Your job contains 1 sequence.
>028700
MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP
VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE
TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL
VVNLPDKISAKSTPPVTDIEDLCIR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 028700
(205 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091161 - symbol:AT3G19630 species:3702 "Arabi... 808 1.8e-80 1
DICTYBASE|DDB_G0288255 - symbol:DDB_G0288255 "putative ri... 384 1.5e-35 1
UNIPROTKB|Q603C0 - symbol:rlmN "Dual-specificity RNA meth... 352 3.7e-32 1
UNIPROTKB|P36979 - symbol:rlmN "23S rRNA m2A2503 methyltr... 350 6.0e-32 1
UNIPROTKB|Q8EC29 - symbol:rlmN "Dual-specificity RNA meth... 336 1.8e-30 1
TIGR_CMR|SO_3315 - symbol:SO_3315 "conserved hypothetical... 336 1.8e-30 1
UNIPROTKB|Q9KTX3 - symbol:rlmN "Dual-specificity RNA meth... 333 3.8e-30 1
TIGR_CMR|VC_0757 - symbol:VC_0757 "conserved hypothetical... 333 3.8e-30 1
UNIPROTKB|Q47WB7 - symbol:rlmN "Dual-specificity RNA meth... 312 6.4e-28 1
TIGR_CMR|CPS_4255 - symbol:CPS_4255 "radical SAM enzyme, ... 312 6.4e-28 1
UNIPROTKB|Q83C77 - symbol:rlmN "Dual-specificity RNA meth... 309 1.3e-27 1
TIGR_CMR|CBU_1252 - symbol:CBU_1252 "radical SAM enzyme, ... 309 1.3e-27 1
TAIR|locus:2043225 - symbol:AT2G39670 species:3702 "Arabi... 309 1.3e-27 1
TIGR_CMR|CJE_1882 - symbol:CJE_1882 "radical SAM enzyme, ... 305 3.5e-27 1
UNIPROTKB|Q81WH4 - symbol:rlmN "Probable dual-specificity... 302 7.3e-27 1
TIGR_CMR|BA_4002 - symbol:BA_4002 "conserved hypothetical... 302 7.3e-27 1
UNIPROTKB|Q74E53 - symbol:rlmN "Dual-specificity RNA meth... 298 1.9e-26 1
TIGR_CMR|GSU_1111 - symbol:GSU_1111 "conserved hypothetic... 298 1.9e-26 1
UNIPROTKB|Q723G9 - symbol:rlmN "Probable dual-specificity... 294 5.2e-26 1
UNIPROTKB|Q3AC22 - symbol:rlmN "Probable dual-specificity... 288 2.2e-25 1
TIGR_CMR|CHY_1480 - symbol:CHY_1480 "radical SAM enzyme, ... 288 2.2e-25 1
TIGR_CMR|SPO_3346 - symbol:SPO_3346 "radical SAM enzyme, ... 285 4.6e-25 1
TAIR|locus:2195608 - symbol:AT1G60230 species:3702 "Arabi... 272 3.0e-23 1
UNIPROTKB|P0A644 - symbol:rlmN "Probable dual-specificity... 262 1.3e-22 1
UNIPROTKB|O83107 - symbol:rlmN "Probable dual-specificity... 256 5.5e-22 1
GENEDB_PFALCIPARUM|PF14_0066 - symbol:PF14_0066 "radical ... 251 1.9e-21 1
UNIPROTKB|Q8IM25 - symbol:PF14_0066 "Radical SAM protein,... 251 1.9e-21 1
>TAIR|locus:2091161 [details] [associations]
symbol:AT3G19630 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM;IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006396 "RNA processing" evidence=RCA] InterPro:IPR004383
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 GO:GO:0005737 EMBL:CP002686 Gene3D:3.20.20.70
GO:GO:0051536 GO:GO:0006364 GO:GO:0008173 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
EMBL:BT003921 EMBL:BT005008 IPI:IPI00533080 RefSeq:NP_188597.1
UniGene:At.38376 ProteinModelPortal:Q84JV6 SMR:Q84JV6 STRING:Q84JV6
PRIDE:Q84JV6 DNASU:821500 EnsemblPlants:AT3G19630.1 GeneID:821500
KEGG:ath:AT3G19630 TAIR:At3g19630 InParanoid:Q84JV6 OMA:IFIEYIM
PhylomeDB:Q84JV6 ProtClustDB:CLSN2684692 ArrayExpress:Q84JV6
Genevestigator:Q84JV6 Uniprot:Q84JV6
Length = 372
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 156/204 (76%), Positives = 178/204 (87%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY A+VEAVR+M PFQ+SPKRIT+STVGIVHAINK H+DLPG++LAVSLHAP
Sbjct: 169 MGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAP 228
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQ++RCQIMPAARAFPL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+
Sbjct: 229 VQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLK 288
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVV+NLIPFNPIGS SQF TSS VS FQKILR +Y IRTT+RK+MGQDISGACGQL
