Query 028699
Match_columns 205
No_of_seqs 81 out of 83
Neff 2.3
Searched_HMMs 29240
Date Tue Mar 26 02:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 92.6 0.75 2.6E-05 35.2 8.6 70 44-141 25-95 (324)
2 3nrw_A Phage integrase/site-sp 84.3 3.3 0.00011 28.6 6.3 68 46-140 33-102 (117)
3 1a0p_A Site-specific recombina 81.4 4.4 0.00015 30.5 6.5 69 44-140 26-96 (290)
4 2ols_A Phosphoenolpyruvate syn 77.8 1.8 6.2E-05 41.6 4.1 39 120-158 561-629 (794)
5 2x0s_A Pyruvate phosphate diki 73.9 3.5 0.00012 40.5 5.0 24 135-158 683-709 (913)
6 2khq_A Integrase; all-alpha, s 70.4 7.7 0.00026 25.4 4.6 62 48-140 31-94 (110)
7 2kkp_A Phage integrase; SAM-li 68.0 13 0.00043 24.5 5.3 54 61-140 46-101 (117)
8 2zxj_A Transcriptional regulat 67.6 2.4 8.1E-05 31.7 1.8 21 115-135 76-96 (120)
9 2oxo_A Integrase; DNA-binding 67.0 15 0.0005 22.9 5.3 62 47-140 29-93 (103)
10 1vbg_A Pyruvate,orthophosphate 65.3 5.1 0.00017 39.5 4.1 25 134-158 662-689 (876)
11 3zq7_A KDP operon transcriptio 64.6 3.3 0.00011 28.6 1.9 21 114-134 67-87 (102)
12 2xz9_A Phosphoenolpyruvate-pro 62.5 11 0.00038 32.5 5.3 34 117-150 62-117 (324)
13 2z9m_A Response regulator YYCF 62.0 3.6 0.00012 29.6 1.8 21 114-134 75-95 (120)
14 2key_A Putative phage integras 60.4 4.9 0.00017 26.7 2.2 51 63-140 47-101 (112)
15 2eqe_A Tumor necrosis factor, 59.9 6.3 0.00021 27.1 2.6 26 81-106 11-36 (48)
16 2wqd_A Phosphoenolpyruvate-pro 59.6 11 0.00038 35.3 5.1 42 116-157 312-377 (572)
17 3mi9_C Protein TAT; P-TEFB, HI 58.8 2.5 8.4E-05 32.0 0.5 15 154-168 38-52 (86)
18 1kbl_A PPDK, pyruvate phosphat 57.8 7.1 0.00024 38.5 3.6 25 134-158 655-682 (873)
19 1z19_A Integrase; protein-DNA 57.8 14 0.00049 27.7 4.6 64 46-140 28-93 (283)
20 2kiw_A INT protein; alpha, str 56.4 38 0.0013 22.1 6.1 51 63-140 39-91 (111)
21 2kj8_A Putative prophage CPS-5 54.6 46 0.0016 22.4 6.7 51 63-140 45-97 (118)
22 3rjp_A COVR; winged helix-turn 52.5 6.9 0.00024 26.7 1.9 18 114-131 61-78 (96)
23 2kd1_A DNA integration/recombi 52.3 23 0.00078 23.5 4.4 52 62-140 45-99 (118)
24 2hwg_A Phosphoenolpyruvate-pro 52.2 13 0.00044 34.9 4.3 34 116-149 310-365 (575)
25 2kkv_A Integrase; protein stru 51.4 52 0.0018 22.0 7.3 52 61-140 44-98 (121)
26 2pk2_A Cyclin-T1, protein TAT; 51.1 3.2 0.00011 36.0 0.0 6 157-163 327-332 (358)
27 2k4j_A Putative transcriptiona 44.4 17 0.00056 26.3 2.9 21 113-133 79-99 (115)
28 1tac_A TAT protein; transcript 42.8 3.3 0.00011 31.3 -1.0 15 155-169 39-53 (86)
29 2hqn_A Putative transcriptiona 42.0 12 0.0004 26.2 1.8 20 114-133 68-87 (109)
30 1h6z_A Pyruvate phosphate diki 41.2 21 0.00074 35.5 4.1 37 115-158 670-709 (913)
31 4b4t_W RPN10, 26S proteasome r 41.2 5.6 0.00019 33.9 0.0 42 125-166 213-254 (268)
32 1opc_A OMPR, OMPRC; transcript 40.5 11 0.00038 26.3 1.5 20 114-133 70-89 (110)
33 1gxq_A PHOB, phosphate regulon 38.7 16 0.00056 25.3 2.1 19 114-132 70-88 (106)
34 2kj5_A Phage integrase; GFT PS 37.3 67 0.0023 21.0 4.9 50 63-140 46-98 (116)
35 3a2a_A Voltage-gated hydrogen 36.1 15 0.00053 26.0 1.6 22 116-137 37-58 (58)
36 1h1j_S THO1 protein; SAP domai 34.7 27 0.00091 23.4 2.5 26 113-138 25-50 (51)
37 2hwv_A DNA-binding response re 34.1 17 0.00059 26.4 1.7 20 114-133 82-101 (121)
38 2kob_A Uncharacterized protein 33.2 54 0.0019 21.0 3.9 29 112-140 62-92 (108)
39 2khv_A Phage integrase; soluti 32.9 1E+02 0.0036 20.2 5.6 52 60-140 39-94 (106)
40 2kzy_A ZNF216-A20, zfand5 prot 32.1 23 0.00078 25.2 1.9 24 86-109 13-36 (62)
41 1z1b_A Integrase; protein-DNA 32.0 59 0.002 25.5 4.5 62 48-140 103-166 (356)
42 3q9v_A DNA-binding response re 31.6 32 0.0011 25.5 2.8 20 114-133 99-118 (133)
43 3cw1_L U1 small nuclear ribonu 29.5 63 0.0021 23.5 4.0 18 141-158 31-48 (77)
44 2c7n_A Rabex-5, GEF 1, RAB gua 27.0 21 0.00073 26.2 1.1 23 88-110 18-40 (74)
45 1am7_A Lysozyme; glycosidase, 26.8 37 0.0013 27.2 2.6 17 117-133 136-152 (158)
46 4a8e_A XER A, probable tyrosin 26.3 1.2E+02 0.0041 22.8 5.2 51 46-131 34-84 (292)
47 2dkz_A Hypothetical protein LO 25.6 37 0.0013 25.4 2.2 21 60-80 10-30 (84)
48 2e1f_A Werner syndrome ATP-dep 25.4 60 0.002 23.7 3.3 23 141-163 14-36 (103)
49 4fxe_A Antitoxin RELB; toxin/a 25.1 1.3E+02 0.0044 21.3 4.9 38 119-166 12-49 (79)
50 2kj9_A Integrase; DNA_BRE_C su 24.6 1.1E+02 0.0038 20.7 4.4 49 64-139 51-101 (118)
51 2osa_A N-chimaerin; RHO-GAP, G 24.0 62 0.0021 25.1 3.3 35 118-152 53-94 (202)
52 2lna_A AFG3-like protein 2; st 22.9 63 0.0022 23.5 3.0 27 109-135 60-86 (99)
53 4fdi_A N-acetylgalactosamine-6 22.3 46 0.0016 28.9 2.5 18 115-132 234-251 (502)
54 2a25_A Ubiquitin ligase SIAH1; 21.6 19 0.00064 28.7 -0.1 34 86-126 25-62 (193)
55 3iug_A RHO/CDC42/RAC GTPase-ac 21.4 1.1E+02 0.0039 24.1 4.4 33 118-151 65-105 (229)
56 2gpe_A Bifunctional protein PU 21.0 45 0.0015 20.7 1.6 34 117-152 12-45 (52)
57 2rhf_A DNA helicase RECQ; HRDC 20.7 81 0.0028 21.2 3.0 22 142-163 5-26 (77)
