BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028700
(205 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224060769|ref|XP_002300266.1| predicted protein [Populus trichocarpa]
gi|222847524|gb|EEE85071.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 355 bits (910), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 176/208 (84%), Positives = 187/208 (89%), Gaps = 7/208 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY+ALVEAVR M+G+PFQ+SPKRITVSTVGI+HAINK H DLPGLNLAVSLHAP
Sbjct: 169 MGEPLNNYSALVEAVRAMSGVPFQLSPKRITVSTVGIIHAINKLHKDLPGLNLAVSLHAP 228
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQDVRCQIMPAARAFPLEKLM+AL+ YQKNS QKIFIEYIMLDGVNDEEQHAHQLGKLLE
Sbjct: 229 VQDVRCQIMPAARAFPLEKLMDALQVYQKNSMQKIFIEYIMLDGVNDEEQHAHQLGKLLE 288
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TF VVVNLIPFNPIGS+SQFRTSS++KV FQKILRG NIRTTVRKQMGQDISGACGQL
Sbjct: 289 TFDVVVNLIPFNPIGSLSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQDISGACGQL 348
Query: 181 VVNLPDKISAKSTPP---VTDIEDLCIR 205
VVNLPD + PP VTDIEDL R
Sbjct: 349 VVNLPD----EKKPPNLGVTDIEDLVSR 372
>gi|449438321|ref|XP_004136937.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like
[Cucumis sativus]
gi|449495695|ref|XP_004159917.1| PREDICTED: dual-specificity RNA methyltransferase RlmN 1-like
[Cucumis sativus]
Length = 384
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/202 (82%), Positives = 187/202 (92%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY++LVEAVR M PF +SPKRIT+STVGI+HAINK HSDLPGLNLAVSLHAP
Sbjct: 181 MGEPLNNYSSLVEAVRAMMAPPFLLSPKRITISTVGIIHAINKLHSDLPGLNLAVSLHAP 240
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQD+RCQIMPAARAFPL+KLM+AL+EYQK SQQKI IEYIMLDGVNDEEQHAHQLGKLLE
Sbjct: 241 VQDIRCQIMPAARAFPLQKLMDALQEYQKKSQQKILIEYIMLDGVNDEEQHAHQLGKLLE 300
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQV+VNLIPFNPIGS SQF+TSSD+KVS FQ++LRG+YNIRTT+RKQMGQDISGACGQL
Sbjct: 301 TFQVIVNLIPFNPIGSSSQFKTSSDEKVSVFQQVLRGTYNIRTTIRKQMGQDISGACGQL 360
Query: 181 VVNLPDKISAKSTPPVTDIEDL 202
VV+LP++ S+K + V DIEDL
Sbjct: 361 VVSLPNRSSSKQSSVVPDIEDL 382
>gi|225428987|ref|XP_002265287.1| PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis
vinifera]
gi|147817733|emb|CAN60150.1| hypothetical protein VITISV_044331 [Vitis vinifera]
gi|296083052|emb|CBI22456.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 166/202 (82%), Positives = 181/202 (89%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY+ALVEA+ IM G PFQ+SPK+ITVSTVGI+HAINK SDLP LNLAVSLHAP
Sbjct: 169 MGEPLNNYSALVEAIHIMQGSPFQLSPKKITVSTVGIIHAINKLQSDLPNLNLAVSLHAP 228
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQD+RCQIMPAARAFPLEKLM+ L+ YQ NS QKIFIEYIMLD VNDEEQHAHQLGKLLE
Sbjct: 229 VQDIRCQIMPAARAFPLEKLMDTLRTYQTNSGQKIFIEYIMLDEVNDEEQHAHQLGKLLE 288
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVVVNLIPFNPIG++S F+TSS+ KV+ FQKILRG+YNIRTTVRKQMGQDISGACGQL
Sbjct: 289 TFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYNIRTTVRKQMGQDISGACGQL 348
Query: 181 VVNLPDKISAKSTPPVTDIEDL 202
VVN PDK S S +TDIEDL
Sbjct: 349 VVNQPDKRSTGSAGLLTDIEDL 370
>gi|357480659|ref|XP_003610615.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
gi|355511950|gb|AES93573.1| Ribosomal RNA large subunit methyltransferase N [Medicago
truncatula]
Length = 380
Score = 342 bits (876), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 162/204 (79%), Positives = 186/204 (91%), Gaps = 1/204 (0%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY+A+VE+VRIM+G PFQ+S KRITVSTVGI+H+INK H+D+PGLNLAVSLHAP
Sbjct: 178 MGEPLNNYSAVVESVRIMSGSPFQLSLKRITVSTVGIIHSINKLHNDVPGLNLAVSLHAP 237
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPLEKLM +L+EYQ+ S QKI IEYIMLDGVNDEEQHAH LGKLLE
Sbjct: 238 AQDIRCQIMPAARAFPLEKLMASLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLE 297
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TF+VVVNLIPFN IG++SQF+++S+ KVS FQKILRG+YNIRTTVRKQMG+DISGACGQL
Sbjct: 298 TFEVVVNLIPFNSIGTLSQFKSTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQL 357
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VVNLPDK S + P+TDIEDL I
Sbjct: 358 VVNLPDK-SLGNANPLTDIEDLVI 380
>gi|356539162|ref|XP_003538069.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 1-like
[Glycine max]
Length = 378
Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 162/204 (79%), Positives = 184/204 (90%), Gaps = 1/204 (0%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY+A+VEAVRIMTGLPFQ+S KRIT+STVGI+HAINK H DLPGLNLAVSLHAP
Sbjct: 176 MGEPLNNYSAVVEAVRIMTGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHAP 235
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPL KLM++L+ YQ+ S QKIFIEYIMLDGVNDEE HAH LGKLLE
Sbjct: 236 AQDIRCQIMPAARAFPLGKLMDSLQVYQRKSLQKIFIEYIMLDGVNDEEHHAHLLGKLLE 295
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVVVNLIPFN IG++SQF+ +S+ KVS+FQKILRG+YNIRTTVRKQMGQDISGACGQL
Sbjct: 296 TFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQL 355
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
+VN+ DK S + P+TDIED+ I
Sbjct: 356 LVNISDK-SLGTAVPLTDIEDIVI 378
>gi|255632735|gb|ACU16719.1| unknown [Glycine max]
Length = 245
Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/204 (78%), Positives = 183/204 (89%), Gaps = 1/204 (0%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY+A+VEAVRIMTGLPFQ+S KRIT+STVGI+HAINK H DLPGLNLAVSLHAP
Sbjct: 43 MGEPLNNYSAVVEAVRIMTGLPFQLSSKRITISTVGIIHAINKLHDDLPGLNLAVSLHAP 102
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPL KLM++L+ YQ+ S QKIFIEYIMLDGVNDEE HAH LGKLLE
Sbjct: 103 AQDIRCQIMPAARAFPLGKLMDSLQVYQRKSLQKIFIEYIMLDGVNDEEHHAHLLGKLLE 162
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVVVNLIPFN IG++SQF+ +S+ KVS+FQKILRG+YNIRTTVRKQMG+DISGACGQL
Sbjct: 163 TFQVVVNLIPFNSIGTLSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGRDISGACGQL 222
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
+VN+ DK + P+TDIED+ I
Sbjct: 223 LVNISDK-PLGTAVPLTDIEDIVI 245
>gi|388521505|gb|AFK48814.1| unknown [Lotus japonicus]
Length = 385
Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/204 (77%), Positives = 181/204 (88%), Gaps = 1/204 (0%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY+A+V+AVRIMTG PFQ+S KRIT+STVGI+H+I + H+DLPGLNLAVSLHAP
Sbjct: 183 MGEPLNNYSAVVQAVRIMTGSPFQLSFKRITISTVGIIHSIKRLHNDLPGLNLAVSLHAP 242
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPLEKLM++L+EYQ S KI IEYIMLDGVNDEEQHA QLGKLL+
Sbjct: 243 AQDIRCQIMPAARAFPLEKLMDSLQEYQTKSLHKILIEYIMLDGVNDEEQHARQLGKLLQ 302
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVVVNLIPFN IG +S+F+ SS+ KVS F+KILRGSYNIRTTVRKQMG+ ISGACGQL
Sbjct: 303 TFQVVVNLIPFNSIGILSEFKPSSEQKVSKFRKILRGSYNIRTTVRKQMGEGISGACGQL 362
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VVNLPDK S + P+TDIEDL I
Sbjct: 363 VVNLPDK-SLGNQDPLTDIEDLVI 385
>gi|357113533|ref|XP_003558557.1| PREDICTED: ribosomal RNA large subunit methyltransferase N 2-like
[Brachypodium distachyon]
Length = 382
Score = 328 bits (842), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 154/204 (75%), Positives = 179/204 (87%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY A+VEA+ ++TG PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP
Sbjct: 179 MGEPLNNYTAVVEAIHVLTGPPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAP 238
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLE
Sbjct: 239 DQDIRCQIMPAARAFPLGKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLE 298
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TF+ VVNLIPFNPIGS S F+TSSD V FQK+LRG Y+IRTTVR++MGQDI+GACGQL
Sbjct: 299 TFKAVVNLIPFNPIGSSSNFKTSSDQSVKKFQKVLRGVYSIRTTVRQEMGQDIAGACGQL 358
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VV+LPD+ SA ++DIEDL I
Sbjct: 359 VVSLPDERSAGGATLLSDIEDLRI 382
>gi|15230899|ref|NP_188597.1| radical SAM domain-containing protein [Arabidopsis thaliana]
gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis thaliana]
gi|28827394|gb|AAO50541.1| unknown protein [Arabidopsis thaliana]
gi|332642748|gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana]
Length = 372
Score = 328 bits (840), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 156/204 (76%), Positives = 178/204 (87%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY A+VEAVR+M PFQ+SPKRIT+STVGIVHAINK H+DLPG++LAVSLHAP
Sbjct: 169 MGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAP 228
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQ++RCQIMPAARAFPL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+
Sbjct: 229 VQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLK 288
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVV+NLIPFNPIGS SQF TSS VS FQKILR +Y IRTT+RK+MGQDISGACGQL
Sbjct: 289 TFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQL 348
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VVN PD T + DIEDL +
Sbjct: 349 VVNQPDIKKTPGTVELRDIEDLLL 372
>gi|9294428|dbj|BAB02548.1| unnamed protein product [Arabidopsis thaliana]
Length = 382
Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/204 (76%), Positives = 178/204 (87%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY A+VEAVR+M PFQ+SPKRIT+STVGIVHAINK H+DLPG++LAVSLHAP
Sbjct: 179 MGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAP 238
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQ++RCQIMPAARAFPL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+
Sbjct: 239 VQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLK 298
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVV+NLIPFNPIGS SQF TSS VS FQKILR +Y IRTT+RK+MGQDISGACGQL
Sbjct: 299 TFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQL 358
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VVN PD T + DIEDL +
Sbjct: 359 VVNQPDIKKTPGTVELRDIEDLLL 382
>gi|242036573|ref|XP_002465681.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
gi|241919535|gb|EER92679.1| hypothetical protein SORBIDRAFT_01g043670 [Sorghum bicolor]
Length = 381
Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/204 (75%), Positives = 178/204 (87%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEP+NNY ALVEA+ + TG PFQ+SPKRITVSTVGI+H INKF++DLP +NLAVSLHAP
Sbjct: 178 MGEPMNNYNALVEAIGVFTGSPFQLSPKRITVSTVGIIHGINKFNADLPKVNLAVSLHAP 237
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+E+HAHQLGKLLE
Sbjct: 238 DQDIRCQIMPAARAFPLVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEEHAHQLGKLLE 297
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TF+ VVNLIPFNPIGS+S F+TSSD V FQK+L+G Y+IRTTVR+QMGQDI+GACGQL
Sbjct: 298 TFKAVVNLIPFNPIGSLSNFKTSSDQNVKKFQKVLKGIYHIRTTVRQQMGQDIAGACGQL 357
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VV+LPD+ SA ++DIEDL I
Sbjct: 358 VVSLPDERSAGGATLLSDIEDLRI 381
>gi|297834876|ref|XP_002885320.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
gi|297331160|gb|EFH61579.1| hypothetical protein ARALYDRAFT_318717 [Arabidopsis lyrata subsp.