Sbjct: 289 TFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQL 348
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VVN PD T + DIEDL +
Sbjct: 349 VVNQPDIKKTPGTVELRDIEDLLL 372
>DICTYBASE|DDB_G0288255 [details] [associations]
symbol:DDB_G0288255 "putative ribosomal RNA large
subunit methyltransferase N" species:44689 "Dictyostelium
discoideum" [GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
dictyBase:DDB_G0288255 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AAFI02000109 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 eggNOG:COG0820 TIGRFAMs:TIGR00048 OMA:EMVFIPD
RefSeq:XP_636811.1 ProteinModelPortal:Q54J76 STRING:Q54J76
EnsemblProtists:DDB0304824 GeneID:8626528 KEGG:ddi:DDB_G0288255
InParanoid:Q54J76 Uniprot:Q54J76
Length = 407
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 84/201 (41%), Positives = 127/201 (63%)
Query: 2 GEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
GEP NY + +A++I+T P + +ITVST G+V I++ SD PG+ LA+SLH+
Sbjct: 211 GEPFYNYRNVSKAIKIITD-PNGLAIGKSKITVSTSGVVPLIDRLGSDFPGIGLAISLHS 269
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R +I+PA R +P+ +L+ A ++ KN +++I IEY+ML GVND EQ A+ L KL
Sbjct: 270 ANDKTRSEIVPANRQWPISELVEACIKFSKNCKERITIEYVMLKGVNDSEQDAYDLVKLS 329
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
++F VNLIPFNP SQ+++SS + +S F KIL I+ T+R+ G+DI ACGQ
Sbjct: 330 KSFPSFVNLIPFNPWPG-SQYKSSSKETISQFSKILDDK-GIKVTIRQPRGRDILAACGQ 387
Query: 180 LVVNLPDKISAKSTPPVTDIE 200
L +I+ K P+ +++
Sbjct: 388 LNTESIKEIN-KPIQPLENLD 407
>UNIPROTKB|Q603C0 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 EMBL:AE017282
GenomeReviews:AE017282_GR GO:GO:0001510 eggNOG:COG0820 KO:K06941
OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_115280.1 ProteinModelPortal:Q603C0 GeneID:3104120
KEGG:mca:MCA2887 PATRIC:22609656 Uniprot:Q603C0
Length = 366
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 77/189 (40%), Positives = 120/189 (63%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A R+M + +S +R+T+ST GIV A+++ +++ ++LAVSLHA
Sbjct: 170 MGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVSLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L +L
Sbjct: 229 PDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRL 288
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP + S +R S + ++ F + L+ + + TT RK G+DI ACG
Sbjct: 289 LSHVPSKVNLIPFNPFPN-SAYRCSHPETIARFAQTLQDA-GLITTTRKTRGRDIDAACG 346
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 347 QLVGKVNDR 355
>UNIPROTKB|P36979 [details] [associations]
symbol:rlmN "23S rRNA m2A2503 methyltransferase and tRNA
m2A37 methyltransferase" species:83333 "Escherichia coli K-12"
[GO:0000049 "tRNA binding" evidence=IDA] [GO:0002935 "tRNA
(adenine-C2-)-methyltransferase activity" evidence=IMP;IDA]
[GO:0030488 "tRNA methylation" evidence=IMP;IDA] [GO:0070475 "rRNA
base methylation" evidence=IMP] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0070040 "rRNA (adenine-C2-)-methyltransferase activity"
evidence=IEA;IMP;IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;IDA] [GO:0046872 "metal ion binding"
evidence=IEA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0046677 GO:GO:0051539
GO:GO:0000049 GO:GO:0070475 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
EMBL:U02965 PIR:D65028 RefSeq:NP_417012.1 RefSeq:YP_490745.1
PDB:3RF9 PDB:3RFA PDBsum:3RF9 PDBsum:3RFA ProteinModelPortal:P36979
SMR:P36979 DIP:DIP-12035N IntAct:P36979 MINT:MINT-1220055
PaxDb:P36979 PRIDE:P36979 EnsemblBacteria:EBESCT00000004286
EnsemblBacteria:EBESCT00000016514 GeneID:12932308 GeneID:946249
KEGG:ecj:Y75_p2470 KEGG:eco:b2517 PATRIC:32120427 EchoBASE:EB2301
EcoGene:EG12401 OMA:IYHFGVS BioCyc:EcoCyc:EG12401-MONOMER
BioCyc:ECOL316407:JW2501-MONOMER BioCyc:MetaCyc:EG12401-MONOMER
Genevestigator:P36979 GO:GO:0002935 Uniprot:P36979
Length = 384