58 1yx4_A 26S proteasome non-ATPa 20.6 44 0.0015 26.8 1.9 31 129-159 31-61 (132)
59 2gso_A Phosphodiesterase-nucle 20.3 57 0.0019 26.9 2.5 25 109-133 184-208 (393)
60 1v5r_A Growth-arrest-specific 20.1 14 0.00048 28.3 -1.1 13 49-61 64-76 (97)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=92.60 E-value=0.75 Score=35.22 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 028699 44 QKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 123 (205)
Q Consensus 44 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL 123 (205)
.-+++|+.|..|+.... +.+...+..||.+|+.++-..| .+..++...+..|
T Consensus 25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l 76 (324)
T 1xo0_A 25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL 76 (324)
T ss_dssp HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence 44578899999998763 3466778999999999875322 3557899999999
Q ss_pred HHHHHHhCCC-CCCCcchh
Q 028699 124 RAAYEEHGGR-PEANPFGA 141 (205)
Q Consensus 124 RAafEE~Gg~-pE~NPF~a 141 (205)
++.|+-.+.. +..||+..
T Consensus 77 ~~~~~~~~~~~~~~np~~~ 95 (324)
T 1xo0_A 77 NMLHRRSGLPRPSDSNAVS 95 (324)
T ss_dssp HHHHHHHTSCCGGGSHHHH
T ss_pred HHHHHHcCCCCCCcCHHHH
Confidence 9999987643 34688754
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=84.33 E-value=3.3 Score=28.61 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 028699 46 RRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 125 (205)
Q Consensus 46 RrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA 125 (205)
+++++.|..||.... -..+...+..||.+|+.|+-..| .+..|+-..+.-||+
T Consensus 33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr~ 85 (117)
T 3nrw_A 33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 567888888887632 12566778889999998874311 245677788888888
Q ss_pred HHHHh--CCCCCCCcch
Q 028699 126 AYEEH--GGRPEANPFG 140 (205)
Q Consensus 126 afEE~--Gg~pE~NPF~ 140 (205)
.|.-. -|--+.||+.
T Consensus 86 f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 86 WLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHcCCcccCHHH
Confidence 87643 2445678874
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=81.41 E-value=4.4 Score=30.49 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=47.9
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 028699 44 QKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 123 (205)
Q Consensus 44 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL 123 (205)
.-++.++.|..|+... .+.+..-+..||.+|+.++-.. ..+..++...+.-|
T Consensus 26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l 77 (290)
T 1a0p_A 26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV 77 (290)
T ss_dssp HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence 3456788899999887 3467788899999999876421 12456788889999
Q ss_pred HHHHHHh--CCCCCCCcch
Q 028699 124 RAAYEEH--GGRPEANPFG 140 (205)
Q Consensus 124 RAafEE~--Gg~pE~NPF~ 140 (205)
+++|+.. -+.-+.|||.
T Consensus 78 ~~~~~~~~~~~~i~~np~~ 96 (290)
T 1a0p_A 78 RRLFQYLYREKFREDDPSA 96 (290)
T ss_dssp HHHHHHHHHTTSSSSCTTS
T ss_pred HHHHHHHHhCCCccCChhh
Confidence 9998854 2345678985
No 4
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=77.78 E-value=1.8 Score=41.62 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCcc-hhhHHHHHHH----HHHHHHHhh
Q 028699 120 IGRLRAAYEEHGGRP-------------------------EANPF-GARAVRIFLR----EVRDFQAKA 158 (205)
Q Consensus 120 IGRLRAafEE~Gg~p-------------------------E~NPF-~araVRlYLR----eVRd~QAkA 158 (205)
..-++.+++.++++| |.||| |.|.+|+||. |+=+.|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677788877764 78998 8999999998 565666554
No 5
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=73.93 E-value=3.5 Score=40.49 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.4
Q ss_pred CCCcc-hhhHHHHHHH--HHHHHHHhh
Q 028699 135 EANPF-GARAVRIFLR--EVRDFQAKA 158 (205)
Q Consensus 135 E~NPF-~araVRlYLR--eVRd~QAkA 158 (205)
|.||| |.|++|+||. |+=++|.+|
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rA 709 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHH
Confidence 67999 9999999998 777777765
No 6
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=70.36 E-value=7.7 Score=25.40 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 028699 48 DWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY 127 (205)
Q Consensus 48 dWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAaf 127 (205)
.++.|..|+.+ +.|..-+..||.+|+.++.+ +.+..++..+++.||++|
T Consensus 31 ~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~~ 79 (110)
T 2khq_A 31 AYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNAF 79 (110)
T ss_dssp HHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHHH
Confidence 34446666643 45677789999999987731 124468889999999999
Q ss_pred HHh--CCCCCCCcch
Q 028699 128 EEH--GGRPEANPFG 140 (205)
Q Consensus 128 EE~--Gg~pE~NPF~ 140 (205)
+-. -|--+.||+.