lyrata]
Length = 382
Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 156/202 (77%), Positives = 177/202 (87%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY A+VEAVR+M PFQ+SPKRIT+STVGIVHAINK +DLPG++LAVSLHAP
Sbjct: 179 MGEPLNNYNAVVEAVRVMLKQPFQLSPKRITISTVGIVHAINKLDNDLPGVSLAVSLHAP 238
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQ++RCQIMPAARAFPL+KLM+AL+ +QKNSQQKIFIEYIMLDGVND+EQHAH LG+LL+
Sbjct: 239 VQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLK 298
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVV+NLIPFNPIGS SQF TSS VSSFQKILR +Y IRTT+RK+MGQDISGACGQL
Sbjct: 299 TFQVVINLIPFNPIGSTSQFETSSIQSVSSFQKILRETYKIRTTIRKEMGQDISGACGQL 358
Query: 181 VVNLPDKISAKSTPPVTDIEDL 202
VVN PD T + DIEDL
Sbjct: 359 VVNQPDIKKTPGTVELRDIEDL 380
>gi|414865368|tpg|DAA43925.1| TPA: hypothetical protein ZEAMMB73_090029 [Zea mays]
Length = 381
Score = 325 bits (833), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 152/204 (74%), Positives = 176/204 (86%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEP+NNY ALVEA+ + TG PFQ+SPKRITVSTVGI+H INKF+ DLP +NLAVSLHAP
Sbjct: 178 MGEPMNNYNALVEAIGVFTGSPFQLSPKRITVSTVGIIHGINKFNGDLPKVNLAVSLHAP 237
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+E+HAHQLGKLLE
Sbjct: 238 DQDIRCQIMPAARAFPLGKLMNALQSYQNESKQTIFIEYIMLDGVNDQEEHAHQLGKLLE 297
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TF+ VVNLIPFNPIGS S F+TSSD V +FQK+L+G Y IRTT+R+QMGQDI+GACGQL
Sbjct: 298 TFKAVVNLIPFNPIGSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDIAGACGQL 357
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VV+LPD+ SA ++DIEDL I
Sbjct: 358 VVSLPDERSAGGATLLSDIEDLRI 381
>gi|226498566|ref|NP_001144705.1| uncharacterized protein LOC100277741 [Zea mays]
gi|195646072|gb|ACG42504.1| hypothetical protein [Zea mays]
Length = 381
Score = 325 bits (832), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 152/204 (74%), Positives = 176/204 (86%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEP+NNY ALVEA+ + TG PFQ+SPKRITVSTVGI+H INKF+ DLP +NLAVSLHAP
Sbjct: 178 MGEPMNNYNALVEAIGVFTGSPFQLSPKRITVSTVGIIHGINKFNGDLPKVNLAVSLHAP 237
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+E+HAHQLGKLLE
Sbjct: 238 DQDIRCQIMPAARAFPLGKLMNALQSYQNESKQTIFIEYIMLDGVNDQEEHAHQLGKLLE 297
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TF+ VVNLIPFNPIGS S F+TSSD V +FQK+L+G Y IRTT+R+QMGQDI+GACGQL
Sbjct: 298 TFKAVVNLIPFNPIGSSSNFKTSSDQNVKNFQKVLKGIYRIRTTIRQQMGQDIAGACGQL 357
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VV+LPD+ SA ++DIEDL I
Sbjct: 358 VVSLPDERSAGGATLLSDIEDLRI 381
>gi|218192280|gb|EEC74707.1| hypothetical protein OsI_10424 [Oryza sativa Indica Group]
Length = 388
Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 151/204 (74%), Positives = 177/204 (86%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ALVEA++++ G PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP
Sbjct: 185 MGEPLNNYTALVEAIQVLIGSPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAP 244
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RC IMPAARAFPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLE
Sbjct: 245 DQDIRCHIMPAARAFPLVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLE 304
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
F+ VVNLIPFNPIGS + F+TSS+ V FQKILRG YNIRTT+R+QMGQDI+GACGQL
Sbjct: 305 MFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQDIAGACGQL 364
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VV+LPD+ SA ++DIED+ I
Sbjct: 365 VVSLPDERSAGGATLLSDIEDIRI 388
>gi|115451403|ref|NP_001049302.1| Os03g0202300 [Oryza sativa Japonica Group]
gi|108706720|gb|ABF94515.1| radical SAM enzyme, Cfr family protein, expressed [Oryza sativa
Japonica Group]
gi|113547773|dbj|BAF11216.1| Os03g0202300 [Oryza sativa Japonica Group]
Length = 388
Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 151/204 (74%), Positives = 177/204 (86%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ALVEA++++ G PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP
Sbjct: 185 MGEPLNNYTALVEAIQVLIGSPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAP 244
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RC IMPAARAFPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLE
Sbjct: 245 DQDIRCHIMPAARAFPLVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLE 304
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
F+ VVNLIPFNPIGS + F+TSS+ V FQKILRG YNIRTT+R+QMGQDI+GACGQL
Sbjct: 305 MFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQDIAGACGQL 364
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VV+LPD+ SA ++DIED+ I
Sbjct: 365 VVSLPDERSAGGATLLSDIEDIRI 388
>gi|356495821|ref|XP_003516770.1| PREDICTED: LOW QUALITY PROTEIN: ribosomal RNA large subunit
methyltransferase N-like [Glycine max]
Length = 316
Score = 311 bits (798), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 152/204 (74%), Positives = 175/204 (85%), Gaps = 6/204 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY+A+VEAVRIM +S KRIT+STVGI+HAINK H+DL GLNLAVSLHAP
Sbjct: 119 MGEPLNNYSAVVEAVRIMX-----LSSKRITISTVGIIHAINKLHNDLSGLNLAVSLHAP 173
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RCQIMPAARAFPL KLM++L++YQ S QKIFIEYIMLDGVNDEE HAHQLGKL
Sbjct: 174 AQDIRCQIMPAARAFPLGKLMDSLQDYQSKSLQKIFIEYIMLDGVNDEEHHAHQLGKLSR 233
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
TFQVVVNL+PFN IG++SQF+ +S+ VS+F KIL G+Y+IRTTVRKQMGQDISGACGQL
Sbjct: 234 TFQVVVNLMPFNSIGTLSQFKPTSEQNVSNFHKILWGTYHIRTTVRKQMGQDISGACGQL 293
Query: 181 VVNLPDKISAKSTPPVTDIEDLCI 204
VVN+PDK S + P+TDIEDL I
Sbjct: 294 VVNIPDK-SLGNAVPLTDIEDLVI 316
>gi|294461088|gb|ADE76111.1| unknown [Picea sitchensis]
Length = 384
Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/210 (68%), Positives = 172/210 (81%), Gaps = 6/210 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ++VEAVR M G FQ++P+ IT+S VG++H IN DLP +NLAVSLHAP
Sbjct: 172 MGEPLNNYKSVVEAVRSMIGHCFQLAPRHITISAVGVIHCINNLKYDLPNVNLAVSLHAP 231
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+Q++RCQIMPAARAFPL KLM+AL YQ++S++KIFIEYIMLDG+ND+EQ AH LGKLLE
Sbjct: 232 LQEIRCQIMPAARAFPLGKLMDALHAYQEHSKRKIFIEYIMLDGINDQEQQAHLLGKLLE 291
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
++VVVNLI FNPIGS+S++RTS + V FQKILRG YNIRTTVR++MGQDISGACGQL
Sbjct: 292 EYEVVVNLISFNPIGSISKYRTSKKENVELFQKILRGVYNIRTTVRQEMGQDISGACGQL 351
Query: 181 VVNLPDKIS-AK---STPP--VTDIEDLCI 204
VVNL DK S AK S P + DIEDL I
Sbjct: 352 VVNLSDKKSPAKMEYSGKPEGIPDIEDLSI 381
>gi|222624395|gb|EEE58527.1| hypothetical protein OsJ_09817 [Oryza sativa Japonica Group]
Length = 356
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/171 (76%), Positives = 151/171 (88%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ALVEA++++ G PFQ+SPKRITVSTVGI+H+INKF++DLP +NLAVSLHAP
Sbjct: 185 MGEPLNNYTALVEAIQVLIGSPFQLSPKRITVSTVGIIHSINKFNNDLPNINLAVSLHAP 244
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+RC IMPAARAFPL KLMNAL+ YQ S+Q IFIEYIMLDGVND+EQHAHQLGKLLE
Sbjct: 245 DQDIRCHIMPAARAFPLVKLMNALQSYQNESKQTIFIEYIMLDGVNDQEQHAHQLGKLLE 304
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQ 171
F+ VVNLIPFNPIGS + F+TSS+ V FQKILRG YNIRTT+R+QMGQ
Sbjct: 305 MFKAVVNLIPFNPIGSSNNFKTSSEHNVKKFQKILRGIYNIRTTIRQQMGQ 355
>gi|168043878|ref|XP_001774410.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674262|gb|EDQ60773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 372
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/203 (54%), Positives = 155/203 (76%), Gaps = 5/203 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ++VE ++IMTG F +SP ITVSTVG++ I +DLPG+NLA+SLHAP
Sbjct: 173 MGEPLNNYKSVVEGIQIMTGRCFGLSPSHITVSTVGVIPRILSIANDLPGVNLALSLHAP 232
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
Q++RCQI+P A+A+PL KLM AL YQ S++++ +EY+ML G+ND ++ AHQLG LL+
Sbjct: 233 TQELRCQIVPTAKAYPLHKLMAALNSYQTISRRRVLVEYVMLAGINDSDEVAHQLGTLLK 292
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
V +NLIP+NP S S ++ +S + ++ FQKILRG + +RTT+R++MGQDI+GACGQL
Sbjct: 293 DHNVTLNLIPYNPATS-SDYKPTSQEDLTRFQKILRGVHGVRTTIRQEMGQDIAGACGQL 351
Query: 181 VVNLPDKISAKSTPPVTDIEDLC 203
V++ S K +P +TDIED+C
Sbjct: 352 VISQ----SVKQSPKLTDIEDMC 370
>gi|255573175|ref|XP_002527517.1| catalytic, putative [Ricinus communis]
gi|223533157|gb|EEF34915.1| catalytic, putative [Ricinus communis]
Length = 337
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/124 (84%), Positives = 115/124 (92%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ALVEA+R+M G PFQ+SPK+ITVSTVG++HAINK DLPGLNLAVSLHAP
Sbjct: 211 MGEPLNNYTALVEAIRVMLGSPFQLSPKKITVSTVGVIHAINKLQRDLPGLNLAVSLHAP 270
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
VQD+RC IMPAARAFPLEKLM+AL+ YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE
Sbjct: 271 VQDIRCHIMPAARAFPLEKLMDALQVYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 330
Query: 121 TFQV 124
F+V
Sbjct: 331 AFEV 334
>gi|388496134|gb|AFK36133.1| unknown [Medicago truncatula]
Length = 135
Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 122/136 (89%), Gaps = 1/136 (0%)
Query: 69 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 128
MPAARAFPLEKLM +L+EYQ+ S QKI IEYIMLDGVNDEEQHAH LGKLLETF+VVVNL
Sbjct: 1 MPAARAFPLEKLMASLQEYQRKSLQKILIEYIMLDGVNDEEQHAHLLGKLLETFEVVVNL 60
Query: 129 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKI 188
IPFN IG++SQF+++S+ KVS FQKILRG+YNIRTTVRKQMG+DISGACGQLVVNLPDK
Sbjct: 61 IPFNSIGTLSQFKSTSEQKVSKFQKILRGTYNIRTTVRKQMGEDISGACGQLVVNLPDK- 119
Query: 189 SAKSTPPVTDIEDLCI 204
S + P+TDIEDL I
Sbjct: 120 SLGNANPLTDIEDLVI 135
>gi|302807670|ref|XP_002985529.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
gi|300146735|gb|EFJ13403.1| hypothetical protein SELMODRAFT_122498 [Selaginella moellendorffii]
Length = 374
Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 141/199 (70%), Gaps = 5/199 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ++V+AV+ +TG F +SP RIT+STVGIV I DLPG+NLA+SLHAP
Sbjct: 169 MGEPLNNYNSVVQAVQTLTGRCFGLSPSRITISTVGIVPRILSLAGDLPGVNLALSLHAP 228
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
Q +RCQI+PA+RAF L+KLM A+ YQ +S + +FIEY+ML VND Q A QLG LL
Sbjct: 229 TQALRCQIVPASRAFTLDKLMAAVDAYQASSNRTLFIEYVMLQDVNDSSQDARQLGCLLR 288
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
+VV+NLIP+N V +R + D+V FQKI+R + IRTTVR++MGQDI GACGQL
Sbjct: 289 DRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDIDGACGQL 348
Query: 181 VVNLPDKISAKSTPPVTDI 199
+ K++P + DI
Sbjct: 349 ALK-----KLKASPDMEDI 362
>gi|302810701|ref|XP_002987041.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
gi|300145206|gb|EFJ11884.1| hypothetical protein SELMODRAFT_182858 [Selaginella moellendorffii]
Length = 374
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 141/199 (70%), Gaps = 5/199 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPLNNY ++V+AV+ +TG F +SP RIT+STVGIV I DLPG+NLA+SLHAP
Sbjct: 169 MGEPLNNYNSVVQAVQTLTGRCFGLSPSRITISTVGIVPRILSVAGDLPGVNLALSLHAP 228
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
Q +RCQI+PA+RAF L+KLM A+ YQ +S + +FIEY+ML VND Q A QLG LL
Sbjct: 229 TQALRCQIVPASRAFTLDKLMAAVDAYQASSNRTLFIEYVMLQDVNDSSQDARQLGCLLR 288
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
+VV+NLIP+N V +R + D+V FQKI+R + IRTTVR++MGQDI GACGQL
Sbjct: 289 DRKVVLNLIPYNHTFVVGDYRATPADRVHHFQKIVREEFGIRTTVRQEMGQDIDGACGQL 348
Query: 181 VVNLPDKISAKSTPPVTDI 199
+ +++P + DI
Sbjct: 349 ALK-----KLEASPDMEDI 362
>gi|159463592|ref|XP_001690026.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284014|gb|EDP09764.1| predicted protein [Chlamydomonas reinhardtii]
Length = 374
Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/181 (53%), Positives = 129/181 (71%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNY A+ AV +MT F + + +TVSTVG++ I + DLPG++LA+SLHA
Sbjct: 179 MGEPLNNYEAVRGAVAMMTDSKYFGLRRRHVTVSTVGVIPRIKQLAEDLPGVSLALSLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q++R QI+P+ARA+ L+KLM A++ YQ NS Q++F EY+ML GVND E+ AHQLG+LL
Sbjct: 239 PTQELRLQIVPSARAYKLDKLMEAVRSYQANSSQRVFYEYVMLSGVNDGEEQAHQLGQLL 298
Query: 120 ETFQVVVNLIPFNPIGSVSQ--FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ VV+NLIP+NPI F D V +FQ ILR Y + TT+R++MGQDISGA
Sbjct: 299 KGDDVVINLIPWNPIYQPEGPFFEAPRDGSVGTFQSILRHQYGLHTTIRQEMGQDISGAW 358
Query: 178 G 178
G
Sbjct: 359 G 359
>gi|325192828|emb|CCA27229.1| hypothetical protein SELMODRAFT_122498 [Albugo laibachii Nc14]
Length = 424
Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 138/204 (67%), Gaps = 3/204 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPL NY ++ A++ MT + F ++PK +T+STVG++H I + + D+P + LA+SLHAP
Sbjct: 161 MGEPLQNYDEVIAAIKAMTSV-FGLAPKHVTLSTVGVIHRIQQLNRDVPLVRLALSLHAP 219
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI-FIEYIMLDGVNDEEQHAHQLGKLL 119
Q++R QI+P+++AFPLEKLM A+ ++ + + ++ IEY ML G+ND + AH LGKLL
Sbjct: 220 TQELRSQIVPSSKAFPLEKLMQAIDDHLASREHRVVLIEYCMLKGINDSIETAHLLGKLL 279
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ V +NLIP+N +QF + SD + +FQ ILR YN++ TVR+ G DI GACGQ
Sbjct: 280 QDRSVHINLIPYNTTDVDAQFSSPSDQDIRNFQSILRQDYNLKATVRENHGMDIEGACGQ 339
Query: 180 LVVNLPDKISAKSTPPVT-DIEDL 202
L + + + S + DIEDL
Sbjct: 340 LALKTTSQHATPSKNDIARDIEDL 363
>gi|384252800|gb|EIE26275.1| hypothetical protein COCSUDRAFT_26936 [Coccomyxa subellipsoidea
C-169]
Length = 394
Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 139/208 (66%), Gaps = 3/208 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNY A+ AV +M F + ++T+STVGIV I + DLPG++LA+SLHA
Sbjct: 178 MGEPLNNYEAVRSAVALMIDPSLFSLRRSKVTISTVGIVPRILQLVEDLPGVSLALSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q +R I+P+ARA+ L+KLM A+ Y++ + QKIF+EY+ML+ VND + AH+LG+LL
Sbjct: 238 PNQVLRQSIVPSARAYKLDKLMAAIDTYREKTGQKIFVEYVMLNQVNDAPETAHELGQLL 297
Query: 120 ETFQVVVNLIPFNPIGSVS-QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+++NLIP+NPI S F +V++FQ+I+R Y + TVR++MGQDISGACG
Sbjct: 298 RGKNMILNLIPWNPIYSPDMHFEAPGGTRVAAFQRIVREDYGVFCTVRQEMGQDISGACG 357
Query: 179 QLVVNLPDK-ISAKSTPPVTDIEDLCIR 205
QLVV +S DIE+L R
Sbjct: 358 QLVVEQGGAGCGGQSAGKAADIEELGKR 385
>gi|326434869|gb|EGD80439.1| radical SAM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 138/214 (64%), Gaps = 13/214 (6%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY A+V AVR MT + F +SP RI VSTVG+V + K D+P + LA+SLHA
Sbjct: 188 MGEPLDNYDAVVMAVRGMTDVQRFSLSPSRIAVSTVGVVPKMLKMAEDIPQVGLALSLHA 247
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ------KIFIEYIMLDGVNDEEQHAH 113
P Q++R QI+P A+A+ ++++M A+ + ++ Q + IEY+++D VN E+ AH
Sbjct: 248 PTQELRAQIVPTAKAWHIDRIMAAMDNFIEHRSQVASRKSHVLIEYVLIDNVNSSEEVAH 307
Query: 114 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
QLG+LLE +V++N+IP+NP ++ S + + F +LR Y++RT VR+++GQD+
Sbjct: 308 QLGRLLEGREVILNVIPYNPTDVPHDYKAPSSETLEKFNAVLR-EYDLRTIVRQELGQDV 366
Query: 174 SGACGQLVV-----NLPDKISAKSTPPVTDIEDL 202
+ ACGQLV+ N + TDIED+
