~l~~c~ 195 (205)
..+...+++|++|++++|..+++.++..+...++ +|++|++++|.
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred HHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 6666677777777777766677766666666677 77777777774
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.2e-19 Score=155.09 Aligned_cols=150 Identities=23% Similarity=0.358 Sum_probs=104.6
Q ss_pred CCCCCCCHHHHHHHHhcCC-hhHHHHhhccchhhHHhhcCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCC
Q 028697 41 TEWKDIPMELLLRILSLVD-EPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQL 119 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l~-~~~l~~~~~vck~w~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 119 (205)
..|.+||+|++.+||+|++ .+++.++++|||+|+++..+...++++..+...... .+...+++|++|+++++ +.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~L~~L~L~~~-~~~ 79 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPA---TVIRRFPKVRSVELKGK-PHF 79 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHH---HHHHHCTTCCEEEEECS-CGG
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHH---HHHhhCCCceEEeccCC-Cch
Confidence 5789999999999999998 999999999999999986555567777666544433 34556777777777764 222
Q ss_pred -------------CHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCC
Q 028697 120 -------------EDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL 186 (205)
Q Consensus 120 -------------~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L 186 (205)
.+..+..+...+++|++|+++++ .+++..+..+...+++|++|++++|..+++.++..+...|++|
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 80 ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred hhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 12345556666777777777776 5777777777666777777777777667777777777677777
Q ss_pred CeEeccCCc
Q 028697 187 KILNLCGCV 195 (205)
Q Consensus 187 ~~L~l~~c~ 195 (205)
++|++++|.
T Consensus 159 ~~L~L~~~~ 167 (594)
T 2p1m_B 159 KELDLRESD 167 (594)
T ss_dssp CEEECTTCE
T ss_pred CEEeCcCCc
Confidence 777777775
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=6.2e-18 Score=144.44 Aligned_cols=148 Identities=21% Similarity=0.306 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHhcC-ChhHHHHhhccchhhHHhhcCC-----------------------CceEecCCCCC--------
Q 028697 44 KDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAICLG-----------------------LTHLSLSWCKN-------- 91 (205)
Q Consensus 44 ~~Lp~e~l~~If~~l-~~~~l~~~~~vck~w~~~~~~~-----------------------l~~L~l~~~~~-------- 91 (205)
.+||+|+|.+||+|+ +.+++.+++.|||+|+.+..+. +++|+++++..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 479999999999999 8999999999999999885443 44444433211
Q ss_pred -----CCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcc-cceeeccCCCCCCHHHHHHHHhcCCCCCEEee
Q 028697 92 -----NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNI 165 (205)
Q Consensus 92 -----~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 165 (205)
.....+..+...+++|++|+++.+ .+++..+..++..+++ |++|++.+|..+++.++..+...|++|++|++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 171 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRM--IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESC--BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEEC
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeecc--EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEEC
Confidence 112233444444555555555543 4444444444443333 55555555444444455444444555555555
Q ss_pred cCCCCCCHHH---HHHHHhcCCCCCeEeccCC
Q 028697 166 SGCTSFSDHA---LAYLCGFCRKLKILNLCGC 194 (205)
Q Consensus 166 ~~~~~it~~~---l~~l~~~~~~L~~L~l~~c 194 (205)
++| .+++.+ +..+...+++|++|+++++
T Consensus 172 ~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n 202 (592)
T 3ogk_B 172 EES-SFSEKDGKWLHELAQHNTSLEVLNFYMT 202 (592)
T ss_dssp TTC-EEECCCSHHHHHHHHHCCCCCEEECTTC
T ss_pred ccc-cccCcchhHHHHHHhcCCCccEEEeecc
Confidence 544 232221 3334444555555555444
No 4
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.66 E-value=6.6e-17 Score=117.31 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=76.1
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhc---CCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHG---CPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
.+|++|++++| .++|..+..+. .|++|++|++++|..++|.++..+... +++|++|++++|.+|||.++..++
T Consensus 61 ~~L~~LDLs~~--~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 61 YKIQAIDATDS--CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CCEEEEEEESC--CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred ceEeEEeCcCC--CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 36888888887 58888888874 688888888888888888888888752 567888888888888888888887
Q ss_pred cCCCCCeEeccCCccccccccc
Q 028697 182 FCRKLKILNLCGCVKAATDYAL 203 (205)
Q Consensus 182 ~~~~L~~L~l~~c~~~~~d~~~ 203 (205)
.|++|++|++++|++ +||.++
T Consensus 137 ~~~~L~~L~L~~c~~-Itd~gl 157 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPG-VKEKEK 157 (176)
T ss_dssp GCTTCCEEEEESCTT-CCCHHH
T ss_pred cCCCCCEEECCCCCC-CCchHH
Confidence 588888888888887 887653
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.60 E-value=2.2e-15 Score=109.33 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=92.6
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhc---CcccceeeccCCCCCCHHHHHHHHh
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---CHDLQDLDLSKSFKLSDRSLYALAH 155 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~ 155 (205)
..|++|++++|. +++..+..+ ..|++|++|++++| ..++|..+..++.. +++|++|++++|..|||.++..+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C-~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKC-HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESC-TTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCC-CccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 368999999987 888888766 58999999999998 68999999999873 679999999999999999999986
Q ss_pred cCCCCCEEeecCCCCCCHHH--HHHHHhcCCCCCe
Q 028697 156 GCPNLTRLNISGCTSFSDHA--LAYLCGFCRKLKI 188 (205)
Q Consensus 156 ~~~~L~~L~l~~~~~it~~~--l~~l~~~~~~L~~ 188 (205)
.+++|++|++++|..+|+.+ ...+...+|+++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 59999999999999999976 4555567887653
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=2.5e-12 Score=102.39 Aligned_cols=120 Identities=27% Similarity=0.399 Sum_probs=77.4
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+++|++|+++++. +++.....+. .+++|++|++++| ..+++..+..+...+++|+.|++++|..+++.++..+...+
T Consensus 117 ~~~L~~L~L~~~~-l~~~~~~~l~-~~~~L~~L~L~~~-~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 117 CSKLQNLSLEGLR-LSDPIVNTLA-KNSNLVRLNLSGC-SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp BCCCSEEECTTCB-CCHHHHHHHT-TCTTCSEEECTTC-BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred CCCCCEEeCcCcc-cCHHHHHHHh-cCCCCCEEECCCC-CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 5567777777653 4544443333 4677777777765 35666656665556777777777776567766666666667
Q ss_pred C-CCCEEeecCCC-CCCHHHHHHHHhcCCCCCeEeccCCccccccc
Q 028697 158 P-NLTRLNISGCT-SFSDHALAYLCGFCRKLKILNLCGCVKAATDY 201 (205)
Q Consensus 158 ~-~L~~L~l~~~~-~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~ 201 (205)
+ +|++|++++|. .+++..+..+...+++|++|++++|.. +++.
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~ 238 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-LKND 238 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-CCGG
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc-CCHH
Confidence 7 77777777665 566666666666677777777777764 4444
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.35 E-value=9e-12 Score=106.25 Aligned_cols=123 Identities=25% Similarity=0.300 Sum_probs=95.2
Q ss_pred cCCCceEecCC---CCCCCH----HHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHH
Q 028697 78 CLGLTHLSLSW---CKNNMN----NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSL 150 (205)
Q Consensus 78 ~~~l~~L~l~~---~~~~~~----~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~ 150 (205)
+++|++|++++ +..+++ ..+..+...|++|++|+++.|...+++..+..+...+++|+.|+++++ .+++.++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~ 480 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGL 480 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHH
Confidence 45667777652 333432 456666677888888888665224788888888888889999999886 7888888
Q ss_pred HHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccccccc
Q 028697 151 YALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQ 204 (205)
Q Consensus 151 ~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~~~ 204 (205)
..+...+++|++|++++|. +++.++..++..+++|++|++++|. +++.++.
T Consensus 481 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~--it~~~~~ 531 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR--ASMTGQD 531 (592)
T ss_dssp HHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB--CCTTCTT
T ss_pred HHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc--CCHHHHH
Confidence 8888889999999999984 8999888888889999999999997 6777653
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.33 E-value=7.4e-12 Score=106.77 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=71.8
Q ss_pred cCCCceEecC-----CCCCCC----HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHH
Q 028697 78 CLGLTHLSLS-----WCKNNM----NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDR 148 (205)
Q Consensus 78 ~~~l~~L~l~-----~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 148 (205)
+++|++|+++ +|..++ +..+..+...|++|++|++++ .+++..+..++..+++|+.|++++| .+++.
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~---~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~ 471 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG---LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDL 471 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS---SCCHHHHHHHHHHCTTCCEEEEESC-CSSHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC---cccHHHHHHHHHhchhccEeeccCC-CCcHH
Confidence 3455666665 344444 455555556666666666643 4566666666655666666666665 46666
Q ss_pred HHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccccc
Q 028697 149 SLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA 202 (205)
Q Consensus 149 ~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d~~ 202 (205)
++..+...+++|++|++++| .+++.++..++..+++|++|++++|+ +++.+
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~ 522 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS--VSFGA 522 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSC--CBHHH
T ss_pred HHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCC--CCHHH
Confidence 66666666666777776666 44666666666666667777777665 34444
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=93.59 Aligned_cols=94 Identities=22% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHH---hcCcccceeeccCCCCCCHHHHHHHHh---cCCCCCEEeecCCCCCCHHHHH
Q 028697 104 LTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCTSFSDHALA 177 (205)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~it~~~l~ 177 (205)
+++|++|++++| .+++.....++ ..+++|+.|+++++ .+++.++..++. .+++|++|++++| .+++.+..
T Consensus 154 ~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~ 229 (372)
T 3un9_A 154 QCQITTLRLSNN--PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAAL 229 (372)
T ss_dssp TCCCCEEECCSS--CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHH
T ss_pred CCccceeeCCCC--CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHH
Confidence 455666666554 45554444432 23455666666654 455555544432 3445666666655 56665555
Q ss_pred HHHh---cCCCCCeEeccCCccccccccc
Q 028697 178 YLCG---FCRKLKILNLCGCVKAATDYAL 203 (205)
Q Consensus 178 ~l~~---~~~~L~~L~l~~c~~~~~d~~~ 203 (205)
.++. .+++|++|+++++. +++.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~--i~~~g~ 256 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE--LSSEGR 256 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS--CCHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCC--CCHHHH
Confidence 5543 34666666666665 455543
No 10
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.12 E-value=3e-09 Score=77.87 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=96.4
Q ss_pred cCCCceEecCCCCCCCHHHHHHHH---hcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLA---PKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLY 151 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~ 151 (205)
...+++|+++++..+.++....++ ...++|++|+++++ .+++.....++. ..++|+.|+++++ .++++++.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n--~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT--RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS--CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC--CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 567899999987467877665554 45789999999997 899988776654 4578999999997 89999988
Q ss_pred HHHhc---CCCCCEEee--cCCCCCCHHHHHHHHh---cCCCCCeEeccCCcccccccc
Q 028697 152 ALAHG---CPNLTRLNI--SGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYA 202 (205)
Q Consensus 152 ~l~~~---~~~L~~L~l--~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~ 202 (205)
.++.. .+.|++|++ +++ .+++++...++. .++.|++|+++++. +++.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~--i~~~~ 167 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ--QGPRL 167 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS--HHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC--CChHH
Confidence 88754 568999999 665 999999777664 56899999999987 66654
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=1.4e-09 Score=88.11 Aligned_cols=118 Identities=23% Similarity=0.287 Sum_probs=98.4
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh----cCcccceeeccCCCCCCHHHHHHHH
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN----SCHDLQDLDLSKSFKLSDRSLYALA 154 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~ 154 (205)
..+++|+++++. +++..+..+...+++|++|++++| .+++.....++. .+++|+.|++++| .+++.++..++
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n--~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN--SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS--CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC--CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHH
Confidence 589999999875 788888888888889999999997 899888777754 3578999999998 79988877765
Q ss_pred ---hcCCCCCEEeecCCCCCCHHHHHHHH---hcCCCCCeEeccCCccccccccc
Q 028697 155 ---HGCPNLTRLNISGCTSFSDHALAYLC---GFCRKLKILNLCGCVKAATDYAL 203 (205)
Q Consensus 155 ---~~~~~L~~L~l~~~~~it~~~l~~l~---~~~~~L~~L~l~~c~~~~~d~~~ 203 (205)
..+++|++|+++++ .+++.++..++ ..+++|++|++++|. ++|.+.
T Consensus 177 ~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~--i~~~g~ 228 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG--AGDTAA 228 (372)
T ss_dssp HHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC--CCHHHH
T ss_pred HHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC--CCHHHH
Confidence 45789999999987 79999887776 457899999999997 677653
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.97 E-value=1.1e-08 Score=83.00 Aligned_cols=89 Identities=25% Similarity=0.334 Sum_probs=36.4
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHHHh----cCcccceeeccCCCCCCHHHHHHHH---hcCCCCCEEeecCCCCCCHHH
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAIAN----SCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDHA 175 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~it~~~ 175 (205)
.+++|++|++++| .+++..+..+.. .+++|+.|+++++ .+++.+...+. ..+++|++|++++| .+++.+
T Consensus 185 ~~~~L~~L~L~~n--~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 260 (386)
T 2ca6_A 185 SHRLLHTVKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARG 260 (386)
T ss_dssp HCTTCCEEECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHH
T ss_pred hCCCcCEEECcCC--CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhh
Confidence 4444555555443 444433333222 3344444444443 34433332222 23344444444443 344443
Q ss_pred HHHHHhc-----CCCCCeEeccCCc
Q 028697 176 LAYLCGF-----CRKLKILNLCGCV 195 (205)
Q Consensus 176 l~~l~~~-----~~~L~~L~l~~c~ 195 (205)
...++.. +++|++|++++|.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCc
Confidence 3333321 3444444444443
No 13
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.95 E-value=7.5e-10 Score=64.19 Aligned_cols=40 Identities=35% Similarity=0.643 Sum_probs=34.3
Q ss_pred CCCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhhc
Q 028697 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (205)
Q Consensus 39 ~~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~~ 78 (205)
....|.+||+|++.+||+|++..++.+++.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 3467899999999999999999999999999999999853
No 14
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.94 E-value=2.6e-08 Score=80.72 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=90.7
Q ss_pred cCCCceEecCCCCCCCHHHHHHH----HhcCCCccEEEecCCCCCCCHHHHHHHH---hcCcccceeeccCCCCCCHHHH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSL----APKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSL 150 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~l~~~~~ 150 (205)
+..|++|+++++. +++..+..+ ...+++|+.|+++++ .+++.....+. ..+++|+.|+++++ .+++.+.
T Consensus 186 ~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~ 261 (386)
T 2ca6_A 186 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN--TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGA 261 (386)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS--CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHH
T ss_pred CCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC--CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhH
Confidence 4578899998864 666554443 448899999999997 78765554443 46789999999998 7999887
Q ss_pred HHHHhc-----CCCCCEEeecCCCCCCHHHHHHHH----hcCCCCCeEeccCCcccccccc
Q 028697 151 YALAHG-----CPNLTRLNISGCTSFSDHALAYLC----GFCRKLKILNLCGCVKAATDYA 202 (205)
Q Consensus 151 ~~l~~~-----~~~L~~L~l~~~~~it~~~l~~l~----~~~~~L~~L~l~~c~~~~~d~~ 202 (205)
..+... +++|++|++++| .+++.++..+. ..+++|++|++++|. +++.+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~--l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR--FSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB--SCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc--CCcch
Confidence 776653 799999999997 89997555554 458999999999997 45443
No 15
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.93 E-value=1.7e-08 Score=73.86 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=86.4
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHHHHHh---cCCCCCEEeecC
Q 028697 94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISG 167 (205)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~ 167 (205)
.+.+..+...+++|++|+++.+ ..+++.....++. .+++|+.|+++++ .+++++...++. ..+.|++|++++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n-~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 4567778889999999999985 3788888777765 4578999999997 899999877654 457999999998
Q ss_pred CCCCCHHHHHHHHh---cCCCCCeEec--cCCccccccccc
Q 028697 168 CTSFSDHALAYLCG---FCRKLKILNL--CGCVKAATDYAL 203 (205)
Q Consensus 168 ~~~it~~~l~~l~~---~~~~L~~L~l--~~c~~~~~d~~~ 203 (205)
+ .+++.++..++. .++.|++|++ +++. ++|.+.
T Consensus 103 N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~--i~~~g~ 140 (185)
T 1io0_A 103 N-FISGSGILALVEALQSNTSLIELRIDNQSQP--LGNNVE 140 (185)
T ss_dssp S-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSC--CCHHHH
T ss_pred C-cCCHHHHHHHHHHHHhCCCceEEEecCCCCC--CCHHHH
Confidence 7 999999888875 4678999999 6665 788764
No 16
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=9.8e-09 Score=84.85 Aligned_cols=118 Identities=23% Similarity=0.252 Sum_probs=91.9
Q ss_pred cCCCceEecCCCCCCCHH---HHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCc----ccceeeccCCCCCCHHHH
Q 028697 78 CLGLTHLSLSWCKNNMNN---LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH----DLQDLDLSKSFKLSDRSL 150 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~l~~~~~ 150 (205)
++++++|++++|. +++. .+......+++|++|+++++ .+++..+..+...++ +|++|+++++ .+++.++
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~ 102 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN--ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 102 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC--CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC--cCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence 6788999999876 5554 34456667899999999986 788888888887776 6999999997 7887554
Q ss_pred HHH---HhcCCCCCEEeecCCCCCCHHHHHHHHhc----CCCCCeEeccCCcccccccc
Q 028697 151 YAL---AHGCPNLTRLNISGCTSFSDHALAYLCGF----CRKLKILNLCGCVKAATDYA 202 (205)
Q Consensus 151 ~~l---~~~~~~L~~L~l~~~~~it~~~l~~l~~~----~~~L~~L~l~~c~~~~~d~~ 202 (205)
..+ ...+++|++|+++++ .+++.++..+... .++|++|++++|. +++.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~ 158 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAAS 158 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGG
T ss_pred HHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHH
Confidence 443 356789999999887 6998888887764 4579999999996 56644
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.88 E-value=3.5e-08 Score=81.48 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHhcCC-hh--HHHHhhccchhhHHh-----hcCCCceEecCCCCCCCHHHHHHHHhcCC----CccEEE
Q 028697 44 KDIPMELLLRILSLVD-EP--TVIVASGVCSGWRDA-----ICLGLTHLSLSWCKNNMNNLVLSLAPKLT----KLQTLV 111 (205)
Q Consensus 44 ~~Lp~e~l~~If~~l~-~~--~l~~~~~vck~w~~~-----~~~~l~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~ 111 (205)
..+.++.+..+|..++ .+ ++..+......+..+ .++.+++|+++++. +++.....+...++ +|++|+
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEE
Confidence 3466666666665442 11 211222222222222 15789999999854 67767777777776 799999
Q ss_pred ecCCCCCCCHHHHH---HHHhcCcccceeeccCCCCCCHHHHHHHHhc----CCCCCEEeecCCCCCCHHHHHHHH---h
Q 028697 112 LRQDKPQLEDNAVE---AIANSCHDLQDLDLSKSFKLSDRSLYALAHG----CPNLTRLNISGCTSFSDHALAYLC---G 181 (205)
Q Consensus 112 l~~~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~it~~~l~~l~---~ 181 (205)
+++| .+++..+. .....+++|+.|+++++ .+++.++..+... .++|++|++++| .+++.+...+. .