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 79/191 (41%), Positives = 117/191 (61%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>UNIPROTKB|Q8EC29 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 72/191 (37%), Positives = 117/191 (61%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y + N+ + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 QLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>TIGR_CMR|SO_3315 [details] [associations]
symbol:SO_3315 "conserved hypothetical protein TIGR00048"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 ProtClustDB:PRK11194
OMA:IYHFGVS RefSeq:NP_718869.1 ProteinModelPortal:Q8EC29
GeneID:1171000 KEGG:son:SO_3315 PATRIC:23526306 Uniprot:Q8EC29
Length = 373
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 72/191 (37%), Positives = 117/191 (61%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y + N+ + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 QLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>UNIPROTKB|Q9KTX3 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 75/191 (39%), Positives = 113/191 (59%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + ++ Y N+ + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>TIGR_CMR|VC_0757 [details] [associations]
symbol:VC_0757 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 ProtClustDB:PRK11194 PIR:D82283
RefSeq:NP_230406.1 ProteinModelPortal:Q9KTX3 DNASU:2615300
GeneID:2615300 KEGG:vch:VC0757 PATRIC:20080625 Uniprot:Q9KTX3
Length = 373
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 75/191 (39%), Positives = 113/191 (59%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + ++ Y N+ + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>UNIPROTKB|Q47WB7 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 KO:K06941 OMA:MACDFCA GO:GO:0070040
TIGRFAMs:TIGR00048 RefSeq:YP_270905.1 ProteinModelPortal:Q47WB7
STRING:Q47WB7 GeneID:3518965 KEGG:cps:CPS_4255 PATRIC:21471375
HOGENOM:HOG000217992 ProtClustDB:PRK11194
BioCyc:CPSY167879:GI48-4265-MONOMER Uniprot:Q47WB7
Length = 386
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 71/190 (37%), Positives = 111/190 (58%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ M L + +S +R+TVST G+V A++ + + LA+S+HA
Sbjct: 169 MGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKID-CALAISIHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +PLE + A Y + S+ ++ IEY+MLD VND AH+L
Sbjct: 228 PNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAH 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S + SS+ ++ F K+L+ SY + R+ G+DI AC
Sbjct: 288 ALKGLPSKINLIPFNPYPG-SPYSRSSNSRIDRFDKVLQ-SYGLTVITRRTRGEDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQL ++ D+
Sbjct: 346 GQLAGDVFDR 355
>TIGR_CMR|CPS_4255 [details] [associations]
symbol:CPS_4255 "radical SAM enzyme, Cfr family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_270905.1
ProteinModelPortal:Q47WB7 STRING:Q47WB7 GeneID:3518965
KEGG:cps:CPS_4255 PATRIC:21471375 HOGENOM:HOG000217992
ProtClustDB:PRK11194 BioCyc:CPSY167879:GI48-4265-MONOMER
Uniprot:Q47WB7
Length = 386
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 71/190 (37%), Positives = 111/190 (58%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ M L + +S +R+TVST G+V A++ + + LA+S+HA
Sbjct: 169 MGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKAKID-CALAISIHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +PLE + A Y + S+ ++ IEY+MLD VND AH+L
Sbjct: 228 PNNKLRDELVPINKKYPLEDFIAAAGRYIEGSKANKQATIEYVMLDHVNDSTDQAHELAH 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S + SS+ ++ F K+L+ SY + R+ G+DI AC
Sbjct: 288 ALKGLPSKINLIPFNPYPG-SPYSRSSNSRIDRFDKVLQ-SYGLTVITRRTRGEDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQL ++ D+
Sbjct: 346 GQLAGDVFDR 355