Sbjct: 367 NAACGQLVISSQRNNGATAGTGGGACQPTDIEDM 400
>gi|424513724|emb|CCO66346.1| radical SAM enzyme, Cfr family [Bathycoccus prasinos]
Length = 579
Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 125/189 (66%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG----LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVS 56
MGEPLNNY A+V+A+R M+ + F + +I VSTVG++ I +F D P +++A+S
Sbjct: 278 MGEPLNNYDAVVDAIRCMSQSENQMGFNIPCPKICVSTVGVIPNIYRFSEDCPTVSMALS 337
Query: 57 LHAPVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
LHAP Q++R +I+P A A+PL++LM L +Y K+ + + +EY +L G+ND ++ A L
Sbjct: 338 LHAPTQEIRKKIVPMATAYPLDELMRCLDDYLAKSEKNSMLVEYCVLKGINDTKECARLL 397
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
G+LL +VV+N IP+NP ++ + + + ILR Y + TTVR++MG DI+G
Sbjct: 398 GELLGGKKVVLNFIPYNPTDVIAGHERPEMEDIQAMNTILREEYGMTTTVRQEMGSDIAG 457
Query: 176 ACGQLVVNL 184
ACGQL +++
Sbjct: 458 ACGQLAISV 466
>gi|145344512|ref|XP_001416775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577001|gb|ABO95068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 298
Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 119/189 (62%), Gaps = 3/189 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNY +++A+ MT F +SP +ITVSTVG++ + D PG LA+SLHA
Sbjct: 110 MGEPLNNYRNVIDAIEAMTSDKGFGLSPAKITVSTVGVIPRMRTLRRDAPGTRLALSLHA 169
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P Q +R +I+P A A+ LE LM L E+ + + K IEY +L GVND+E A +LG L
Sbjct: 170 PNQALRQKIVPTATAYKLEDLMATLDEHMASGPKMKTMIEYCVLGGVNDDEACARELGAL 229
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISGAC 177
L +V+VNLIP NP + + + + V +IL +++ TTVR +MGQDI+GAC
Sbjct: 230 LRGKEVIVNLIPLNPTDTPAGHVPPTREAVQKMLEILTSPEFDLFTTVRHEMGQDIAGAC 289
Query: 178 GQLVVNLPD 186
GQL + PD
Sbjct: 290 GQLALKTPD 298
>gi|167526355|ref|XP_001747511.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773957|gb|EDQ87591.1| predicted protein [Monosiga brevicollis MX1]
Length = 1527
Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 138/215 (64%), Gaps = 11/215 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY A+ AV MT + F + +I+VSTVG+V I++ D+P + LA+SLHA
Sbjct: 755 MGEPLDNYDAVRFAVSAMTDVRRFSLGASKISVSTVGVVPRIHQMVEDMPDVGLALSLHA 814
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-------KIFIEYIMLDGVNDEEQHA 112
P Q++R +I+P+ R++ L+++M A+ +Q+ Q+ I IEY+++D VN E+ A
Sbjct: 815 PNQELREEIVPSGRSWHLDRIMEAIDHFQETRQETSRRRRTHILIEYVLIDEVNSTEEVA 874
Query: 113 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 172
HQLG LL+ V+VN+IP+NP ++ S F +I+R SY +RT +R+++GQD
Sbjct: 875 HQLGHLLKDRDVLVNVIPYNPTDVPHDYKPPSRATTDRFNEIVR-SYGLRTIIRQELGQD 933
Query: 173 ISGACGQLVVN--LPDKISAKSTPPVTDIEDLCIR 205
++ ACGQLVV + +A + P V D+EDL R
Sbjct: 934 VNAACGQLVVRSQRAKEANAAAAPAVGDLEDLMSR 968
>gi|328773686|gb|EGF83723.1| hypothetical protein BATDEDRAFT_3639, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 368
Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 122/192 (63%), Gaps = 10/192 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY A++ AV M F +SP RI+VSTVG+V + D+P + LA+SLHA
Sbjct: 167 MGEPLDNYPAVLMAVNGMIDTSRFGLSPSRISVSTVGVVPRMRSLVRDMPDIGLALSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---------QKNSQQKIFIEYIMLDGVNDEEQ 110
P Q++R QI+P A+A+ +E++M A + N ++ + IEY+++ +ND E
Sbjct: 227 PTQELRTQIVPTAKAWNIERIMEAADVFIAQQNANVKSHNRRKHVLIEYVLIADINDSEV 286
Query: 111 HAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 170
AHQLGKLLE V++N+IP+NP ++ + + F I+R YN+ T +R+++G
Sbjct: 287 VAHQLGKLLEGRDVLLNVIPYNPTSVPYDYKPPLQETMKVFVDIVRRVYNVHTLLRQELG 346
Query: 171 QDISGACGQLVV 182
QDIS ACGQLV+
Sbjct: 347 QDISSACGQLVI 358
>gi|237840861|ref|XP_002369728.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211967392|gb|EEB02588.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
Length = 619
Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 17/197 (8%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHA
Sbjct: 269 MGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHA 328
Query: 60 PVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVND 107
P Q R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND
Sbjct: 329 PDQPTRLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVND 386
Query: 108 EEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165
+ AH LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ V
Sbjct: 387 TLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLV 446
Query: 166 RKQMGQDISGACGQLVV 182
R+ +GQDI ACGQLVV
Sbjct: 447 RQTLGQDIDSACGQLVV 463
>gi|66806177|ref|XP_636811.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
gi|60465214|gb|EAL63309.1| hypothetical protein DDB_G0288255 [Dictyostelium discoideum AX4]
Length = 407
Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 119/182 (65%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY + +A++I+T GL + +ITVST G+V I++ SD PG+ LA+SLH
Sbjct: 211 GEPFYNYRNVSKAIKIITDPNGLA--IGKSKITVSTSGVVPLIDRLGSDFPGIGLAISLH 268
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+ R +I+PA R +P+ +L+ A ++ KN +++I IEY+ML GVND EQ A+ L KL
Sbjct: 269 SANDKTRSEIVPANRQWPISELVEACIKFSKNCKERITIEYVMLKGVNDSEQDAYDLVKL 328
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++F VNLIPFNP SQ+++SS + +S F KIL I+ T+R+ G+DI ACG
Sbjct: 329 SKSFPSFVNLIPFNPWPG-SQYKSSSKETISQFSKIL-DDKGIKVTIRQPRGRDILAACG 386
Query: 179 QL 180
QL
Sbjct: 387 QL 388
>gi|221503269|gb|EEE28967.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 619
Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 17/197 (8%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHA
Sbjct: 269 MGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHA 328
Query: 60 PVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVND 107
P Q R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND
Sbjct: 329 PDQPTRLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVND 386
Query: 108 EEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165
+ AH LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ V
Sbjct: 387 TLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLV 446
Query: 166 RKQMGQDISGACGQLVV 182
R+ +GQDI ACGQLVV
Sbjct: 447 RQTLGQDIDSACGQLVV 463
>gi|95007443|emb|CAJ20664.1| hypothetical protein, conserved [Toxoplasma gondii RH]
Length = 641
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 17/197 (8%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHA
Sbjct: 291 MGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHA 350
Query: 60 PVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVND 107
P Q R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND
Sbjct: 351 PDQPTRLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVND 408
Query: 108 EEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165
+ AH LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ V
Sbjct: 409 TLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLV 468
Query: 166 RKQMGQDISGACGQLVV 182
R+ +GQDI ACGQLVV
Sbjct: 469 RQTLGQDIDSACGQLVV 485
>gi|221482944|gb|EEE21275.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 482
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 120/197 (60%), Gaps = 17/197 (8%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ++V ++R MT F + R+ +STVG+ H I + SDLP LA+SLHA
Sbjct: 132 MGEPLDNYNSVVSSIRFMTQPNKFAIGGHRVCISTVGLPHKIRQLASDLPACRLALSLHA 191
Query: 60 PVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVND 107
P Q R ++MP AA + LE+++ A E+ K QQK + +EYIM+ VND
Sbjct: 192 PDQPTRLKLMPRAAAGWKLERVLEATDEFVK--QQKRLNSTGMKNIGLLVEYIMIQDVND 249
Query: 108 EEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165
+ AH LG++L+ V+VNLIP+NP ++ S+ ++V F ILR Y I+ V
Sbjct: 250 TLEQAHALGRILQPRADAVIVNLIPYNPTDVPYDYKPSTQERVDDFLTILRKEYAIKVLV 309
Query: 166 RKQMGQDISGACGQLVV 182
R+ +GQDI ACGQLVV
Sbjct: 310 RQTLGQDIDSACGQLVV 326
>gi|338733713|ref|YP_004672186.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
gi|336483096|emb|CCB89695.1| ribosomal RNA large subunit methyltransferase N 2 [Simkania
negevensis Z]
Length = 362
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 127/192 (66%), Gaps = 4/192 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY +V+A+R++T L +SP+RITVSTVG+V I K + +NLA+SLHA
Sbjct: 169 MGEPLDNYDQVVKALRLLTHPLALNLSPRRITVSTVGVVEGIEKLMDEEISVNLALSLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q++R +I+P +R + LE ++ A+ Y K +++ + EY++L G+ND + A +LG+LL
Sbjct: 229 PNQNLRKKIVPYSRKYLLEDILKAVDLYSKKTKRDLTYEYVLLKGINDSRKEAQELGELL 288
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP+NP+ ++ + + + +F++IL + IR+T R G+DI+ ACGQ
Sbjct: 289 KGQHCCVNLIPYNPVDGLN-LKRPEKESIEAFREILDRA-GIRSTWRYTKGKDIAAACGQ 346
Query: 180 LVV-NLPDKISA 190
L + +P K A
Sbjct: 347 LALKKMPPKEEA 358
>gi|46446329|ref|YP_007694.1| hypothetical protein pc0695 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399970|emb|CAF23419.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 330
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 116/183 (63%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++V ++R+++ F +S +RITVSTVG+V I + + +NL +SLHA
Sbjct: 131 MGEPLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHA 190
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q +R +I+P AR +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L LL
Sbjct: 191 PNQHIRKKIIPYARKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAHLL 250
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ Q VNLIP+NPI + + + + F+ +L GS+ I T R G DI ACGQ
Sbjct: 251 KGKQCTVNLIPYNPIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAACGQ 308
Query: 180 LVV 182
L +
Sbjct: 309 LAL 311
>gi|205829720|sp|Q6MDD0.2|RLMN2_PARUW RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
2; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 2; AltName:
Full=23S rRNA m2A2503 methyltransferase 2; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
2; AltName: Full=tRNA m2A37 methyltransferase 2
Length = 358
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 116/183 (63%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++V ++R+++ F +S +RITVSTVG+V I + + +NL +SLHA
Sbjct: 159 MGEPLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q +R +I+P AR +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L LL
Sbjct: 219 PNQHIRKKIIPYARKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAHLL 278
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ Q VNLIP+NPI + + + + F+ +L GS+ I T R G DI ACGQ
Sbjct: 279 KGKQCTVNLIPYNPIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAACGQ 336
Query: 180 LVV 182
L +
Sbjct: 337 LAL 339
>gi|255080924|ref|XP_002504028.1| predicted protein [Micromonas sp. RCC299]
gi|226519295|gb|ACO65286.1| predicted protein [Micromonas sp. RCC299]
Length = 485
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 117/185 (63%), Gaps = 3/185 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNY A+V A+ MT F ++P R+TVSTVG+V + + D PG+ LA+SLHA
Sbjct: 192 MGEPLNNYDAVVGAIGPMTDPNAFALAPSRVTVSTVGVVPKMRRLVRDAPGVCLALSLHA 251
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKL 118
P Q +R +I+P A A+ L +++AL EY + + IEY +L GVND + A +LG+L
Sbjct: 252 PNQRLREKIVPTATAYKLPDILSALDEYLATGPKVRTMIEYCVLGGVNDTTECARELGEL 311
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISGAC 177
+ V+VNLIP+NP + + V + +L G +N TTVR +MGQDISGAC
Sbjct: 312 MRHRDVIVNLIPYNPTATPMGHSPPKMEDVRAMCAVLTGPEFNQFTTVRHEMGQDISGAC 371
Query: 178 GQLVV 182
GQL +
Sbjct: 372 GQLAL 376
>gi|307103703|gb|EFN51961.1| hypothetical protein CHLNCDRAFT_27272 [Chlorella variabilis]
Length = 384
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 116/185 (62%), Gaps = 21/185 (11%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNY A+ AVR+MT F + +++TVSTVG++ + + D+PG++LA+SLHA
Sbjct: 177 MGEPLNNYEAVRTAVRLMTDPSSFALRRRKVTVSTVGVIPRMLQMADDMPGVSLALSLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKL 118
P Q++R I Y + + Q++F+EY+ML +N + HAHQLG+L
Sbjct: 237 PTQELRQTI------------------YLERTGQRVFVEYVMLGPDINCTQAHAHQLGRL 278
Query: 119 LETFQVVVNLIPFNPIGSVS-QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ V+VNLIP+NPI S S F + ++F ILR Y + T+R + GQDISGAC
Sbjct: 279 LQGRNVLVNLIPWNPILSPSITFAAPEEGATAAFHSILRYQYGVNCTIRAEKGQDISGAC 338
Query: 178 GQLVV 182
GQLV+
Sbjct: 339 GQLVL 343
>gi|401396990|ref|XP_003879955.1| radical SAM enzyme, Cfr family, related [Neospora caninum
Liverpool]
gi|325114363|emb|CBZ49920.1| radical SAM enzyme, Cfr family, related [Neospora caninum
Liverpool]
Length = 512
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 123/209 (58%), Gaps = 17/209 (8%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY +V +VR MT F + + +STVG+ H I + SDLP LA+SLHA
Sbjct: 144 MGEPLDNYNNVVASVRFMTQPNKFAIGGHHVCISTVGLPHRIRQLASDLPTCRLALSLHA 203
Query: 60 PVQDVRCQIMP-AARAFPLEKLMNALKEYQKNSQQK-----------IFIEYIMLDGVND 107
P Q R ++MP AA + L+++++A E+ K QQK + +EYIM+ VND
Sbjct: 204 PDQPTRLKLMPRAAAGWKLDRVLDATDEFVK--QQKRVNSTAMKNIGLLVEYIMIQDVND 261
Query: 108 EEQHAHQLGKLLE--TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165
AH LG++L+ V+VNLIP+NP ++ S+ ++V F +ILR Y+I+ V
Sbjct: 262 TIDQAHALGRILQPRADAVIVNLIPYNPTEVPYDYKPSTPERVDEFLRILRQDYSIKVLV 321
Query: 166 RKQMGQDISGACGQLVVNLPDKISAKSTP 194
R+ +GQDI ACGQLVV S + P
Sbjct: 322 RQTLGQDIDSACGQLVVRAGKDKSGEKVP 350
>gi|20807945|ref|NP_623116.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
tengcongensis MB4]
gi|81590646|sp|Q8R9T4.1|RLMN_THETN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|20516515|gb|AAM24720.1| predicted Fe-S-cluster redox enzyme [Thermoanaerobacter
tengcongensis MB4]
Length = 342
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY +++ ++I+ ++ + IT+STVGIV I +F + +NL++SLHAP
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAP 216
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R ++MP RA+PLE+LM A + Y + + ++I EY ++DGVND+++HA+QL LL+
Sbjct: 217 NNELRNELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLK 276
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP N + + FR S+++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 277 GMLCHVNLIPINYVKEIG-FRKSNNEKVMMFKKIIENA-GITCTVRRELGSDIEAACGQL 334
>gi|303271119|ref|XP_003054921.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462895|gb|EEH60173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 327
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 114/183 (62%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNY A++ A+ +T F ++P R+TVSTVG+V + D PG+ LA+SLHA
Sbjct: 144 MGEPLNNYDAVIAALGPITDPKLFALAPSRVTVSTVGVVPRMKTLTRDAPGVALALSLHA 203
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKL 118
P Q +R I+P ARA+ L LM A+ +Y + + K +EY +L GVND +HA +LG+L
Sbjct: 204 PNQALRESIVPTARAYKLPALMEAMDKYLASGPKVKTMVEYCVLRGVNDGVEHARELGEL 263
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISGAC 177
L V+VN IP+NP + + V + +L G + TTVR +MGQDI+GAC
Sbjct: 264 LRGRDVIVNFIPYNPTDVPMGHAPPTKEAVKAMVDVLTGPEFGQFTTVRHEMGQDIAGAC 323