T Consensus 92 L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~ 167 (461)
T 1z7x_W 92 LQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLR 167 (461)
T ss_dssp CTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHH
T ss_pred ccCC--CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHh
Confidence 9997 77764433 33356789999999997 6988888877654 457999999998 88876654444 4
Q ss_pred cCCCCCeEeccCCcccccccc
Q 028697 182 FCRKLKILNLCGCVKAATDYA 202 (205)
Q Consensus 182 ~~~~L~~L~l~~c~~~~~d~~ 202 (205)
.+++|++|+++++. +++.+
T Consensus 168 ~~~~L~~L~L~~n~--i~~~~ 186 (461)
T 1z7x_W 168 AKPDFKELTVSNND--INEAG 186 (461)
T ss_dssp HCTTCCEEECCSSB--CHHHH
T ss_pred hCCCCCEEECcCCC--cchHH
Confidence 68999999999987 56654
No 18
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=2.5e-08 Score=80.51 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=79.9
Q ss_pred CCceEecCCCCCCCHHHHHHHHh-cCCCccEEEecCCCCC-CCH---HHHHHHH--hcCcccceeeccCCCCCCHHHHHH
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAP-KLTKLQTLVLRQDKPQ-LED---NAVEAIA--NSCHDLQDLDLSKSFKLSDRSLYA 152 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~-~~~---~~l~~l~--~~~~~L~~L~l~~~~~l~~~~~~~ 152 (205)
+|++|++..+ .++.+.+..+.. .+|+|++|+|+.+... ..+ ..+..+. ..+|+|+.|.+.+| .+++++...
T Consensus 194 ~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~ 271 (362)
T 2ra8_A 194 NLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEM 271 (362)
T ss_dssp TCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHH
T ss_pred CCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHH
Confidence 4555555443 255666666654 6888999888531000 011 1122211 24788999999876 677776666
Q ss_pred HHh--cCCCCCEEeecCCCCCCHHHHHHHHh---cCCCCCeEeccCCcccccccccc
Q 028697 153 LAH--GCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYALQ 204 (205)
Q Consensus 153 l~~--~~~~L~~L~l~~~~~it~~~l~~l~~---~~~~L~~L~l~~c~~~~~d~~~~ 204 (205)
+.. .+|+|++|+++.+ .+++.+...+.. .+++|++|++++|. ++|++++
T Consensus 272 la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~--i~d~~~~ 325 (362)
T 2ra8_A 272 FLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY--LSDEMKK 325 (362)
T ss_dssp HHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB--CCHHHHH
T ss_pred HHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc--CCHHHHH
Confidence 664 4689999999775 899998888874 47999999999886 7887654
No 19
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.63 E-value=4e-08 Score=79.04 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=74.8
Q ss_pred CCceEecCCCCCCC---HHHHHHHHhcC-CCccEEEecCCCCCCCHH---HHHHHHhcC-cccceeeccCCCCCCHHHHH
Q 028697 80 GLTHLSLSWCKNNM---NNLVLSLAPKL-TKLQTLVLRQDKPQLEDN---AVEAIANSC-HDLQDLDLSKSFKLSDRSLY 151 (205)
Q Consensus 80 ~l~~L~l~~~~~~~---~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~---~l~~l~~~~-~~L~~L~l~~~~~l~~~~~~ 151 (205)
.+++|+++++. ++ ...+..+.... ++|++|+++++ .+++. .+......+ ++|+.|+++++ .+++.+..
T Consensus 52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~ 127 (362)
T 3goz_A 52 SVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN--FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSS 127 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS--CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHH
T ss_pred ceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCC--cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHH
Confidence 78888888764 33 33344444444 88999999886 45433 333333344 78999999887 56655554
Q ss_pred HHHh---c-CCCCCEEeecCCCCCCHHHHHHHHh---cCC-CCCeEeccCCcccccccc
Q 028697 152 ALAH---G-CPNLTRLNISGCTSFSDHALAYLCG---FCR-KLKILNLCGCVKAATDYA 202 (205)
Q Consensus 152 ~l~~---~-~~~L~~L~l~~~~~it~~~l~~l~~---~~~-~L~~L~l~~c~~~~~d~~ 202 (205)
.+.. . +++|++|+++++ .+++.+...+.. ..+ +|++|++++|. +++.+
T Consensus 128 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~ 183 (362)
T 3goz_A 128 EFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN--LASKN 183 (362)
T ss_dssp HHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSC
T ss_pred HHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC--Cchhh
Confidence 4433 3 468999999887 777655554432 344 89999999886 56544
No 20
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.61 E-value=6.5e-08 Score=77.81 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=28.0
Q ss_pred ccceeeccCCCCCCHHH---HHHHHhcC-CCCCEEeecCCCCCCHHHHHHHHh----cCCCCCeEeccCCc
Q 028697 133 DLQDLDLSKSFKLSDRS---LYALAHGC-PNLTRLNISGCTSFSDHALAYLCG----FCRKLKILNLCGCV 195 (205)
Q Consensus 133 ~L~~L~l~~~~~l~~~~---~~~l~~~~-~~L~~L~l~~~~~it~~~l~~l~~----~~~~L~~L~l~~c~ 195 (205)
+|+.|+++++ .+++.+ +......+ ++|++|+++++ .+++.+...+.. .+++|++|+++++.
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 5555555554 333222 22222333 25666666554 455433333322 23456666666654
No 21
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.57 E-value=1.5e-08 Score=71.09 Aligned_cols=108 Identities=27% Similarity=0.350 Sum_probs=61.4
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
.++++|+++++. +++..+......+++|+.|+++++ .++.. ..+ ..+++|+.|+++++ .++.. +......++
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~--~~~-~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV--GLTSI--ANL-PKLNKLKKLELSDN-RVSGG-LEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS--CCCCC--TTC-CCCTTCCEEECCSS-CCCSC-THHHHHHCT
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC--CCCCc--hhh-hcCCCCCEEECCCC-cccch-HHHHhhhCC
Confidence 456777777654 221122233456677777777775 34332 222 34667777777775 44432 223334567
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++..........+++|++|+++++.
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~ 124 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE 124 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc
Confidence 7777777776 56653322333467777777777775
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.51 E-value=1.1e-07 Score=66.68 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=76.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..++++|+++++.- +.- .....+++|+.|+++++ .++.. +......+++|+.|+++++ .+++.........+
T Consensus 41 l~~L~~L~l~~n~l-~~~---~~~~~l~~L~~L~Ls~n--~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l 112 (149)
T 2je0_A 41 FEELEFLSTINVGL-TSI---ANLPKLNKLKKLELSDN--RVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL 112 (149)
T ss_dssp CTTCCEEECTTSCC-CCC---TTCCCCTTCCEEECCSS--CCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred cCCCcEEECcCCCC-CCc---hhhhcCCCCCEEECCCC--cccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence 46789999998753 321 44567899999999997 55542 3344456899999999997 67764332334678
Q ss_pred CCCCEEeecCCCCCCHHHH--HHHHhcCCCCCeEeccC
Q 028697 158 PNLTRLNISGCTSFSDHAL--AYLCGFCRKLKILNLCG 193 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l--~~l~~~~~~L~~L~l~~ 193 (205)
++|++|+++++ .++...- ......+++|++|++++
T Consensus 113 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999987 6655432 23445799999999864
No 23
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.50 E-value=7e-07 Score=65.68 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=89.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHh---cCCCccEEEecCCCCCCCHHHHHHHHh---cCcccceeeccCCCCCCHHHHH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAP---KLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDLDLSKSFKLSDRSLY 151 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~ 151 (205)
...|++|++++...+.++....++. .-..|+.|+|+.+ .+.|.....|+. ....|++|+|+.+ .++++++.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n--~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT--AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS--CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC--CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 4578999998765688877665554 4468999999997 899988766654 4478999999997 89999999
Q ss_pred HHHhcC---CCCCEEeecCCC--CCCHHHHHHHH---hcCCCCCeEeccCCc
Q 028697 152 ALAHGC---PNLTRLNISGCT--SFSDHALAYLC---GFCRKLKILNLCGCV 195 (205)
Q Consensus 152 ~l~~~~---~~L~~L~l~~~~--~it~~~l~~l~---~~~~~L~~L~l~~c~ 195 (205)
.+++.+ +.|++|+++++. .+++++...++ ..-+.|++|++..+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 988765 469999997642 57887765555 456889999998664
No 24
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.46 E-value=3.6e-06 Score=61.86 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhc---CcccceeeccCCCCCCHHHHHHHHh---cCCCCCEEeecC
Q 028697 94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---CHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISG 167 (205)
Q Consensus 94 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~ 167 (205)
++.+..+...-+.|++|+++.+ ..+.+.....++.. ...|+.|+|+++ .++|.+...++. .-+.|++|++++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 4567777777888999999863 27888877777653 357999999987 899888766654 346899999977
Q ss_pred CCCCCHHHHHHHHhcC---CCCCeEeccCCcc-cccccc
Q 028697 168 CTSFSDHALAYLCGFC---RKLKILNLCGCVK-AATDYA 202 (205)
Q Consensus 168 ~~~it~~~l~~l~~~~---~~L~~L~l~~c~~-~~~d~~ 202 (205)
+ .|++.+..+++..+ +.|++|+++++.+ .++|++
T Consensus 108 N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 108 N-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp S-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred C-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 6 89999999888644 6799999987654 466654
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.36 E-value=1.7e-07 Score=68.92 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=55.7
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..++++|+++++. +..- .....+++|++|+++++ .+++.....+. .+++|+.|+++++ .+++.....+ ..+
T Consensus 65 l~~L~~L~l~~n~-~~~~---~~l~~l~~L~~L~l~~n--~l~~~~~~~l~-~l~~L~~L~Ls~n-~i~~~~~~~l-~~l 135 (197)
T 4ezg_A 65 AHNIKDLTINNIH-ATNY---NPISGLSNLERLRIMGK--DVTSDKIPNLS-GLTSLTLLDISHS-AHDDSILTKI-NTL 135 (197)
T ss_dssp CTTCSEEEEESCC-CSCC---GGGTTCTTCCEEEEECT--TCBGGGSCCCT-TCTTCCEEECCSS-BCBGGGHHHH-TTC
T ss_pred CCCCCEEEccCCC-CCcc---hhhhcCCCCCEEEeECC--ccCcccChhhc-CCCCCCEEEecCC-ccCcHhHHHH-hhC
Confidence 3456666666552 2211 12345666666666664 44433333332 3566777777665 5554333333 346
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|++++|..+++-. . ...+++|++|++++|.
T Consensus 136 ~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 136 PKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFDG 170 (197)
T ss_dssp SSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTBC
T ss_pred CCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCCC
Confidence 677777776653244421 2 2356667777776665
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.34 E-value=5.7e-08 Score=69.51 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=67.8
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
.++|++|+++++. +..- .....+++|+.|+++++ .++.. +..+...+++|+.|+++++ .+++.........+
T Consensus 48 l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l 119 (168)
T 2ell_A 48 FVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN--RIFGG-LDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKL 119 (168)
T ss_dssp GGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC--CCCSC-CCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred CCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC--cCchH-HHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence 3456778877764 2221 34456778888888876 44432 2333445788888888886 55542211223457
Q ss_pred CCCCEEeecCCCCCCHHHH--HHHHhcCCCCCeEeccCCcc
Q 028697 158 PNLTRLNISGCTSFSDHAL--AYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l--~~l~~~~~~L~~L~l~~c~~ 196 (205)
++|++|+++++ .++.... ......+++|++|++++|..
T Consensus 120 ~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 120 ECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 88888888876 4543321 12445788888888888763
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.33 E-value=2e-08 Score=71.87 Aligned_cols=109 Identities=28% Similarity=0.328 Sum_probs=76.5
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...+++|+++++. +++..+......+++|+.|+++++ .++.. ..+ ..+++|+.|+++++ .++.. +..+...+
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n--~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV--GLISV--SNL-PKLPKLKKLELSEN-RIFGG-LDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS--CCCCC--SSC-CCCSSCCEEEEESC-CCCSC-CCHHHHHC
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC--CCCCh--hhh-ccCCCCCEEECcCC-cCchH-HHHHHhhC
Confidence 3678999999875 332222334567899999999997 45532 222 45789999999997 55442 33344568
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .+++.........+++|++|+++++.
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 99999999997 67663221223478999999999997
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.22 E-value=4.4e-07 Score=66.63 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=91.9
Q ss_pred CCCCCCHHHHHHHHhcC-ChhHHHHhhccchhhHHhhcCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCC
Q 028697 42 EWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120 (205)
Q Consensus 42 ~~~~Lp~e~l~~If~~l-~~~~l~~~~~vck~w~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 120 (205)
....+|+..+....... .... ..-+.. .-...+++|+++++....-. -...+++|++|+++++ .++
T Consensus 13 ~~~~~pd~~~~~~~~~~~~~~~---~~~i~~----~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~~n--~~~ 79 (197)
T 4ezg_A 13 DNVNIPDSTFKAYLNGLLGQSS---TANITE----AQMNSLTYITLANINVTDLT----GIEYAHNIKDLTINNI--HAT 79 (197)
T ss_dssp SBCCCCCHHHHHHHHHHHTCCT---TCCCBH----HHHHTCCEEEEESSCCSCCT----TGGGCTTCSEEEEESC--CCS
T ss_pred ceeecCcHHHHHHHHHHhCCCc---cccCCh----hhcCCccEEeccCCCccChH----HHhcCCCCCEEEccCC--CCC
Confidence 45678888877655422 1100 000111 12457899999876432211 2567899999999997 444
Q ss_pred HHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcccccc
Q 028697 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD 200 (205)
Q Consensus 121 ~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~~~~d 200 (205)
+- ..+ ..+++|+.|+++++ .+++.....+ ..+++|++|+++++ .+++.....+. .+++|++|++++|.. +++
T Consensus 80 ~~--~~l-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~-i~~ 151 (197)
T 4ezg_A 80 NY--NPI-SGLSNLERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGA-ITD 151 (197)
T ss_dssp CC--GGG-TTCTTCCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTB-CCC
T ss_pred cc--hhh-hcCCCCCEEEeECC-ccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCC-ccc
Confidence 32 233 35899999999996 6765443333 35899999999987 88876666665 799999999999974 443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.13 E-value=3.1e-06 Score=67.25 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=62.5
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...+++|+++++.-.... . ...+++|++|+++++ .+++ +.. ...+++|+.|+++++ .+++. .....+
T Consensus 220 ~~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n--~l~~--~~~-~~~l~~L~~L~l~~n-~l~~~---~~~~~l 286 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLS---P-LANLSQLTWLEIGTN--QISD--INA-VKDLTKLKMLNVGSN-QISDI---SVLNNL 286 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS--CCCC--CGG-GTTCTTCCEEECCSS-CCCCC---GGGGGC
T ss_pred CCcCCEEEccCCccCCCc---c-hhcCCCCCEEECCCC--ccCC--Chh-HhcCCCcCEEEccCC-ccCCC---hhhcCC
Confidence 346677777765422211 1 556777777777775 3332 112 235677777777776 44432 123457
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|++++| .++......+. .+++|++|++++|.
T Consensus 287 ~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 287 SQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNH 322 (347)
T ss_dssp TTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSS
T ss_pred CCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCc
Confidence 77888888776 66665555554 57778888888776
No 30
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.10 E-value=2.2e-06 Score=66.80 Aligned_cols=38 Identities=24% Similarity=0.590 Sum_probs=35.3
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHH-HhhccchhhHHhh
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVI-VASGVCSGWRDAI 77 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~-~~~~vck~w~~~~ 77 (205)
...+..||+|++..||.||+..+++ +++.|||+|+.++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 4578899999999999999999999 9999999999984
No 31
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=1e-06 Score=68.23 Aligned_cols=37 Identities=16% Similarity=0.408 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
..+.+||+|++.+||+||+.+++++++.|||+|+.++
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999985
No 32
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=2.3e-05 Score=63.10 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=81.6
Q ss_pred cCCCceEecCCCCC-----CCHHHHHHHH--hcCCCccEEEecCCCCCCCHHHHHHHHh--cCcccceeeccCCCCCCHH
Q 028697 78 CLGLTHLSLSWCKN-----NMNNLVLSLA--PKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDLDLSKSFKLSDR 148 (205)
Q Consensus 78 ~~~l~~L~l~~~~~-----~~~~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~l~~~ 148 (205)
+++|++|+|+.... .....+..+. ..+|+|+.|.++.| .+++.....++. .+++|+.|+++.+ .+++.
T Consensus 218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~--~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~ 294 (362)
T 2ra8_A 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA--EEQNVVVEMFLESDILPQLETMDISAG-VLTDE 294 (362)
T ss_dssp CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC--TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHH
T ss_pred CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC--CCchHHHHHHHhCccCCCCCEEECCCC-CCChH
Confidence 68899999853211 1111122222 25899999999987 777776666664 5689999999876 89999
Q ss_pred HHHHHHh---cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 028697 149 SLYALAH---GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194 (205)
Q Consensus 149 ~~~~l~~---~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c 194 (205)
+...+.. .+++|+.|++++| .+++.++.++.+.+ ...++++.-
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSB
T ss_pred HHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCC
Confidence 9888764 4799999999887 89999999999755 355677653
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.03 E-value=5.6e-06 Score=65.72 Aligned_cols=103 Identities=23% Similarity=0.242 Sum_probs=76.4
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
++.+++|+++++.-... .....+++|++|+++++ .+++. .. ...+++|+.|+++++ .+++.....+. .+
T Consensus 242 l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n--~l~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l 310 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSN--QISDI--SV-LNNLSQLNSLFLNNN-QLGNEDMEVIG-GL 310 (347)
T ss_dssp CTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS--CCCCC--GG-GGGCTTCSEEECCSS-CCCGGGHHHHH-TC
T ss_pred CCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCC--ccCCC--hh-hcCCCCCCEEECcCC-cCCCcChhHhh-cc
Confidence 56899999998753221 23567899999999997 45542 22 356899999999998 67665555443 58
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|++++| .++... . ...+++|++|++++|+
T Consensus 311 ~~L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 311 TNLTTLFLSQN-HITDIR--P-LASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSS-SCCCCG--G-GGGCTTCSEESSSCC-
T ss_pred ccCCEEEccCC-cccccc--C-hhhhhccceeehhhhc
Confidence 99999999998 566532 2 4479999999999987
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.85 E-value=2.4e-05 Score=61.43 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=36.4
Q ss_pred cCcccceeeccCCCCCCHH-HHH-HH-HhcCCCCCEEeecCCCCCC--HHHHHHHHhcCCCCCeEeccCCc
Q 028697 130 SCHDLQDLDLSKSFKLSDR-SLY-AL-AHGCPNLTRLNISGCTSFS--DHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 130 ~~~~L~~L~l~~~~~l~~~-~~~-~l-~~~~~~L~~L~l~~~~~it--~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
.+++|+.|+++++ .+... .+. .+ ...+++|++|+++++ .++ ......+...+++|++|+++++.
T Consensus 171 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 171 VFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred cCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 3566777777765 33332 221 11 145677777777776 565 22333444466777777777765
No 35
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.80 E-value=1e-05 Score=63.50 Aligned_cols=113 Identities=21% Similarity=0.161 Sum_probs=58.3
Q ss_pred cCCCceEecCCCCCCCH--HHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH-HHHHHH-
Q 028697 78 CLGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYAL- 153 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l- 153 (205)
...+++|+++++..... ..-..-...+++|++|+++++ .++......+ ..+++|+.|+++++ .+.. .++...
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 191 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA--HSPAFSCEQV-RAFPALTSLDLSDN-PGLGERGLMAAL 191 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC--SSCCCCTTSC-CCCTTCCEEECCSC-TTCHHHHHHTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC--CcchhhHHHh-ccCCCCCEEECCCC-CCccchhhhHHH
Confidence 34567777766542210 000011225677777777775 3322111111 24567777777775 3333 222211
Q ss_pred -HhcCCCCCEEeecCCCCCC--HHHHHHHHhcCCCCCeEeccCCc
Q 028697 154 -AHGCPNLTRLNISGCTSFS--DHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 154 -~~~~~~L~~L~l~~~~~it--~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
...+++|++|+++++ .++ ......+...+++|++|+++++.