T Consensus 80 ~~a~~~~~i~~NP~~ 94 (110)
T 2khq_A 80 DDAIHEGYVIKNPTY 94 (110)
T ss_dssp HHHHHTTCCCCCGGG
T ss_pred HHHHHCCCcccCccc
Confidence 742 1334689984
No 7
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=67.96 E-value=13 Score=24.52 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=37.5
Q ss_pred CCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCc
Q 028699 61 PPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEH--GGRPEANP 138 (205)
Q Consensus 61 PPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE~--Gg~pE~NP 138 (205)
.-+.|..-+..||.+|+.++-..| .+..++..+++.||++|+-. -|--+.||
T Consensus 46 g~~~l~~It~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP 99 (117)
T 2kkp_A 46 GSIPLKKLQPADIQRLYASKLESG--------------------------LSPTRVRYIHVVLHEAMSQARESGLLLQNP 99 (117)
T ss_dssp CTSCTTTCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHHHHHHHHTTTSCSSCG
T ss_pred CceEHHHCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHCCCcccCc
Confidence 345677788899999998764211 24568888999999999743 12345799
Q ss_pred ch
Q 028699 139 FG 140 (205)
Q Consensus 139 F~ 140 (205)
+.
T Consensus 100 ~~ 101 (117)
T 2kkp_A 100 TE 101 (117)
T ss_dssp GG
T ss_pred cc
Confidence 84
No 8
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=67.64 E-value=2.4 Score=31.69 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 028699 115 SLDALIGRLRAAYEEHGGRPE 135 (205)
Q Consensus 115 SLDALIGRLRAafEE~Gg~pE 135 (205)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999998876654
No 9
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=66.98 E-value=15 Score=22.91 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 028699 47 RDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAA 126 (205)
Q Consensus 47 rdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAa 126 (205)
..++.|..|+. -+.|..-+..||.+|+.++...| +..++...+..||++
T Consensus 29 ~~~~~~~~~~g----~~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~ 77 (103)
T 2oxo_A 29 SKIKAIRRGLP----DAPLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDA 77 (103)
T ss_dssp HHHHHHHHHSC----SCBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC----cCchhhCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHH
Confidence 34445555554 34567778999999998774211 246788899999999
Q ss_pred HHH---hCCCCCCCcch
Q 028699 127 YEE---HGGRPEANPFG 140 (205)
Q Consensus 127 fEE---~Gg~pE~NPF~ 140 (205)
|+- .|. -+.||+.
T Consensus 78 ~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 78 FREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHTTS-CSSCTTC
T ss_pred HHHHHHcCC-CCCChHh
Confidence 874 343 4679985
No 10
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=65.30 E-value=5.1 Score=39.48 Aligned_cols=25 Identities=40% Similarity=0.683 Sum_probs=21.8
Q ss_pred CCCCcc-hhhHHHHHHH--HHHHHHHhh
Q 028699 134 PEANPF-GARAVRIFLR--EVRDFQAKA 158 (205)
Q Consensus 134 pE~NPF-~araVRlYLR--eVRd~QAkA 158 (205)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 689 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARA 689 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHH
Confidence 589999 8999999998 788888776
No 11
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=64.58 E-value=3.3 Score=28.63 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 028699 114 GSLDALIGRLRAAYEEHGGRP 134 (205)
Q Consensus 114 GSLDALIGRLRAafEE~Gg~p 134 (205)
.+||.+|.|||..+++.++.+
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998876543
No 12
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=62.53 E-value=11 Score=32.55 Aligned_cols=34 Identities=41% Similarity=0.766 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------CCCcc-hhhHHHHHHHH
Q 028699 117 DALIGRLRAAYEEHGGRP---------------------EANPF-GARAVRIFLRE 150 (205)
Q Consensus 117 DALIGRLRAafEE~Gg~p---------------------E~NPF-~araVRlYLRe 150 (205)
+...--++.+++.++++| |.||| |.|+||+||..
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~ 117 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDR 117 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccc
Confidence 444456777777766652 67998 99999999983
No 13
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=61.99 E-value=3.6 Score=29.58 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 028699 114 GSLDALIGRLRAAYEEHGGRP 134 (205)
Q Consensus 114 GSLDALIGRLRAafEE~Gg~p 134 (205)
.+||.+|.|||..+++.++.+
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~~ 95 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSHP 95 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998776543
No 14
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=60.36 E-value=4.9 Score=26.66 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=36.6
Q ss_pred CCCCCCcchhHhHHHhhhcc-cCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 028699 63 LSLPMCSGAHVLEFLRYLDQ-FGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE---HGGRPEANP 138 (205)
Q Consensus 63 lsL~~csg~hVleFLrylDq-fGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~pE~NP 138 (205)
+.|...+..+|.+|+.||-. .| .+-.|+...+.-||++|+- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35677788999999988753 22 2346888899999999874 344 45688
Q ss_pred ch
Q 028699 139 FG 140 (205)
Q Consensus 139 F~ 140 (205)
|.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 15
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=59.86 E-value=6.3 Score=27.09 Aligned_cols=26 Identities=31% Similarity=0.761 Sum_probs=21.5
Q ss_pred cccCcccccCCCCCCCCCCCCCCCCC
Q 028699 81 DQFGKTKVHNQNCPFFGLPNPPAPCP 106 (205)
Q Consensus 81 DqfGKTkVH~~~C~ffG~p~ppapC~ 106 (205)
|+.|-.|--..+|+|||-|.-..=|.
