BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028699
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P21052|F11_VACCC Protein F11 OS=Vaccinia virus (strain Copenhagen) GN=F11L PE=3 SV=1
          Length = 354

 Score = 33.9 bits (76), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 30  SSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKT 86
           SS+ +A   +R  S+KR+D       L  HR  L L   +   + EFL Y + +  T
Sbjct: 218 SSNDNAKIAARILSEKRKDTIAHIDTLIQHRQQLELAYYNSCMLTEFLHYCNSYADT 274


>sp|P29888|F11_VACCP Protein F11 OS=Vaccinia virus (strain L-IVP) GN=F7 PE=3 SV=1
          Length = 337

 Score = 33.9 bits (76), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 30  SSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKT 86
           SS+ +A   +R  S+KR+D       L  HR  L L   +   + EFL Y + +  T
Sbjct: 214 SSNDNAKIAARILSEKRKDTIAHIDTLIQHRQQLELAYYNSCMLTEFLHYCNSYAGT 270


>sp|Q02004|GP_DUGBA Envelope glycoprotein OS=Dugbe virus (isolate ArD44313) GN=GP PE=1
            SV=1
          Length = 1551

 Score = 33.1 bits (74), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 3    LVSPPPNTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFC------QYL 56
            L SP   T    S+SP V    T+  +   PSATT SR++    RD    C      +Y 
Sbjct: 1327 LTSPDEFTLHLRSTSPNVVVAETSIIARKGPSATT-SRFKVFSVRDTKKICFEVVEREYC 1385

Query: 57   RNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQN 92
            ++  P   L  C+G  +      L +   T V +QN
Sbjct: 1386 KDCTPD-ELTTCTGVELEPTKDILLEHRGTIVQHQN 1420


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,644,141
Number of Sequences: 539616
Number of extensions: 4102705
Number of successful extensions: 54810
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 51078
Number of HSP's gapped (non-prelim): 3044
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)