T Consensus 192 ~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 192 CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 134677777777776 555 23233344466777777777765
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.77 E-value=2.1e-05 Score=61.26 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=5.4
Q ss_pred cCCCccEEEecC
Q 028697 103 KLTKLQTLVLRQ 114 (205)
Q Consensus 103 ~~~~L~~L~l~~ 114 (205)
.+++|++|++++
T Consensus 110 ~l~~L~~L~L~~ 121 (291)
T 1h6t_A 110 DLKKLKSLSLEH 121 (291)
T ss_dssp TCTTCCEEECTT
T ss_pred cCCCCCEEECCC
Confidence 344444444444
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.77 E-value=9.2e-06 Score=63.81 Aligned_cols=89 Identities=27% Similarity=0.231 Sum_probs=38.1
Q ss_pred cCCCccEEEecCCCCCCCHH--HHHHHH-hcCcccceeeccCCCCCCH--HHHHHHHhcCCCCCEEeecCCCCCCHHHHH
Q 028697 103 KLTKLQTLVLRQDKPQLEDN--AVEAIA-NSCHDLQDLDLSKSFKLSD--RSLYALAHGCPNLTRLNISGCTSFSDHALA 177 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~--~l~~l~-~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~it~~~l~ 177 (205)
.+++|++|+++++ .+... ....+. ..+++|+.|+++++ .++. .....+...+++|++|+++++ .++...-.
T Consensus 171 ~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 246 (312)
T 1wwl_A 171 VFPALSTLDLSDN--PELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGA 246 (312)
T ss_dssp CCSSCCEEECCSC--TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCC
T ss_pred cCCCCCEEECCCC--CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccch
Confidence 4555666666554 33321 111111 23455666666554 3431 122233334555666666554 33332100
Q ss_pred HHHhcCCCCCeEeccCCc
Q 028697 178 YLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 178 ~l~~~~~~L~~L~l~~c~ 195 (205)
.....+++|++|+++++.
T Consensus 247 ~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp SCCCCCTTCCEEECTTSC
T ss_pred hhhhhcCCCCEEECCCCc
Confidence 111124555555555554
No 38
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.76 E-value=9.5e-06 Score=66.51 Aligned_cols=37 Identities=24% Similarity=0.514 Sum_probs=34.4
Q ss_pred CCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 41 ~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
..+..||+|++.+||+||+..+++++++|||+|+.++
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII 49 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999975
No 39
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.75 E-value=2e-05 Score=61.42 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=59.0
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+.++++|+++++.-.... . ...+++|+.|+++++ .+++ +..+ ..+++|+.|+++++ .+++- .. ...+
T Consensus 67 l~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n--~l~~--~~~l-~~l~~L~~L~L~~n-~i~~~--~~-l~~l 133 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDEN--KVKD--LSSL-KDLKKLKSLSLEHN-GISDI--NG-LVHL 133 (291)
T ss_dssp CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS--CCCC--GGGG-TTCTTCCEEECTTS-CCCCC--GG-GGGC
T ss_pred CCCCCEEEccCCccCCCc---c-cccCCCCCEEECCCC--cCCC--Chhh-ccCCCCCEEECCCC-cCCCC--hh-hcCC
Confidence 457788888776432211 1 567788888888876 4443 2222 35677888887776 44431 11 2346
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++.- . ....+++|++|++++|.
T Consensus 134 ~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 134 PQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC
T ss_pred CCCCEEEccCC-cCCcc--h-hhccCCCCCEEEccCCc
Confidence 67777777665 44442 2 22356667777666664
No 40
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.74 E-value=1.4e-05 Score=68.68 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=39.9
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|+.|+++.+ .++.- ..+ ..+++|+.|+|+++ .+++..- ...+++|++|+++++ .+++- .. ..
T Consensus 128 ~~l~~L~~L~Ls~N--~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l--~~-l~ 194 (605)
T 1m9s_A 128 VHLPQLESLYLGNN--KITDI--TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL--RA-LA 194 (605)
T ss_dssp GGCTTCSEEECCSS--CCCCC--GGG-GSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC--GG-GT
T ss_pred cCCCccCEEECCCC--ccCCc--hhh-cccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC--hH-Hc
Confidence 34555555555554 23321 112 24556666666654 3332111 234566666666655 44431 22 23
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|+.|++++|.
T Consensus 195 ~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 195 GLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCSEEECCSEE
T ss_pred cCCCCCEEEccCCc
Confidence 56667777776665
No 41
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.74 E-value=6.3e-06 Score=59.28 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=62.1
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
+.+++|+++++. ++. + .....+++|+.|+++++ .++.- ...+...+++|+.|+++++ .+++-.-......++
T Consensus 42 ~~L~~L~Ls~N~-l~~--~-~~l~~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDNE-IRK--L-DGFPLLRRLKTLLVNNN--RICRI-GEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp TCCSEEECCSSC-CCE--E-CCCCCCSSCCEEECCSS--CCCEE-CSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred CCCCEEECCCCC-CCc--c-cccccCCCCCEEECCCC--ccccc-CcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 367788887754 222 1 23445678888888876 44421 1122235778888888876 454311111223577
Q ss_pred CCCEEeecCCCCCCHHH--HHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHA--LAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~--l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++... -..+...+|+|++|+++++.
T Consensus 114 ~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 114 SLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888776 443211 11234467888888887765
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.72 E-value=2.3e-05 Score=61.47 Aligned_cols=14 Identities=14% Similarity=-0.090 Sum_probs=6.8
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|+++++.
T Consensus 193 ~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQ 206 (308)
T ss_dssp GCTTCCEEECTTSC
T ss_pred CCCCCCEEEccCCc
Confidence 44455555555443
No 43
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.70 E-value=1.7e-05 Score=68.21 Aligned_cols=101 Identities=24% Similarity=0.209 Sum_probs=60.2
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+..|++|+++++..... .....+++|+.|+++.+ .+++ +..+ ..+++|+.|+++++ .++.. .....+
T Consensus 86 l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N--~l~~--l~~l-~~l~~L~~L~Ls~N-~l~~l---~~l~~l 152 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDL----SSLKDLKKLKSLSLEHN--GISD--INGL-VHLPQLESLYLGNN-KITDI---TVLSRL 152 (605)
T ss_dssp CTTCCEEECCSSCCCCC----TTSTTCTTCCEEECTTS--CCCC--CGGG-GGCTTCSEEECCSS-CCCCC---GGGGSC
T ss_pred CCCCCEEECcCCCCCCC----hhhccCCCCCEEEecCC--CCCC--Cccc-cCCCccCEEECCCC-ccCCc---hhhccc
Confidence 45667777766542211 12345677777777775 3332 2222 34677888888776 44432 223457
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|+.|+++++ .++... . ...+++|++|++++|.
T Consensus 153 ~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 153 TKLDTLSLEDN-QISDIV--P-LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp TTCSEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCC-cCCCch--h-hccCCCCCEEECcCCC
Confidence 78888888776 554422 1 3467888888888875
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.69 E-value=2.7e-05 Score=61.13 Aligned_cols=81 Identities=27% Similarity=0.274 Sum_probs=38.3
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|++|+++++ .+++ +..+ ..+++|+.|+++++ .++.... ...+++|++|+++++ .+++- .. ..
T Consensus 104 ~~l~~L~~L~l~~n--~l~~--~~~l-~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~--~~-l~ 170 (308)
T 1h6u_A 104 AGLQSIKTLDLTST--QITD--VTPL-AGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDL--TP-LA 170 (308)
T ss_dssp TTCTTCCEEECTTS--CCCC--CGGG-TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GT
T ss_pred cCCCCCCEEECCCC--CCCC--chhh-cCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCC--hh-hc
Confidence 34455555555554 2222 1111 23455666666554 3322111 234566666666655 44431 11 23
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|+++++.
T Consensus 171 ~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 171 NLSKLTTLKADDNK 184 (308)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc
Confidence 56666666666654
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.67 E-value=1.3e-05 Score=67.14 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=15.7
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQD 115 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 115 (205)
.+++|+++++.-.....+......+++|++|+++++
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 445555544432222222333444555555555554
No 46
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.67 E-value=5.7e-06 Score=59.49 Aligned_cols=106 Identities=15% Similarity=0.206 Sum_probs=73.1
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+..+++|+++++.- +. +..+....++|+.|+++++ .++. +..+ ..+++|+.|+++++ .++.-. ..+...+
T Consensus 18 ~~~L~~L~l~~n~l-~~--i~~~~~~~~~L~~L~Ls~N--~l~~--~~~l-~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRGYKI-PV--IENLGATLDQFDAIDFSDN--EIRK--LDGF-PLLRRLKTLLVNNN-RICRIG-EGLDQAL 87 (176)
T ss_dssp TTSCEEEECTTSCC-CS--CCCGGGGTTCCSEEECCSS--CCCE--ECCC-CCCSSCCEEECCSS-CCCEEC-SCHHHHC
T ss_pred cCCceEEEeeCCCC-ch--hHHhhhcCCCCCEEECCCC--CCCc--cccc-ccCCCCCEEECCCC-cccccC-cchhhcC
Confidence 45789999988743 21 2335555669999999997 5554 2222 35789999999997 555211 1123468
Q ss_pred CCCCEEeecCCCCCCHHH-HHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~-l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++.-. +.. ...+++|++|++++++
T Consensus 88 ~~L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 88 PDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNP 124 (176)
T ss_dssp TTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSG
T ss_pred CCCCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCC
Confidence 99999999987 665422 223 3479999999999987
No 47
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.63 E-value=1.1e-05 Score=63.19 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=57.0
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHH-HHHHH--HhcCcccceeeccCCCCCC--HHHHHH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN-AVEAI--ANSCHDLQDLDLSKSFKLS--DRSLYA 152 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~l~~l--~~~~~~L~~L~l~~~~~l~--~~~~~~ 152 (205)
.+++++|+++++.- .. ........+++|++|+++++ .+... .+..- ...+++|+.|+++++ .++ ......
T Consensus 144 ~~~L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 218 (310)
T 4glp_A 144 KPGLKVLSIAQAHS-PA-FSCEQVRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAA 218 (310)
T ss_dssp CSCCCEEEEECCSS-CC-CCTTSCCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHH
T ss_pred ccCCCEEEeeCCCc-ch-hhHHHhccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHH
Confidence 45677777776542 11 01123345677777777775 33322 12111 124567777777776 454 222223
Q ss_pred HHhcCCCCCEEeecCCCCCCHHHHHHHHh--cCCCCCeEeccCCc
Q 028697 153 LAHGCPNLTRLNISGCTSFSDHALAYLCG--FCRKLKILNLCGCV 195 (205)
Q Consensus 153 l~~~~~~L~~L~l~~~~~it~~~l~~l~~--~~~~L~~L~l~~c~ 195 (205)
+...+++|++|+++++ .++...-..+.. .+++|++|+++++.
T Consensus 219 l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp HHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred HHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC
Confidence 3455677777777665 444321111111 12567777776664
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.58 E-value=5.2e-05 Score=61.88 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=35.3
Q ss_pred CCCCCCCCHHHHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 40 ~~~~~~Lp~e~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
...+..||+|++.+||+||+..++.++++|||+|+.++
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~ 53 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA 53 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhc
Confidence 45688999999999999999999999999999999975
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.55 E-value=4.4e-06 Score=68.74 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=66.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHH-HHhc
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHG 156 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~-l~~~ 156 (205)
+.+|++|+++++..... .....+..+++|++|+++++ .++......+ ..+++|+.|+++++ .++...... ....
T Consensus 53 l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYN--QFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNFFKP 127 (455)
T ss_dssp CTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTC--TTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSSTTTT
T ss_pred CccccEEECcCCcccce-ECcccccccccCCEEeCCCC--ccCccChhhc-cCcccCCEEeCCCC-CCCccccCcccccC
Confidence 45678888877642111 00123456788888888876 4432211222 34678888888886 565433222 1345
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++...-..+...+++|++|+++++.
T Consensus 128 l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 128 LTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc
Confidence 778888888776 55443222223467888888888875
No 50
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.52 E-value=2.8e-06 Score=62.38 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=66.2
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+.++++|+++++.- . .+......+++|+.|+++++ .++. +..+. .+++|+.|+++++ .+++-........+
T Consensus 69 l~~L~~L~l~~n~l-~--~l~~~~~~~~~L~~L~L~~N--~l~~--l~~~~-~l~~L~~L~l~~N-~i~~~~~~~~l~~l 139 (198)
T 1ds9_A 69 MENLRILSLGRNLI-K--KIENLDAVADTLEELWISYN--QIAS--LSGIE-KLVNLRVLYMSNN-KITNWGEIDKLAAL 139 (198)
T ss_dssp HTTCCEEEEEEEEE-C--SCSSHHHHHHHCSEEEEEEE--ECCC--HHHHH-HHHHSSEEEESEE-ECCCHHHHHHHTTT
T ss_pred CCCCCEEECCCCCc-c--cccchhhcCCcCCEEECcCC--cCCc--CCccc-cCCCCCEEECCCC-cCCchhHHHHHhcC
Confidence 56788888876532 2 11223444578999999886 4553 23343 4688999999986 56643322334568
Q ss_pred CCCCEEeecCCCCCCHH---------HHHHHHhcCCCCCeEe
Q 028697 158 PNLTRLNISGCTSFSDH---------ALAYLCGFCRKLKILN 190 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~---------~l~~l~~~~~~L~~L~ 190 (205)
++|++|+++++ .++.. ....+...+|+|++|+
T Consensus 140 ~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 140 DKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 89999999886 44332 2223345789999997
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.49 E-value=7.3e-05 Score=61.90 Aligned_cols=14 Identities=7% Similarity=-0.121 Sum_probs=7.0
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|++++|.
T Consensus 351 ~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 351 NLTNINWLSAGHNQ 364 (466)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCCCEEeCCCCc
Confidence 34555555555543
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.49 E-value=7.5e-05 Score=61.83 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=6.9
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|++++|.
T Consensus 373 ~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 373 NLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCCEE
T ss_pred cCCCCCEEeccCCc
Confidence 44555555555543
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.48 E-value=0.00023 Score=59.84 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=53.1
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHH--HhcCcccceeeccCCCCCCHHH-HHHHHhc
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAI--ANSCHDLQDLDLSKSFKLSDRS-LYALAHG 156 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l--~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~ 156 (205)
.++.++++++.... .-..+...+++|++|+++++ .+++...... ...+++|+.|+++++ .++.-. .......
T Consensus 311 ~L~~L~l~~n~l~~--ip~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 311 KVKRITVENSKVFL--VPCSFSQHLKSLEFLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLT 385 (549)
T ss_dssp TCCEEEEESSCCCC--CCHHHHHHCTTCCEEECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGG
T ss_pred cceEEEeccCcccc--CCHHHHhcCccccEEEccCC--ccccccccchhhhhccccCcEEEccCC-cccccccchhhhhc
Confidence 45555555543111 00123345667777777765 5555433221 124566777777765 443322 1223445
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++. +......+++|++|+++++.
T Consensus 386 l~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 386 LKNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp CTTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTSC
T ss_pred CCCCCEEECCCC-CCcc--CChhhcccccccEEECCCCC
Confidence 667777777665 4441 11111234566666666554
No 54
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=4.3e-05 Score=58.63 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=6.9
Q ss_pred hcCCCccEEEecCC
Q 028697 102 PKLTKLQTLVLRQD 115 (205)
Q Consensus 102 ~~~~~L~~L~l~~~ 115 (205)
..+++|+.|+++++
T Consensus 82 ~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 82 KDLTKLEELSVNRN 95 (263)
T ss_dssp TTCSSCCEEECCSS
T ss_pred ccCCCCCEEECCCC
Confidence 34455555555543
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.46 E-value=1.1e-05 Score=62.08 Aligned_cols=109 Identities=25% Similarity=0.215 Sum_probs=55.5
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+..|++|+++++.- +. ........+++|++|+++++ .++.. .......+++|+.|+++++ .++...- .....+
T Consensus 84 l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l 156 (272)
T 3rfs_A 84 LTNLTYLILTGNQL-QS-LPNGVFDKLTNLKELVLVEN--QLQSL-PDGVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKL 156 (272)
T ss_dssp CTTCCEEECTTSCC-CC-CCTTTTTTCTTCCEEECTTS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCCEEECCCCcc-Cc-cChhHhcCCcCCCEEECCCC--cCCcc-CHHHhccCCCCCEEECCCC-ccCccCH-HHhccC
Confidence 34566666665431 11 01122345667777777665 33311 1111234567777777765 3432110 112346
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++...- .....+++|++|+++++.
T Consensus 157 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 157 TNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCc
Confidence 77777777776 4543211 112356778888777765
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.43 E-value=6.7e-06 Score=67.65 Aligned_cols=110 Identities=19% Similarity=0.127 Sum_probs=72.9
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|+++++. +.. .....+..+++|++|+++.+ .+...........+++|+.|+++++ .++...... ...++
T Consensus 30 ~~l~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L~L~~n--~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAE-LNETSFSRLQDLQFLKVEQQ--TPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGA-FNGLA 103 (455)
T ss_dssp TTCCEEECCSSC-CCE-ECTTTTSSCTTCCEEECCCC--STTCEECTTTTTTCTTCCEEECTTC-TTCEECTTT-TTTCT
T ss_pred CccCEEEecCCc-cCc-CChhHhccCccccEEECcCC--cccceECcccccccccCCEEeCCCC-ccCccChhh-ccCcc
Confidence 468999998864 222 11234567899999999986 3321111111245799999999987 444321111 24578
Q ss_pred CCCEEeecCCCCCCHHHHHH-HHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAY-LCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~-l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++...... ....+++|++|+++++.
T Consensus 104 ~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 104 NLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp TCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred cCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc
Confidence 9999999997 777654443 13378999999999987
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.42 E-value=4.3e-06 Score=66.30 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=5.5
Q ss_pred cCCCccEEEecC
Q 028697 103 KLTKLQTLVLRQ 114 (205)
Q Consensus 103 ~~~~L~~L~l~~ 114 (205)
.+++|++|++++
T Consensus 148 ~l~~L~~L~L~~ 159 (328)
T 4fcg_A 148 SLNRLRELSIRA 159 (328)
T ss_dssp GCTTCCEEEEEE
T ss_pred cCcCCCEEECCC
Confidence 344444444444
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.42 E-value=1.9e-06 Score=67.37 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=7.0
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|+++++.
T Consensus 221 ~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 221 CLNSLQVLDYSLNH 234 (306)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CcccCCEeECCCCC
Confidence 34555555555543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.40 E-value=1.6e-05 Score=61.45 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=47.1
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|++|+++++ .++.-.. .....+++|+.|+++++ .++...... ...+++|++|+++++ .++......+ .
T Consensus 150 ~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-~ 222 (285)
T 1ozn_A 150 RDLGNLTHLFLHGN--RISSVPE-RAFRGLHSLDRLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEAL-A 222 (285)
T ss_dssp TTCTTCCEEECCSS--CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHH-T
T ss_pred ccCCCccEEECCCC--cccccCH-HHhcCccccCEEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHc-c
Confidence 34566666666654 3331111 11123566777777665 333221111 134677888888776 5554333333 3
Q ss_pred cCCCCCeEeccCCcc
Q 028697 182 FCRKLKILNLCGCVK 196 (205)
Q Consensus 182 ~~~~L~~L~l~~c~~ 196 (205)
.+++|++|++++++-
T Consensus 223 ~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 223 PLRALQYLRLNDNPW 237 (285)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred cCcccCEEeccCCCc
Confidence 678888888887763
No 60
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.38 E-value=4.5e-05 Score=58.48 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=39.2
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 142 (205)
...+++|+++++.-...+ -...+++|+.|+++++ .+++-. . ...+++|+.|+++++
T Consensus 40 l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N--~i~~~~--~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHN--QISDLS--P-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSS--CCCCCG--G-GTTCSSCCEEECCSS
T ss_pred cCcCcEEECcCCCcccch----HHhhCCCCCEEECCCC--ccCCCh--h-hccCCCCCEEECCCC
Confidence 578899999987532221 3457899999999987 444321 1 345788888888876
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.37 E-value=1.1e-05 Score=64.07 Aligned_cols=88 Identities=25% Similarity=0.351 Sum_probs=43.5
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
...+++|++|+++++ .++. .... ...+++|+.|+++++..... +......+++|++|++++|.... ..-.. .
T Consensus 202 l~~l~~L~~L~L~~N--~l~~-l~~~-l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~-~~p~~-~ 273 (328)
T 4fcg_A 202 IANLQNLKSLKIRNS--PLSA-LGPA-IHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLL-TLPLD-I 273 (328)
T ss_dssp GGGCTTCCEEEEESS--CCCC-CCGG-GGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCC-BCCTT-G
T ss_pred hcCCCCCCEEEccCC--CCCc-Cchh-hccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchh-hcchh-h
Confidence 345566666666664 2321 1111 23456677777666532211 00012345677777776653222 11111 2
Q ss_pred hcCCCCCeEeccCCcc
Q 028697 181 GFCRKLKILNLCGCVK 196 (205)
Q Consensus 181 ~~~~~L~~L~l~~c~~ 196 (205)
..+++|++|++++|..