>UNIPROTKB|Q83C77 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 70/189 (37%), Positives = 113/189 (59%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+ +M + +S R+T+ST G++ A+ + + P ++LAVSLHA
Sbjct: 161 MGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESP-VSLAVSLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + + L++L+ ++Y + S++ + EY+M++G+ND A QL +L
Sbjct: 220 PNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRL 279
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L +NLIPFN + +R S++ +S FQK L + T VR+ G DI+GACG
Sbjct: 280 LADVPCKINLIPFNSFQGTA-YRCSTESAISVFQKCLMDA-GFNTRVRRTRGDDIAGACG 337
Query: 179 QLVVNLPDK 187
QL D+
Sbjct: 338 QLAGQFHDR 346
>TIGR_CMR|CBU_1252 [details] [associations]
symbol:CBU_1252 "radical SAM enzyme, Cfr family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:NP_820246.1 ProteinModelPortal:Q83C77 GeneID:1209157
KEGG:cbu:CBU_1252 PATRIC:17931237 ProtClustDB:CLSK914643
BioCyc:CBUR227377:GJ7S-1238-MONOMER Uniprot:Q83C77
Length = 370
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 70/189 (37%), Positives = 113/189 (59%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+ +M + +S R+T+ST G++ A+ + + P ++LAVSLHA
Sbjct: 161 MGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLREESP-VSLAVSLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + + L++L+ ++Y + S++ + EY+M++G+ND A QL +L
Sbjct: 220 PNDALRNVLIPLNKKYSLDQLIPLCRDYYSRGSKRCVTFEYVMIEGMNDRLIDAKQLIRL 279
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L +NLIPFN + +R S++ +S FQK L + T VR+ G DI+GACG
Sbjct: 280 LADVPCKINLIPFNSFQGTA-YRCSTESAISVFQKCLMDA-GFNTRVRRTRGDDIAGACG 337
Query: 179 QLVVNLPDK 187
QL D+
Sbjct: 338 QLAGQFHDR 346
>TAIR|locus:2043225 [details] [associations]
symbol:AT2G39670 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006364 "rRNA processing"
evidence=IEA;RCA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0009658 "chloroplast organization" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 EMBL:CP002685 Gene3D:3.20.20.70 GO:GO:0051536
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048
IPI:IPI00528130 RefSeq:NP_850319.1 UniGene:At.24979
ProteinModelPortal:F4IVY6 SMR:F4IVY6 PRIDE:F4IVY6
EnsemblPlants:AT2G39670.2 GeneID:818550 KEGG:ath:AT2G39670
OMA:KEHAEAV PhylomeDB:F4IVY6 Uniprot:F4IVY6
Length = 431
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 71/182 (39%), Positives = 110/182 (60%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEP+ N ++++A R + ++ + IT+STVG+ + I K S LAVSLHAP
Sbjct: 226 MGEPMLNLKSVLDAHRCLNK-DIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAP 284
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
Q +R +I+P+A+A+PLE +M ++Y + + +++ EY +L GVND+ +HA +L +LL
Sbjct: 285 NQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGVNDQVEHAVELAELLR 344
Query: 121 TFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIP+NPI S+++ V +F L S I +VR+ G D S ACG
Sbjct: 345 EWGKTYHVNLIPYNPIEG-SEYQRPYKKAVLAFAAALE-SRKITASVRQTRGLDASAACG 402
Query: 179 QL 180
QL
Sbjct: 403 QL 404
>TIGR_CMR|CJE_1882 [details] [associations]
symbol:CJE_1882 "radical SAM enzyme, Cfr family"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_179852.1 ProteinModelPortal:Q5HS83 STRING:Q5HS83
GeneID:3230641 KEGG:cjr:CJE1882 PATRIC:20045594
ProtClustDB:PRK14462 BioCyc:CJEJ195099:GJC0-1921-MONOMER
Uniprot:Q5HS83
Length = 356
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 68/183 (37%), Positives = 112/183 (61%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+N + +AV+I+ GL +SP+R T+ST G+ I + G+ LA+SL
Sbjct: 171 MGEPLDNLKNVSKAVKILAQNEGLA--ISPRRQTISTSGLAKQIKELGQMNLGVLLAISL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA ++R ++MP +A+ + +M+A++E+ + ++++ EY+++DG+ND+ +HA +L K
Sbjct: 229 HAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVK 288
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL + VNLI FNP R S ++ + FQ +L + T+R+ G DIS AC