Query: 178 GQL 180
GQL
Sbjct: 324 GQL 326
>gi|254479559|ref|ZP_05092874.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
gi|214034497|gb|EEB75256.1| radical SAM enzyme, Cfr family [Carboxydibrachium pacificum DSM
12653]
Length = 336
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY +++ ++I+ ++ + IT+STVGIV I +F + +NL++SLHAP
Sbjct: 151 GEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAP 210
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R ++MP RA+PLE+LM A + Y + + ++I EY ++DGVND+++HA+QL LL+
Sbjct: 211 NNELRNELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLK 270
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP N + + FR S+++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 271 GMLCHVNLIPINYVKEIG-FRKSNNEKVMMFKKIIENA-GITCTVRRELGSDIEAACGQL 328
>gi|219129697|ref|XP_002185019.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403514|gb|EEC43466.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 387
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 123/206 (59%), Gaps = 5/206 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY+ +VEA R + + ++ R+TVSTVG+V I K ++LP ++LA+SLHA
Sbjct: 181 MGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRKLTAELPEVSLALSLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI---FIEYIMLDGVNDEEQHAHQLG 116
P Q R I+P A+ +PLE L++AL ++ QK IEY+ML+G + AHQLG
Sbjct: 241 PNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYVMLEGPTSTLECAHQLG 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL E +VVNLIP+N R S + + F++I+ SY T+RK MG DI A
Sbjct: 301 KLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIV-ASYGSFCTIRKTMGADIDSA 359
Query: 177 CGQLVVNLPDKISAKSTPPVTDIEDL 202
CGQL+ +K S D++D+
Sbjct: 360 CGQLITLRENKQSQNEHNAKGDVKDI 385
>gi|219113956|ref|XP_002176161.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402902|gb|EEC42868.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 471
Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 123/206 (59%), Gaps = 5/206 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY+ +VEA R + + ++ R+TVSTVG+V I K ++LP ++LA+SLHA
Sbjct: 181 MGEPLDNYSNVVEACRALIDRQRWNLAHGRVTVSTVGLVSQIRKLTAELPEVSLALSLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI---FIEYIMLDGVNDEEQHAHQLG 116
P Q R I+P A+ +PLE L++AL ++ QK IEY+ML+G + AHQLG
Sbjct: 241 PNQQDRQAIVPTAKHYPLEDLIDALDQHMMAYLQKRTNPMIEYVMLEGPTSTLECAHQLG 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL E +VVNLIP+N R S + + F++I+ SY T+RK MG DI A
Sbjct: 301 KLCENRHLVVNLIPYNQTNVRDVLRCPSREHMEEFREIVV-SYGSFCTIRKTMGADIDSA 359
Query: 177 CGQLVVNLPDKISAKSTPPVTDIEDL 202
CGQL+ +K S D++D+
Sbjct: 360 CGQLITLRENKQSQNEHNAKGDVKDI 385
>gi|110834724|ref|YP_693583.1| Fe-S-cluster redox protein [Alcanivorax borkumensis SK2]
gi|123050394|sp|Q0VND7.1|RLMN_ALCBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|110647835|emb|CAL17311.1| conserved Fe-S-cluster redox protein, putative [Alcanivorax
borkumensis SK2]
Length = 381
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+RIM L + + KRITVST G++ +N+ DL ++LAVSLHA
Sbjct: 168 MGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLD-VSLAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLG 116
P ++R Q++P R +PL+ LM A K Y KN + I +EY+ML VND+ +HA QL
Sbjct: 227 PNDELRNQLVPLNRKYPLKDLMAACKRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLV 286
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KLL V VNLIPFNP R+ +D + F K L + + TTVR G DI A
Sbjct: 287 KLLNGIPVKVNLIPFNPFPHAGYERSRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAA 344
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 345 CGQLVGQVKDR 355
>gi|254427443|ref|ZP_05041150.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
gi|196193612|gb|EDX88571.1| radical SAM enzyme, Cfr family [Alcanivorax sp. DG881]
Length = 380
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+RIM L + + KRITVST G++ +N+ DL ++LAVSLHA
Sbjct: 168 MGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLD-VSLAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLG 116
P ++R Q++P R +PL+ LM A K Y KN + I +EY+ML VND+ +HA QL
Sbjct: 227 PNDELRNQLVPLNRKYPLKDLMAACKSYSKNITHRHNTITMEYVMLRDVNDKPEHARQLV 286
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KLL V VNLIPFNP R+ +D + F K L + + TTVR G DI A
Sbjct: 287 KLLNGIPVKVNLIPFNPFPHAGYERSRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAA 344
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 345 CGQLVGQVKDR 355
>gi|406931239|gb|EKD66544.1| hypothetical protein ACD_49C00036G0007 [uncultured bacterium (gcode
4)]
Length = 345
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 4/185 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NY + ++ + F S +R+T+ST GI+ I +F D P +LA+SLHA
Sbjct: 159 MGEPFLNYPNVKLSLEVACKQQKFDFSSRRVTISTCGIISGIKQFWHDFPQTSLAISLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IMP +PL LM AL +Y + ++IF EYIM+ G+ND ++A QL KLL
Sbjct: 219 PNDELRSKIMPVNITYPLNFLMKALDDYTSLTNKRIFYEYIMIWGINDSLENAKQLAKLL 278
Query: 120 ETFQVVVNLIPFNPIGSV--SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
E VN IP+NP V S + +S ++ FQ+IL S+ I +T+R M DI AC
Sbjct: 279 EWKLAHVNFIPYNPGEWVNSSWYSATSKKRIQEFQQILEKSW-IPSTIRHTMWDDIDAAC 337
Query: 178 GQLVV 182
GQL +
Sbjct: 338 GQLAL 342
>gi|251770958|gb|EES51543.1| radical SAM family protein [Leptospirillum ferrodiazotrophum]
Length = 357
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 114/186 (61%), Gaps = 11/186 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT-----GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 55
MGEPL N AL+ A+R +T GL SP+RITVST G+V I+ G+ LA+
Sbjct: 162 MGEPLANLEALIPAIRSLTHPDGAGL----SPRRITVSTSGLVPRIDTLGEANTGVRLAI 217
Query: 56 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
SL AP +R +IMP R + +E+++ A + + ++ +I EY++L GVND A QL
Sbjct: 218 SLCAPDDALRREIMPVGRIYSIEEILAACRRFPLRNRDRITFEYVLLAGVNDSPLQARQL 277
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
G+LL F+ VNLIPFNP S + +D V++FQ++L G ++I TVRK MG D+
Sbjct: 278 GRLLAPFRSKVNLIPFNPFPG-SPYHRPTDSSVAAFQEVLAG-FHITATVRKSMGPDVLA 335
Query: 176 ACGQLV 181
ACGQL
Sbjct: 336 ACGQLA 341
>gi|333985584|ref|YP_004514794.1| ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
gi|333809625|gb|AEG02295.1| Ribosomal RNA large subunit methyltransferase N [Methylomonas
methanica MC09]
Length = 371
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 12/203 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +M F +S +R+T+ST G+V A+++ H D+ +++AVSLHA
Sbjct: 169 MGEPLLNFDNVVAAMNLMMDDFAFGLSKRRVTISTSGVVPAMHRLH-DVCDVSMAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P +PL +LM+A + Y KN +K I EY+MLDG+ND + A L KL
Sbjct: 228 PNDELRNQLVPINIKYPLTELMDACRAYAKNGPRKHITFEYVMLDGINDSMEDARTLVKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIPFNP SQ+R S + F+ IL + I TT+RK G DI ACG
Sbjct: 288 LKNVPSKVNLIPFNPFPQ-SQYRCSEMAAILKFRDILHNA-GIVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDKI-------SAKSTP 194
QLV + DK +A++TP
Sbjct: 346 QLVGQVQDKSRRHLKLQAARTTP 368
>gi|406927611|gb|EKD63617.1| hypothetical protein ACD_51C00246G0004 [uncultured bacterium]
Length = 340
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NNY ++ AVR + + + IT+ST G+V I K D +NLA+SLHA
Sbjct: 157 MGEPFNNYDNVMRAVRFLNDARGLNIGARNITLSTSGVVPGILKLMDDGLQVNLAISLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q++R +MP A+ + L++LM+A+ +Y + +++ EY+M+ GVND+ AHQLG L+
Sbjct: 217 PNQELRESMMPVAKKYGLDELMDAVTKYTNKTHRRVSYEYVMIAGVNDDLSLAHQLGNLI 276
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
E VNLIP+N + ++F+ S + K+ F KIL +Y + TT+R +GQDI ACGQ
Sbjct: 277 EGQLCHVNLIPYN-LTDGNKFKRSLNRKMDDFVKILE-TYRVPTTIRVSLGQDIDAACGQ 334
Query: 180 L 180
L
Sbjct: 335 L 335
>gi|308802175|ref|XP_003078401.1| unnamed protein product [Ostreococcus tauri]
gi|116056853|emb|CAL53142.1| unnamed protein product [Ostreococcus tauri]
Length = 368
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 4/186 (2%)
Query: 4 PLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQ 62
PLNNY +++EA+ +MT F +S +ITVSTVG++ + D PG LA+SLHAP Q
Sbjct: 110 PLNNYDSVIEAIGVMTDDKAFALSASKITVSTVGVIPRMRTLTRDAPGTCLALSLHAPTQ 169
Query: 63 DVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL-- 119
++R +I+P A A+ L+ LM L+EY + K IEY +L GVND+E A +LG+L
Sbjct: 170 ELRQKIVPTATAYKLDDLMRVLEEYLASGPKMKTMIEYCVLGGVNDDETCAEKLGELFRG 229
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ ++++NLIP NP + + + + V +IL Y + T R MG DI+GACGQ
Sbjct: 230 KEEKIILNLIPLNPTDTPAGHVPPTPEAVRKMMEILMKKYGLFVTRRHTMGDDIAGACGQ 289
Query: 180 LVVNLP 185
L + P
Sbjct: 290 LALKTP 295
>gi|410637360|ref|ZP_11347940.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
gi|410142983|dbj|GAC15145.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola lipolytica
E3]
Length = 378
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM L F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 171 MGEPLLNLKHVVPAMDIMLDDLGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P + +P+E+ + ++ Y S Q K+ +EY+ML+G+ND AHQL
Sbjct: 230 PTNDLRDEIVPVNKKYPIEEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHQLA 289
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP S + SS+ ++ F K+L Y I VRK G DI A
Sbjct: 290 KVLKETPCKINLIPFNPYPG-SPYTCSSNSRIDRFSKVLM-EYGITVVVRKTRGDDIDAA 347
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 348 CGQLVGDVVDR 358
>gi|297544781|ref|YP_003677083.1| Cfr family radical SAM protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842556|gb|ADH61072.1| radical SAM enzyme, Cfr family [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 342
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY +++ ++I+ + + IT+ST GI+ I +F + +NL++SLHAP
Sbjct: 157 GEPFDNYEEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHAP 216
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL LL+
Sbjct: 217 NDELRTQLMPINKAYPLEELMKACKYYIEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLQ 276
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 277 GMLCHVNLIPINYVKEIG-FKKAANEKVMMFKKIIENA-GISCTVRRELGSDIEAACGQL 334
>gi|51892489|ref|YP_075180.1| hypothetical protein STH1351 [Symbiobacterium thermophilum IAM
14863]
gi|81610561|sp|Q67PQ7.1|RLMN_SYMTH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|51856178|dbj|BAD40336.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 371
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 117/182 (64%), Gaps = 6/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEPL NY +++AVR++ GL + + IT+ST GIV + + + + LA+SLH
Sbjct: 182 GEPLENYDHVLKAVRLVHDPEGL--NIGYRHITISTSGIVPGMRRLAEEGLPITLALSLH 239
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP AR +PL +++ A +EY + + +++ EYI+++GVND + A QL +L
Sbjct: 240 APTDELRRQLMPVARIWPLAEVLAAAREYGEKTGRRVTYEYILIEGVNDGPEEARQLARL 299
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP NP+ Q+R ++V+ F++IL S I TTVR++MG +I ACG
Sbjct: 300 LKGALAHVNLIPMNPVAERPQYRRPGPERVNRFKEILE-SNGIATTVRREMGGEIDAACG 358
Query: 179 QL 180
QL
Sbjct: 359 QL 360
>gi|392950836|ref|ZP_10316391.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
gi|391859798|gb|EIT70326.1| hypothetical protein WQQ_04630 [Hydrocarboniphaga effusa AP103]
Length = 441
Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 115/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+ I+ F +S +R+TVST G+V +++ +D LAVSLHA
Sbjct: 234 MGEPLANYGQVMPAIGILQDDFGFGLSKRRVTVSTSGLVPFMDRLRADCD-TALAVSLHA 292
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFI--EYIMLDGVNDEEQHAHQLGK 117
P ++R +++P R +P+ +LM A + Y ++K+ I EY+MLDGVND +HA QL K
Sbjct: 293 PNDELRNRLVPINRKYPIAELMAACRRYTAGKERKMHIVYEYVMLDGVNDAPEHARQLAK 352
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIPFNP +Q++ S + + F ILR + I TT R+ G DI AC
Sbjct: 353 LLAGMPAKVNLIPFNPFPE-AQYKRSKPEAIKRFADILREKH-IMTTTRRTRGDDIDAAC 410
Query: 178 GQLVVNLPDK 187
GQLV + K
Sbjct: 411 GQLVGRVQSK 420
>gi|438002576|ref|YP_007272319.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
gi|432179370|emb|CCP26343.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
Length = 288
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 113/180 (62%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL NY L++ +RI+ L F +S +R+TVST GIV I + + + LAVSLHAP
Sbjct: 104 GEPLLNYDELIQFLRILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPITLAVSLHAP 163
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
D+R +MP +P+ +L++A K Y ++++I EYI++ +ND EQ A +L LL+
Sbjct: 164 NDDIRSSLMPINERYPILQLLDACKYYIMKTKRRITFEYILISDINDTEQCACELSNLLK 223
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NP+ +F+ S D ++ F++IL + I TVR++MG DI+ ACGQL
Sbjct: 224 DLLCHVNLIPLNPVEG-KKFKKSDDSRIRKFEQILLNN-GISATVRREMGSDINAACGQL 281
>gi|332799418|ref|YP_004460917.1| ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
gi|332697153|gb|AEE91610.1| Ribosomal RNA large subunit methyltransferase N [Tepidanaerobacter
acetatoxydans Re1]
Length = 343
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 113/180 (62%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL NY L++ +RI+ L F +S +R+TVST GIV I + + + LAVSLHAP
Sbjct: 159 GEPLLNYDELIQFLRILNSPLAFNISYRRLTVSTCGIVPKIIRLAEEGLPITLAVSLHAP 218
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
D+R +MP +P+ +L++A K Y ++++I EYI++ +ND EQ A +L LL+
Sbjct: 219 NDDIRSSLMPINERYPILQLLDACKYYIMKTKRRITFEYILISDINDTEQCACELSNLLK 278
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NP+ +F+ S D ++ F++IL + I TVR++MG DI+ ACGQL
Sbjct: 279 DLLCHVNLIPLNPVEG-KKFKKSDDSRIRKFEQILLNN-GISATVRREMGSDINAACGQL 336
>gi|289578505|ref|YP_003477132.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
gi|289528218|gb|ADD02570.1| radical SAM enzyme, Cfr family [Thermoanaerobacter italicus Ab9]
Length = 342
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY +++ ++I+ + + IT+ST GI+ I +F + +NL++SLHAP
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPYGLGIGSRHITISTCGIIPKIYQFADEKLQVNLSISLHAP 216
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL LL+
Sbjct: 217 NDELRTQLMPINKAYPLEELMKACKYYIEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLK 276
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 277 GMLCHVNLIPINYVKEIG-FKKAANEKVMMFKKIIENA-GISCTVRRELGSDIEAACGQL 334
>gi|392375105|ref|YP_003206938.1| pyruvate formate lyase activating enzyme 2 (yfgB) [Candidatus
Methylomirabilis oxyfera]
gi|258592798|emb|CBE69107.1| putative pyruvate formate lyase activating enzyme 2 (yfgB)
[Candidatus Methylomirabilis oxyfera]
Length = 372
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 124/192 (64%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY A V+A+ I++ GL + P+RIT+STVG+V I + G+NLAVSL
Sbjct: 178 MGEPLHNYDATVKALTILSHPMGLAY--PPRRITLSTVGLVPEIVRLGQSGLGVNLAVSL 235
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA ++R +++P R +PL++LM AL+ Y S++++ EY+++DGVND + A +L K