T Consensus 274 ~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVN 289 (328)
T ss_dssp GGCTTCCEEECTTCTT
T ss_pred hcCCCCCEEeCCCCCc
Confidence 3577777777777764
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.37 E-value=1.3e-05 Score=61.79 Aligned_cols=110 Identities=20% Similarity=0.134 Sum_probs=71.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+..|++|+++++.-.. ........+++|++|+++++ .++.. .......+++|+.|+++++ .++...- .....+
T Consensus 108 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n--~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l 180 (272)
T 3rfs_A 108 LTNLKELVLVENQLQS--LPDGVFDKLTNLTYLNLAHN--QLQSL-PKGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKL 180 (272)
T ss_dssp CTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CcCCCEEECCCCcCCc--cCHHHhccCCCCCEEECCCC--ccCcc-CHHHhccCccCCEEECCCC-CcCccCH-HHhcCC
Confidence 4678999998865221 11123457889999999987 44421 1122245789999999987 4542111 112457
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 196 (205)
++|++|+++++ .++...- .....+++|++|++++++-
T Consensus 181 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 181 TQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp TTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred ccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCCCc
Confidence 89999999887 5654221 2234689999999998763
No 63
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.34 E-value=2.1e-05 Score=57.53 Aligned_cols=105 Identities=20% Similarity=0.189 Sum_probs=71.2
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...+++|+++++.- .. +. ....+++|+.|+++++ .++. +......+++|+.|+++++ .++.-. . ...+
T Consensus 47 l~~L~~L~ls~n~l-~~--l~-~~~~l~~L~~L~l~~n--~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l~--~-~~~l 114 (198)
T 1ds9_A 47 LKACKHLALSTNNI-EK--IS-SLSGMENLRILSLGRN--LIKK--IENLDAVADTLEELWISYN-QIASLS--G-IEKL 114 (198)
T ss_dssp TTTCSEEECSEEEE-SC--CC-CHHHHTTCCEEEEEEE--EECS--CSSHHHHHHHCSEEEEEEE-ECCCHH--H-HHHH
T ss_pred CCCCCEEECCCCCC-cc--cc-ccccCCCCCEEECCCC--Cccc--ccchhhcCCcCCEEECcCC-cCCcCC--c-cccC
Confidence 45778999887532 21 12 3446789999999986 3331 2223344689999999997 555422 2 2346
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++.-........+++|++|++++++
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 89999999887 67753332233479999999999986
No 64
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.34 E-value=8.8e-05 Score=60.46 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=33.9
Q ss_pred CCCCCCCHH----HHHHHHhcCChhHHHHhhccchhhHHhh
Q 028697 41 TEWKDIPME----LLLRILSLVDEPTVIVASGVCSGWRDAI 77 (205)
Q Consensus 41 ~~~~~Lp~e----~l~~If~~l~~~~l~~~~~vck~w~~~~ 77 (205)
..+..||+| ++.+||+||+..++.++++|||+|+.++
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~ 49 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVT 49 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 456779999 9999999999999999999999999885
No 65
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.30 E-value=9.9e-06 Score=59.71 Aligned_cols=109 Identities=20% Similarity=0.147 Sum_probs=61.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...|++|+++++. +.. .....+..+++|++|+++++ .++.- .......+++|+.|+++++ .++...- .....+
T Consensus 51 l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l 123 (208)
T 2o6s_A 51 LTSLTQLYLGGNK-LQS-LPNGVFNKLTSLTYLNLSTN--QLQSL-PNGVFDKLTQLKELALNTN-QLQSLPD-GVFDKL 123 (208)
T ss_dssp CTTCSEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred cccCcEEECCCCc-cCc-cChhhcCCCCCcCEEECCCC--cCCcc-CHhHhcCccCCCEEEcCCC-cCcccCH-hHhccC
Confidence 4567888887653 221 11123456778888888875 33311 1111235678888888875 4432111 112346
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++...- .....+++|++|++++++
T Consensus 124 ~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 124 TQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence 78888888776 4543211 222357888888888865
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.29 E-value=2.2e-06 Score=67.05 Aligned_cols=110 Identities=24% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|+++++. +...........+++|++|+++++ .++......+ ..+++|+.|+++++ .++...... ...++
T Consensus 150 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~ 223 (306)
T 2z66_A 150 SSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFP-YKCLN 223 (306)
T ss_dssp TTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTT-TTCTTCCEEECTTS-CCSBCCSGG-GTTCT
T ss_pred cCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCC--CcCCcCHHHh-cCCCCCCEEECCCC-ccCccChhh-ccCcc
Confidence 345566665532 111111223445677888888775 4443211222 34678888888886 343221111 24578
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcC-CCCCeEeccCCcc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFC-RKLKILNLCGCVK 196 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~-~~L~~L~l~~c~~ 196 (205)
+|++|+++++ .++......+. .+ ++|++|++++++-
T Consensus 224 ~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 224 SLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTCCE
T ss_pred cCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCCCe
Confidence 9999999887 66554333333 34 5899999999874
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.29 E-value=7.7e-05 Score=62.45 Aligned_cols=107 Identities=24% Similarity=0.316 Sum_probs=48.1
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCH-HHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..+++|+++++. ++.. .......+++|++|+++++ .++. ..+......+++|+.|+++++ .++...-......+
T Consensus 324 ~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 324 SPFLHLDFSNNL-LTDT-VFENCGHLTELETLILQMN--QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWT 398 (520)
T ss_dssp CCCCEEECCSSC-CCTT-TTTTCCCCSSCCEEECCSS--CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCC
T ss_pred CcccEEEeECCc-cChh-hhhhhccCCCCCEEEccCC--ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccC
Confidence 445666665543 2211 0112234556666666654 3332 112222234566666666654 33220000011234
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcC-CCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFC-RKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~-~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++.... ... ++|++|++++|.
T Consensus 399 ~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 399 KSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSNK 432 (520)
T ss_dssp TTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSSC
T ss_pred ccCCEEECcCC-CCCcchh----hhhcccCCEEECCCCc
Confidence 56666666665 4443211 122 466677666664
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.29 E-value=2e-06 Score=72.74 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=6.5
Q ss_pred cCCCccEEEecCC
Q 028697 103 KLTKLQTLVLRQD 115 (205)
Q Consensus 103 ~~~~L~~L~l~~~ 115 (205)
.+++|++|+++.+
T Consensus 419 ~l~~L~~L~l~~n 431 (570)
T 2z63_A 419 SLRNLIYLDISHT 431 (570)
T ss_dssp TCTTCCEEECTTS
T ss_pred cCCCCCEEeCcCC
Confidence 4445555555543
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.28 E-value=7.2e-06 Score=70.00 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=17.9
Q ss_pred cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
.+++|++|++++| .++...-..+ ..+++|++|+++++.
T Consensus 474 ~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 474 TLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNR 511 (606)
T ss_dssp GCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred cCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCc
Confidence 3455555555554 3332211112 245556666666554
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.28 E-value=2.6e-05 Score=62.98 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=37.3
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
...+++|++|+++++ .++......+ ..+++|+.|+++++ .++.-. .....+++|++|+++++ .++.- ..-.
T Consensus 244 l~~l~~L~~L~Ls~n--~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n-~l~~~--~~~~ 314 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN--ELEKIMYHPF-VKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHN-HLLHV--ERNQ 314 (390)
T ss_dssp GGGCTTCSEEECCSS--CCCEEESGGG-TTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSS-CCCCC--GGGH
T ss_pred HcCCCCccEEECCCC--cCCCcChhHc-cccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCC-cceec--Cccc
Confidence 345566666666664 3332111112 23455666666554 332210 00123455666666554 33311 1001
Q ss_pred hcCCCCCeEeccCCc
Q 028697 181 GFCRKLKILNLCGCV 195 (205)
Q Consensus 181 ~~~~~L~~L~l~~c~ 195 (205)
..+++|++|+++++.
T Consensus 315 ~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 315 PQFDRLENLYLDHNS 329 (390)
T ss_dssp HHHTTCSEEECCSSC
T ss_pred cccCcCCEEECCCCc
Confidence 234555555555544
No 71
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.27 E-value=1e-05 Score=59.64 Aligned_cols=13 Identities=31% Similarity=0.128 Sum_probs=6.7
Q ss_pred cCCCCCeEeccCC
Q 028697 182 FCRKLKILNLCGC 194 (205)
Q Consensus 182 ~~~~L~~L~l~~c 194 (205)
.+++|++|+++++
T Consensus 122 ~l~~L~~L~l~~N 134 (208)
T 2o6s_A 122 KLTQLKDLRLYQN 134 (208)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCcCCEEECCCC
Confidence 3455555555554
No 72
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.27 E-value=1.3e-06 Score=68.85 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=57.9
Q ss_pred hHHhhc------CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecC-CCCCCCHHHHHHHHhcCcccceeeccCCCCC
Q 028697 73 WRDAIC------LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDLQDLDLSKSFKL 145 (205)
Q Consensus 73 w~~~~~------~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l 145 (205)
|..+.| ..+++|+++++.-.....+......+++|++|++++ + .+.......+ ..+++|+.|+++++ .+
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n--~l~~~~p~~l-~~l~~L~~L~Ls~n-~l 113 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--NLVGPIPPAI-AKLTQLHYLYITHT-NV 113 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET--TEESCCCGGG-GGCTTCSEEEEEEE-CC
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC--cccccCChhH-hcCCCCCEEECcCC-ee
Confidence 777755 357788887654211001122445677888888873 2 2222111122 24677777777765 33
Q ss_pred CHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 146 SDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 146 ~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+...-. ....+++|++|+++++ .++...-..+ ..+++|++|+++++.
T Consensus 114 ~~~~p~-~~~~l~~L~~L~Ls~N-~l~~~~p~~~-~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 114 SGAIPD-FLSQIKTLVTLDFSYN-ALSGTLPPSI-SSLPNLVGITFDGNR 160 (313)
T ss_dssp EEECCG-GGGGCTTCCEEECCSS-EEESCCCGGG-GGCTTCCEEECCSSC
T ss_pred CCcCCH-HHhCCCCCCEEeCCCC-ccCCcCChHH-hcCCCCCeEECcCCc
Confidence 211000 1234566777777665 3332111112 246666666666665
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.27 E-value=8.5e-06 Score=62.72 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=51.1
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...+++|+++++.- .. .....+..+++|++|+++++ .++......+ ..+++|+.|++.++ .++...-.. ...+
T Consensus 51 l~~L~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l 123 (276)
T 2z62_A 51 FPELQVLDLSRCEI-QT-IEDGAYQSLSHLSTLILTGN--PIQSLALGAF-SGLSSLQKLVAVET-NLASLENFP-IGHL 123 (276)
T ss_dssp CTTCSEEECTTCCC-CE-ECTTTTTTCTTCCEEECTTC--CCCEECTTTT-TTCTTCCEEECTTS-CCCCSTTCC-CTTC
T ss_pred ccCCcEEECCCCcC-Cc-cCHHHccCCcCCCEEECCCC--ccCccChhhh-cCCccccEEECCCC-CccccCchh-cccC
Confidence 34566777766531 11 00112345566777777664 3332111112 23566666666654 222111000 1235
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++...+......+++|++|+++++.
T Consensus 124 ~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 124 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC
Confidence 66666666654 34332111222356666666666664
No 74
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.26 E-value=5.5e-06 Score=70.72 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=5.6
Q ss_pred CCCCCeEeccCC
Q 028697 183 CRKLKILNLCGC 194 (205)
Q Consensus 183 ~~~L~~L~l~~c 194 (205)
+++|++|++++|
T Consensus 475 l~~L~~L~Ls~n 486 (606)
T 3t6q_A 475 LGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCccEEECCCC
Confidence 444444444444
No 75
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.26 E-value=2.6e-05 Score=58.52 Aligned_cols=108 Identities=21% Similarity=0.140 Sum_probs=62.8
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..+|++|+++++.- .. .....+..+++|+.|+++++ .++.- .......+++|+.|+++++ .++. +..-...+
T Consensus 63 l~~L~~L~L~~N~l-~~-i~~~~~~~l~~L~~L~Ls~N--~l~~l-~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l 134 (229)
T 3e6j_A 63 LINLKELYLGSNQL-GA-LPVGVFDSLTQLTVLDLGTN--QLTVL-PSAVFDRLVHLKELFMCCN-KLTE--LPRGIERL 134 (229)
T ss_dssp CTTCCEEECCSSCC-CC-CCTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCS--CCTTGGGC
T ss_pred ccCCcEEECCCCCC-CC-cChhhcccCCCcCEEECCCC--cCCcc-ChhHhCcchhhCeEeccCC-cccc--cCcccccC
Confidence 45678888876542 11 00123456788888888876 34321 1112235678888888876 4441 11112457
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++.-.- .....+++|++|++++.+
T Consensus 135 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 135 THLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 88888888776 5553211 222367888888888766
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.23 E-value=1.2e-05 Score=62.07 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=18.0
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++......+ ..+++|++|+++++.
T Consensus 176 l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 176 LHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN 212 (285)
T ss_dssp CTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred ccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCCc
Confidence 455556665554 3333221222 245666666666654
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.23 E-value=4e-06 Score=70.89 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=70.4
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|+++++.... ........+++|++|+++++ .+++..+......+++|+.|+++++ .++...... ...++
T Consensus 421 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n--~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~ 494 (570)
T 2z63_A 421 RNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLS 494 (570)
T ss_dssp TTCCEEECTTSCCEE--CCTTTTTTCTTCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCT
T ss_pred CCCCEEeCcCCcccc--cchhhhhcCCcCcEEECcCC--cCccccchhhhhcccCCCEEECCCC-ccccCChhh-hhccc
Confidence 456666666653211 01234457899999999987 4442222222346789999999997 555322112 23589
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 196 (205)
+|++|+++++ .++...... ...+++|++|++++++-
T Consensus 495 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 495 SLQVLNMASN-QLKSVPDGI-FDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred CCCEEeCCCC-cCCCCCHHH-hhcccCCcEEEecCCcc
Confidence 9999999987 565432222 24789999999999873
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.22 E-value=2.2e-05 Score=59.66 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=42.5
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|++|+++++ .++.- .......+++|+.|+++++ .++.-... ....+++|++|+++++ .++...-.. ..
T Consensus 104 ~~l~~L~~L~L~~N--~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~-~~ 176 (251)
T 3m19_A 104 DHLTQLDKLYLGGN--QLKSL-PSGVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTN-QLQSVPHGA-FD 176 (251)
T ss_dssp TTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTT-TT
T ss_pred cccCCCCEEEcCCC--cCCCc-ChhHhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCC-cCCccCHHH-Hh
Confidence 44566666666654 33310 1111123566777776665 33311110 1124567777777665 444221111 23
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|++++++
T Consensus 177 ~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 177 RLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEeeCCc
Confidence 56777777777765
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.21 E-value=1.7e-05 Score=60.92 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=18.1
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++...- .....+++|++|++++++
T Consensus 180 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 180 LTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence 456666666554 3432111 111245666666666554
No 80
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.18 E-value=4.9e-05 Score=66.98 Aligned_cols=61 Identities=30% Similarity=0.480 Sum_probs=33.6
Q ss_pred cCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 130 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
.+++|+.|+++++ .++.. +.. ...+++|++|+++++ .++......+ ..+++|++|++++|.
T Consensus 198 ~l~~L~~L~Ls~n-~l~~~-~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l-~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 198 RCVNLEFLDVSSN-NFSTG-IPF-LGDCSALQHLDISGN-KLSGDFSRAI-STCTELKLLNISSNQ 258 (768)
T ss_dssp TCTTCCEEECCSS-CCCSC-CCB-CTTCCSCCEEECCSS-CCCSCHHHHT-TTCSSCCEEECCSSC
T ss_pred cCCcCCEEECcCC-cCCCC-Ccc-cccCCCCCEEECcCC-cCCCcccHHH-hcCCCCCEEECCCCc
Confidence 4556666666665 22210 001 234677777777765 5554333333 357777777777765
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.17 E-value=2e-05 Score=60.52 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=43.5
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|++|+++++ .++.... .....+++|+.|+++++ .++..... ....+++|++|+++++ .++......+ .
T Consensus 106 ~~l~~L~~L~l~~n--~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~ 178 (270)
T 2o6q_A 106 DQLVNLAELRLDRN--QLKSLPP-RVFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNN-QLKRVPEGAF-D 178 (270)
T ss_dssp TTCSSCCEEECCSS--CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTT-T
T ss_pred ccccCCCEEECCCC--ccCeeCH-HHhCcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCC-cCcEeChhHh-c
Confidence 44566666666654 2221111 11134566777777665 33321110 1234677777777665 4443211112 2
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|+++++.
T Consensus 179 ~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 179 KLTELKTLKLDNNQ 192 (270)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCCCcCEEECCCCc
Confidence 56778888877764
No 82
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.16 E-value=0.00039 Score=53.51 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=60.7
Q ss_pred HHHhcCCCccEEEecCCCCCCCH-HHHHHHHhcCcccceeeccCCCCCCHH-HHHHHHhcCCCCCEEeecCCCCCCH---
Q 028697 99 SLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSDR-SLYALAHGCPNLTRLNISGCTSFSD--- 173 (205)
Q Consensus 99 ~l~~~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~it~--- 173 (205)
.+...+++|+.|+++.+ .++. ..+..+...+++|+.|+|+++ .+++. .+..+. .+ +|++|.++++ .++.
T Consensus 164 i~~~~l~~L~~L~Ls~N--~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~ 237 (267)
T 3rw6_A 164 IIEENIPELLSLNLSNN--RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDTFR 237 (267)
T ss_dssp HHHHHCTTCCEEECTTS--CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCS
T ss_pred HHHhhCCCCCEEECCCC--CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccccC
Confidence 34467899999999997 4443 123334456899999999986 56543 333322 23 8999999987 5653
Q ss_pred ---HHHHHHHhcCCCCCeEeccC
Q 028697 174 ---HALAYLCGFCRKLKILNLCG 193 (205)
Q Consensus 174 ---~~l~~l~~~~~~L~~L~l~~ 193 (205)
.....+...+|+|+.|+-..
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESSCB
T ss_pred cchhHHHHHHHHCcccCeECCcC
Confidence 34456667899999997554
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.16 E-value=2e-05 Score=58.81 Aligned_cols=109 Identities=19% Similarity=0.166 Sum_probs=63.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..+|++|+++++.. +. .....+..+++|++|+++++ .++. ....+...+++|+.|+++++ .++...... ...+
T Consensus 55 l~~L~~L~Ls~N~i-~~-~~~~~~~~l~~L~~L~Ls~N--~l~~-l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~-~~~l 127 (220)
T 2v9t_B 55 YKKLRRIDLSNNQI-SE-LAPDAFQGLRSLNSLVLYGN--KITE-LPKSLFEGLFSLQLLLLNAN-KINCLRVDA-FQDL 127 (220)
T ss_dssp CTTCCEEECCSSCC-CE-ECTTTTTTCSSCCEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTC
T ss_pred CCCCCEEECCCCcC-CC-cCHHHhhCCcCCCEEECCCC--cCCc-cCHhHccCCCCCCEEECCCC-CCCEeCHHH-cCCC
Confidence 45678888877542 21 00123456788888888876 3431 11122235678888888876 443221111 2346
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++...-..+ ..+++|++|++++.+
T Consensus 128 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 128 HNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCCC
Confidence 78888888776 4543222222 357888888888876
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.16 E-value=1.6e-05 Score=60.35 Aligned_cols=109 Identities=20% Similarity=0.183 Sum_probs=66.1
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..+|++|+++++.- .. .....+..+++|++|+++++ .++.. .......+++|+.|+++++ .++.-.- .....+
T Consensus 58 l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l 130 (251)
T 3m19_A 58 LTKLTWLNLDYNQL-QT-LSAGVFDDLTELGTLGLANN--QLASL-PLGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRL 130 (251)
T ss_dssp CTTCCEEECTTSCC-CC-CCTTTTTTCTTCCEEECTTS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred cccCCEEECCCCcC-Cc-cCHhHhccCCcCCEEECCCC--ccccc-ChhHhcccCCCCEEEcCCC-cCCCcCh-hHhccC
Confidence 46788888887542 21 11123456788999999886 44421 1112245688999999886 4442111 112357
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++.-.-.. ...+++|++|+++++.