Sbjct: 289 LLNGIKAKVNLILFNPHEGGLYKRPSLENAIK-FQDLLSNK-GVTCTIRESKGLDISAAC 346
Query: 178 GQL 180
GQL
Sbjct: 347 GQL 349
>UNIPROTKB|Q81WH4 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 69/183 (37%), Positives = 106/183 (57%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY L+ +RI+ GL + + +TVST GI+ I KF + +N A+SL
Sbjct: 174 IGEPFDNYDNLMGFLRIINHEKGL--HIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP RA+ L LM A+K Y + ++I EY + G ND+ +HA +L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGRRITFEYGLFGGENDQVEHAEELAA 291
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ + VNLIP N + RT + ++ F+K L+ + T+R++ G DI AC
Sbjct: 292 LLKGVKCHVNLIPVNYVPERDYVRTPRE-QIFLFEKTLKDR-GVNVTIRREQGHDIDAAC 349
Query: 178 GQL 180
GQL
Sbjct: 350 GQL 352
>TIGR_CMR|BA_4002 [details] [associations]
symbol:BA_4002 "conserved hypothetical protein TIGR00048"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
RefSeq:NP_846244.1 RefSeq:YP_020642.1 RefSeq:YP_029966.1
ProteinModelPortal:Q81WH4 DNASU:1086738
EnsemblBacteria:EBBACT00000012863 EnsemblBacteria:EBBACT00000014022
EnsemblBacteria:EBBACT00000019317 GeneID:1086738 GeneID:2815920
GeneID:2848017 KEGG:ban:BA_4002 KEGG:bar:GBAA_4002 KEGG:bat:BAS3715
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
ProtClustDB:PRK14455 BioCyc:BANT260799:GJAJ-3773-MONOMER
BioCyc:BANT261594:GJ7F-3890-MONOMER GO:GO:0070040
TIGRFAMs:TIGR00048 Uniprot:Q81WH4
Length = 362
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 69/183 (37%), Positives = 106/183 (57%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY L+ +RI+ GL + + +TVST GI+ I KF + +N A+SL
Sbjct: 174 IGEPFDNYDNLMGFLRIINHEKGL--HIGARHMTVSTSGIIPKIYKFAEEDLQINFAISL 231
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP RA+ L LM A+K Y + ++I EY + G ND+ +HA +L
Sbjct: 232 HAPNSELRSKLMPINRAYKLPDLMEAIKYYVNRTGRRITFEYGLFGGENDQVEHAEELAA 291
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ + VNLIP N + RT + ++ F+K L+ + T+R++ G DI AC
Sbjct: 292 LLKGVKCHVNLIPVNYVPERDYVRTPRE-QIFLFEKTLKDR-GVNVTIRREQGHDIDAAC 349
Query: 178 GQL 180
GQL
Sbjct: 350 GQL 352
>UNIPROTKB|Q74E53 [details] [associations]
symbol:rlmN "Dual-specificity RNA methyltransferase RlmN"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 77/204 (37%), Positives = 110/204 (53%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N ++ A++IM GL F S +RITVST G+V + + + +NLAVSL
Sbjct: 157 MGEPLANLDNVIRALQIMLHDDGLQF--STRRITVSTAGLVPEMERLGRSVT-VNLAVSL 213
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
+A ++R +IMP R +PL L++A + + ++KI IEY++L GVND A +L +
Sbjct: 214 NATTDELRDRIMPINRKYPLAVLLDACRRFPLPGRRKITIEYVLLGGVNDTLDDAKRLVR 273
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFN S FR+ S D + F + L + R G DIS AC
Sbjct: 274 LLSDIPSKINLIPFNEHEGCS-FRSPSQDAIDRFHRYLLDKH-FTVITRSSRGADISAAC 331
Query: 178 GQLVVNLPDKISAKSTPPVTDIED 201
GQL L D + ++ D
Sbjct: 332 GQLKGKL-DALKPSGAGKQIEVSD 354
>TIGR_CMR|GSU_1111 [details] [associations]
symbol:GSU_1111 "conserved hypothetical protein TIGR00048"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 GO:GO:0070040
TIGRFAMs:TIGR00048 HOGENOM:HOG000217992 OMA:IYHFGVS
RefSeq:NP_952164.1 ProteinModelPortal:Q74E53 GeneID:2688552
KEGG:gsu:GSU1111 PATRIC:22024984 ProtClustDB:PRK14463
BioCyc:GSUL243231:GH27-1106-MONOMER Uniprot:Q74E53
Length = 360
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 77/204 (37%), Positives = 110/204 (53%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N ++ A++IM GL F S +RITVST G+V + + + +NLAVSL
Sbjct: 157 MGEPLANLDNVIRALQIMLHDDGLQF--STRRITVSTAGLVPEMERLGRSVT-VNLAVSL 213
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
+A ++R +IMP R +PL L++A + + ++KI IEY++L GVND A +L +
Sbjct: 214 NATTDELRDRIMPINRKYPLAVLLDACRRFPLPGRRKITIEYVLLGGVNDTLDDAKRLVR 273