Sbjct: 236 HASTDELRDRLVPINRRYPLKELMVALRAYPLPSRRRLTFEYVLIDGVNDRSEDARELVK 295
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL + VNL+ N ++ FR S ++V FQ+ILR S +I T+R+ G DIS AC
Sbjct: 296 LLRGLRCKVNLLSLNEAPAIP-FRRPSQERVEMFQRILR-SADILATIRESRGLDISAAC 353
Query: 178 GQLVVNLPDKIS 189
G L+ PD+ S
Sbjct: 354 G-LLATEPDQKS 364
>gi|392940848|ref|ZP_10306492.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
gi|392292598|gb|EIW01042.1| 23S rRNA m2A2503 methyltransferase [Thermoanaerobacter siderophilus
SR4]
Length = 342
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 119/180 (66%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY +++ ++I+ + + IT+ST GIV I +F + +NL++SLHAP
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPYGLGIGGRHITISTCGIVPKIYQFADEKLQVNLSISLHAP 216
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL LL+
Sbjct: 217 NDELRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDLLK 276
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 277 GMLCHVNLIPINYVKEIG-FKKANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACGQL 334
>gi|329767014|ref|ZP_08258542.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
gi|328837739|gb|EGF87364.1| ribosomal RNA large subunit methyltransferase N [Gemella
haemolysans M341]
Length = 377
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + F + + ITVST GIV I F ++ +N AVSLHA
Sbjct: 178 IGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IMP RA+ ++KLM ALK YQ+ + ++I EY ++ VND+++HA +L +++
Sbjct: 238 PTNELRSKIMPVNRAYNIDKLMEALKYYQETTNRRITFEYGLMGKVNDQKEHAEKLSEII 297
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + RTS D + +F+KIL+ + + T+R+ G DI ACGQ
Sbjct: 298 KGLNCHVNLIPINYVPERNYVRTSKSD-IFAFEKILKKN-KVNVTIRRTQGDDIDAACGQ 355
Query: 180 L 180
L
Sbjct: 356 L 356
>gi|397641695|gb|EJK74803.1| hypothetical protein THAOC_03506 [Thalassiosira oceanica]
Length = 476
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 123/226 (54%), Gaps = 29/226 (12%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNY ++ A R M + ++ R+TVSTVG+V + DLP +NLA+SLHA
Sbjct: 202 MGEPLNNYQNVLAACRSMIDRRTWNLAHNRVTVSTVGVVPRMRDLTRDLPQVNLALSLHA 261
Query: 60 PVQDVRCQIMPAARAFPLEKL-------MNALKEYQKNSQ-----------------QKI 95
P Q++R +I+P+AR PL L M AL Q N Q ++
Sbjct: 262 PTQEMRERIVPSARGTPLASLVEAVDAHMMALVNTQDNPQGNGPLDQEKERQFASKKRRA 321
Query: 96 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 155
IEY+ML G + AHQLGKL E Q+V+NLIP+N + S++ + F+ I+
Sbjct: 322 MIEYVMLTGPTSTLEAAHQLGKLCEGRQLVINLIPYNKTDVKDKLSCPSEEHMMKFRSIV 381
Query: 156 RGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIED 201
Y ++R+ MG DISGACGQLVV ++ A V DIED
Sbjct: 382 -SQYGSFCSIRRTMGSDISGACGQLVV---EQQKATQNMKVADIED 423
>gi|326389541|ref|ZP_08211108.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
gi|325994546|gb|EGD52971.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus JW
200]
Length = 342
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 121/182 (66%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY +++ ++I+ GL + + IT+ST GIV I +F + +NL++SLH
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPHGLG--IGSRHITISTCGIVPKIYQFADEKLQVNLSISLH 214
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL L
Sbjct: 215 APNDELRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACG
Sbjct: 275 LKGMLCHVNLIPINYVKEIG-FKKANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACG 332
Query: 179 QL 180
QL
Sbjct: 333 QL 334
>gi|319790295|ref|YP_004151928.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
gi|317114797|gb|ADU97287.1| radical SAM enzyme, Cfr family [Thermovibrio ammonificans HB-1]
Length = 345
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 116/181 (64%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ + +AV IMT +S +++TVSTVGIV I++ ++ + LAVSLHA
Sbjct: 158 MGEPLLNFDNVKKAVEIMTHRDMLDLSTRKVTVSTVGIVPGIDRMAKEMNKVKLAVSLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+VR ++P R +P+ ++M AL+ Y ++ ++I IEY+ML GVND + A +L KL+
Sbjct: 218 TTDEVRNMLVPLNRKYPIGEIMAALRRYPADNNRRIMIEYVMLKGVNDSLEDARRLVKLV 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ V VNLIPFNP ++F + +++ +FQK+L +NI +R GQDIS ACG
Sbjct: 278 KGIPVKVNLIPFNPYPG-AEFEPTPREQIEAFQKVL-WDHNIAAFIRDSRGQDISAACGM 335
Query: 180 L 180
L
Sbjct: 336 L 336
>gi|317495216|ref|ZP_07953586.1| cfr family radical SAM enzyme [Gemella morbillorum M424]
gi|316914638|gb|EFV36114.1| cfr family radical SAM enzyme [Gemella morbillorum M424]
Length = 377
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ ++I+ + F + + ITVST GIV I F ++ +N AVSLHA
Sbjct: 178 IGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPKIYDFANEKIQINFAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IMP RA+ ++KLM ALK YQK + ++I EY ++ VND+ +HA +L +++
Sbjct: 238 PTNELRSKIMPVNRAYNIDKLMEALKYYQKTTNRRITFEYGLMGKVNDQREHAEKLSEII 297
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + RTS +D + +F+K+L+ + + T+R+ G DI ACGQ
Sbjct: 298 KDLNCHVNLIPINYVPERNYVRTSKND-IFAFEKVLKKN-RVNVTIRRTQGDDIDAACGQ 355
Query: 180 L 180
L
Sbjct: 356 L 356
>gi|116751471|ref|YP_848158.1| radical SAM domain-containing protein [Syntrophobacter fumaroxidans
MPOB]
gi|205829911|sp|A0LQM1.1|RLMN_SYNFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|116700535|gb|ABK19723.1| Radical SAM domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 342
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 10/187 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N +++ A+R++ G+ F S +RIT+ST G+V + + + P +NLAVSL
Sbjct: 160 MGEPLANLDSVLRAIRVIAEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLAVSL 216
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA ++R ++MP R +PLE LM A +EY +++I EYI+LDG+ND+ + A QL K
Sbjct: 217 HAAENELRAELMPVNRTYPLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQLVK 276
Query: 118 LLETFQVVVNLIPFNPI-GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL + VNL+PFNP GSV FR S+ +V +FQ+ L+ + I T VR+ G +I A
Sbjct: 277 LLHGIRAKVNLMPFNPHPGSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEIGAA 333
Query: 177 CGQLVVN 183
CGQLV
Sbjct: 334 CGQLVAE 340
>gi|350563236|ref|ZP_08932058.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
gi|349779100|gb|EGZ33447.1| radical SAM enzyme, Cfr family [Thioalkalimicrobium aerophilum AL3]
Length = 378
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 117/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + ++ M + +S +R+T+ST G+V AI+K ++ ++LA+SLHA
Sbjct: 177 MGEPLLNVTHVFPVAKLLMDDNAYGLSKRRVTISTAGVVPAIDKLKDEV-DVSLAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P +R Q++P + +PLE LM AL Y + K I +EY+MLD VNDEE+HAHQL +
Sbjct: 236 PNNALRDQLVPINKKYPLEVLMPALHRYVADGHAKKHITVEYVMLDQVNDEEEHAHQLVE 295
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIPFNP + R SS+++V FQ++L + I T+RK G DI AC
Sbjct: 296 LLGNLICKVNLIPFNPFPNTPYLR-SSNNRVHRFQRVLHEA-GINCTIRKTRGDDIDAAC 353
Query: 178 GQLVVNLPDK 187
GQL + D+
Sbjct: 354 GQLAGKVKDR 363
>gi|302878623|ref|YP_003847187.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
gi|302581412|gb|ADL55423.1| radical SAM enzyme, Cfr family [Gallionella capsiferriformans ES-2]
Length = 363
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 122/198 (61%), Gaps = 5/198 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ V A+R+M + +S +R+TVST GIV A+++ + P + LAVSLHA
Sbjct: 162 MGEPLLNFDNTVSALRLMLDDQAYGLSRRRVTVSTSGIVPAMDRLREECP-VALAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL++L+ A + Y +K + I EY+MLDGVND QHAH+L +L
Sbjct: 221 PNDALRDKLVPVNQKYPLKELLGACQRYLEKAPRDFITFEYVMLDGVNDTVQHAHELVRL 280
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP +S ++ S D + F+ +L + +I TT RK G DI+ ACG
Sbjct: 281 VKDTPCKFNLIPFNPF-PLSPYKRSRPDAIQRFRDVLMQA-DIITTTRKTRGDDIAAACG 338
Query: 179 QLVVNLPDKISAKSTPPV 196
QL + DK T PV
Sbjct: 339 QLAGQVLDKTRRTGTRPV 356
>gi|345017808|ref|YP_004820161.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344033151|gb|AEM78877.1| Ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 342
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 121/182 (66%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY +++ ++I+ GL + + IT+ST GIV I +F + +NL++SLH
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPQGLG--IGGRHITISTCGIVPKIYQFADEKLQVNLSISLH 214
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP +A+PLE+LM A K Y + ++++I EY +++GVND+++HA+QL L
Sbjct: 215 APNDELRTQLMPINKAYPLEELMKACKYYVEKTRRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + + F+ ++++KV F+KI+ + I TVR+++G DI ACG
Sbjct: 275 LKGMLCHVNLIPINYVKEIG-FKKANNEKVMMFKKIIEDA-GISCTVRRELGSDIEAACG 332
Query: 179 QL 180
QL
Sbjct: 333 QL 334
>gi|241890016|ref|ZP_04777314.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
gi|241863638|gb|EER68022.1| radical SAM enzyme, Cfr family [Gemella haemolysans ATCC 10379]
Length = 377
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + F + + ITVST GIV I F ++ +N AVSLHA
Sbjct: 178 IGEPFENYDEMMDFIRIVNSDESFNIGARHITVSTSGIVPKIYDFANEKVQINFAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IMP RA+ ++KLM ALK YQ+ + ++I EY ++ VND+++HA +L +++
Sbjct: 238 PTNELRSKIMPVNRAYNIDKLMEALKYYQETTNRRITFEYGLMGKVNDQKEHAEKLSEII 297
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + RTS D + +F+K+L+ + + T+R+ G DI ACGQ
Sbjct: 298 KGLNCHVNLIPINYVPERNYVRTSKSD-IFAFEKVLKKN-KVNVTIRRTQGDDIDAACGQ 355
Query: 180 L 180
L
Sbjct: 356 L 356
>gi|373856266|ref|ZP_09599011.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
gi|372454103|gb|EHP27569.1| radical SAM enzyme, Cfr family [Bacillus sp. 1NLA3E]
Length = 348
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +N+ LV ++I+ +++ + ITVST G+ I F +NLA+SLHA
Sbjct: 163 IGEPFDNFENLVNFLKIIIDQKGLEIAARHITVSTSGLAEKIYDFTDTKLPVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IM RA+PLE+LM A+ Y +N+ ++I EYI+L VND + A QL L+
Sbjct: 223 PNNELRSRIMKINRAYPLEELMKAVDYYLENTNRRITFEYILLKDVNDHREEAQQLANLI 282
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
E + VNLIP+NP+G SQ++ S ++ V +F L+ + + +R++ G DI ACGQ
Sbjct: 283 ENKKSYVNLIPYNPVGEHSQYQRSDEESVLAFYDTLKKN-GVNCVIRQEHGTDIDAACGQ 341
Query: 180 L 180
L
Sbjct: 342 L 342
>gi|404328938|ref|ZP_10969386.1| ribosomal RNA large subunit methyltransferase N [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 357
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +RI+ TGL + + ITVST GIV I +F +NLAVSL
Sbjct: 163 IGEPFDNYENVMDFLRIINDQTGLA--IGARHITVSTSGIVPKIYEFADIDWQVNLAVSL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RA+P+EKLM+A+ Y + + ++I EYIML VND ++ A QL K
Sbjct: 221 HAPNNELRSRIMKINRAYPIEKLMDAVDYYLQKTNRRITFEYIMLKDVNDHKEEAIQLAK 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LLE + VNLIP+NP+ S+++ S + V F + L+ I VRK+ G DI
Sbjct: 281 LLENKRHLAYVNLIPYNPVAEHSEYQRSEKNTVGVFYETLK-RRGINAVVRKEFGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|407695029|ref|YP_006819817.1| ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
gi|407252367|gb|AFT69474.1| Ribosomal RNA large subunit methyltransferase N [Alcanivorax
dieselolei B5]
Length = 380
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ NY A++ A+RIM L + + KRIT+ST G+V I++ DL + LAVSLHA
Sbjct: 168 MGEPMLNYDAVLTAMRIMKDDLGYGIGKKRITLSTSGVVPKIDQLSRDLD-VALAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLG 116
P ++R +++P R +PL +LM A K Y N + I +EY+ML VND+ +HA QL
Sbjct: 227 PNDELRNELVPLNRKYPLAELMAACKRYSDNITHRHNTITMEYVMLRDVNDKPEHARQLV 286
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KLL V VNLIPFNP R+ D + F K L + + TTVR G DI A
Sbjct: 287 KLLNGIPVKVNLIPFNPFPHAGYERSRKKD-ILEFHKFL-NDHGLLTTVRTTRGDDIDAA 344
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 345 CGQLVGTVQDR 355
>gi|343085190|ref|YP_004774485.1| ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
gi|342353724|gb|AEL26254.1| Ribosomal RNA large subunit methyltransferase N [Cyclobacterium
marinum DSM 745]
Length = 349
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+ +I + +SPKRIT+STVGI I K D NLA+SLH+
Sbjct: 165 MGEPLLNYQNVLSAIEKICSPEGLGISPKRITLSTVGIGKMIRKLADDEVKFNLALSLHS 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP +E L ALK + +++K+ EY++ DG+ND+E+HA L K
Sbjct: 225 AINETRTRLMPINETNTVEDLAMALKYWYSKTKRKVTYEYVIWDGINDDEKHARALAKFC 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR +S DK+ + IL GS I VRK GQDI ACGQ
Sbjct: 285 KHIPSKVNIIQYNPIDE-GEFRQASQDKIDLYLSILEGS-GIIANVRKSRGQDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|329770490|ref|ZP_08261868.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
gi|328836239|gb|EGF85908.1| ribosomal RNA large subunit methyltransferase N [Gemella sanguinis
M325]
Length = 377
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 116/181 (64%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ ++I+ + F + + ITVST GIV I F ++ +N AVSLHA
Sbjct: 178 IGEPFENYDEMMDFIKIVNSDESFNIGARHITVSTSGIVPRIYDFANENIQINFAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IMP RA+ ++KLM AL+ YQK + ++I EY ++ VND+++HA +L +++
Sbjct: 238 PTNELRSKIMPVNRAYNIDKLMEALRYYQKTTNRRITFEYGLMGKVNDQKEHAEKLSEII 297
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + RTS +D + +F+KIL+ + + T+R+ G DI ACGQ
Sbjct: 298 KGINCHVNLIPINYVPERNYVRTSKND-IFAFEKILKKN-KVNVTIRRTQGDDIDAACGQ 355
Query: 180 L 180
L
Sbjct: 356 L 356
>gi|157144549|ref|YP_001451868.1| ribosomal RNA large subunit methyltransferase N [Citrobacter koseri
ATCC BAA-895]
gi|205829699|sp|A8AD69.1|RLMN_CITK8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157081754|gb|ABV11432.1| hypothetical protein CKO_00268 [Citrobacter koseri ATCC BAA-895]
Length = 388
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P R + +E ++A++ Y + S Q ++ IEY+MLD +ND +HAHQL
Sbjct: 241 PNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|431741675|ref|ZP_19530578.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
gi|430601407|gb|ELB39013.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2039]
Length = 355
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 115/194 (59%), Gaps = 4/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ S V F +L+ + + +RK+ G DI+ AC
Sbjct: 283 KDKKKLAYVNLIPYNPVSERDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDINAAC 341
Query: 178 GQLVVNLPDKISAK 191
GQL K +AK
Sbjct: 342 GQLRSKQMKKTAAK 355
>gi|227112689|ref|ZP_03826345.1| hypothetical protein PcarbP_06994 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 418
Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 212 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 270
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 271 PTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 330
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 331 ECLKNTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 388
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 389 CGQLAGEVVDR 399
>gi|410031405|ref|ZP_11281235.1| ribosomal RNA large subunit methyltransferase N [Marinilabilia sp.