T Consensus 131 ~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 131 TKLKELRLNTN-QLQSIPAGA-FDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CcccEEECcCC-cCCccCHHH-cCcCcCCCEEECCCCc
Confidence 88999999876 555322112 2367889999998875
No 85
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.15 E-value=0.00037 Score=55.42 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=36.2
Q ss_pred cccceeeccCCCCCCHHHHHHH---HhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697 132 HDLQDLDLSKSFKLSDRSLYAL---AHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 132 ~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 196 (205)
..++.+++.+. .+++..+..+ ...+++|++|+++++ .++.- -..+...+++|++|++++++-
T Consensus 249 ~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 249 SLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSV-PDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred chhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCcc-CHHHHhcCCCCCEEEeeCCCc
Confidence 33444444443 4555544443 345788888888876 55521 112224678888888888863
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.15 E-value=3.8e-05 Score=65.11 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHhc
Q 028697 45 DIPMELLLRILSL 57 (205)
Q Consensus 45 ~Lp~e~l~~If~~ 57 (205)
.+|.+.+..+|..
T Consensus 318 ~~p~~~~~~~~~~ 330 (562)
T 3a79_B 318 LFSKEALYSVFAE 330 (562)
T ss_dssp SSCHHHHHHHHHT
T ss_pred ecChhhhhhhhcc
Confidence 5676666666543
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.13 E-value=4.7e-05 Score=65.13 Aligned_cols=86 Identities=17% Similarity=0.124 Sum_probs=38.1
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
...+++|+.|+++++ .++......+ ..+++|+.|+++++ .++.- ......+++|++|+++++ .++. +..-.
T Consensus 250 l~~l~~L~~L~Ls~N--~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~ 320 (597)
T 3oja_B 250 LLNYPGLVEVDLSYN--ELEKIMYHPF-VKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHN-HLLH--VERNQ 320 (597)
T ss_dssp GGGCTTCSEEECCSS--CCCEEESGGG-TTCSSCCEEECTTS-CCCEE--ECSSSCCTTCCEEECCSS-CCCC--CGGGH
T ss_pred hccCCCCCEEECCCC--ccCCCCHHHh-cCccCCCEEECCCC-CCCCC--CcccccCCCCcEEECCCC-CCCc--cCccc
Confidence 345666777776664 3332211122 23456666666654 33221 011123456666666554 3331 11111
Q ss_pred hcCCCCCeEeccCCc
Q 028697 181 GFCRKLKILNLCGCV 195 (205)
Q Consensus 181 ~~~~~L~~L~l~~c~ 195 (205)
..+++|++|++++|.
T Consensus 321 ~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 321 PQFDRLENLYLDHNS 335 (597)
T ss_dssp HHHTTCSEEECCSSC
T ss_pred ccCCCCCEEECCCCC
Confidence 234555555555544
No 88
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.13 E-value=2.5e-05 Score=63.10 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=52.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..+|++|+++++..... ....+..+++|++|+++++ .++. ....+...+++|+.|+++++ .++...-. ....+
T Consensus 92 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n--~l~~-l~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l 164 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYL--PPHVFQNVPLLTVLVLERN--DLSS-LPRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQAT 164 (390)
T ss_dssp CTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCBCCTT-TTSSC
T ss_pred CCCcCEEECCCCCCCcC--CHHHhcCCCCCCEEECCCC--ccCc-CCHHHhcCCCCCcEEECCCC-ccCccChh-hccCC
Confidence 44566777665432110 0122345667777777665 3331 11111234567777777765 33221110 12345
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++... ...+++|++|+++++.
T Consensus 165 ~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 165 TSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL 197 (390)
T ss_dssp TTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred CCCCEEECCCC-cCCccc----cccccccceeeccccc
Confidence 67777777665 444322 2245666666666654
No 89
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.11 E-value=6.2e-06 Score=70.39 Aligned_cols=12 Identities=33% Similarity=0.246 Sum_probs=5.3
Q ss_pred CCCCCEEeecCC
Q 028697 157 CPNLTRLNISGC 168 (205)
Q Consensus 157 ~~~L~~L~l~~~ 168 (205)
+++|++|+++++
T Consensus 496 l~~L~~L~Ls~N 507 (606)
T 3vq2_A 496 LHRLQLLNMSHN 507 (606)
T ss_dssp CTTCCEEECCSS
T ss_pred cccCCEEECCCC
Confidence 344444444443
No 90
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.11 E-value=0.00017 Score=61.52 Aligned_cols=104 Identities=21% Similarity=0.242 Sum_probs=72.2
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...++.|+++++.- +. +.. +..+++|+.|+++++ .++ .....+ ..+++|+.|+++++ .++. +.. ...+
T Consensus 440 ~~~L~~L~Ls~n~l-~~--lp~-~~~l~~L~~L~Ls~N--~l~-~lp~~~-~~l~~L~~L~Ls~N-~l~~--lp~-l~~l 507 (567)
T 1dce_A 440 YADVRVLHLAHKDL-TV--LCH-LEQLLLVTHLDLSHN--RLR-ALPPAL-AALRCLEVLQASDN-ALEN--VDG-VANL 507 (567)
T ss_dssp HTTCSEEECTTSCC-SS--CCC-GGGGTTCCEEECCSS--CCC-CCCGGG-GGCTTCCEEECCSS-CCCC--CGG-GTTC
T ss_pred ccCceEEEecCCCC-CC--CcC-ccccccCcEeecCcc--ccc-ccchhh-hcCCCCCEEECCCC-CCCC--Ccc-cCCC
Confidence 34688999998642 22 223 567889999999987 444 111233 35889999999987 5553 222 3458
Q ss_pred CCCCEEeecCCCCCCHHH-HHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~-l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++... ...+ ..+++|++|+++++.
T Consensus 508 ~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 508 PRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGNS 544 (567)
T ss_dssp SSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTSG
T ss_pred CCCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCCc
Confidence 99999999887 666532 2333 378999999999987
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.11 E-value=4.6e-05 Score=57.16 Aligned_cols=107 Identities=20% Similarity=0.081 Sum_probs=70.3
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
.++++|+++++..... ....+..+++|++|+++++ .++.- .......+++|+.|+++++ .++.-.- .....++
T Consensus 40 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N--~l~~i-~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSN--QLGAL-PVGVFDSLTQLTVLDLGTN-QLTVLPS-AVFDRLV 112 (229)
T ss_dssp TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCC--CCCCc-ChhhcccCCCcCEEECCCC-cCCccCh-hHhCcch
Confidence 4689999987642211 1134557899999999986 44321 1122245789999999987 5542111 1124578
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++. +-.-...+++|++|+++++.
T Consensus 113 ~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 113 HLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp TCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSSC
T ss_pred hhCeEeccCC-cccc--cCcccccCCCCCEEECCCCc
Confidence 9999999886 6662 22222578999999999875
No 92
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.11 E-value=5.2e-06 Score=70.84 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=47.6
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|++|+++++ .++......+ ..+++|+.|+++++ .+++..+......+++|++|+++++ .++...-..+ .
T Consensus 421 ~~l~~L~~L~l~~n--~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~ 494 (606)
T 3vq2_A 421 LSLEKLLYLDISYT--NTKIDFDGIF-LGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVF-D 494 (606)
T ss_dssp TTCTTCCEEECTTS--CCEECCTTTT-TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-T
T ss_pred hccccCCEEECcCC--CCCccchhhh-cCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhh-c
Confidence 35566666666664 2322111112 34567777777765 3433211112235678888888776 5543222222 3
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|++++|.
T Consensus 495 ~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 495 TLHRLQLLNMSHNN 508 (606)
T ss_dssp TCTTCCEEECCSSC
T ss_pred ccccCCEEECCCCc
Confidence 57778888877775
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.10 E-value=2.1e-05 Score=58.75 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=66.9
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...|++|+++++. ++. .....+..+++|++|+++++ .++.... .....+++|+.|+++++ .++...-.. ...+
T Consensus 56 l~~L~~L~L~~N~-i~~-i~~~~~~~l~~L~~L~Ls~N--~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l 128 (220)
T 2v70_A 56 LPQLRKINFSNNK-ITD-IEEGAFEGASGVNEILLTSN--RLENVQH-KMFKGLESLKTLMLRSN-RITCVGNDS-FIGL 128 (220)
T ss_dssp CTTCCEEECCSSC-CCE-ECTTTTTTCTTCCEEECCSS--CCCCCCG-GGGTTCSSCCEEECTTS-CCCCBCTTS-STTC
T ss_pred CCCCCEEECCCCc-CCE-ECHHHhCCCCCCCEEECCCC--ccCccCH-hHhcCCcCCCEEECCCC-cCCeECHhH-cCCC
Confidence 5678888888754 221 00123456788999999886 4432111 11245788999999886 443211111 2357
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 196 (205)
++|++|+++++ .++...-..+ ..+++|++|++++.+-
T Consensus 129 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 129 SSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCCE
T ss_pred ccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcCC
Confidence 88999999876 5554221222 3678899999988763
No 94
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.09 E-value=2.5e-05 Score=56.01 Aligned_cols=108 Identities=20% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|+++++.- .. ........+++|++|+++++ .++.- .......+++|+.|+++++ .++...- .....++
T Consensus 28 ~~l~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKL-QS-LPHGVFDKLTQLTKLSLSQN--QIQSL-PDGVFDKLTKLTILYLHEN-KLQSLPN-GVFDKLT 100 (177)
T ss_dssp TTCSEEECCSSCC-CC-CCTTTTTTCTTCSEEECCSS--CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCcEEEeCCCcc-cE-eCHHHhcCcccccEEECCCC--cceEe-ChhHccCCCccCEEECCCC-CccccCH-HHhhCCc
Confidence 3567777776532 21 11123356678888888775 33311 1111234678888888875 4432110 1123467
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++.-. ..+...+++|++|++++++
T Consensus 101 ~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence 8888888775 554211 1222357788888888776
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.09 E-value=1.8e-05 Score=59.01 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|++++... .. .....+..+++|+.|+++++ .++......+ ..+++|+.|+++++ .++.-. ..+...++
T Consensus 32 ~~l~~L~l~~n~i-~~-i~~~~~~~l~~L~~L~Ls~N--~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTI-KV-IPPGAFSPYKKLRRIDLSNN--QISELAPDAF-QGLRSLNSLVLYGN-KITELP-KSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSCC-CE-ECTTSSTTCTTCCEEECCSS--CCCEECTTTT-TTCSSCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred cCCCEEECCCCcC-CC-cCHhHhhCCCCCCEEECCCC--cCCCcCHHHh-hCCcCCCEEECCCC-cCCccC-HhHccCCC
Confidence 3578899887542 21 00123456789999999986 4543211222 35789999999986 444211 11124578
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++......+ ..+++|++|+++++.
T Consensus 105 ~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRVDAF-QDLHNLNLLSLYDNK 139 (220)
T ss_dssp TCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCEeCHHHc-CCCCCCCEEECCCCc
Confidence 9999999886 5654322222 368999999999986
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.08 E-value=2.3e-05 Score=66.78 Aligned_cols=110 Identities=20% Similarity=0.174 Sum_probs=63.4
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+.+|++|+++++.-... -...+..+++|++|+++++ .++.-. ......+++|+.|+++++ .++.-.-. ....+
T Consensus 75 l~~L~~L~Ls~N~i~~i--~~~~f~~L~~L~~L~Ls~N--~l~~l~-~~~f~~L~~L~~L~Ls~N-~l~~l~~~-~~~~L 147 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGN--PIQSLA-LGAFSGLSSLQKLVAVET-NLASLENF-PIGHL 147 (635)
T ss_dssp CTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTC--CCCEEC-GGGGTTCTTCCEEECTTS-CCCCSTTC-CCTTC
T ss_pred CCCCCEEECCCCcCCCc--ChhHhcCCCCCCEEEccCC--cCCCCC-HHHhcCCCCCCEEECCCC-cCCCCChh-hhhcC
Confidence 56778888887642110 0123456788888888876 343211 112245778888888876 33321100 12346
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++...+......+++|++|+++++.
T Consensus 148 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 148 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence 78888888776 44432222233467888888888775
No 97
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.06 E-value=1.6e-05 Score=63.45 Aligned_cols=111 Identities=16% Similarity=0.094 Sum_probs=47.4
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+.++++|+++++. ++. .....+..+++|++|+++++ .++.- .......+++|+.|+++++ .++.-........+
T Consensus 75 l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n--~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l 148 (353)
T 2z80_A 75 CVNLQALVLTSNG-INT-IEEDSFSSLGSLEHLDLSYN--YLSNL-SSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL 148 (353)
T ss_dssp CTTCCEEECTTSC-CCE-ECTTTTTTCTTCCEEECCSS--CCSSC-CHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred CCCCCEEECCCCc-cCc-cCHhhcCCCCCCCEEECCCC--cCCcC-CHhHhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence 3456666666543 111 00112334566666666654 33321 1111234566666666654 33211000012235
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++..++......+ ..+++|++|+++++.
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASD 185 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT
T ss_pred CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCC
Confidence 5666666655422222111111 235555555555553
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.05 E-value=0.00034 Score=62.54 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=49.8
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCH----HHHHHHH---hcCCCCCEEeecCCCCCCHHH
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD----RSLYALA---HGCPNLTRLNISGCTSFSDHA 175 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~----~~~~~l~---~~~~~L~~L~l~~~~~it~~~ 175 (205)
.+++|+.|+++.+ .+.......+ ..+++|+.|+++++..++. ..+..+. ..+++|++|+++++ .++ .
T Consensus 489 ~L~~L~~L~Ls~N--~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNC--PNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--E 562 (876)
T ss_dssp GCTTCCEEEEESC--TTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--B
T ss_pred cCCCCCEEECcCC--CCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--c
Confidence 6777888888775 2222111222 3467788888877632554 2233332 34567778877775 555 2
Q ss_pred HHH--HHhcCCCCCeEeccCCc
Q 028697 176 LAY--LCGFCRKLKILNLCGCV 195 (205)
Q Consensus 176 l~~--l~~~~~~L~~L~l~~c~ 195 (205)
+-. ....+++|++|+++++.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSC
T ss_pred cCChhhhhcCCCCCEEECCCCC
Confidence 222 23367777777777765
No 99
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.05 E-value=0.00022 Score=61.47 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=71.6
Q ss_pred cCCCceEecCCCCCCCHH----------------HHHHHHh--cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeec
Q 028697 78 CLGLTHLSLSWCKNNMNN----------------LVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDL 139 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~----------------~~~~l~~--~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l 139 (205)
+..|++|+++++. ++.. .+..-.. .+++|++|+++++ .+.......+ ..+++|+.|++
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n--~l~~~~p~~l-~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC--PNLTKLPTFL-KALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC--TTCSSCCTTT-TTCSSCCEEEC
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC--cCCccChHHH-hcCCCCCEEEC
Confidence 5678999998765 3331 0222233 6889999999986 3332222223 35789999999
Q ss_pred cCCCCCCH-H---HHHHHH--hcCCCCCEEeecCCCCCCHHHHHH--HHhcCCCCCeEeccCCc
Q 028697 140 SKSFKLSD-R---SLYALA--HGCPNLTRLNISGCTSFSDHALAY--LCGFCRKLKILNLCGCV 195 (205)
Q Consensus 140 ~~~~~l~~-~---~~~~l~--~~~~~L~~L~l~~~~~it~~~l~~--l~~~~~~L~~L~l~~c~ 195 (205)
+++..++. . .+..+. ..+++|++|+++++ .++ .+-. ....+++|++|+++++.
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc
Confidence 99743776 2 222221 23589999999887 666 2322 33478899999999886
No 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.03 E-value=4e-05 Score=56.03 Aligned_cols=106 Identities=18% Similarity=0.102 Sum_probs=58.2
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 159 (205)
.+++|++++..- + .+...+..+++|+.|+++++ .++.-.-..+ ..+++|+.|+++++ .++.-.-.. ...+++
T Consensus 32 ~l~~L~L~~n~i-~--~ip~~~~~l~~L~~L~Ls~N--~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~ 103 (193)
T 2wfh_A 32 DVTELYLDGNQF-T--LVPKELSNYKHLTLIDLSNN--RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRT-FDGLKS 103 (193)
T ss_dssp TCCEEECCSSCC-C--SCCGGGGGCTTCCEEECCSS--CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-TTTCTT
T ss_pred CCCEEECCCCcC-c--hhHHHhhcccCCCEEECCCC--cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHH-hCCCCC
Confidence 467777776432 2 11124456778888888775 3432111112 34677888888775 333211111 234678
Q ss_pred CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
|++|+++++ .++.-.- .....+++|++|++++.+
T Consensus 104 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 104 LRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence 888888775 4542111 112356778888887765
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.03 E-value=2.4e-05 Score=61.52 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=16.7
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++. +......+++|++|++++++
T Consensus 213 l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 213 AAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp GTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred cCcccEEECcCC-cccc--hhhHhhcCCCCCEEEccCCC
Confidence 455555555554 3331 11112244555555555554
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.00 E-value=7.3e-05 Score=64.68 Aligned_cols=109 Identities=22% Similarity=0.222 Sum_probs=62.7
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+..+++|+++++.. .. .....+..+++|++|+++++ .++.-.-..+ ..+++|+.|+++++ .++...-.. ...+
T Consensus 48 l~~L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~l~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l 120 (680)
T 1ziw_A 48 YSQLTSLDVGFNTI-SK-LEPELCQKLPMLKVLNLQHN--ELSQLSDKTF-AFCTNLTELHLMSN-SIQKIKNNP-FVKQ 120 (680)
T ss_dssp GTTCSEEECCSSCC-CC-CCTTHHHHCTTCCEEECCSS--CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCSCT-TTTC
T ss_pred CCcCcEEECCCCcc-Cc-cCHHHHhcccCcCEEECCCC--ccCccChhhh-ccCCCCCEEECCCC-ccCccChhH-cccc
Confidence 46778888876532 11 01123456788888888875 3332111112 35778888888876 333211001 2357
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++......+ ..+++|++|+++++.
T Consensus 121 ~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 121 KNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNNK 156 (680)
T ss_dssp TTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-cccccCchhh-cccccCCEEEccCCc
Confidence 78888888876 4443222222 367888888888875
No 103
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.97 E-value=5.1e-05 Score=62.89 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=6.5
Q ss_pred cCCCccEEEecCC
Q 028697 103 KLTKLQTLVLRQD 115 (205)
Q Consensus 103 ~~~~L~~L~l~~~ 115 (205)
.+++|++|+++++
T Consensus 102 ~l~~L~~L~Ls~n 114 (477)
T 2id5_A 102 GLSNLTKLDISEN 114 (477)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 3455555555543
No 104
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.96 E-value=8e-06 Score=59.68 Aligned_cols=108 Identities=23% Similarity=0.173 Sum_probs=57.2
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 159 (205)
.+++|++++.. +..-....++..+++|++|+++++ .++......+ ..+++|+.|+++++ .++...... ...+++
T Consensus 30 ~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~ 103 (192)
T 1w8a_A 30 HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN--QLTGIEPNAF-EGASHIQELQLGEN-KIKEISNKM-FLGLHQ 103 (192)
T ss_dssp TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS--CCCCBCTTTT-TTCTTCCEEECCSC-CCCEECSSS-STTCTT
T ss_pred CCCEEECCCCc-CCccCCccccccCCCCCEEECCCC--CCCCcCHhHc-CCcccCCEEECCCC-cCCccCHHH-hcCCCC
Confidence 56777776643 211000012456777888888775 3432111122 34677888888775 443211111 134677
Q ss_pred CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
|++|+++++ .++...-..+ ..+++|++|++++.+
T Consensus 104 L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 104 LKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTCC
T ss_pred CCEEECCCC-cCCeeCHHHh-hcCCCCCEEEeCCCC
Confidence 888888775 5543211112 256778888887765
No 105
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.95 E-value=5e-05 Score=59.91 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=16.7
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++. +......+++|++|+++++.