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFN S FR+ S D + F + L + R G DIS AC
Sbjct: 274 LLSDIPSKINLIPFNEHEGCS-FRSPSQDAIDRFHRYLLDKH-FTVITRSSRGADISAAC 331
Query: 178 GQLVVNLPDKISAKSTPPVTDIED 201
GQL L D + ++ D
Sbjct: 332 GQLKGKL-DALKPSGAGKQIEVSD 354
>UNIPROTKB|Q723G9 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:265669 "Listeria monocytogenes
serotype 4b str. F2365" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 ProtClustDB:PRK14455
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_013115.1
ProteinModelPortal:Q723G9 STRING:Q723G9 GeneID:2797600
KEGG:lmf:LMOf2365_0509 PATRIC:20322220 OMA:LRTINDD Uniprot:Q723G9
Length = 367
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 68/185 (36%), Positives = 107/185 (57%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R++ GL + + ITVST G+ I F ++ +NLA+SL
Sbjct: 163 IGEPFDNYDNVMDFLRVINHDKGLA--IGARHITVSTSGLAPRIIDFANEDFQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM + + +EKLM A+ Y + ++I EYIML GVND ++ A +L
Sbjct: 221 HAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEALELAA 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + VNLIP+NP+ + S+ + V +F L+ + I +R++ G DI
Sbjct: 281 LLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKN-GINCVIRREHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>UNIPROTKB|Q3AC22 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 OMA:MACDFCA GO:GO:0070040 TIGRFAMs:TIGR00048
RefSeq:YP_360312.1 ProteinModelPortal:Q3AC22 STRING:Q3AC22
GeneID:3728344 KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 63/180 (35%), Positives = 112/180 (62%)
Query: 2 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL+N+ +++ +R + +S ++ITVST G+V I + + LA+SLHAP
Sbjct: 158 GEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAP 217
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+R +++P + + L +L++A + + +++ EY +++ VND +HA +L +LL+
Sbjct: 218 DDALRNELIPINKRWGLAELLDAAWYFIDKTGRRVSFEYALIENVNDTVEHALKLAQLLQ 277
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
V VNLIP+N I F+T S +K++ F+++L+ + I TVR+++G +I GACGQL
Sbjct: 278 RKLVHVNLIPYNTIEK-RNFKTPSVEKINKFKEVLKRA-GIPVTVRRELGDEIDGACGQL 335
>TIGR_CMR|CHY_1480 [details] [associations]
symbol:CHY_1480 "radical SAM enzyme, Cfr family"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01849 InterPro:IPR004383
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013785
Pfam:PF04055 PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
eggNOG:COG0820 HOGENOM:HOG000217991 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 RefSeq:YP_360312.1
ProteinModelPortal:Q3AC22 STRING:Q3AC22 GeneID:3728344
KEGG:chy:CHY_1480 PATRIC:21276091
BioCyc:CHYD246194:GJCN-1479-MONOMER Uniprot:Q3AC22
Length = 342
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 63/180 (35%), Positives = 112/180 (62%)
Query: 2 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL+N+ +++ +R + +S ++ITVST G+V I + + LA+SLHAP
Sbjct: 158 GEPLDNFTEVLKFMRKINEKDCLNISYRKITVSTCGMVPQIKALAEEKLPVTLAISLHAP 217
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+R +++P + + L +L++A + + +++ EY +++ VND +HA +L +LL+
Sbjct: 218 DDALRNELIPINKRWGLAELLDAAWYFIDKTGRRVSFEYALIENVNDTVEHALKLAQLLQ 277
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
V VNLIP+N I F+T S +K++ F+++L+ + I TVR+++G +I GACGQL
Sbjct: 278 RKLVHVNLIPYNTIEK-RNFKTPSVEKINKFKEVLKRA-GIPVTVRRELGDEIDGACGQL 335
>TIGR_CMR|SPO_3346 [details] [associations]
symbol:SPO_3346 "radical SAM enzyme, Cfr family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0051539
GO:GO:0008033 GO:GO:0001510 eggNOG:COG0820 KO:K06941 OMA:MACDFCA
GO:GO:0070040 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
RefSeq:YP_168542.1 ProteinModelPortal:Q5LN66 GeneID:3195026
KEGG:sil:SPO3346 PATRIC:23380143 ProtClustDB:CLSK934133
Uniprot:Q5LN66
Length = 393