AK2]
Length = 353
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++EA+ +I ++P+RIT+STVGI I K D NLA+SLH+
Sbjct: 165 MGEPLLNYNNVIEAIDKITAPEGLGMAPRRITLSTVGIPKMIKKMADDEVKFNLAISLHS 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP PLE L ALK + + +++K+ EY++ DGVND+E+HA L K
Sbjct: 225 AINETRSRLMPINEVNPLEDLAEALKYWYQKTKRKVTYEYVIWDGVNDDEKHAKALAKFC 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR +S + V + +IL I VRK GQDI ACGQ
Sbjct: 285 KIIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILE-EQGIIAKVRKSRGQDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|241764492|ref|ZP_04762513.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
gi|241366076|gb|EER60673.1| radical SAM enzyme, Cfr family [Acidovorax delafieldii 2AN]
Length = 373
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYTALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +PLE+L++A + Y +++ + I EY MLDGVND+ +HA QL L
Sbjct: 223 PNDALRDNLVPLNRKYPLEELLDACRRYLEHAPRDFITFEYCMLDGVNDQVEHARQLIAL 282
Query: 119 LETFQVV-----VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ Q V NLIPFNP + R+ S +V+ F K+L + I TTVRK G DI
Sbjct: 283 VNPAQGVPIRCKFNLIPFNPFPASGLLRSPS-AQVAMFAKVLSDA-GIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 341 DAACGQLAGDVKDRTRA 357
>gi|227328680|ref|ZP_03832704.1| hypothetical protein PcarcW_15616 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 418
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 212 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 270
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 271 PTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 330
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 331 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 388
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 389 CGQLAGEVVDR 399
>gi|430840529|ref|ZP_19458453.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
gi|430495016|gb|ELA71232.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1007]
Length = 355
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 115/194 (59%), Gaps = 4/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ S V F +L+ + + +RK+ G DI+ AC
Sbjct: 283 KDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDINAAC 341
Query: 178 GQLVVNLPDKISAK 191
GQL K +AK
Sbjct: 342 GQLRSKQMKKTAAK 355
>gi|403059493|ref|YP_006647710.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402806819|gb|AFR04457.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 418
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 212 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 270
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 271 PTDDIRNEIMPINKKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 330
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 331 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 388
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 389 CGQLAGEVVDR 399
>gi|167037727|ref|YP_001665305.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040388|ref|YP_001663373.1| ribosomal RNA large subunit methyltransferase N [Thermoanaerobacter
sp. X514]
gi|256752274|ref|ZP_05493137.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914472|ref|ZP_07131788.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307724292|ref|YP_003904043.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|320116142|ref|YP_004186301.1| Cfr family radical SAM protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|205829918|sp|B0KA06.1|RLMN_THEP3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829919|sp|B0K1Y9.1|RLMN_THEPX RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|166854628|gb|ABY93037.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X514]
gi|166856561|gb|ABY94969.1| radical SAM enzyme, Cfr family [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748842|gb|EEU61883.1| radical SAM enzyme, Cfr family [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889407|gb|EFK84553.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X561]
gi|307581353|gb|ADN54752.1| radical SAM enzyme, Cfr family [Thermoanaerobacter sp. X513]
gi|319929233|gb|ADV79918.1| radical SAM enzyme, Cfr family [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 342
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 120/182 (65%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY +++ ++I+ GL + + IT+ST GIV I +F + +NL++SLH
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPHGLG--IGSRHITISTCGIVPKIYQFADEKLQVNLSISLH 214
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP +A+PLE+LM A K Y ++++I EY +++GVND+++HA+QL L
Sbjct: 215 APNDELRTQLMPINKAYPLEELMKACKYYVDKTRRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ +NLIP N + + F+ ++++KV F++I+ + I TVR+++G DI ACG
Sbjct: 275 LKGMLCHINLIPINYVREIG-FKKANNEKVMMFKRIIEDA-GISCTVRRELGSDIEAACG 332
Query: 179 QL 180
QL
Sbjct: 333 QL 334
>gi|357051317|ref|ZP_09112511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
gi|355380139|gb|EHG27284.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
saccharolyticus 30_1]
Length = 354
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ ++I+ GL + + ITVST G+ H I +F + +NLA+SL
Sbjct: 162 IGEPFDNYENVMQFLQIINDPKGLA--IGARHITVSTSGLAHKIKEFAENGLQVNLAISL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR +M R+FP+EKLM A+ Y + + ++I EYIMLD VND +HA QL +
Sbjct: 220 HAPNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTNRRITFEYIMLDHVNDRPEHARQLVE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S + V +F IL+ + I +RK+ G DI
Sbjct: 280 LLKNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKN-GINCVIRKEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|325294881|ref|YP_004281395.1| ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065329|gb|ADY73336.1| Ribosomal RNA large subunit methyltransferase N [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 345
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 115/181 (63%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP N+ + +AV IMT +S ++IT+STVG+V I++ ++ + LA+SLHA
Sbjct: 158 MGEPFLNFENVKKAVEIMTDKNMLDLSTRKITISTVGVVPGIDRMAKEMNKVKLAISLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+VR +I+P R +P+ ++M AL+ Y ++ ++I IEY+ML+GVND + A +L KL+
Sbjct: 218 TTDEVREKIVPLNRKYPISEIMAALRRYPADNIRRIMIEYVMLEGVNDSVEDAKRLVKLV 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ V VNLIPFN + F+ SS ++ FQK+L +NI +R GQDIS ACG
Sbjct: 278 KGIPVKVNLIPFNSYPG-APFKPSSKEQTEKFQKVL-WDHNIAAFIRDSRGQDISAACGM 335
Query: 180 L 180
L
Sbjct: 336 L 336
>gi|227552455|ref|ZP_03982504.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257888305|ref|ZP_05667958.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257896805|ref|ZP_05676458.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257899742|ref|ZP_05679395.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|293378566|ref|ZP_06624729.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|293573136|ref|ZP_06684073.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|424764142|ref|ZP_18191598.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|425055517|ref|ZP_18458991.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|431040136|ref|ZP_19492643.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|431064364|ref|ZP_19493711.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|431123802|ref|ZP_19498515.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|431593526|ref|ZP_19521855.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|431738470|ref|ZP_19527413.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|431751095|ref|ZP_19539788.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|431758108|ref|ZP_19546736.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|431763569|ref|ZP_19552118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
gi|227178412|gb|EEI59384.1| Fe-S-cluster redox enzyme [Enterococcus faecium TX1330]
gi|257824359|gb|EEV51291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,141,733]
gi|257833370|gb|EEV59791.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com12]
gi|257837654|gb|EEV62728.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Com15]
gi|291606774|gb|EFF36159.1| radical SAM enzyme, Cfr family [Enterococcus faecium E980]
gi|292642895|gb|EFF61042.1| radical SAM enzyme, Cfr family [Enterococcus faecium PC4.1]
gi|402421174|gb|EJV53436.1| 23S rRNA methyltransferase [Enterococcus faecium TX1337RF]
gi|403033825|gb|EJY45310.1| 23S rRNA methyltransferase [Enterococcus faecium 505]
gi|430561988|gb|ELB01241.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1590]
gi|430567434|gb|ELB06518.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1613]
gi|430569005|gb|ELB08035.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1604]
gi|430591403|gb|ELB29441.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1861]
gi|430597198|gb|ELB35001.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1972]
gi|430615912|gb|ELB52844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2620]
gi|430617771|gb|ELB54635.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3083]
gi|430621942|gb|ELB58683.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3548]
Length = 355
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 114/194 (58%), Gaps = 4/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ S V F +L+ + + +RK+ G DI AC
Sbjct: 283 KDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAAC 341
Query: 178 GQLVVNLPDKISAK 191
GQL K +AK
Sbjct: 342 GQLRSKQMKKTAAK 355
>gi|379704816|ref|YP_005203275.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Streptococcus infantarius
subsp. infantarius CJ18]
gi|374681515|gb|AEZ61804.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 366
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ VR + GL + + IT+ST G+ H I +F + +NLAVSL
Sbjct: 169 IGEPFDNYDNVLRFVRTINNDNGLA--IGARHITISTSGLAHKIREFAHESLQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFTAIEYYIETTNRRVTFEYIMLNDVNDSPENAQELAD 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+R SS + V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 346 ACGQLRSN 353
>gi|171778734|ref|ZP_02919830.1| hypothetical protein STRINF_00682 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282691|gb|EDT48115.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
Length = 366
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ VR + GL + + IT+ST G+ H I +F + +NLAVSL
Sbjct: 169 IGEPFDNYDNVLRFVRTINNDNGLA--IGARHITISTSGLAHKIREFAHESLQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFTAIEYYIETTNRRVTFEYIMLNDVNDSPENAQELAD 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+R SS + V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYRRSSKEHVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 346 ACGQLRSN 353
>gi|395003902|ref|ZP_10387999.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
gi|394318186|gb|EJE54646.1| 23S rRNA methyltransferase [Acidovorax sp. CF316]
Length = 396
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 121/197 (61%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 187 MGEPLQNYSALVPALRVMLDDHAYGLSRRRVTVSTSGVVPMIDRLAQDCP-VALAVSLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+E+L+ A Y +++ + I EY MLDGVND+ +HA QL +L
Sbjct: 246 PNDPLRDNLVPLNRKYPIEELLAACNRYLEHAPRDFITFEYCMLDGVNDQIEHARQLIEL 305
Query: 119 L-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ E + NLIPFNP + R SS +V +F K+L + I TTVRK G DI
Sbjct: 306 VKPARGEGVRCKFNLIPFNPFPASGLLR-SSHAQVQAFGKLLSDA-GIVTTVRKTRGDDI 363
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 364 DAACGQLAGDVKDRTKA 380
>gi|257870949|ref|ZP_05650602.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
gi|257805113|gb|EEV33935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
gallinarum EG2]
Length = 360
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ ++I+ GL + + ITVST G+ H I +F + +NLA+SL
Sbjct: 168 IGEPFDNYENVMQFLQIINDPKGLA--IGARHITVSTSGLAHKIKEFAENGLQVNLAISL 225
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR +M R+FP+EKLM A+ Y + + ++I EYIMLD VND +HA QL +
Sbjct: 226 HAPNNEVRTSMMRINRSFPIEKLMEAIDYYLEKTNRRITFEYIMLDHVNDRPEHARQLVE 285
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S + V +F IL+ + I +RK+ G DI
Sbjct: 286 LLKNKRKLSYVNLIPYNPVSEHDQYARSKKEDVLAFYDILKKN-GINCVIRKEHGTDIDA 344
Query: 176 ACGQL 180
ACGQL
Sbjct: 345 ACGQL 349
>gi|283832102|ref|ZP_06351843.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
gi|291071728|gb|EFE09837.1| radical SAM enzyme, Cfr family [Citrobacter youngae ATCC 29220]
Length = 388
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L G Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLMG-YGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|121607087|ref|YP_994894.1| radical SAM protein [Verminephrobacter eiseniae EF01-2]
gi|205829923|sp|A1WE19.1|RLMN_VEREI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121551727|gb|ABM55876.1| radical SAM enzyme, Cfr family [Verminephrobacter eiseniae EF01-2]
Length = 391
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 121/191 (63%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N AAL+ A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 165 MGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCP-VALAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P R +P+++L+ A K Y ++ + I EY MLDGVND+ HA QL +L
Sbjct: 224 PNDALRDQLVPLNRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLVEL 283
Query: 119 L--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ + NLIPFNP + R S+ D++ +F ++L G+ I TTVRK G DI+ A
Sbjct: 284 VGRAAIRCKFNLIPFNPFPASGLLR-SAHDQILAFAQVL-GAAGIVTTVRKTRGDDIAAA 341
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 342 CGQLAGDVRDR 352
>gi|404448301|ref|ZP_11013294.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
gi|403765922|gb|EJZ26797.1| ribosomal RNA large subunit methyltransferase N [Indibacter
alkaliphilus LW1]
Length = 352
Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +++A+ +I + ++P+RIT+STVGI I K D NLAVSLH+
Sbjct: 164 MGEPLLNYNNVIDAIDKITSPEGLGMAPRRITLSTVGIPKMIKKMADDEVRFNLAVSLHS 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP PLE L ALK + + +++K+ EY++ DG+ND+E+HA L K
Sbjct: 224 AIDETRSRLMPINDVNPLEDLAEALKYWYQKTKRKVTYEYVIWDGINDDERHAKALAKFC 283
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR +S + V + +IL S I VRK GQDI ACGQ
Sbjct: 284 KIIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILE-SNGIIAKVRKSRGQDIDAACGQ 341
Query: 180 L 180
L
Sbjct: 342 L 342
>gi|440750150|ref|ZP_20929394.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
gi|436481191|gb|ELP37372.1| Ribosomal RNA large subunit methyltransferase N [Mariniradius
saccharolyticus AK6]
Length = 355
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYA +VEA+ +I + ++ +RIT+STVGI I K D NLA+SLH+
Sbjct: 165 MGEPLLNYANVVEAIDKITSPEGLGMAARRITLSTVGIPKMIKKMADDEVKFNLAISLHS 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP + PLE L ALK + + +++K+ EY++ DG+ND+E HA L K
Sbjct: 225 AINETRSRLMPINDSNPLEDLAEALKYWYQKTKRKVTYEYVIWDGINDDESHAKALAKFC 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR +S + V + +IL + I VRK GQDI ACGQ
Sbjct: 285 KIIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILEQN-GIVAKVRKSRGQDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|262374935|ref|ZP_06068169.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|262309948|gb|EEY91077.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
lwoffii SH145]
gi|407007098|gb|EKE22852.1| hypothetical protein ACD_6C00703G0004 [uncultured bacterium]
Length = 411
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 123/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++RIM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLNSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQMVKDI-DVALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PLE+L+ A + Y ++S++ + IEY+MLDGVND +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLEQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDHPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|261820570|ref|YP_003258676.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae WPP163]
gi|261604583|gb|ACX87069.1| radical SAM enzyme, Cfr family [Pectobacterium wasabiae WPP163]
Length = 400
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 194 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 252
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 253 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 312
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 313 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 370
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 371 CGQLAGEVVDR 381
>gi|385870746|gb|AFI89266.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium sp.