T Consensus 239 l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 239 TPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp STTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSSC
T ss_pred CCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCCc
Confidence 455555555554 3331 11111245556666665554
No 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.95 E-value=3.2e-05 Score=63.60 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=16.6
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++. +.. ...+++|++|+++++.
T Consensus 184 l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 184 LSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDLSGNH 218 (440)
T ss_dssp CSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEECTTSC
T ss_pred ccccCeecCCCC-cCcc--ccc-cCCCcccCEEECCCCc
Confidence 455555555544 3331 111 1245566666666654
No 107
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.94 E-value=3.1e-05 Score=68.26 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=18.9
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 142 (205)
..+++|++|+++++ .++......+ ..+++|+.|+++++
T Consensus 220 ~~l~~L~~L~Ls~n--~l~~~~~~~l-~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 220 GDCSALQHLDISGN--KLSGDFSRAI-STCTELKLLNISSN 257 (768)
T ss_dssp TTCCSCCEEECCSS--CCCSCHHHHT-TTCSSCCEEECCSS
T ss_pred ccCCCCCEEECcCC--cCCCcccHHH-hcCCCCCEEECCCC
Confidence 44556666666654 3433222222 23556666666554
No 108
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.93 E-value=1.1e-05 Score=71.84 Aligned_cols=112 Identities=21% Similarity=0.138 Sum_probs=47.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHH-HHhc
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHG 156 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~-l~~~ 156 (205)
+.+|++|+++++..... .-...+..+++|+.|+++++ .++......+ ..+++|+.|+++++ .+++..... ....
T Consensus 47 l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N--~l~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSS--KIYFLHPDAF-QGLFHLFELRLYFC-GLSDAVLKDGYFRN 121 (844)
T ss_dssp CCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTC--CCCEECTTSS-CSCSSCCCEECTTC-CCSSCCSTTCCCSS
T ss_pred cccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCC--cCcccCHhHc-cCCcccCEeeCcCC-CCCcccccCccccc
Confidence 34566666665522110 00112345566666666654 2322111111 23556666666654 333211100 0123
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++..........+++|++|+++++.
T Consensus 122 L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 122 LKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc
Confidence 555666666554 33322111112245556666655543
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.93 E-value=3.3e-05 Score=65.83 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|++++.. ++. .-...+..+++|++|+++++ .++.-. ......+++|+.|+++++ .++.-... ....++
T Consensus 52 ~~~~~LdLs~N~-i~~-l~~~~f~~l~~L~~L~Ls~N--~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~~-~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNP-LRH-LGSYSFFSFPELQVLDLSRC--EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALG-AFSGLS 124 (635)
T ss_dssp TTCCEEECTTSC-CCE-ECTTTTTTCTTCCEEECTTC--CCCEEC-TTTTTTCTTCCEEECTTC-CCCEECGG-GGTTCT
T ss_pred cCCCEEEeeCCC-CCC-CCHHHHhCCCCCCEEECCCC--cCCCcC-hhHhcCCCCCCEEEccCC-cCCCCCHH-HhcCCC
Confidence 368999998754 221 00123567899999999997 444210 111245789999999997 45421111 134689
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++.-.-.. ...+++|++|+++++.
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL 159 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCCCChhh-hhcCcccCeeccccCc
Confidence 9999999987 554321111 2478999999999986
No 110
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=96.90 E-value=2.5e-05 Score=60.04 Aligned_cols=108 Identities=20% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|+++++.- +.- ....+..+++|++|+++++ .++......+ ..+++|+.|+++++ .++...... ...++
T Consensus 28 ~~l~~L~ls~n~l-~~~-~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPL-RHL-GSYSFFSFPELQVLDLSRC--EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGA-FSGLS 100 (276)
T ss_dssp TTCCEEECTTCCC-CEE-CTTTTTTCTTCSEEECTTC--CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTT-TTTCT
T ss_pred CCccEEECCCCcc-ccc-CHhHhccccCCcEEECCCC--cCCccCHHHc-cCCcCCCEEECCCC-ccCccChhh-hcCCc
Confidence 3689999987642 211 0123456899999999986 4443211122 45789999999986 444322111 24578
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++...-.. ...+++|++|+++++.
T Consensus 101 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 101 SLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL 135 (276)
T ss_dssp TCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC
T ss_pred cccEEECCCC-CccccCchh-cccCCCCCEEECcCCc
Confidence 9999999886 444322111 2368999999999986
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.00029 Score=62.96 Aligned_cols=107 Identities=19% Similarity=0.136 Sum_probs=59.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC-CCH-HHHHHHH------hcCcccceeeccCCCCCCHHH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ-LED-NAVEAIA------NSCHDLQDLDLSKSFKLSDRS 149 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~-~~l~~l~------~~~~~L~~L~l~~~~~l~~~~ 149 (205)
+.+|++|+++++..... +...+..+++|+.|+++.+ . ++. .....+. ..+++|+.|+++++ .++ .
T Consensus 490 L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N--~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ 562 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACN--RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--E 562 (876)
T ss_dssp CTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTC--TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--B
T ss_pred CCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCC--CCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--c
Confidence 45677888876542111 1133456778888888775 3 554 2222222 23357888887775 444 2
Q ss_pred HHH--HHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 150 LYA--LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 150 ~~~--l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+.. ....+++|++|+++++ .++ .+. ....+++|++|+++++.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSC
T ss_pred cCChhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCc
Confidence 211 2345677777777765 454 222 22356666777766664
No 112
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.89 E-value=5.5e-05 Score=64.73 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=49.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+..|++|+++++.- +. .....+..+++|+.|+++++ .++. ....+...+++|+.|+++++ .++...-.. ...+
T Consensus 98 l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n--~l~~-l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l 170 (597)
T 3oja_B 98 AHTIQKLYMGFNAI-RY-LPPHVFQNVPLLTVLVLERN--DLSS-LPRGIFHNTPKLTTLSMSNN-NLERIEDDT-FQAT 170 (597)
T ss_dssp CTTCCEEECCSSCC-CC-CCTTTTTTCTTCCEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTC
T ss_pred CCCCCEEECCCCcC-CC-CCHHHHcCCCCCCEEEeeCC--CCCC-CCHHHhccCCCCCEEEeeCC-cCCCCChhh-hhcC
Confidence 34566666665431 11 01122345566666666664 3331 11111234566677766665 332211111 1335
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++... ...+++|++|+++++.
T Consensus 171 ~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 171 TSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL 203 (597)
T ss_dssp TTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC
T ss_pred CcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc
Confidence 66777777665 444322 1245566666655553
No 113
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=96.87 E-value=5.8e-05 Score=59.33 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=43.3
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhc
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~ 182 (205)
.+++|++|+++++ .++......+...+++|+.|+++++ .++... . ...+++|++|+++++ .++.-.- . ...
T Consensus 142 ~l~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~-~~~l~~L~~L~Ls~N-~l~~l~~-~-~~~ 212 (317)
T 3o53_A 142 CRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--G-QVVFAKLKTLDLSSN-KLAFMGP-E-FQS 212 (317)
T ss_dssp GGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--C-CCCCTTCCEEECCSS-CCCEECG-G-GGG
T ss_pred ccCCCCEEECCCC--CCCcccHHHHhhccCcCCEEECCCC-cCcccc--c-ccccccCCEEECCCC-cCCcchh-h-hcc
Confidence 3456666666654 3433222233334566666666665 333210 0 012567777777665 4542111 1 235
Q ss_pred CCCCCeEeccCCc
Q 028697 183 CRKLKILNLCGCV 195 (205)
Q Consensus 183 ~~~L~~L~l~~c~ 195 (205)
+++|++|+++++.
T Consensus 213 l~~L~~L~L~~N~ 225 (317)
T 3o53_A 213 AAGVTWISLRNNK 225 (317)
T ss_dssp GTTCSEEECTTSC
T ss_pred cCcccEEECcCCc
Confidence 6777777777765
No 114
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.87 E-value=4.3e-05 Score=63.02 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=7.8
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|+++++.
T Consensus 216 ~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 216 PLVGLEELEMSGNH 229 (452)
T ss_dssp TCTTCCEEECTTSC
T ss_pred ccccccEEECcCCc
Confidence 44556666665554
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.85 E-value=0.00018 Score=61.34 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=70.2
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+.+|+.|+++++. ++ .+...+..+++|+.|+++++ .++. +..+ ..+++|+.|+++++ .++..........+
T Consensus 462 l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N--~l~~--lp~l-~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l 532 (567)
T 1dce_A 462 LLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDN--ALEN--VDGV-ANLPRLQELLLCNN-RLQQSAAIQPLVSC 532 (567)
T ss_dssp GTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSS--CCCC--CGGG-TTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred cccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCC--CCCC--Cccc-CCCCCCcEEECCCC-CCCCCCCcHHHhcC
Confidence 4579999999864 22 12234567899999999997 4553 2233 45899999999987 55433101113468
Q ss_pred CCCCEEeecCCCCCCHH--HHHHHHhcCCCCCeEec
Q 028697 158 PNLTRLNISGCTSFSDH--ALAYLCGFCRKLKILNL 191 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~--~l~~l~~~~~~L~~L~l 191 (205)
++|++|+++++ .++.. ....+...+|+|+.|++
T Consensus 533 ~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 533 PRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 99999999887 55432 23345556899999864
No 116
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=96.85 E-value=4.2e-05 Score=62.89 Aligned_cols=37 Identities=22% Similarity=0.019 Sum_probs=17.5
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQD 115 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 115 (205)
+.+|++|+++++..+..- ....+..+++|++|+++++
T Consensus 159 l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp CTTCCEEECCCCTTCCEE-CTTTTTTCSSCCEEECTTS
T ss_pred CcccCEeCCCCCCCccee-CcchhhcccccCeecCCCC
Confidence 345666666654332210 0112334556666666554
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.85 E-value=0.00034 Score=57.94 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=26.2
Q ss_pred CcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 131 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|+.|+++++ .++.-. ...+++|++|+++++ .++.- . ...+++|++|++++|.
T Consensus 105 l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEI---D-VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCC---C-CTTCTTCCEEECTTCS
T ss_pred CCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-cccee---c-cccCCcCCEEECCCCC
Confidence 455555555554 332211 233455666665554 34331 1 2245666666666664
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=96.85 E-value=0.0004 Score=57.52 Aligned_cols=98 Identities=18% Similarity=0.087 Sum_probs=48.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...+++|+++++.-... . ...+++|++|+++++ .++.- .+ ..+++|+.|+++++ .++.-. ...+
T Consensus 84 l~~L~~L~Ls~N~l~~~----~-~~~l~~L~~L~L~~N--~l~~l---~~-~~l~~L~~L~l~~N-~l~~l~----l~~l 147 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNL----D-VTPLTKLTYLNCDTN--KLTKL---DV-SQNPLLTYLNCARN-TLTEID----VSHN 147 (457)
T ss_dssp CTTCSEEECCSSCCSCC----C-CTTCTTCCEEECCSS--CCSCC---CC-TTCTTCCEEECTTS-CCSCCC----CTTC
T ss_pred CCCCCEEECcCCCCcee----e-cCCCCcCCEEECCCC--cCCee---cC-CCCCcCCEEECCCC-ccceec----cccC
Confidence 34556666655432111 1 335566666666664 33321 12 34566666666665 333311 2345
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++..++... ...+++|++|+++++.
T Consensus 148 ~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp TTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC
T ss_pred CcCCEEECCCCCcccccc----cccCCcCCEEECCCCc
Confidence 666666666653333221 1245666666666654
No 119
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.83 E-value=0.00012 Score=57.61 Aligned_cols=37 Identities=27% Similarity=0.168 Sum_probs=15.9
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++......+ ..+++|++|+++++.
T Consensus 215 l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 215 LNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK 251 (330)
T ss_dssp CTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc
Confidence 455555555544 3332211111 234555555555543
No 120
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.82 E-value=6.1e-05 Score=62.14 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=17.5
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++.... .....+++|++|++++.+
T Consensus 265 l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 265 LASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence 455666666554 3332111 111245566666666554
No 121
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.80 E-value=0.0061 Score=51.11 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=62.5
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHH--HhcCCCCCEEeecCCCCCCHHH-HH
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL--AHGCPNLTRLNISGCTSFSDHA-LA 177 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~it~~~-l~ 177 (205)
....++|+.|+++.+ .++. .-..+...+++|+.|+++++ .+++...... ...+++|++|+++++ .++.-. ..
T Consensus 306 ~~~~~~L~~L~l~~n--~l~~-ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 380 (549)
T 2z81_A 306 YSLLEKVKRITVENS--KVFL-VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG 380 (549)
T ss_dssp HHHSTTCCEEEEESS--CCCC-CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH
T ss_pred hhhcccceEEEeccC--cccc-CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccch
Confidence 344578888888886 3331 11233346899999999997 7776544321 245799999999997 666432 22
Q ss_pred HHHhcCCCCCeEeccCCc
Q 028697 178 YLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 178 ~l~~~~~~L~~L~l~~c~ 195 (205)
.....+++|++|++++|.
T Consensus 381 ~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNT 398 (549)
T ss_dssp HHGGGCTTCCEEECTTCC
T ss_pred hhhhcCCCCCEEECCCCC
Confidence 345589999999999985
No 122
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.69 E-value=7e-05 Score=64.78 Aligned_cols=110 Identities=23% Similarity=0.101 Sum_probs=69.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
+..|++|+++++.- +. .....+..+++|++|+++++ .++.-....+ ..+++|+.|+++++ .++...... ...+
T Consensus 72 l~~L~~L~L~~n~l-~~-l~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l 144 (680)
T 1ziw_A 72 LPMLKVLNLQHNEL-SQ-LSDKTFAFCTNLTELHLMSN--SIQKIKNNPF-VKQKNLITLDLSHN-GLSSTKLGT-QVQL 144 (680)
T ss_dssp CTTCCEEECCSSCC-CC-CCTTTTTTCTTCSEEECCSS--CCCCCCSCTT-TTCTTCCEEECCSS-CCSCCCCCS-SSCC
T ss_pred ccCcCEEECCCCcc-Cc-cChhhhccCCCCCEEECCCC--ccCccChhHc-cccCCCCEEECCCC-cccccCchh-hccc
Confidence 57899999987642 21 00123457899999999986 3432111122 35789999999987 443321111 1357
Q ss_pred CCCCEEeecCCCCCCHHHHHHHH-hcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLC-GFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~-~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++......+. ..+++|++|+++++.
T Consensus 145 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 145 ENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp TTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ccCCEEEccCC-cccccCHHHhhccccccccEEECCCCc
Confidence 89999999886 45433222222 246899999999885
No 123
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.68 E-value=7.3e-05 Score=62.47 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=16.6
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++. +......+++|++|++++++
T Consensus 213 l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 213 AAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp GTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred CCCccEEEecCC-cCcc--cchhhccCCCCCEEEcCCCC
Confidence 455555555554 3331 11112234555666665554
No 124
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.67 E-value=0.00033 Score=60.41 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=66.2
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCC-CCH-HHHHHHHh-----cCcccceeeccCCCCCCHHHH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ-LED-NAVEAIAN-----SCHDLQDLDLSKSFKLSDRSL 150 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~-~~l~~l~~-----~~~~L~~L~l~~~~~l~~~~~ 150 (205)
+.+|++|+++++.... .+......+++|++|+++++ . ++. .....+.. .+++|+.|+++++ .++ .+
T Consensus 248 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n--~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~i 320 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACN--RGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TF 320 (636)
T ss_dssp CTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTC--TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SC
T ss_pred cCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCC--CCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--cc
Confidence 5678899998764221 11133456789999999986 4 666 44444443 2488999999886 554 22
Q ss_pred HH--HHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 151 YA--LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 151 ~~--l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
.. ....+++|++|+++++ .++.. +.. ...+++|++|+++++.
T Consensus 321 p~~~~l~~l~~L~~L~L~~N-~l~g~-ip~-~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYN-QLEGK-LPA-FGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSC-CCEEE-CCC-CEEEEEESEEECCSSE
T ss_pred CchhhhccCCCCCEEeCcCC-cCccc-hhh-hCCCCCCCEEECCCCc
Confidence 22 3346788999998876 45411 111 1245666677666664
No 125
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.67 E-value=0.0001 Score=61.05 Aligned_cols=14 Identities=21% Similarity=0.012 Sum_probs=7.2
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|++++++
T Consensus 318 ~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 318 SVGNLETLILDSNP 331 (477)
T ss_dssp CGGGCCEEECCSSC
T ss_pred CCcccCEEEccCCC
Confidence 34555555555544
No 126
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.66 E-value=0.00011 Score=61.31 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=43.1
Q ss_pred cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhc
Q 028697 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (205)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~ 182 (205)
.+++|+.|+++++ .++......+...+++|+.|+++++ .++... . ...+++|++|+++++ .++.-.- . ...
T Consensus 142 ~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~--~-~~~l~~L~~L~Ls~N-~l~~~~~-~-~~~ 212 (487)
T 3oja_A 142 CRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--G-QVVFAKLKTLDLSSN-KLAFMGP-E-FQS 212 (487)
T ss_dssp GGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--C-CCCCTTCCEEECCSS-CCCEECG-G-GGG
T ss_pred CCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCCC-cccccc--c-cccCCCCCEEECCCC-CCCCCCH-h-HcC
Confidence 3556666666654 3443222333334566666666665 333210 0 012566777777665 4543111 1 235
Q ss_pred CCCCCeEeccCCc
Q 028697 183 CRKLKILNLCGCV 195 (205)
Q Consensus 183 ~~~L~~L~l~~c~ 195 (205)
+++|++|+++++.
T Consensus 213 l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 213 AAGVTWISLRNNK 225 (487)
T ss_dssp GTTCSEEECTTSC
T ss_pred CCCccEEEecCCc
Confidence 6777777777765
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.64 E-value=0.0001 Score=64.58 Aligned_cols=105 Identities=24% Similarity=0.182 Sum_probs=67.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...|+.|+++++.... +..-...+++|++|+|+++ .++ ..-..+ ..+++|+.|+|+++ .++ .+-.-...+
T Consensus 223 l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N--~l~-~lp~~~-~~l~~L~~L~Ls~N-~l~--~lp~~~~~l 292 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGN--SLT-ELPAEI-KNLSNLRVLDLSHN-RLT--SLPAELGSC 292 (727)
T ss_dssp CCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTS--CCS-CCCGGG-GGGTTCCEEECTTS-CCS--SCCSSGGGG
T ss_pred CCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCC--cCc-ccChhh-hCCCCCCEEeCcCC-cCC--ccChhhcCC
Confidence 4568899998765321 1111226889999999986 444 111223 45789999999987 454 111112457
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++. +-.-...+++|++|+++++.
T Consensus 293 ~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCCc
Confidence 89999999886 5542 21113468899999999887
No 128
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=96.63 E-value=7.7e-05 Score=58.02 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=42.8
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|+.|+++++ .++.-.. .....+++|+.|+++++ .++.-.. .+...+++|++|+++++ .++.-. ..+..
T Consensus 97 ~~l~~L~~L~l~~N--~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~ 169 (290)
T 1p9a_G 97 QTLPALTVLDVSFN--RLTSLPL-GALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELP-AGLLN 169 (290)
T ss_dssp TTCTTCCEEECCSS--CCCCCCS-STTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCC-TTTTT
T ss_pred ccCCCCCEEECCCC--cCcccCH-HHHcCCCCCCEEECCCC-CCCccCh-hhcccccCCCEEECCCC-cCCccC-HHHhc
Confidence 34566666666664 3331100 11124566777777665 3331110 11234567777777665 444211 11123
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
.+++|++|+++++.