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 68/185 (36%), Positives = 113/185 (61%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ + +A++I M Q+S +RIT+ST G+V I + ++ G LA+S HA
Sbjct: 193 MGEPLYNFDNVRDAMKIAMDPEGIQLSRRRITLSTSGVVPEIARTAEEI-GCLLAISFHA 251
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR ++P + + +E+L++AL Y K ++ ++I EY+MLDGVND + AH+L
Sbjct: 252 TTDEVRDVLVPINKRWNIEELLSALAAYPKVSNSERITFEYVMLDGVNDSDADAHRLLDH 311
Query: 119 LETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISG 175
+ +++ +NLIPFN + ++ SS++++ +F I+ + Y +RK G DI
Sbjct: 312 IRRYKIPAKINLIPFNEWPG-APYKRSSNNRIRAFANIIYQAGY--AAPIRKTRGDDIMA 368
Query: 176 ACGQL 180
ACGQL
Sbjct: 369 ACGQL 373
>TAIR|locus:2195608 [details] [associations]
symbol:AT1G60230 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] HAMAP:MF_01849
InterPro:IPR004383 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013785 Pfam:PF04055 SMART:SM00729 EMBL:CP002684
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0051536 GO:GO:0006364
GO:GO:0008173 GO:GO:0001510 TIGRFAMs:TIGR00048 HOGENOM:HOG000217992
OMA:IYHFGVS UniGene:At.43275 UniGene:At.64986 EMBL:AY054695
EMBL:AY081476 IPI:IPI00549143 RefSeq:NP_564755.1
ProteinModelPortal:Q93XX3 SMR:Q93XX3 EnsemblPlants:AT1G60230.1
GeneID:842318 KEGG:ath:AT1G60230 TAIR:At1g60230 InParanoid:Q93XX3
PhylomeDB:Q93XX3 ProtClustDB:CLSN2688935 ArrayExpress:Q93XX3
Genevestigator:Q93XX3 Uniprot:Q93XX3
Length = 458
Score = 272 (100.8 bits), Expect = 3.0e-23, P = 3.0e-23
Identities = 71/185 (38%), Positives = 102/185 (55%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP +N +++A IM GL F SP+++TVST G+V + +F + LAVSL
Sbjct: 255 MGEPFHNIDNVIKAANIMVDENGLHF--SPRKVTVSTSGLVPQLKRFLRE-SNCALAVSL 311
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKE-YQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
+A +VR IMP R + L L+ L+E + K+ EY+ML GVND A +L
Sbjct: 312 NATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDSMDDARRLV 371
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISG 175
+L++ +NLI FNP S SQF + +DK+ F+ +L G + +R G D
Sbjct: 372 ELVQGIPCKINLIQFNP-HSGSQFIQTEEDKMIKFRNVLAEGGCTV--LMRFSRGNDQMA 428
Query: 176 ACGQL 180
ACGQL
Sbjct: 429 ACGQL 433
>UNIPROTKB|P0A644 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:1773 "Mycobacterium tuberculosis"
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005886 GO:GO:0005737
GO:GO:0005618 Gene3D:3.20.20.70 EMBL:AE000516
GenomeReviews:AE000516_GR GO:GO:0046872 GO:GO:0051539 GO:GO:0008033
EMBL:BX842581 GO:GO:0001510 eggNOG:COG0820 HOGENOM:HOG000217991
KO:K06941 GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:B70924 PIR:C70924
RefSeq:NP_217395.1 RefSeq:NP_217396.1 RefSeq:NP_337458.1
ProteinModelPortal:P0A644 SMR:P0A644 PRIDE:P0A644
EnsemblBacteria:EBMYCT00000003622 EnsemblBacteria:EBMYCT00000071511
GeneID:887156 GeneID:887810 GeneID:925333 KEGG:mtc:MT2947
KEGG:mtu:Rv2879c KEGG:mtu:Rv2880c TubercuList:Rv2879c
TubercuList:Rv2880c ProtClustDB:CLSK792141 Uniprot:P0A644
Length = 364
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 68/186 (36%), Positives = 99/186 (53%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL NYA ++ AV+ +T P F +S + +TVSTVG+ AI G+ LA+SL
Sbjct: 176 MGEPLANYARVLAAVQRITARPPSGFGISARAVTVSTVGLAPAIRNLADARLGVTLALSL 235
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R ++P + + + ++A + Y + +++ IEY ++ VND+ A LGK
Sbjct: 236 HAPDDGLRDTLVPVNNRWRISEALDAARYYANVTGRRVSIEYALIRDVNDQPWRADLLGK 295
Query: 118 LLETFQ---VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L VNLIP NP S + S F K +R + TVR G++IS
Sbjct: 296 RLHRVLGPLAHVNLIPLNPTPG-SDWDASPKPVEREFVKRVRAK-GVSCTVRDTRGREIS 353
Query: 175 GACGQL 180
ACGQL
Sbjct: 354 AACGQL 359
>UNIPROTKB|O83107 [details] [associations]
symbol:rlmN "Probable dual-specificity RNA
methyltransferase RlmN" species:243276 "Treponema pallidum subsp.