SCC3193]
Length = 400
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 194 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 252
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 253 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 312
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 313 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 370
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 371 CGQLAGEVVDR 381
>gi|50122145|ref|YP_051312.1| ribosomal RNA large subunit methyltransferase N [Pectobacterium
atrosepticum SCRI1043]
gi|81644326|sp|Q6D273.1|RLMN_ERWCT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49612671|emb|CAG76121.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 398
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 251 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVVDR 379
>gi|421080362|ref|ZP_15541296.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
gi|401705215|gb|EJS95404.1| Ribosomal RNA large subunit methyltransferase N [Pectobacterium
wasabiae CFBP 3304]
Length = 400
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 194 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 252
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 253 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 312
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 313 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 370
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 371 CGQLAGEVVDR 381
>gi|114320405|ref|YP_742088.1| radical SAM protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122941195|sp|Q0A989.1|RLMN_ALHEH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|114226799|gb|ABI56598.1| 23S rRNA m(2)A-2503 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 360
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A++ AVR+MT + +S +++T+ST G+V + + ++LAVSLHA
Sbjct: 158 MGEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQ-TDVSLAVSLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R PLE+L+ A Y + ++I EY+MLDGVND++ HAH+L +L
Sbjct: 217 PNNALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARL 276
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP +++R S ++ F +IL+ S+ + T R GQDI GACG
Sbjct: 277 LGDIPSKVNLIPFNPFPG-ARYRCSPRGRILRFVRILQ-SHGLTATTRVTRGQDIDGACG 334
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 335 QLVGKVQDR 343
>gi|253689386|ref|YP_003018576.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755964|gb|ACT14040.1| radical SAM enzyme, Cfr family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 419
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 213 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 271
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 272 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 331
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 332 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 389
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 390 CGQLAGEVVDR 400
>gi|424867267|ref|ZP_18291075.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'C75']
gi|387222302|gb|EIJ76760.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'C75']
Length = 379
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 118/194 (60%), Gaps = 3/194 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ LV ++ ++T F +S +RITVST G+ I + +NLAVSL A
Sbjct: 177 MGEPLANFDHLVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +++R +MP +R P+ +++A + Y ++Q+I EY++L GVND E A +L +LL
Sbjct: 237 PTEELRENLMPISRHHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLL 296
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F+ VNLIPFNP S + D+V FQ+IL+ + + T+R G+DI GACGQ
Sbjct: 297 APFRSKVNLIPFNPYPG-SPYHRPDKDRVRRFQEILQ-AKGVTATLRTTRGEDILGACGQ 354
Query: 180 LVVNLPDKISAKST 193
L ++ ++ +S+
Sbjct: 355 LALSPSPALTMESS 368
>gi|300920672|ref|ZP_07137083.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|419921561|ref|ZP_14439613.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|432534838|ref|ZP_19771810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
gi|300412353|gb|EFJ95663.1| radical SAM enzyme, Cfr family [Escherichia coli MS 115-1]
gi|388397512|gb|EIL58490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-15]
gi|431059593|gb|ELD68946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE234]
Length = 384
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND+ +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDDTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|389704826|ref|ZP_10185930.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
gi|388611070|gb|EIM40179.1| putative Fe-S-cluster redox enzyme [Acinetobacter sp. HA]
Length = 411
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 123/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++RIM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DVALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PLE L+ A + Y +++++ + IEY+MLDGVND+ +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLEHLIAACQRYITKDGNESARKHVTIEYVMLDGVNDKPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|348590089|ref|YP_004874551.1| ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
gi|347973993|gb|AEP36528.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
asinigenitalis MCE3]
Length = 380
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A++++ + +S +R+TVST G++ ++K D P + LAVSLHA
Sbjct: 175 MGEPLLNYDQVLPAIKLLIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P + +PL +LM+A Y + + I EYIMLDGVND + HA QL +
Sbjct: 234 PNDELRDQLIPLNKKYPLRELMDACNRYIDFAPRDFITFEYIMLDGVNDTDAHAKQLIDI 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S R SS ++V +F IL G+ I T RK G DI ACG
Sbjct: 294 CREVKSKVNLIPFNPFPE-SGLRRSSHERVRAFSAILNGA-GIVATTRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL ++ DK
Sbjct: 352 QLAGDIKDK 360
>gi|333371224|ref|ZP_08463184.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
gi|332976466|gb|EGK13312.1| cfr family radical SAM enzyme [Desmospora sp. 8437]
Length = 350
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 119/183 (65%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP NY A V+ +R++ GL ++ +RITVST GIV +I +F + + LA+SL
Sbjct: 160 IGEPFENYDASVQFMRVIQDEKGL--NLAQRRITVSTSGIVPSIYRFAEEGLQVGLAISL 217
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP Q +R ++MP + +PLE+L+ A + Y + + ++I EY ++ G ND +HAH+LG+
Sbjct: 218 HAPNQALRKRLMPVSYRYPLEELLAACRYYVQKTGRRITYEYALIGGKNDAPEHAHELGR 277
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LLE ++NLIP N + + RT +++ F+ IL+ SYN+ TT+R++ G DI AC
Sbjct: 278 LLEGSGSLINLIPVNHVPERNYTRTPR-NRIFKFRDILQ-SYNLNTTIRREHGSDIEAAC 335
Query: 178 GQL 180
GQL
Sbjct: 336 GQL 338
>gi|365108779|ref|ZP_09336577.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
gi|363640248|gb|EHL79739.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii 4_7_47CFAA]
Length = 336
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 130 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 188
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND +HAHQL
Sbjct: 189 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLA 248
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 249 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 306
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 307 CGQLAGDVIDR 317
>gi|296133296|ref|YP_003640543.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
gi|296031874|gb|ADG82642.1| radical SAM enzyme, Cfr family [Thermincola potens JR]
Length = 356
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 111/180 (61%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL+NY A+++ +R++T V + IT+ST G+V I K + L L+VSLHAP
Sbjct: 160 GEPLDNYEAVLKFIRLITAPYALNVGMRHITLSTCGLVPQIYKLAEEKLALTLSVSLHAP 219
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R ++MP R +PLE+L+ A EY K + ++I EY ++ VND + HA +L +L++
Sbjct: 220 NNELRNKLMPVNRKYPLEELIPACHEYIKKTGRRITFEYTLIKDVNDSQGHAEELARLIK 279
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NP+ +R S++ V FQ IL + + TVR++MG DI ACGQL
Sbjct: 280 GMLCHVNLIPVNPVAERRWYRPSTET-VKRFQTILERN-RVPATVRREMGTDIDAACGQL 337
>gi|255074899|ref|XP_002501124.1| predicted protein [Micromonas sp. RCC299]
gi|226516387|gb|ACO62382.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 368
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 116/189 (61%), Gaps = 10/189 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ++ A+R MT F + + +TVSTVG+ +I + D P + LA+SLHA
Sbjct: 183 MGEPLDNYEEVLIALRAMTHQAVFDMRQRSVTVSTVGVPASIRRLADDAPNVGLALSLHA 242
Query: 60 PVQDVRCQIMPAA--RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P QD+R ++P+A + L +L +L+ +++ S + IEYI++DGVND HA +LG+
Sbjct: 243 PTQDLRATLLPSAAGTSHTLGRLTESLRYHRQKSGRGAMIEYIVIDGVNDSPTHARELGE 302
Query: 118 LLETFQVVVNLIPFNP--IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR--KQMGQDI 173
L F VNLIP+NP +G +R+ +DD + IL + ++ VR + G+++
Sbjct: 303 LSGYF---VNLIPYNPTDVGGTHGYRSPADDALERMASILGDEFGVKAKVRWSTRRGREV 359
Query: 174 SGACGQLVV 182
GACGQL +
Sbjct: 360 DGACGQLAL 368
>gi|429087664|ref|ZP_19150396.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
gi|426507467|emb|CCK15508.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
universalis NCTC 9529]
Length = 388
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E ++A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|337286227|ref|YP_004625700.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
gi|335359055|gb|AEH44736.1| radical SAM enzyme, Cfr family [Thermodesulfatator indicus DSM
15286]
Length = 349
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 4/185 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A++I+ F S +R+TVSTVG++ + K D+ LA+SLHA
Sbjct: 166 MGEPLANYENILRALKILLDEKGFNFSRRRVTVSTVGLIPQMEKLGKDITA-KLAISLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+D R Q+MP + +PL++L+ A + Y +I EY+ML GVND AH+L KLL
Sbjct: 225 ADEDKRTQLMPINKRYPLKELIPACRRYPLPKGWRITFEYLMLKGVNDSSHDAHKLAKLL 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ +NLIPFN ++ F+ S ++ + FQ IL SY T+RK G+DIS ACGQ
Sbjct: 285 KGVPAKINLIPFNEHPALP-FKCSDEETIFRFQGILL-SYGYVATIRKSKGRDISAACGQ 342
Query: 180 LVVNL 184
L L
Sbjct: 343 LATRL 347
>gi|429105680|ref|ZP_19167549.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|429111265|ref|ZP_19173035.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
gi|426292403|emb|CCJ93662.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 681]
gi|426312422|emb|CCJ99148.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
malonaticus 507]
Length = 388
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E ++A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLSAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|146312652|ref|YP_001177726.1| hypothetical protein Ent638_3011 [Enterobacter sp. 638]
gi|205829755|sp|A4WD95.1|RLMN_ENT38 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145319528|gb|ABP61675.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter sp. 638]
Length = 388
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VNDE HAHQL
Sbjct: 241 PNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|428767395|ref|YP_007153506.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis str. Symbioflor 1]
gi|427185568|emb|CCO72792.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis str. Symbioflor 1]
Length = 357
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|257087248|ref|ZP_05581609.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|422724088|ref|ZP_16780578.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
gi|424672515|ref|ZP_18109474.1| 23S rRNA methyltransferase [Enterococcus faecalis 599]
gi|256995278|gb|EEU82580.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|315026051|gb|EFT37983.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2137]
gi|402355552|gb|EJU90324.1| 23S rRNA methyltransferase [Enterococcus faecalis 599]
Length = 357
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIQKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|334143334|ref|YP_004536490.1| ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
gi|333964245|gb|AEG31011.1| Ribosomal RNA large subunit methyltransferase N
[Thioalkalimicrobium cyclicum ALM1]
Length = 385
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 117/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + ++ M + +S +R+T+ST G+V AI+K +++ ++LA+SLHA
Sbjct: 177 MGEPLLNVTHVFPVAKLLMDDNAYGLSKRRVTISTAGVVPAIDKLKAEV-DVSLAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +PLE LM AL+ Y + K I +EY+MLD VNDE +HAHQL
Sbjct: 236 PNNALRDELVPVNKKYPLEVLMPALRRYVADGHAKKHITVEYVMLDQVNDEIEHAHQLVG 295
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIPFNP + R SS+++V FQ++L + I T+RK G DI AC
Sbjct: 296 LLGDLVCKVNLIPFNPFPNTPYLR-SSNNRVHRFQRVLHEA-GINCTIRKTRGDDIDAAC 353
Query: 178 GQLVVNLPDK 187
GQL + D+
Sbjct: 354 GQLAGKVKDR 363
>gi|254449223|ref|ZP_05062672.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
gi|198261200|gb|EDY85496.1| radical SAM enzyme, Cfr family [gamma proteobacterium HTCC5015]
Length = 380
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +++AV +M + + +S +++T+ST G+V A+ + D LAVSLHA
Sbjct: 177 MGEPLMNYRPVIQAVNTMMDDMGYGLSKRKVTISTSGMVPAMERMIEDTQ-CALAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + PL +LM + + ++ + EY+ML+GVND + AH+LGKL
Sbjct: 236 PNDSLRDELVPINKKHPLNELMGVCDRWVEAGPKRNVTYEYVMLEGVNDNREQAHELGKL 295
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ + VNLIPFNP + S ++ SS+ ++ F++IL SY + T RK G DI ACG
Sbjct: 296 LKAREAKVNLIPFNPFPN-SGYKRSSEARIKEFKRIL-NSYGVFTFPRKTRGDDIDAACG 353
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 354 QLVGKVQDR 362
>gi|29376559|ref|NP_815713.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis V583]
gi|227520169|ref|ZP_03950218.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227555397|ref|ZP_03985444.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229549611|ref|ZP_04438336.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255972309|ref|ZP_05422895.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255975469|ref|ZP_05426055.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256956502|ref|ZP_05560673.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256961519|ref|ZP_05565690.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256962655|ref|ZP_05566826.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257079424|ref|ZP_05573785.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|257082189|ref|ZP_05576550.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257090325|ref|ZP_05584686.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257416428|ref|ZP_05593422.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257419673|ref|ZP_05596667.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|293382216|ref|ZP_06628158.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|293388635|ref|ZP_06633131.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294780328|ref|ZP_06745697.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300860541|ref|ZP_07106628.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|307270284|ref|ZP_07551592.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|307277716|ref|ZP_07558802.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|307287862|ref|ZP_07567895.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|312900861|ref|ZP_07760155.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|312902828|ref|ZP_07762032.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|312908292|ref|ZP_07767256.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|312951214|ref|ZP_07770116.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|384513619|ref|YP_005708712.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
gi|397700280|ref|YP_006538068.1| radical SAM superfamily protein [Enterococcus faecalis D32]
gi|422690387|ref|ZP_16748444.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
gi|422692673|ref|ZP_16750688.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
gi|422698247|ref|ZP_16756164.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
gi|422699915|ref|ZP_16757774.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
gi|422703829|ref|ZP_16761646.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
gi|422711497|ref|ZP_16768426.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
gi|422712438|ref|ZP_16769206.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
gi|422716518|ref|ZP_16773221.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
gi|422721720|ref|ZP_16778303.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
gi|422725572|ref|ZP_16782031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
gi|422730261|ref|ZP_16786654.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
gi|422735692|ref|ZP_16791958.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
gi|422741919|ref|ZP_16795941.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
gi|422870146|ref|ZP_16916644.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
gi|424678319|ref|ZP_18115159.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV103]
gi|424682177|ref|ZP_18118954.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV116]
gi|424685441|ref|ZP_18122139.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV129]
gi|424688165|ref|ZP_18124781.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV25]
gi|424691070|ref|ZP_18127597.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV31]
gi|424694529|ref|ZP_18130927.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV37]
gi|424696447|ref|ZP_18132796.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV41]
gi|424702048|ref|ZP_18138211.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV62]
gi|424704270|ref|ZP_18140372.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV63]
gi|424712736|ref|ZP_18144905.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV65]
gi|424718764|ref|ZP_18147993.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis ERV68]
gi|424722240|ref|ZP_18151304.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV72]
gi|424722985|ref|ZP_18152005.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV73]
gi|424728331|ref|ZP_18156938.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV81]
gi|424740535|ref|ZP_18168917.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV85]
gi|424749892|ref|ZP_18177969.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV93]
gi|424759355|ref|ZP_18187021.1| 23S rRNA methyltransferase [Enterococcus faecalis R508]
gi|430360809|ref|ZP_19426467.1| Fe-S-cluster redox enzyme [Enterococcus faecalis OG1X]
gi|430367269|ref|ZP_19427832.1| Fe-S-cluster redox enzyme [Enterococcus faecalis M7]
gi|81585123|sp|Q833B6.1|RLMN_ENTFA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|29344023|gb|AAO81783.1| conserved hypothetical protein TIGR00048 [Enterococcus faecalis
V583]
gi|227072382|gb|EEI10345.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX0104]
gi|227175440|gb|EEI56412.1| Fe-S-cluster redox enzyme [Enterococcus faecalis HH22]
gi|229305276|gb|EEN71272.1| Fe-S-cluster redox enzyme [Enterococcus faecalis ATCC 29200]
gi|255963327|gb|EET95803.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|255968341|gb|EET98963.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256946998|gb|EEU63630.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256952015|gb|EEU68647.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256953151|gb|EEU69783.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256987454|gb|EEU74756.1| 23S rRNA methyltransferase [Enterococcus faecalis JH1]
gi|256990219|gb|EEU77521.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256999137|gb|EEU85657.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257158256|gb|EEU88216.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257161501|gb|EEU91461.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|291080400|gb|EFE17764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis R712]
gi|291082010|gb|EFE18973.1| radical SAM enzyme, Cfr family [Enterococcus faecalis S613]
gi|294452592|gb|EFG21025.1| radical SAM enzyme, Cfr family [Enterococcus faecalis PC1.1]