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 67788888999999999988766553
No 16
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=59.59 E-value=11 Score=35.31 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-hhhHHHHHHH--HHHHHHHh
Q 028699 116 LDALIGRLRAAYEEHGGR---------------------PEANPF-GARAVRIFLR--EVRDFQAK 157 (205)
Q Consensus 116 LDALIGRLRAafEE~Gg~---------------------pE~NPF-~araVRlYLR--eVRd~QAk 157 (205)
.+...--++.+++.++|+ .|.||| |.|+||+||. ++=+.|.+
T Consensus 312 ~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~Qlr 377 (572)
T 2wqd_A 312 EEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLR 377 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHH
Confidence 455666677777877665 378998 8999999995 44444443
No 17
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=58.83 E-value=2.5 Score=32.00 Aligned_cols=15 Identities=47% Similarity=0.893 Sum_probs=9.8
Q ss_pred HHHhhhCcchhhhhc
Q 028699 154 FQAKARGVSYDKKRK 168 (205)
Q Consensus 154 ~QAkARgi~y~kk~~ 168 (205)
+.-|.-||+|-+|||
T Consensus 38 Fl~KGLGIsYgRkkR 52 (86)
T 3mi9_C 38 FITKALGISYGRKKR 52 (86)
T ss_dssp HHHTTSCCCSCC---
T ss_pred hcccCCccccccccc
Confidence 356899999986654
No 18
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=57.80 E-value=7.1 Score=38.47 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=21.8
Q ss_pred CCCCcc-hhhHHHHHHH--HHHHHHHhh
Q 028699 134 PEANPF-GARAVRIFLR--EVRDFQAKA 158 (205)
Q Consensus 134 pE~NPF-~araVRlYLR--eVRd~QAkA 158 (205)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 682 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRA 682 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHH
Confidence 589999 8999999998 888888776
No 19
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=57.78 E-value=14 Score=27.67 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 028699 46 RRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 125 (205)
Q Consensus 46 RrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA 125 (205)
++.++.|..||.+. .|..-+..||.+|+.++-..| +..++...+.-|++
T Consensus 28 ~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~ 76 (283)
T 1z19_A 28 MSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSD 76 (283)
T ss_dssp HHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHHH
Confidence 45667788887653 566778999999998875321 23578888999999
Q ss_pred HHHHhC--CCCCCCcch
Q 028699 126 AYEEHG--GRPEANPFG 140 (205)
Q Consensus 126 afEE~G--g~pE~NPF~ 140 (205)
+|+..- |.-+.|||.
T Consensus 77 ~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 77 AFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHCCCCCcCchh
Confidence 988531 334588874
No 20
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=56.37 E-value=38 Score=22.08 Aligned_cols=51 Identities=8% Similarity=0.086 Sum_probs=36.4
Q ss_pred CCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCcch
Q 028699 63 LSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEH--GGRPEANPFG 140 (205)
Q Consensus 63 lsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE~--Gg~pE~NPF~ 140 (205)
+.|..-+..||.+|+.++.+ +.+..++..++..||++|.-. -|--+.||+.
T Consensus 39 ~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A~~~~~i~~nP~~ 91 (111)
T 2kiw_A 39 KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSE 91 (111)
T ss_dssp SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHHHHTTSCSCCTTT
T ss_pred CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHHHHhCChhhCccc
Confidence 45677789999999987741 124468888999999998742 1334689984
No 21
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=54.64 E-value=46 Score=22.37 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=36.1
Q ss_pred CCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCcch
Q 028699 63 LSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEH--GGRPEANPFG 140 (205)
Q Consensus 63 lsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE~--Gg~pE~NPF~ 140 (205)
+.|..-+..||.+|+..+...| +..++..++.-||++|+-. -|--+.||+.
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 97 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIVTGRAKYNPAP 97 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCCSHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCcHH
Confidence 4567778899999988653211 3457888999999998742 2334689974
No 22
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=52.53 E-value=6.9 Score=26.66 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHhC
Q 028699 114 GSLDALIGRLRAAYEEHG 131 (205)
Q Consensus 114 GSLDALIGRLRAafEE~G 131 (205)
.+||.+|.|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998776
No 23
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=52.30 E-value=23 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=36.9
Q ss_pred CCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 028699 62 PLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE---HGGRPEANP 138 (205)
Q Consensus 62 PlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~pE~NP 138 (205)
-+.|...+..||.+|+.++-..| .+..++..++..||++|+- .|. -+.||
T Consensus 45 ~~~l~~it~~~i~~~~~~l~~~g--------------------------~s~~t~~~~~~~l~~~~~~a~~~~~-i~~nP 97 (118)
T 2kd1_A 45 NIKLAKLTSLHMQNYVNSLRDEG--------------------------LKRGTIEKIIKVIRNSLEHAIDLEL-ITKNV 97 (118)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHHT--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CSSCT
T ss_pred cCCHHhCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 35677788999999998764311 2456888899999999874 343 45789
Q ss_pred ch
Q 028699 139 FG 140 (205)
Q Consensus 139 F~ 140 (205)
+.
T Consensus 98 ~~ 99 (118)
T 2kd1_A 98 AA 99 (118)
T ss_dssp TT
T ss_pred cc
Confidence 73
No 24
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=52.20 E-value=13 Score=34.87 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-hhhHHHHHHH
Q 028699 116 LDALIGRLRAAYEEHGGR---------------------PEANPF-GARAVRIFLR 149 (205)
Q Consensus 116 LDALIGRLRAafEE~Gg~---------------------pE~NPF-~araVRlYLR 149 (205)
.+...--++.+++.++|+ .|.||| |.|+||++|.