T Consensus 170 ~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 170 GLENLDTLLLQENS 183 (290)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CcCCCCEEECCCCc
Confidence 56777777777765
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.61 E-value=9.6e-05 Score=55.06 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=68.1
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 159 (205)
.+++|+++++. ++.-.....+..+++|+.|+++++ .++.-.-..+ ..+++|+.|+++++ .++...-. ....+++
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN--KITDIEEGAF-EGASGVNEILLTSN-RLENVQHK-MFKGLES 106 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS--CCCEECTTTT-TTCTTCCEEECCSS-CCCCCCGG-GGTTCSS
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC--cCCEECHHHh-CCCCCCCEEECCCC-ccCccCHh-HhcCCcC
Confidence 45788887754 221100123567899999999986 4543211122 35789999999986 44322111 1245899
Q ss_pred CCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 160 L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
|++|+++++ .++...-..+ ..+++|++|+++++.
T Consensus 107 L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 107 LKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTSC
T ss_pred CCEEECCCC-cCCeECHhHc-CCCccCCEEECCCCc
Confidence 999999887 5553221222 368999999999986
No 130
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.58 E-value=0.00024 Score=60.15 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=16.9
Q ss_pred CCCCCEEeecCCCCCCHHHHHHHHhcC-CCCCeEeccCCc
Q 028697 157 CPNLTRLNISGCTSFSDHALAYLCGFC-RKLKILNLCGCV 195 (205)
Q Consensus 157 ~~~L~~L~l~~~~~it~~~l~~l~~~~-~~L~~L~l~~c~ 195 (205)
+++|++|+++++ .++... .... ++|++|+++++.
T Consensus 427 l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N~ 461 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNNR 461 (562)
T ss_dssp CTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSSC
T ss_pred cccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCCc
Confidence 455555555554 444211 1122 466666666664
No 131
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=96.58 E-value=8.2e-05 Score=57.87 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=35.7
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
..+++|++|+++++ .++.- .......+++|+.|+++++ .++.-.- .+...+++|++|+++++ .++. +..-..
T Consensus 121 ~~l~~L~~L~L~~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~--ip~~~~ 192 (290)
T 1p9a_G 121 RGLGELQELYLKGN--ELKTL-PPGLLTPTPKLEKLSLANN-NLTELPA-GLLNGLENLDTLLLQEN-SLYT--IPKGFF 192 (290)
T ss_dssp TTCTTCCEEECTTS--CCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSS-CCCC--CCTTTT
T ss_pred cCCCCCCEEECCCC--CCCcc-ChhhcccccCCCEEECCCC-cCCccCH-HHhcCcCCCCEEECCCC-cCCc--cChhhc
Confidence 34556666666554 22210 0111123455666666554 2321000 11123456666666554 3331 111111
Q ss_pred cCCCCCeEeccCCc
Q 028697 182 FCRKLKILNLCGCV 195 (205)
Q Consensus 182 ~~~~L~~L~l~~c~ 195 (205)
..++|+++++.+.+
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 33456666665544
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.55 E-value=9.4e-05 Score=59.27 Aligned_cols=110 Identities=19% Similarity=0.099 Sum_probs=51.8
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
..+|++|+++++.- +.- ....+..+++|++|+++++ .++.- .......+++|+.|+++++ .++...-.. ...+
T Consensus 63 l~~L~~L~L~~N~i-~~i-~~~~~~~l~~L~~L~Ls~N--~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~~~~~-~~~l 135 (361)
T 2xot_A 63 LTNLHSLLLSHNHL-NFI-SSEAFVPVPNLRYLDLSSN--HLHTL-DEFLFSDLQALEVLLLYNN-HIVVVDRNA-FEDM 135 (361)
T ss_dssp CTTCCEEECCSSCC-CEE-CTTTTTTCTTCCEEECCSS--CCCEE-CTTTTTTCTTCCEEECCSS-CCCEECTTT-TTTC
T ss_pred ccccCEEECCCCcC-Ccc-ChhhccCCCCCCEEECCCC--cCCcC-CHHHhCCCcCCCEEECCCC-cccEECHHH-hCCc
Confidence 35567777765432 110 0112345667777777765 33321 0111234567777777765 333211011 1345
Q ss_pred CCCCEEeecCCCCCCHHHHHHHH--hcCCCCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLC--GFCRKLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~--~~~~~L~~L~l~~c~ 195 (205)
++|++|+++++ .++.-....+. ..+++|++|+++++.
T Consensus 136 ~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 136 AQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred ccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 66777777665 44431111110 246667777776654
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.54 E-value=4.4e-05 Score=61.23 Aligned_cols=107 Identities=22% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCceEecCCCCCCCHHHHHHHHh-cCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 80 GLTHLSLSWCKNNMNNLVLSLAP-KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
.++.|+++++. ++.-. ...+. .+++|+.|+++.+ .++.-.-..+ ..+++|+.|+++++ .++.-.- .....++
T Consensus 40 ~l~~L~Ls~N~-l~~l~-~~~~~~~l~~L~~L~L~~N--~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHNN-LSRLR-AEWTPTRLTNLHSLLLSHN--HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLDE-FLFSDLQ 112 (361)
T ss_dssp TCSEEECCSSC-CCEEC-TTSSSSCCTTCCEEECCSS--CCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCT
T ss_pred CCCEEECCCCC-CCccC-hhhhhhcccccCEEECCCC--cCCccChhhc-cCCCCCCEEECCCC-cCCcCCH-HHhCCCc
Confidence 46888888754 22210 11233 7899999999986 4543211122 35789999999986 4542111 1124578
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++...-..+ ..+++|++|+++++.
T Consensus 113 ~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVDRNAF-EDMAQLQKLYLSQNQ 147 (361)
T ss_dssp TCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cccEECHHHh-CCcccCCEEECCCCc
Confidence 9999999887 6654222222 368999999999886
No 134
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.47 E-value=2e-05 Score=61.94 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=51.3
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcC
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 157 (205)
...|++|+++++..+... +...+..+++|++|+++++ .++......+ ..+++|+.|+++++ .++...-. ....+
T Consensus 75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~-~~l~~L~~L~Ls~N-~l~~~~p~-~~~~l 148 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHT--NVSGAIPDFL-SQIKTLVTLDFSYN-ALSGTLPP-SISSL 148 (313)
T ss_dssp CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEE--CCEEECCGGG-GGCTTCCEEECCSS-EEESCCCG-GGGGC
T ss_pred CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCC--eeCCcCCHHH-hCCCCCCEEeCCCC-ccCCcCCh-HHhcC
Confidence 456677777631111110 1112345677777777664 3331111122 24567777777665 22211000 11345
Q ss_pred CCCCEEeecCCCCCCHHHHHHHHhcCC-CCCeEeccCCc
Q 028697 158 PNLTRLNISGCTSFSDHALAYLCGFCR-KLKILNLCGCV 195 (205)
Q Consensus 158 ~~L~~L~l~~~~~it~~~l~~l~~~~~-~L~~L~l~~c~ 195 (205)
++|++|+++++ .++...-..+. .++ +|++|+++++.
T Consensus 149 ~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 149 PNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRNR 185 (313)
T ss_dssp TTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSSE
T ss_pred CCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCCe
Confidence 67777777665 44322112222 333 66666666654
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.26 E-value=0.0028 Score=48.73 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=57.7
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHH-HHHHHHhcCcccceeeccCCCCCCH------HHH
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN-AVEAIANSCHDLQDLDLSKSFKLSD------RSL 150 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~l~~------~~~ 150 (205)
.+.|+.|+|++..-..-..+......+++|+.|+|+++ .+++. .+..+. .+ +|+.|.+.++. +.. ...
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N--~i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~~y~ 243 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN--ELKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQSTYI 243 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS--CCCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC--ccCCchhhhhcc-cC-CcceEEccCCc-CccccCcchhHH
Confidence 67899999998754332333446678999999999986 55542 233332 23 89999999874 432 344
Q ss_pred HHHHhcCCCCCEEee
Q 028697 151 YALAHGCPNLTRLNI 165 (205)
Q Consensus 151 ~~l~~~~~~L~~L~l 165 (205)
..+...+|+|+.|+=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 557778999999984
No 136
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.26 E-value=0.00024 Score=63.26 Aligned_cols=86 Identities=22% Similarity=0.118 Sum_probs=41.6
Q ss_pred cCCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHH-HHhcCcccceeeccCCCCCCHHHHHHHHhc
Q 028697 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEA-IANSCHDLQDLDLSKSFKLSDRSLYALAHG 156 (205)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 156 (205)
+.+|++|+++++.-... ....+..+++|++|+++.+ .+++..+.. ....+++|+.|+++++ .++..........
T Consensus 72 L~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFL--HPDAFQGLFHLFELRLYFC--GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGK 146 (844)
T ss_dssp CTTCCEEECTTCCCCEE--CTTSSCSCSSCCCEECTTC--CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGT
T ss_pred CCCCCEEECCCCcCccc--CHhHccCCcccCEeeCcCC--CCCcccccCccccccCCCCEEECCCC-cccccccchhHhh
Confidence 44567777766532110 1123345667777777665 333211111 1124566777777665 3332111111234
Q ss_pred CCCCCEEeecCC
Q 028697 157 CPNLTRLNISGC 168 (205)
Q Consensus 157 ~~~L~~L~l~~~ 168 (205)
+++|++|+++++
T Consensus 147 L~~L~~L~Ls~N 158 (844)
T 3j0a_A 147 LNSLKSIDFSSN 158 (844)
T ss_dssp CSSCCEEEEESS
T ss_pred CCCCCEEECCCC
Confidence 666777777664
No 137
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.26 E-value=0.00017 Score=56.91 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=54.0
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|+++++..... .......+++|+.|+++++ .++......+ ..+++|+.|+++++ .++. +..-...++
T Consensus 193 ~~L~~L~l~~n~i~~~--~~~~l~~l~~L~~L~L~~N--~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~ 264 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAI--ELEDLLRYSKLYRLGLGHN--QIRMIENGSL-SFLPTLRELHLDNN-KLSR--VPAGLPDLK 264 (332)
T ss_dssp SSCSCCBCCSSCCCCC--CTTSSTTCTTCSCCBCCSS--CCCCCCTTGG-GGCTTCCEEECCSS-CCCB--CCTTGGGCT
T ss_pred CCCCEEECCCCcCCcc--CHHHhcCCCCCCEEECCCC--cCCcCChhHh-hCCCCCCEEECCCC-cCee--cChhhhcCc
Confidence 4567777766432110 0112345667777777765 3332111112 34667777777765 3431 111123467
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhc-----CCCCCeEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGF-----CRKLKILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~-----~~~L~~L~l~~c~ 195 (205)
+|++|+++++ .++......+... .+.|++|++.+++
T Consensus 265 ~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 265 LLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred cCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 7777777665 4554332222211 3556777777665
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.22 E-value=0.00036 Score=50.86 Aligned_cols=84 Identities=20% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (205)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~ 183 (205)
.+++++|+++++ .++. +......+++|+.|+++++ .++...-.. ...+++|++|+++++ .++.-.-..+ ..+
T Consensus 30 ~~~l~~L~L~~n--~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l 101 (193)
T 2wfh_A 30 PRDVTELYLDGN--QFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYN-RLRCIPPRTF-DGL 101 (193)
T ss_dssp CTTCCEEECCSS--CCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTTTT-TTC
T ss_pred CCCCCEEECCCC--cCch--hHHHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCHHHh-CCC
Confidence 368999999986 4442 1122246789999999986 454321111 245789999999886 5654322222 368
Q ss_pred CCCCeEeccCCc
Q 028697 184 RKLKILNLCGCV 195 (205)
Q Consensus 184 ~~L~~L~l~~c~ 195 (205)
++|++|+++++.
T Consensus 102 ~~L~~L~L~~N~ 113 (193)
T 2wfh_A 102 KSLRLLSLHGND 113 (193)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEECCCCC
Confidence 999999999976
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.04 E-value=0.00035 Score=49.84 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=27.4
Q ss_pred hcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCC
Q 028697 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC 168 (205)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 168 (205)
..+++|+.|+++++ .++. ........+++|+.|+++++ .++.-.- .....+++|++|+++++
T Consensus 51 ~~l~~L~~L~Ls~N--~l~~-l~~~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 51 DRLTQLTRLDLDNN--QLTV-LPAGVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTCTTCSEEECCSS--CCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred cCcccCCEEECCCC--CcCc-cChhhccCCCCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCC
Confidence 34556666666654 2321 01111123556666666654 2321100 01123556666666554
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.01 E-value=0.00043 Score=49.44 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=56.0
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (205)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~ 183 (205)
.++|++|+++++ .++.. .......+++|+.|+++++ .++...- .....+++|++|+++++ .++...- .....+
T Consensus 27 ~~~l~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESN--KLQSL-PHGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-KLQSLPN-GVFDKL 99 (177)
T ss_dssp CTTCSEEECCSS--CCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCcEEEeCCC--cccEe-CHHHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-CccccCH-HHhhCC
Confidence 478999999986 44421 1112245789999999986 4542111 11245789999999886 5653221 122468
Q ss_pred CCCCeEeccCCc
Q 028697 184 RKLKILNLCGCV 195 (205)
Q Consensus 184 ~~L~~L~l~~c~ 195 (205)
++|++|+++++.
T Consensus 100 ~~L~~L~l~~N~ 111 (177)
T 2o6r_A 100 TQLKELALDTNQ 111 (177)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEECcCCc
Confidence 999999999885
No 141
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.01 E-value=0.0032 Score=54.22 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=43.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~ 184 (205)
++|+.|+++++ .++. +...+++|+.|+++++ .++. +...+++|++|+++++ .++ .+-.....++
T Consensus 221 ~~L~~L~Ls~N--~L~~-----lp~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N-~L~--~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGN--RLTS-----LPVLPSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRN-QLT--RLPESLIHLS 284 (622)
T ss_dssp TTCCEEECCSS--CCSC-----CCCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCC--SCCGGGGGSC
T ss_pred CCCCEEEccCC--ccCc-----CCCCCCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCC-CCC--cCCHHHhhcc
Confidence 56667777665 3332 1134567777777775 3431 1114567888888776 555 2222234678
Q ss_pred CCCeEeccCCc
Q 028697 185 KLKILNLCGCV 195 (205)
Q Consensus 185 ~L~~L~l~~c~ 195 (205)
+|++|++++++
T Consensus 285 ~L~~L~L~~N~ 295 (622)
T 3g06_A 285 SETTVNLEGNP 295 (622)
T ss_dssp TTCEEECCSCC
T ss_pred ccCEEEecCCC
Confidence 88888888776
No 142
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.98 E-value=0.0032 Score=54.22 Aligned_cols=14 Identities=0% Similarity=0.088 Sum_probs=4.9
Q ss_pred chhhhhhHHHHHHH
Q 028697 9 SSEDLNLCFEKMMM 22 (205)
Q Consensus 9 ~~~~~~~~f~~~~~ 22 (205)
.+++...++..|.-
T Consensus 4 ~~~~~~~~w~~W~~ 17 (622)
T 3g06_A 4 DPAEYDAVWSAWRR 17 (622)
T ss_dssp ------CHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 44556666666653
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.94 E-value=0.00035 Score=50.08 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=7.6
Q ss_pred hcCCCccEEEecCC
Q 028697 102 PKLTKLQTLVLRQD 115 (205)
Q Consensus 102 ~~~~~L~~L~l~~~ 115 (205)
..+++|+.|+++++
T Consensus 54 ~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 54 DHLVNLQQLYFNSN 67 (174)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCC
Confidence 34555555555554
No 144
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=95.88 E-value=0.00039 Score=54.79 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=50.9
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~ 184 (205)
++|++|+++++ .++......+ ..+++|+.|+++++ .++...... ...+++|++|+++++ .++. +..-...++
T Consensus 193 ~~L~~L~l~~n--~i~~~~~~~l-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~ 264 (332)
T 2ft3_A 193 ETLNELHLDHN--KIQAIELEDL-LRYSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNN-KLSR--VPAGLPDLK 264 (332)
T ss_dssp SSCSCCBCCSS--CCCCCCTTSS-TTCTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSS-CCCB--CCTTGGGCT
T ss_pred CCCCEEECCCC--cCCccCHHHh-cCCCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCC-cCee--cChhhhcCc
Confidence 46777777664 3332211122 34678889988876 443321111 245789999999887 5652 222234789
Q ss_pred CCCeEeccCCc
Q 028697 185 KLKILNLCGCV 195 (205)
Q Consensus 185 ~L~~L~l~~c~ 195 (205)
+|++|+++++.
T Consensus 265 ~L~~L~l~~N~ 275 (332)
T 2ft3_A 265 LLQVVYLHTNN 275 (332)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCC
Confidence 99999999876
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.82 E-value=0.00024 Score=51.69 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=56.3
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~ 184 (205)
+++++|+++++ .++..........+++|+.|+++++ .++...-.. ...+++|++|+++++ .++...-..+ ..++
T Consensus 29 ~~l~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIKEISNKMF-LGLH 102 (192)
T ss_dssp TTCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSSSS-TTCT
T ss_pred CCCCEEECCCC--cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-cCCccCHHHh-cCCC
Confidence 48999999986 4442111112246789999999987 454321111 245789999999886 6654322222 3689
Q ss_pred CCCeEeccCCc
Q 028697 185 KLKILNLCGCV 195 (205)
Q Consensus 185 ~L~~L~l~~c~ 195 (205)
+|++|+++++.
T Consensus 103 ~L~~L~L~~N~ 113 (192)
T 1w8a_A 103 QLKTLNLYDNQ 113 (192)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 99999999986
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.74 E-value=0.0013 Score=57.72 Aligned_cols=87 Identities=22% Similarity=0.166 Sum_probs=57.5
Q ss_pred HHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697 99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (205)
Q Consensus 99 ~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~ 178 (205)
..+..+++|+.|+++++ .+.. .-..+ ..+++|+.|+|+++ .++ .+-.-...+++|++|+++++ .++ .+-.
T Consensus 218 ~~~~~l~~L~~L~Ls~n--~l~~-l~~~~-~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~--~lp~ 287 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNL--QIFN-ISANI-FKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLT--SLPA 287 (727)
T ss_dssp ----CCCCCCEEECTTS--CCSC-CCGGG-GGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCS--SCCS
T ss_pred hhhccCCCCcEEECCCC--CCCC-CChhh-cCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCC--ccCh
Confidence 34567789999999986 3331 11122 25899999999987 555 11111246899999999987 666 2222
Q ss_pred HHhcCCCCCeEeccCCc
Q 028697 179 LCGFCRKLKILNLCGCV 195 (205)
Q Consensus 179 l~~~~~~L~~L~l~~c~ 195 (205)
-...+++|++|+++++.
T Consensus 288 ~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp SGGGGTTCSEEECCSSC
T ss_pred hhcCCCCCCEEECCCCC
Confidence 23478999999999985
No 147
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.27 E-value=0.0086 Score=51.02 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.7
Q ss_pred CCCCeEeccCC
Q 028697 184 RKLKILNLCGC 194 (205)
Q Consensus 184 ~~L~~L~l~~c 194 (205)
++|++|+++++
T Consensus 160 ~~L~~L~Ls~N 170 (571)
T 3cvr_A 160 TSLEVLSVRNN 170 (571)
T ss_dssp TTCCEEECCSS
T ss_pred CCcCEEECCCC
Confidence 34444444443
No 148
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=94.73 E-value=0.00033 Score=52.56 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=6.8
Q ss_pred hcCCCccEEEecC
Q 028697 102 PKLTKLQTLVLRQ 114 (205)
Q Consensus 102 ~~~~~L~~L~l~~ 114 (205)
..+++|++|++++
T Consensus 77 ~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 77 YNLSKVTHIEIRN 89 (239)
T ss_dssp ESCTTCCEEEEEE
T ss_pred CCCcCCcEEECCC
Confidence 3445555555554
No 149
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=94.61 E-value=0.00039 Score=52.12 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=66.2
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCC
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 158 (205)
..+++|+++++.- +. .....+..+++|++|+++++. .++.-. ......+++|+.|++++|..++.-... ....++
T Consensus 31 ~~l~~L~l~~n~l-~~-i~~~~~~~l~~L~~L~l~~n~-~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIETHL-RT-IPSHAFSNLPNISRIYVSIDV-TLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELP 105 (239)
T ss_dssp TTCCEEEEESCCC-SE-ECTTTTTTCTTCCEEEEECCS-SCCEEC-TTTEESCTTCCEEEEEEETTCCEECTT-SEECCT
T ss_pred CcccEEEEeCCcc-eE-ECHHHccCCCCCcEEeCCCCC-CcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCC
Confidence 4688999887542 21 001234578999999999861 133211 111246789999999873345421111 123578
Q ss_pred CCCEEeecCCCCCCHHHHHHHHhcCCCCC---eEeccCCc
Q 028697 159 NLTRLNISGCTSFSDHALAYLCGFCRKLK---ILNLCGCV 195 (205)
Q Consensus 159 ~L~~L~l~~~~~it~~~l~~l~~~~~~L~---~L~l~~c~ 195 (205)
+|++|+++++ .++. +.. ...+++|+ +|++++++
T Consensus 106 ~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~ 141 (239)
T 2xwt_C 106 LLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNP 141 (239)
T ss_dssp TCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCT
T ss_pred CCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCc
Confidence 9999999886 4443 222 33677888 99999883
No 150
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=94.29 E-value=0.014 Score=48.17 Aligned_cols=10 Identities=10% Similarity=-0.100 Sum_probs=5.2
Q ss_pred CCceEecCCC
Q 028697 80 GLTHLSLSWC 89 (205)
Q Consensus 80 ~l~~L~l~~~ 89 (205)
.+++|+++++
T Consensus 154 ~L~~L~l~~N 163 (454)
T 1jl5_A 154 FLKIIDVDNN 163 (454)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 4555555543
No 151
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=93.68 E-value=0.009 Score=50.89 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=25.1
Q ss_pred CcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCc
Q 028697 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (205)
Q Consensus 131 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~ 195 (205)
+++|+.|+++++ .++. +...+++|++|+++++ .++. +..+ .++|++|+++++.