pallidum str. Nichols" [GO:0005515 "protein binding" evidence=IPI]
HAMAP:MF_01849 InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0046872 GO:GO:0051539 GO:GO:0008033 GO:GO:0001510
EMBL:AE000520 GenomeReviews:AE000520_GR eggNOG:COG0820 KO:K06941
GO:GO:0070040 TIGRFAMs:TIGR00048 PIR:D71371 RefSeq:NP_218508.1
ProteinModelPortal:O83107 IntAct:O83107 GeneID:2611395
KEGG:tpa:TP0068 PATRIC:20530073 OMA:EMVFIPD ProtClustDB:CLSK218510
Uniprot:O83107
Length = 340
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 64/181 (35%), Positives = 99/181 (54%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N A+ A+ I++ + +S KRIT+ST G I + LAVSL
Sbjct: 156 MGEPMLNLDAVCRAIEILSHPQGRDLSEKRITISTSGHCRGIYSLADRALQVRLAVSLTT 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+R ++MP A L KL +A++ + + S +++ +E ++ GVN E+HA ++
Sbjct: 216 ANAPLRARLMPRAAHDSLAKLKSAIRYFNEKSGKRVTLELALMRGVNTSERHAQEVIDFA 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
V VNLIP+NP+ S+ F T + +V+ F+ +L + I T R Q G I GACGQ
Sbjct: 276 HGLNVHVNLIPWNPVASI-HFETPREVEVAHFEALLMRA-RIPVTRRYQRGNGIGGACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>GENEDB_PFALCIPARUM|PF14_0066 [details] [associations]
symbol:PF14_0066 "radical SAM protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 63/196 (32%), Positives = 104/196 (53%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + ++++ F +S +RI +STVG++ I K ++ P +NLA SLH+
Sbjct: 154 MGEPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHS 212
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG--- 116
P + R Q++P + FP ++ + L E + ++++I YI++ +ND + HA L
Sbjct: 213 PFTEERDQLVPINKLFPFNEVFDLLDERIAKTGRRVWISYILIKNLNDSKDHAEALSDHI 272
Query: 117 -KLLETFQVVVN--LIPFNPIGSVSQ-FRTSSD-DKVSSFQKILRGSYNIRTTVRKQMGQ 171
K + + N LIP+N +V + F D +K+ F+KIL+ + I R G
Sbjct: 273 CKRPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKN-GISFFYRNSFGY 331
Query: 172 DISGACGQLVVNLPDK 187
I ACGQL + K
Sbjct: 332 SIDAACGQLYADYEPK 347
>UNIPROTKB|Q8IM25 [details] [associations]
symbol:PF14_0066 "Radical SAM protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004383 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013785 Pfam:PF04055
PIRSF:PIRSF006004 SMART:SM00729 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0051536 EMBL:AE014187 GO:GO:0006364 GO:GO:0008173
GO:GO:0001510 HOGENOM:HOG000217991 TIGRFAMs:TIGR00048
RefSeq:XP_001348239.2 ProteinModelPortal:Q8IM25
EnsemblProtists:PF14_0066:mRNA GeneID:811648 KEGG:pfa:PF14_0066
EuPathDB:PlasmoDB:PF3D7_1406900 KO:K15632 ProtClustDB:CLSZ2428899
Uniprot:Q8IM25
Length = 362
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 63/196 (32%), Positives = 104/196 (53%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + ++++ F +S +RI +STVG++ I K ++ P +NLA SLH+
Sbjct: 154 MGEPLAN-PYVFDSIQFFNDNNLFSISNRRINISTVGLLPGIKKLNNIFPQVNLAFSLHS 212
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG--- 116
P + R Q++P + FP ++ + L E + ++++I YI++ +ND + HA L
Sbjct: 213 PFTEERDQLVPINKLFPFNEVFDLLDERIAKTGRRVWISYILIKNLNDSKDHAEALSDHI 272
Query: 117 -KLLETFQVVVN--LIPFNPIGSVSQ-FRTSSD-DKVSSFQKILRGSYNIRTTVRKQMGQ 171
K + + N LIP+N +V + F D +K+ F+KIL+ + I R G
Sbjct: 273 CKRPNNIRYLYNVCLIPYNKAKNVDENFHRLDDAEKILQFEKILKKN-GISFFYRNSFGY 331
Query: 172 DISGACGQLVVNLPDK 187
I ACGQL + K
Sbjct: 332 SIDAACGQLYADYEPK 347
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 205 205 0.00096 111 3 11 22 0.48 32
31 0.47 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 559 (59 KB)
Total size of DFA: 144 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.09u 0.07s 20.16t Elapsed: 00:00:02
Total cpu time: 20.10u 0.07s 20.17t Elapsed: 00:00:02
Start: Sat May 11 07:47:47 2013 End: Sat May 11 07:47:49 2013