T Consensus 310 ~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~ 365 (575)
T 2hwg_A 310 EEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMD 365 (575)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeeccc
Confidence 455666777888877765 378998 9999999997
No 25
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=51.37 E-value=52 Score=22.02 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=35.9
Q ss_pred CCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCC
Q 028699 61 PPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE---HGGRPEAN 137 (205)
Q Consensus 61 PPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~pE~N 137 (205)
.-+.|..-+..||.+||..+...| +..++..++.-||++|+- .|. -+.|
T Consensus 44 g~~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~A~~~~~-i~~N 95 (121)
T 2kkv_A 44 GSSDIRQLKTSHLLAPIKEVDTSG---------------------------KHDVAQRLQQRVTAIMRYAVQNDY-IDSN 95 (121)
T ss_dssp TTSCTTCCCSGGGHHHHHHHHHTT---------------------------THHHHHHHHHHHHHHHHHHHHTTS-SCSC
T ss_pred cCCCHHHcCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCC-cccC
Confidence 345677778889999987653211 345788889999999874 343 4689
Q ss_pred cch
Q 028699 138 PFG 140 (205)
Q Consensus 138 PF~ 140 (205)
|+.
T Consensus 96 P~~ 98 (121)
T 2kkv_A 96 PAS 98 (121)
T ss_dssp SCS
T ss_pred cHH
Confidence 974
No 26
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=51.14 E-value=3.2 Score=36.02 Aligned_cols=6 Identities=33% Similarity=0.883 Sum_probs=0.0
Q ss_pred hhhCcch
Q 028699 157 KARGVSY 163 (205)
Q Consensus 157 kARgi~y 163 (205)
| -||+|
T Consensus 327 ~-~~~~~ 332 (358)
T 2pk2_A 327 S-LGIDY 332 (358)
T ss_dssp -------
T ss_pred c-cceee
Confidence 6 99999
No 27
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=44.43 E-value=17 Score=26.26 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 028699 113 WGSLDALIGRLRAAYEEHGGR 133 (205)
Q Consensus 113 WGSLDALIGRLRAafEE~Gg~ 133 (205)
-.+||.+|.|||..+++.|..
T Consensus 79 ~~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 79 NKSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHhhcCCCC
Confidence 358999999999999987754
No 28
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=42.82 E-value=3.3 Score=31.31 Aligned_cols=15 Identities=40% Similarity=0.800 Sum_probs=11.1
Q ss_pred HHhhhCcchhhhhcC
Q 028699 155 QAKARGVSYDKKRKR 169 (205)
Q Consensus 155 QAkARgi~y~kk~~~ 169 (205)
+-|.-||+|-+||||
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 457889999876543
No 29
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=42.00 E-value=12 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028699 114 GSLDALIGRLRAAYEEHGGR 133 (205)
Q Consensus 114 GSLDALIGRLRAafEE~Gg~ 133 (205)
.+||.+|.|||..+++.++.
T Consensus 68 ~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 68 NVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp THHHHHHHHHHHHTTTTSCC
T ss_pred chHHHHHHHHHHHhccccCC
Confidence 58999999999999877443
No 30
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=41.25 E-value=21 Score=35.54 Aligned_cols=37 Identities=30% Similarity=0.497 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCcc-hhhHHHHHHH--HHHHHHHhh
Q 028699 115 SLDALIGRLRAAYEEHGGRPEANPF-GARAVRIFLR--EVRDFQAKA 158 (205)
Q Consensus 115 SLDALIGRLRAafEE~Gg~pE~NPF-~araVRlYLR--eVRd~QAkA 158 (205)
+.|.++.++.. .-|.||| |.|++|++|. |+=++|.+|
T Consensus 670 ~~dk~~~~~~~-------~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 670 PAEKVRNRVNA-------LHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CHHHHHHHHHS-------SCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CHHHHHhhhcC-------CCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 46777666542 3689999 9999999986 566666665
No 31
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.19 E-value=5.6 Score=33.85 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHhhhCcchhhh
Q 028699 125 AAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKK 166 (205)
Q Consensus 125 AafEE~Gg~pE~NPF~araVRlYLReVRd~QAkARgi~y~kk 166 (205)
..|-|.|..|+..|=-|-|+|+=|.|-|.-|.+.+.-.-++.
T Consensus 213 ~~~~~~~~dp~~dpela~alr~s~eee~~rq~~~~~~~~~~~ 254 (268)
T 4b4t_W 213 GTFMDFGVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQD 254 (268)
T ss_dssp ------------------------------------------
T ss_pred CcccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHhhcccccc
Confidence 345678899999999999999999999988877765544443
No 32
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=40.55 E-value=11 Score=26.30 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028699 114 GSLDALIGRLRAAYEEHGGR 133 (205)
Q Consensus 114 GSLDALIGRLRAafEE~Gg~ 133 (205)
.+||.+|.|||..+++.|..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 47999999999999877644
No 33
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=38.70 E-value=16 Score=25.35 Aligned_cols=19 Identities=42% Similarity=0.536 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 028699 114 GSLDALIGRLRAAYEEHGG 132 (205)
Q Consensus 114 GSLDALIGRLRAafEE~Gg 132 (205)
.+||.+|.|||..+++.|.
T Consensus 70 ~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 70 RTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp HHHHHHHHHHHHHHGGGTG
T ss_pred ccHHHHHHHHHHHhcccCC
Confidence 5899999999999987753
No 34
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=37.31 E-value=67 Score=21.02 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=33.1
Q ss_pred CCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCcc
Q 028699 63 LSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE---HGGRPEANPF 139 (205)
Q Consensus 63 lsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~pE~NPF 139 (205)
+.|..-+..||.+|+.++-.. .+..++..+++.||++|+- .| --+.||+
T Consensus 46 ~~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~-~i~~NP~ 97 (116)
T 2kj5_A 46 LKVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRH-IIEYNPA 97 (116)
T ss_dssp SBSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTT-SCSSCGG
T ss_pred CcHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcC-ccccCch
Confidence 345666778888888765321 1345788888888888863 34 3467887
Q ss_pred h
Q 028699 140 G 140 (205)
Q Consensus 140 ~ 140 (205)
.