T Consensus 139 l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N-~L~~--lp~l---~~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 139 PALLEYINADNN-QLTM-----LPELPTSLEVLSVRNN-QLTF--LPEL---PESLEALDVSTNL 191 (571)
T ss_dssp CTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSC--CCCC---CTTCCEEECCSSC
T ss_pred CccccEEeCCCC-ccCc-----CCCcCCCcCEEECCCC-CCCC--cchh---hCCCCEEECcCCC
Confidence 456666666654 3321 1113456666666554 3332 1111 1556666666553
No 152
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=93.58 E-value=0.029 Score=46.22 Aligned_cols=10 Identities=20% Similarity=-0.154 Sum_probs=4.6
Q ss_pred CCceEecCCC
Q 028697 80 GLTHLSLSWC 89 (205)
Q Consensus 80 ~l~~L~l~~~ 89 (205)
.+++|+++++
T Consensus 196 ~L~~L~l~~N 205 (454)
T 1jl5_A 196 FLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 3444554443
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.30 E-value=0.0086 Score=42.42 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcC
Q 028697 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (205)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~ 183 (205)
.++++.|+++++ .++.-.-..+ ..+++|+.|+++++ .++.-.- .....+++|++|+++++ .++.-.- .....+
T Consensus 29 ~~~l~~L~L~~N--~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N-~l~~~~~-~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDN--QITKLEPGVF-DRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDN-QLKSIPR-GAFDNL 101 (170)
T ss_dssp CTTCSEEECCSS--CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred CCCCcEEEcCCC--cCCccChhhh-cCcccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCC-ccCEeCH-HHhcCC
Confidence 378999999986 4442111112 35789999999986 4542111 11245789999999886 5553211 123368
Q ss_pred CCCCeEeccCCc
Q 028697 184 RKLKILNLCGCV 195 (205)
Q Consensus 184 ~~L~~L~l~~c~ 195 (205)
++|++|++++.+
T Consensus 102 ~~L~~L~L~~N~ 113 (170)
T 3g39_A 102 KSLTHIWLLNNP 113 (170)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeCCCC
Confidence 899999999876
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=92.99 E-value=0.013 Score=41.71 Aligned_cols=84 Identities=18% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCC
Q 028697 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (205)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~ 184 (205)
++|+.|+++++ .++.-. ......+++|+.|+++++ .++.-.- .+...+++|++|+++++ .++.-. ......++
T Consensus 33 ~~L~~L~Ls~N--~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN--QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSS--CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CCCcEEEeCCC--CccccC-HHHhcCCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCC-ccceeC-HHHhcccc
Confidence 78999999986 444211 112235789999999986 4543110 11245789999999886 555311 11233688
Q ss_pred CCCeEeccCCc
Q 028697 185 KLKILNLCGCV 195 (205)
Q Consensus 185 ~L~~L~l~~c~ 195 (205)
+|++|++++.+
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 99999998876
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.27 E-value=0.014 Score=46.02 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=5.6
Q ss_pred cCCCccEEEecC
Q 028697 103 KLTKLQTLVLRQ 114 (205)
Q Consensus 103 ~~~~L~~L~l~~ 114 (205)
.+++|+.|+|++
T Consensus 54 ~l~~L~~L~l~~ 65 (347)
T 2ifg_A 54 GLGELRNLTIVK 65 (347)
T ss_dssp SCCCCSEEECCS
T ss_pred cccCCCEEECCC
Confidence 344444444444
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=89.54 E-value=0.19 Score=39.27 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=39.9
Q ss_pred HHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC-CCCCHHHHHHHHhcCCCCC-EEeecCCCCCCHHHH
Q 028697 99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLT-RLNISGCTSFSDHAL 176 (205)
Q Consensus 99 ~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~-~L~l~~~~~it~~~l 176 (205)
.+...|++|+.|+++.+ .++.- -......|++|+.|.+++. ..+.+.+ ...|++|+ .+.+.+ .++.-+-
T Consensus 220 ~l~~~~~~L~~l~L~~n--~i~~I-~~~aF~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 220 LIRDYMPNLVSLDISKT--NATTI-PDFTFAQKKYLLKIKLPHNLKTIGQRV----FSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp HHHHHCTTCCEEECTTB--CCCEE-CTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEEECT--TCCEECT
T ss_pred HHHHhcCCCeEEECCCC--Cccee-cHhhhhCCCCCCEEECCcccceehHHH----hhCChhccEEEEEcc--cceEEch
Confidence 33344666777766653 22210 0111234666777666552 1122222 23466777 777754 2322111
Q ss_pred HHHHhcCCCCCeEeccC
Q 028697 177 AYLCGFCRKLKILNLCG 193 (205)
Q Consensus 177 ~~l~~~~~~L~~L~l~~ 193 (205)
.+ ..+|++|+++++.+
T Consensus 291 ~a-F~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 291 GA-FMGCDNLRYVLATG 306 (329)
T ss_dssp TT-TTTCTTEEEEEECS
T ss_pred hh-hhCCccCCEEEeCC
Confidence 11 23577777777643
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=85.68 E-value=0.83 Score=35.48 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhcCcccceeeccCC--CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCC-eEeccC
Q 028697 119 LEDNAVEAIANSCHDLQDLDLSKS--FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLK-ILNLCG 193 (205)
Q Consensus 119 ~~~~~l~~l~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~-~L~l~~ 193 (205)
+.......+...|++|+.++++++ ..+.+..+ ..|++|++|.+.+. ++.-+-.+ -.+|++|+ ++.+..
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF----~~~~~L~~l~l~~n--i~~I~~~a-F~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF----AQKKYLLKIKLPHN--LKTIGQRV-FSNCGRLAGTLELPA 283 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT----TTCTTCCEEECCTT--CCEECTTT-TTTCTTCCEEEEECT
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh----hCCCCCCEEECCcc--cceehHHH-hhCChhccEEEEEcc
Confidence 444455555556778888887763 22333322 45777888887552 32211111 23677787 777765
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=84.93 E-value=0.1 Score=41.00 Aligned_cols=88 Identities=23% Similarity=0.155 Sum_probs=55.3
Q ss_pred HhcCCCccEEEecC-CCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHH
Q 028697 101 APKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179 (205)
Q Consensus 101 ~~~~~~L~~L~l~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l 179 (205)
...+++|+.|+|++ + .++.- .......+++|+.|+|+++ .++...-. ....+++|++|+|+++ .++.-. ..+
T Consensus 27 l~~~~~L~~L~l~~~n--~l~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~-~~~ 99 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ--HLQHL-ELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLS-WKT 99 (347)
T ss_dssp SCSCSCCSEEECCSCS--SCCEE-CGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCC-STT
T ss_pred CCCCCCeeEEEccCCC--CCCCc-ChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeC-HHH
Confidence 55678899999985 4 44321 1111235789999999997 55431111 1246899999999886 555311 111
Q ss_pred HhcCCCCCeEeccCCcc
Q 028697 180 CGFCRKLKILNLCGCVK 196 (205)
Q Consensus 180 ~~~~~~L~~L~l~~c~~ 196 (205)
....+ |++|++.+.+-
T Consensus 100 ~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPL 115 (347)
T ss_dssp TCSCC-CCEEECCSSCC
T ss_pred cccCC-ceEEEeeCCCc
Confidence 22233 99999998763
No 159
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=82.62 E-value=0.015 Score=46.07 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCC---HHHHHHHHh
Q 028697 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS---DRSLYALAH 155 (205)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~---~~~~~~l~~ 155 (205)
.++++|++++.. ++. .-...+..+++|++|+++++ .+....-......++++..+.+.++..++ ... ..
T Consensus 30 ~~l~~L~Ls~N~-i~~-i~~~~f~~l~~L~~L~Ls~N--~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~----f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRV-IQKGAFSGFGDLEKIEISQN--DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA----FQ 101 (350)
T ss_dssp TTCSEEEEESCC-CSE-ECTTSSTTCTTCCEEEEECC--TTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS----BC
T ss_pred CCCCEEEccCCc-CCC-cCHHHHcCCCCCCEEECcCC--CCCCccChhHhhcchhhhhhhcccCCcccccCchh----hh
Confidence 357788887653 221 00123456788888888876 22210000111234555544333222332 222 23
Q ss_pred cCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 156 ~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 196 (205)
.+++|++|+++++ .++...-... ....++..|++.++.+
T Consensus 102 ~l~~L~~L~l~~n-~l~~~~~~~~-~~~~~l~~l~l~~~~~ 140 (350)
T 4ay9_X 102 NLPNLQYLLISNT-GIKHLPDVHK-IHSLQKVLLDIQDNIN 140 (350)
T ss_dssp CCTTCCEEEEEEE-CCSSCCCCTT-CCBSSCEEEEEESCTT
T ss_pred hcccccccccccc-ccccCCchhh-cccchhhhhhhccccc
Confidence 5678888888775 4432110011 1234566777766554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=81.30 E-value=0.29 Score=39.25 Aligned_cols=56 Identities=23% Similarity=0.532 Sum_probs=25.0
Q ss_pred cCcccceeeccCC-CCCCHHHHHHHHhcCCCCCEEeecC-CCCCCHHHHHHHHhcCCCCCeEeccC
Q 028697 130 SCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISG-CTSFSDHALAYLCGFCRKLKILNLCG 193 (205)
Q Consensus 130 ~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~-~~~it~~~l~~l~~~~~~L~~L~l~~ 193 (205)
.|.+|+.+.+... ..+.+.+ ...|.+|+.+.+.. ...|.+. + -.+|++|+.+++.+
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~---a-F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPES---A-FSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGG---G-GTTCTTCCEEEESS
T ss_pred CCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHh---H-hhCCCCCCEEEECC
Confidence 4556666665431 1222222 13456666666632 1122221 1 22566666666554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=80.46 E-value=0.79 Score=36.63 Aligned_cols=81 Identities=17% Similarity=0.324 Sum_probs=47.7
Q ss_pred HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC-CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHH
Q 028697 100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~ 178 (205)
.+..|.+|+.+.+...-..+.+.. ...|.+|+.+.+... ..+.+.++ ..|++|+.+.+.+. ......
T Consensus 306 aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~----~~~~~~ 373 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPESAF----SNCTALNNIEYSGS----RSQWNA 373 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGGGG----TTCTTCCEEEESSC----HHHHHT
T ss_pred eecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHhHh----hCCCCCCEEEECCc----eeehhh
Confidence 456788999999875312233322 246899999999753 23444443 56999999999764 223333
Q ss_pred HHhcCCCCCeEeccC
Q 028697 179 LCGFCRKLKILNLCG 193 (205)
Q Consensus 179 l~~~~~~L~~L~l~~ 193 (205)
+ ..|.+|+.+.+..
T Consensus 374 ~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 374 I-STDSGLQNLPVAP 387 (394)
T ss_dssp C-BCCCCC-------
T ss_pred h-hccCCCCEEEeCC
Confidence 3 3688898887754
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=72.92 E-value=0.56 Score=37.93 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHhcCCCccEEEecCCCCC------CCHHHHHHHHhcCcccceeeccCC-CCCCHHHHHHHHhcCCCCCEEeecCCCCCC
Q 028697 100 LAPKLTKLQTLVLRQDKPQ------LEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGCTSFS 172 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~------~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~it 172 (205)
.+..|++|+.+.+...... +.+. ....|++|+.+.+.+. ..+.+.+ ...|++|+.+.+.. +++
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c~~L~~l~l~~~i~~I~~~a----F~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPY----CLEGCPKLARFEIPESIRILGQGL----LGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTT----TTTTCTTCCEECCCTTCCEECTTT----TTTCCSCCEEEECT--TCC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHH----HhhCCccCCeEEeCCceEEEhhhh----hcCCCCccEEEECc--ccc
Confidence 3456667777776553111 1111 1235667777776641 1122222 23467777777743 232
Q ss_pred HHHHHHHHhcCCCCCeEeccCC
Q 028697 173 DHALAYLCGFCRKLKILNLCGC 194 (205)
Q Consensus 173 ~~~l~~l~~~~~~L~~L~l~~c 194 (205)
.-+-.++ .+| +|+++.+.+.
T Consensus 336 ~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 336 QINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp EECTTSS-SSS-CCCEEEECCS
T ss_pred EEcHHhC-CCC-CCCEEEEcCC
Confidence 2111112 256 7777777654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=65.47 E-value=0.73 Score=36.84 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=45.2
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCC-CCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHH
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l 179 (205)
+..|.+|+.+.+...-..+.+.. ...|.+|+.+.+... ..+.+.+ ...|.+|+.+.+.. +++.-+-.+
T Consensus 293 F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~--~l~~I~~~a- 361 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPL--SLRKIGANA- 361 (394)
T ss_dssp TTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCT--TCCEECTTT-
T ss_pred ccccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECc--cccEehHHH-
Confidence 44667777777765211222211 235778888888642 1233332 24578888888854 232211112
Q ss_pred HhcCCCCCeEeccCC
Q 028697 180 CGFCRKLKILNLCGC 194 (205)
Q Consensus 180 ~~~~~~L~~L~l~~c 194 (205)
-.+|++|+++++...
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 236888888877543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=59.36 E-value=0.67 Score=36.71 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=28.0
Q ss_pred cCcccceeeccCC--CCCCHHHHHHHHhcCCCCCEEeecC-CCCCCHHHHHHHHhcCCCCCeEecc
Q 028697 130 SCHDLQDLDLSKS--FKLSDRSLYALAHGCPNLTRLNISG-CTSFSDHALAYLCGFCRKLKILNLC 192 (205)
Q Consensus 130 ~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~L~~L~l~~-~~~it~~~l~~l~~~~~~L~~L~l~ 192 (205)
.|.+|+.+.+.+. ..+.+.++ ..|.+|+.+.+.. ...|.+. + -.+|++|+++.+.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~---a-F~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPTALKTIQVY---A-FKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTT---T-TTTCTTCCCCCCC
T ss_pred cccccccccccccccceehhhhh----cCCCCCCEEEcCccccEEHHH---H-hhCCCCCCEEEEC
Confidence 5667777776542 12333322 3467777777742 1222221 1 1357777777664
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=57.03 E-value=1.1 Score=35.42 Aligned_cols=93 Identities=18% Similarity=0.328 Sum_probs=48.6
Q ss_pred HhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHH
Q 028697 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180 (205)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~ 180 (205)
+..|.+|+.+.+...-..+.+. ....|.+|+.+.+... ++.-+-. ....|++|+.+.+.+. .++.-+- ..-
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~~--i~~i~~~-aF~~c~~L~~i~l~~~-~i~~I~~-~aF 306 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYAK--VKTVPYL-LCSGCSNLTKVVMDNS-AIETLEP-RVF 306 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECCC--CSEECTT-TTTTCTTCCEEEECCT-TCCEECT-TTT
T ss_pred ccCCccceEEEcCCCccEeCcc----ccceeehhcccccccc--ceecccc-cccccccccccccccc-ccceehh-hhh
Confidence 3456677777776521112211 1235677888877652 2211111 1246889999999653 3321111 122
Q ss_pred hcCCCCCeEeccCCcccccccc
Q 028697 181 GFCRKLKILNLCGCVKAATDYA 202 (205)
Q Consensus 181 ~~~~~L~~L~l~~c~~~~~d~~ 202 (205)
.+|++|+++.+..--..+.+.+
T Consensus 307 ~~c~~L~~i~lp~~l~~I~~~a 328 (379)
T 4h09_A 307 MDCVKLSSVTLPTALKTIQVYA 328 (379)
T ss_dssp TTCTTCCEEECCTTCCEECTTT
T ss_pred cCCCCCCEEEcCccccEEHHHH
Confidence 4789999998854322244443
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=55.07 E-value=2.3 Score=34.32 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=17.7
Q ss_pred hcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccC
Q 028697 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCG 193 (205)
Q Consensus 155 ~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~ 193 (205)
..|++|+.+.+.. +++.-+-.+ ..+|++|+++.+..
T Consensus 297 ~~c~~L~~l~l~~--~i~~I~~~a-F~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 297 EGCPKLARFEIPE--SIRILGQGL-LGGNRKVTQLTIPA 332 (401)
T ss_dssp TTCTTCCEECCCT--TCCEECTTT-TTTCCSCCEEEECT
T ss_pred hCCccCCeEEeCC--ceEEEhhhh-hcCCCCccEEEECc
Confidence 3466666666643 222111111 13567777776643
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=44.63 E-value=6.8 Score=25.98 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=31.4
Q ss_pred cccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHh
Q 028697 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (205)
Q Consensus 132 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~ 181 (205)
++|+.|+|+++ .++.-.- .+...+++|++|+|.++...-+..+..+..
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~ 78 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPP-GLLDALPALRTAHLGANPWRCDCRLVPLRA 78 (130)
T ss_dssp TTCSEEECTTS-CCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGGHHHHH
T ss_pred cCCCEEECCCC-cCCccCh-hhhhhccccCEEEecCCCeeccCccHHHHH
Confidence 47999999986 4432111 113457899999999887666666655553
No 168
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=33.91 E-value=6.9 Score=30.49 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=35.3
Q ss_pred cccceeeccCCCCCCHHHHHHHHhcCCCCCEEeecCCCCCCHHHHHHHHhcCCCCCeEeccCCcc
Q 028697 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (205)
Q Consensus 132 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~it~~~l~~l~~~~~~L~~L~l~~c~~ 196 (205)
++++.|+++++ .++.-.-. ....+++|++|+++++ .+....=.....+++++.++.+.++.+
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TTCSEEEEESC-CCSEECTT-SSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CCCCEEEccCC-cCCCcCHH-HHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCc
Confidence 58999999986 55421111 1245789999999987 332110001123567777665555443
No 169
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=30.39 E-value=19 Score=16.46 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=9.9
Q ss_pred CchhhhhhHHHHHH
Q 028697 8 LSSEDLNLCFEKMM 21 (205)
Q Consensus 8 ~~~~~~~~~f~~~~ 21 (205)
|.++|++++|+.=|
T Consensus 13 lspddi~qw~s~dp 26 (28)
T 2b3g_B 13 LSPDDIEQWFTEDP 26 (28)
T ss_dssp CCHHHHHHHHHC--
T ss_pred cChHHHHHHhhcCC
Confidence 67888999987544
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.32 E-value=35 Score=21.40 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred HHhcCCCccEEEecCCCCCCCHHHHHHHHhcCcccceeeccC
Q 028697 100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK 141 (205)
Q Consensus 100 l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 141 (205)
.+..|.+|+++.+...-..+.+..+ ..|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcC
Confidence 3446677777777653223333221 3567777777665
Done!