T Consensus 98 ~ 98 (116)
T 2kj5_A 98 A 98 (116)
T ss_dssp G
T ss_pred h
Confidence 3
No 35
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.07 E-value=15 Score=25.99 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 028699 116 LDALIGRLRAAYEEHGGRPEAN 137 (205)
Q Consensus 116 LDALIGRLRAafEE~Gg~pE~N 137 (205)
-|-=|+||++.+.+||.-+|-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999887754
No 36
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=34.68 E-value=27 Score=23.43 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=17.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCCc
Q 028699 113 WGSLDALIGRLRAAYEEHGGRPEANP 138 (205)
Q Consensus 113 WGSLDALIGRLRAafEE~Gg~pE~NP 138 (205)
-|.=..||-||.++.++.|+.++..|
T Consensus 25 ~G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 25 GGLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp CSSHHHHHHHHHHHHHHSCC------
T ss_pred CCcHHHHHHHHHHHHHhccCCcccCC
Confidence 36667999999999999998877655
No 37
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=34.08 E-value=17 Score=26.38 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028699 114 GSLDALIGRLRAAYEEHGGR 133 (205)
Q Consensus 114 GSLDALIGRLRAafEE~Gg~ 133 (205)
.+||.+|-|||..+++.|..
T Consensus 82 ~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred cHHHHHHHHHHHHHhhcCCC
Confidence 58999999999999876643
No 38
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=33.17 E-value=54 Score=21.02 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=20.9
Q ss_pred hcchhHHHHHHHHHHHHHh--CCCCCCCcch
Q 028699 112 AWGSLDALIGRLRAAYEEH--GGRPEANPFG 140 (205)
Q Consensus 112 AWGSLDALIGRLRAafEE~--Gg~pE~NPF~ 140 (205)
+..++..++..||++|+-. -|--+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4468888999999998742 2335689984
No 39
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=32.89 E-value=1e+02 Score=20.19 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=35.6
Q ss_pred CCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCC
Q 028699 60 RPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE---HGGRPEA 136 (205)
Q Consensus 60 rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~pE~ 136 (205)
..-+.|..-+..||.+|+..+-..| + .++..+.+.|+++|+. .|. -+.
T Consensus 39 ~G~~~l~~It~~~i~~~~~~l~~~~---------------------------~-~t~~~~~~~l~~i~~~Av~~~~-i~~ 89 (106)
T 2khv_A 39 IGPLSVQDVDTKLIMKVLDPIWEQK---------------------------P-ETASRLRGRIESVLDWATVRGY-REG 89 (106)
T ss_dssp HTTSBSSSCCHHHHHHHHHHHHHHC---------------------------H-HHHHHHHHHHHHHHHHHHHHTS-SCS
T ss_pred cCCccHHHcCHHHHHHHHHHHHHhC---------------------------h-HHHHHHHHHHHHHHHHHHHcCC-cCC
Confidence 3456677888999999987432111 2 5788889999999874 354 356
Q ss_pred -Ccch
Q 028699 137 -NPFG 140 (205)
Q Consensus 137 -NPF~ 140 (205)
||+.
T Consensus 90 ~NP~~ 94 (106)
T 2khv_A 90 DNPAR 94 (106)
T ss_dssp CCTTS
T ss_pred CCchH
Confidence 9973
No 40
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=32.10 E-value=23 Score=25.16 Aligned_cols=24 Identities=21% Similarity=0.557 Sum_probs=18.4
Q ss_pred ccccCCCCCCCCCCCCCCCCCCch
Q 028699 86 TKVHNQNCPFFGLPNPPAPCPCPL 109 (205)
Q Consensus 86 TkVH~~~C~ffG~p~ppapC~CPl 109 (205)
..+=..+|.|||.|..-..|.-=+
T Consensus 13 ~~lC~ngCGFfGnpaT~nlCSkCy 36 (62)
T 2kzy_A 13 PMLCSTGCGFYGNPRTNGMCSVCY 36 (62)
T ss_dssp CCBCTTCCSSBCCTTTTSCCHHHH
T ss_pred ccchhhCCCCcCChhhcCcCHHHH
Confidence 345678999999999888886333
No 41
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=32.05 E-value=59 Score=25.53 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 028699 48 DWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY 127 (205)
Q Consensus 48 dWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAaf 127 (205)
.++.|..||. -+.|..-+..||.+|+.++-..| +..++...+..|+++|
T Consensus 103 ~~~~~~~~~g----~~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~ 151 (356)
T 1z1b_A 103 KIKAIRRGLP----DAPLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAF 151 (356)
T ss_dssp HHHHHHHHSC----SCBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHH
Confidence 3444555543 34566677888999888764321 2357788889999998
Q ss_pred HHh--CCCCCCCcch
Q 028699 128 EEH--GGRPEANPFG 140 (205)
Q Consensus 128 EE~--Gg~pE~NPF~ 140 (205)
+-. -|.-+.||+.
T Consensus 152 ~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 152 REAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHTTSCSSCTTT
T ss_pred HHHHHcCCcccChHh
Confidence 743 1334578874
No 42
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=31.63 E-value=32 Score=25.55 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 028699 114 GSLDALIGRLRAAYEEHGGR 133 (205)
Q Consensus 114 GSLDALIGRLRAafEE~Gg~ 133 (205)
.+||.+|.|||..+++.|..
T Consensus 99 ~~l~~~I~rLRkkL~~~~~~ 118 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDGY 118 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 47999999999999988753
No 43
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=29.53 E-value=63 Score=23.46 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 028699 141 ARAVRIFLREVRDFQAKA 158 (205)
Q Consensus 141 araVRlYLReVRd~QAkA 158 (205)
-++|+.|++++.+.|++.
T Consensus 31 ~~nv~~yy~~~~~~~~~~ 48 (77)
T 3cw1_L 31 KENVKDYYCKWMEEQAQS 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999998864
No 44
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=27.02 E-value=21 Score=26.21 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=18.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCchh
Q 028699 88 VHNQNCPFFGLPNPPAPCPCPLR 110 (205)
Q Consensus 88 VH~~~C~ffG~p~ppapC~CPlR 110 (205)
+=..+|.|||.|..-..|.-=+|
T Consensus 18 lC~ngCGFfGnpaT~nlCSkCyr 40 (74)
T 2c7n_A 18 LCKKGCGYYGNPAWQGFCSKCWR 40 (74)
T ss_dssp CCTTCSSSCCCGGGTTCCHHHHH
T ss_pred hHHhCCCCCCChhhcCccHHHHH
Confidence 44569999999999898875444
No 45
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=26.81 E-value=37 Score=27.24 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 028699 117 DALIGRLRAAYEEHGGR 133 (205)
Q Consensus 117 DALIGRLRAafEE~Gg~ 133 (205)
+--+..|+++|+++||.
T Consensus 136 ~~~~~~l~~~y~~~gg~ 152 (158)
T 1am7_A 136 EHKADSLIAKFKEAGGT 152 (158)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHcCCc
Confidence 56667999999999974
No 46
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=26.31 E-value=1.2e+02 Score=22.76 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 028699 46 RRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 125 (205)
Q Consensus 46 RrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA 125 (205)
++.|+.|..| +...+..||.+|+.++-..| .+..++...+..|++
T Consensus 34 ~~~l~~~~~~---------~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~ 78 (292)
T 4a8e_A 34 TYYISKFFEE---------GHSPTARDALRFLAKLKRKG--------------------------YSTRSLNLVIQALKA 78 (292)
T ss_dssp HHHHHHHHHH---------TCCSSHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 3455556655 67788999999999876422 234577888888888
Q ss_pred HHHHhC
Q 028699 126 AYEEHG 131 (205)
Q Consensus 126 afEE~G 131 (205)
+|+...
T Consensus 79 ~~~~a~ 84 (292)
T 4a8e_A 79 YFKFEG 84 (292)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888653
No 47
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.64 E-value=37 Score=25.35 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.2
Q ss_pred CCCCCCCCCcchhHhHHHhhh
Q 028699 60 RPPLSLPMCSGAHVLEFLRYL 80 (205)
Q Consensus 60 rPPlsL~~csg~hVleFLryl 80 (205)
.||..|+.=|-.+|.+|||++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~i 30 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFI 30 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGT
T ss_pred CCchhhhhcCHHHHHHHHHHc
Confidence 699999999999999999954
No 48
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=25.41 E-value=60 Score=23.75 Aligned_cols=23 Identities=22% Similarity=0.014 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHhhhCcch
Q 028699 141 ARAVRIFLREVRDFQAKARGVSY 163 (205)
Q Consensus 141 araVRlYLReVRd~QAkARgi~y 163 (205)
..++---|+..|...|+.+||+-
T Consensus 14 d~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 14 QIVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 45677789999999999999874
No 49
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=25.06 E-value=1.3e+02 Score=21.30 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHHhhhCcchhhh
Q 028699 119 LIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKK 166 (205)
Q Consensus 119 LIGRLRAafEE~Gg~pE~NPF~araVRlYLReVRd~QAkARgi~y~kk 166 (205)
|=-+--++|++.|-.+ +-|||+||+.|= +.+|||++-+
T Consensus 12 lK~~a~~v~~~lGl~~------s~Ai~~fl~~v~----~~~~iPF~~~ 49 (79)
T 4fxe_A 12 LKARSYAALEKMGVTP------SEALRLMLEYIA----DNERLPFKQT 49 (79)
T ss_dssp HHHHHHHHHHHHTCCH------HHHHHHHHHHHH----HHSSCSSCCH
T ss_pred HHHHHHHHHHHhCCCH------HHHHHHHHHHHH----HhCCCCCccc
Confidence 3345567889999874 679999999874 4589998754
No 50
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=24.63 E-value=1.1e+02 Score=20.74 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=31.1
Q ss_pred CCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCcc
Q 028699 64 SLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEH--GGRPEANPF 139 (205)
Q Consensus 64 sL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE~--Gg~pE~NPF 139 (205)
.|..-+..||.+||..+-..| +..++..+++.|+++|+-. -|--+.||+
T Consensus 51 ~l~~It~~~i~~~l~~l~~~~---------------------------~~~t~~~~~~~L~~if~~Av~~g~i~~NP~ 101 (118)
T 2kj9_A 51 DIAELDTGDLLVPIKKIEKLG---------------------------YLEIAMRVKQYATAIMRYAVQQKMIRFNPA 101 (118)
T ss_dssp BGGGCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSSSSCHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCch
Confidence 455667788888876442111 2357788888888888742 233457886
No 51
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=23.95 E-value=62 Score=25.06 Aligned_cols=35 Identities=17% Similarity=0.473 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCCC------CCcc-hhhHHHHHHHHHH
Q 028699 118 ALIGRLRAAYEEHGGRPE------ANPF-GARAVRIFLREVR 152 (205)
Q Consensus 118 ALIGRLRAafEE~Gg~pE------~NPF-~araVRlYLReVR 152 (205)
+-|-.||..|++.|...+ .++. .|.+++.||||.-
T Consensus 53 ~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLp 94 (202)
T 2osa_A 53 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLP 94 (202)
T ss_dssp HHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCC
Confidence 457889999998764322 2332 6899999999863
No 52
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=22.90 E-value=63 Score=23.52 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.5
Q ss_pred hhhhcchhHHHHHHHHHHHHHhCCCCC
Q 028699 109 LRQAWGSLDALIGRLRAAYEEHGGRPE 135 (205)
Q Consensus 109 lRQAWGSLDALIGRLRAafEE~Gg~pE 135 (205)
..-.-||+|.+--+|++|=+|+|..++
T Consensus 60 ~~f~IGSvd~FE~~Le~aQ~el~i~~~ 86 (99)
T 2lna_A 60 VWFNIGSVDTFERNLETLQQELGIEGE 86 (99)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTCCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHcCCCcc
Confidence 355669999999999999999998876
No 53
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=22.28 E-value=46 Score=28.92 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhCC
Q 028699 115 SLDALIGRLRAAYEEHGG 132 (205)
Q Consensus 115 SLDALIGRLRAafEE~Gg 132 (205)
.+|..||||-.+++|.|-
T Consensus 234 ~~D~~vG~il~~L~~~gl 251 (502)
T 4fdi_A 234 EIDDSIGKILELLQDLHV 251 (502)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 689999999999999764
No 54
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=21.65 E-value=19 Score=28.70 Aligned_cols=34 Identities=35% Similarity=0.625 Sum_probs=17.0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchh----hhcchhHHHHHHHHHH
Q 028699 86 TKVHNQNCPFFGLPNPPAPCPCPLR----QAWGSLDALIGRLRAA 126 (205)
Q Consensus 86 TkVH~~~C~ffG~p~ppapC~CPlR----QAWGSLDALIGRLRAa 126 (205)
-..|...|.| +||.||.. .--|+++.|..-|+..
T Consensus 25 ~~~He~~C~f-------~p~~Cp~~g~~C~~~G~~~~l~~H~~~~ 62 (193)
T 2a25_A 25 KADHEELCEF-------RPYSCPCPGASCKWQGSLDAVMPHLMHQ 62 (193)
T ss_dssp ------------------CEECCCC--CCCCEECSTTHHHHHHHH
T ss_pred ccchhhcCCC-------CCccCCCCCCCCcCCCCHHHHHHHHHHH
Confidence 3469999965 57777764 2238999999999863
No 55
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=21.35 E-value=1.1e+02 Score=24.09 Aligned_cols=33 Identities=24% Similarity=0.601 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCC--CCcc------hhhHHHHHHHHH
Q 028699 118 ALIGRLRAAYEEHGGRPE--ANPF------GARAVRIFLREV 151 (205)
Q Consensus 118 ALIGRLRAafEE~Gg~pE--~NPF------~araVRlYLReV 151 (205)
+-|-+||..|+. |..+. .+++ .+.+++.||||.
T Consensus 65 ~~i~~L~~~~~~-~~~~~~~~~~~~~dvh~va~lLK~fLreL 105 (229)
T 3iug_A 65 SNIQRLRHEFDS-EHVPDLTKEPYVQDIHSVGSLCKLYFREL 105 (229)
T ss_dssp HHHHHHHHHHHT-TCCCCTTSTTTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-CCCCCccccccccchHHHHHHHHHHHHHC
Confidence 457889999986 33332 2222 789999999985
No 56
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=20.99 E-value=45 Score=20.68 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Q 028699 117 DALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVR 152 (205)
Q Consensus 117 DALIGRLRAafEE~Gg~pE~NPF~araVRlYLReVR 152 (205)
|.|+-+|-+.-+..|+. .+=+...||+.||.+..
T Consensus 12 ~~l~~~l~~lA~~~~rs--~s~lir~Ai~~yl~~~e 45 (52)
T 2gpe_A 12 DATRERIKSAATRIDRT--PHWLIKQAIFSYLEQLE 45 (52)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHH
Confidence 67888999999999875 55678889999997654
No 57
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=20.72 E-value=81 Score=21.17 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHhhhCcch
Q 028699 142 RAVRIFLREVRDFQAKARGVSY 163 (205)
Q Consensus 142 raVRlYLReVRd~QAkARgi~y 163 (205)
.++---|++.|+..|+.++|+-
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vpp 26 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYSA 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 4566779999999999999984
No 58
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=20.57 E-value=44 Score=26.76 Aligned_cols=31 Identities=35% Similarity=0.416 Sum_probs=27.9
Q ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHHhhh
Q 028699 129 EHGGRPEANPFGARAVRIFLREVRDFQAKAR 159 (205)
Q Consensus 129 E~Gg~pE~NPF~araVRlYLReVRd~QAkAR 159 (205)
|+|..|+..|=-+-|+|+-|.|.|.-|.++.
T Consensus 31 efgvDp~~DPeLa~ALr~Smeee~~Rqe~~~ 61 (132)
T 1yx4_A 31 EFGVDPSADPELALALRVSMEEQRQRQEEEA 61 (132)
T ss_dssp CSCSCGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHHHHHHhHHHHHHHHHHHH
Confidence 6788999999999999999999999887664
No 59
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=20.30 E-value=57 Score=26.87 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=20.0
Q ss_pred hhhhcchhHHHHHHHHHHHHHhCCC
Q 028699 109 LRQAWGSLDALIGRLRAAYEEHGGR 133 (205)
Q Consensus 109 lRQAWGSLDALIGRLRAafEE~Gg~ 133 (205)
...+--.+|..||||-.++++.|..
T Consensus 184 y~~~i~~~D~~ig~ll~~L~~~g~~ 208 (393)
T 2gso_A 184 YADAVRAVDAAIGRLLAGMQRDGTR 208 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445568999999999999988743
No 60
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=20.07 E-value=14 Score=28.31 Aligned_cols=13 Identities=54% Similarity=1.224 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCC
Q 028699 49 WNTFCQYLRNHRP 61 (205)
Q Consensus 49 Wntf~qyL~n~rP 61 (205)
|.||.+||..|.|
T Consensus 64 W~~L~~yL~khdp 76 (97)
T 1v5r_A 64 WETFAGYLLKHDP 76 (97)
T ss_dssp EEEHHHHHHHHCH
T ss_pred HHHHHHHHHHcCc
Confidence 9999999999988
Done!