gi|300849580|gb|EFK77330.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TUSoD
Ef11]
gi|306501007|gb|EFM70314.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0109]
gi|306505595|gb|EFM74779.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0860]
gi|306513338|gb|EFM81962.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4248]
gi|310625706|gb|EFQ08989.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 512]
gi|310630748|gb|EFQ14031.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0102]
gi|310633882|gb|EFQ17165.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0635]
gi|311291960|gb|EFQ70516.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0470]
gi|315031044|gb|EFT42976.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0017]
gi|315034600|gb|EFT46532.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0027]
gi|315143477|gb|EFT87493.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2141]
gi|315149242|gb|EFT93258.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0012]
gi|315152618|gb|EFT96634.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0031]
gi|315159454|gb|EFU03471.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0312]
gi|315164747|gb|EFU08764.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1302]
gi|315167578|gb|EFU11595.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1341]
gi|315171638|gb|EFU15655.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1342]
gi|315173222|gb|EFU17239.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX1346]
gi|315575041|gb|EFU87232.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309B]
gi|315576758|gb|EFU88949.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0630]
gi|315582467|gb|EFU94658.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0309A]
gi|327535508|gb|AEA94342.1| cfr family radical SAM enzyme [Enterococcus faecalis OG1RF]
gi|329568816|gb|EGG50616.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis TX1467]
gi|397336919|gb|AFO44591.1| radical SAM superfamily protein [Enterococcus faecalis D32]
gi|402349548|gb|EJU84492.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV116]
gi|402351647|gb|EJU86527.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV103]
gi|402358791|gb|EJU93451.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV129]
gi|402361557|gb|EJU96107.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV25]
gi|402362914|gb|EJU97426.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV31]
gi|402370167|gb|EJV04403.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV62]
gi|402370459|gb|EJV04666.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV37]
gi|402377833|gb|EJV11723.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV41]
gi|402379734|gb|EJV13524.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV65]
gi|402380305|gb|EJV14065.1| 23S rRNA m2A2503 methyltransferase [Enterococcus faecalis ERV68]
gi|402382359|gb|EJV16026.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV63]
gi|402389425|gb|EJV22821.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV72]
gi|402394135|gb|EJV27330.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV81]
gi|402400392|gb|EJV33223.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV73]
gi|402401956|gb|EJV34695.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV85]
gi|402404813|gb|EJV37426.1| 23S rRNA methyltransferase [Enterococcus faecalis R508]
gi|402407461|gb|EJV39991.1| 23S rRNA methyltransferase [Enterococcus faecalis ERV93]
gi|429512746|gb|ELA02344.1| Fe-S-cluster redox enzyme [Enterococcus faecalis OG1X]
gi|429516742|gb|ELA06221.1| Fe-S-cluster redox enzyme [Enterococcus faecalis M7]
Length = 357
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|257880074|ref|ZP_05659727.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257882309|ref|ZP_05661962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257885503|ref|ZP_05665156.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257891165|ref|ZP_05670818.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257893979|ref|ZP_05673632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260560313|ref|ZP_05832489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|261208250|ref|ZP_05922923.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289565948|ref|ZP_06446387.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|293563079|ref|ZP_06677545.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|293567506|ref|ZP_06678851.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|294615994|ref|ZP_06695821.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|294617653|ref|ZP_06697281.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|294623617|ref|ZP_06702455.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|314940253|ref|ZP_07847426.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|314941689|ref|ZP_07848568.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|314947667|ref|ZP_07851076.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|314950654|ref|ZP_07853734.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|314992479|ref|ZP_07857900.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|314996873|ref|ZP_07861878.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|383329602|ref|YP_005355486.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|389869456|ref|YP_006376879.1| Fe-S-cluster redox protein [Enterococcus faecium DO]
gi|406579734|ref|ZP_11054962.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|406582048|ref|ZP_11057181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|406584140|ref|ZP_11059176.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|406589619|ref|ZP_11064049.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410936165|ref|ZP_11368034.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|415899923|ref|ZP_11551718.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|416139196|ref|ZP_11599133.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|424792617|ref|ZP_18218830.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|424797774|ref|ZP_18223326.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|424826294|ref|ZP_18251204.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|424857869|ref|ZP_18281953.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|424868563|ref|ZP_18292305.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|424950906|ref|ZP_18366047.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|424955308|ref|ZP_18370150.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|424958812|ref|ZP_18373437.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|424961262|ref|ZP_18375717.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|424964863|ref|ZP_18378925.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|424967212|ref|ZP_18380920.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|424971640|ref|ZP_18385067.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|424973752|ref|ZP_18387017.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|424977232|ref|ZP_18390264.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|424981352|ref|ZP_18394088.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|424984783|ref|ZP_18397301.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|424989513|ref|ZP_18401777.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|424991169|ref|ZP_18403337.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|424994655|ref|ZP_18406586.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|424999328|ref|ZP_18410955.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|425000596|ref|ZP_18412152.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|425005055|ref|ZP_18416333.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|425008633|ref|ZP_18419703.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|425011933|ref|ZP_18422790.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|425013474|ref|ZP_18424204.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|425017031|ref|ZP_18427567.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|425020688|ref|ZP_18430983.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|425023764|ref|ZP_18433865.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|425035059|ref|ZP_18439911.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|425038929|ref|ZP_18443507.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|425042369|ref|ZP_18446709.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|425045819|ref|ZP_18449888.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|425049029|ref|ZP_18452905.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|425053288|ref|ZP_18456841.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|425058808|ref|ZP_18462183.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|425059772|ref|ZP_18463091.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|427395601|ref|ZP_18888523.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430820558|ref|ZP_19439186.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430823875|ref|ZP_19442444.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430826729|ref|ZP_19444903.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430829314|ref|ZP_19447410.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430832244|ref|ZP_19450291.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430845039|ref|ZP_19462935.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430847340|ref|ZP_19465179.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430850546|ref|ZP_19468306.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430853708|ref|ZP_19471435.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430856549|ref|ZP_19474235.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430863746|ref|ZP_19480191.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430866956|ref|ZP_19482182.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430924609|ref|ZP_19485396.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430961994|ref|ZP_19487277.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|431012240|ref|ZP_19490031.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|431204832|ref|ZP_19500709.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|431238555|ref|ZP_19503424.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|431260023|ref|ZP_19505529.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|431309281|ref|ZP_19508662.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|431381565|ref|ZP_19511167.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|431451877|ref|ZP_19514057.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|431517056|ref|ZP_19516446.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|431549988|ref|ZP_19519301.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|431682644|ref|ZP_19524607.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|431744636|ref|ZP_19533504.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|431745283|ref|ZP_19534132.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|431749688|ref|ZP_19538425.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|431755622|ref|ZP_19544271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|431760784|ref|ZP_19549378.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|431765743|ref|ZP_19554246.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|431768217|ref|ZP_19556657.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|431771402|ref|ZP_19559786.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|431774199|ref|ZP_19562511.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|431777322|ref|ZP_19565576.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|431779992|ref|ZP_19568181.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|431783071|ref|ZP_19571195.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|431786532|ref|ZP_19574544.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|447913545|ref|YP_007394957.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
gi|257814302|gb|EEV43060.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,230,933]
gi|257817967|gb|EEV45295.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,502]
gi|257821359|gb|EEV48489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,501]
gi|257827525|gb|EEV54151.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,410]
gi|257830358|gb|EEV56965.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium 1,231,408]
gi|260073658|gb|EEW61984.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium C68]
gi|260077507|gb|EEW65225.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium TC 6]
gi|289162232|gb|EFD10093.1| cfr family radical SAM enzyme [Enterococcus faecium D344SRF]
gi|291589749|gb|EFF21552.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1071]
gi|291591180|gb|EFF22862.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1636]
gi|291596117|gb|EFF27382.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1679]
gi|291596943|gb|EFF28156.1| radical SAM enzyme, Cfr family [Enterococcus faecium U0317]
gi|291604993|gb|EFF34461.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1162]
gi|313589016|gb|EFR67861.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a01]
gi|313592939|gb|EFR71784.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133B]
gi|313597201|gb|EFR76046.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133A]
gi|313599461|gb|EFR78304.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133C]
gi|313640573|gb|EFS05153.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0133a04]
gi|313645908|gb|EFS10488.1| radical SAM enzyme, Cfr family [Enterococcus faecium TX0082]
gi|364089102|gb|EHM31819.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4453]
gi|364090753|gb|EHM33298.1| radical SAM enzyme, Cfr family [Enterococcus faecium E4452]
gi|378939296|gb|AFC64368.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium Aus0004]
gi|388534705|gb|AFK59897.1| Fe-S-cluster redox enzyme [Enterococcus faecium DO]
gi|402917477|gb|EJX38264.1| 23S rRNA methyltransferase [Enterococcus faecium V689]
gi|402920323|gb|EJX40847.1| 23S rRNA methyltransferase [Enterococcus faecium S447]
gi|402924452|gb|EJX44661.1| 23S rRNA methyltransferase [Enterococcus faecium R501]
gi|402927865|gb|EJX47789.1| 23S rRNA methyltransferase [Enterococcus faecium R499]
gi|402932138|gb|EJX51671.1| 23S rRNA methyltransferase [Enterococcus faecium R496]
gi|402934375|gb|EJX53731.1| 23S rRNA methyltransferase [Enterococcus faecium R494]
gi|402936959|gb|EJX56104.1| 23S rRNA methyltransferase [Enterococcus faecium R497]
gi|402938962|gb|EJX57924.1| 23S rRNA methyltransferase [Enterococcus faecium R446]
gi|402944252|gb|EJX62679.1| 23S rRNA methyltransferase [Enterococcus faecium P1986]
gi|402945450|gb|EJX63796.1| 23S rRNA methyltransferase [Enterococcus faecium P1190]
gi|402954876|gb|EJX72458.1| 23S rRNA methyltransferase [Enterococcus faecium P1140]
gi|402958008|gb|EJX75362.1| 23S rRNA methyltransferase [Enterococcus faecium P1137]
gi|402958591|gb|EJX75898.1| 23S rRNA methyltransferase [Enterococcus faecium P1139]
gi|402963945|gb|EJX80782.1| 23S rRNA methyltransferase [Enterococcus faecium ERV99]
gi|402966747|gb|EJX83360.1| 23S rRNA methyltransferase [Enterococcus faecium P1123]
gi|402967916|gb|EJX84429.1| 23S rRNA methyltransferase [Enterococcus faecium ERV69]
gi|402968627|gb|EJX85099.1| 23S rRNA methyltransferase [Enterococcus faecium ERV38]
gi|402977520|gb|EJX93331.1| 23S rRNA methyltransferase [Enterococcus faecium ERV26]
gi|402979267|gb|EJX94943.1| 23S rRNA methyltransferase [Enterococcus faecium ERV165]
gi|402979458|gb|EJX95124.1| 23S rRNA methyltransferase [Enterococcus faecium ERV168]
gi|402987699|gb|EJY02744.1| 23S rRNA methyltransferase [Enterococcus faecium ERV102]
gi|402988903|gb|EJY03874.1| 23S rRNA methyltransferase [Enterococcus faecium ERV161]
gi|402991921|gb|EJY06658.1| 23S rRNA methyltransferase [Enterococcus faecium ERV1]
gi|402995225|gb|EJY09702.1| 23S rRNA methyltransferase [Enterococcus faecium E422]
gi|403000887|gb|EJY14971.1| 23S rRNA methyltransferase [Enterococcus faecium E417]
gi|403005671|gb|EJY19361.1| 23S rRNA methyltransferase [Enterococcus faecium C621]
gi|403008795|gb|EJY22286.1| 23S rRNA methyltransferase [Enterococcus faecium C497]
gi|403008869|gb|EJY22355.1| 23S rRNA methyltransferase [Enterococcus faecium C1904]
gi|403018127|gb|EJY30834.1| 23S rRNA methyltransferase [Enterococcus faecium 513]
gi|403018855|gb|EJY31508.1| 23S rRNA methyltransferase [Enterococcus faecium 514]
gi|403023631|gb|EJY35869.1| 23S rRNA methyltransferase [Enterococcus faecium 511]
gi|403026258|gb|EJY38259.1| 23S rRNA methyltransferase [Enterococcus faecium 510]
gi|403029162|gb|EJY40932.1| 23S rRNA methyltransferase [Enterococcus faecium 509]
gi|403030899|gb|EJY42552.1| 23S rRNA methyltransferase [Enterococcus faecium 506]
gi|403037510|gb|EJY48780.1| 23S rRNA methyltransferase [Enterococcus faecium 504]
gi|403043242|gb|EJY54163.1| 23S rRNA methyltransferase [Enterococcus faecium 503]
gi|404455065|gb|EKA01934.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD4E]
gi|404458710|gb|EKA05118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD3E]
gi|404464533|gb|EKA10061.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD2E]
gi|404470522|gb|EKA15147.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD1E]
gi|410735406|gb|EKQ77318.1| ribosomal RNA large subunit methyltransferase N [Enterococcus sp.
GMD5E]
gi|425723590|gb|EKU86477.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
durans FB129-CNAB-4]
gi|430439433|gb|ELA49785.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0045]
gi|430441908|gb|ELA51979.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0120]
gi|430444754|gb|ELA54572.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0164]
gi|430480235|gb|ELA57423.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0333]
gi|430481220|gb|ELA58381.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0269]
gi|430495873|gb|ELA71993.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1050]
gi|430535414|gb|ELA75822.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1185]
gi|430537283|gb|ELA77627.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1133]
gi|430540261|gb|ELA80471.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1258]
gi|430544309|gb|ELA84347.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1392]
gi|430547806|gb|ELA87720.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430551006|gb|ELA90776.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1574]
gi|430553808|gb|ELA93489.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1575]
gi|430555904|gb|ELA95432.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1576]
gi|430559751|gb|ELA99075.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1578]
gi|430571355|gb|ELB10271.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1620]
gi|430572256|gb|ELB11118.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1622]
gi|430576762|gb|ELB15387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1623]
gi|430579210|gb|ELB17733.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1626]
gi|430581927|gb|ELB20365.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1627]
gi|430585056|gb|ELB23359.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1630]
gi|430585610|gb|ELB23889.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1634]
gi|430590676|gb|ELB28730.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1731]
gi|430598550|gb|ELB36287.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1904]
gi|430605379|gb|ELB42784.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2071]
gi|430610719|gb|ELB47850.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2134]
gi|430611275|gb|ELB48377.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2297]
gi|430616844|gb|ELB53739.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2883]
gi|430623454|gb|ELB60146.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E3346]
gi|430627682|gb|ELB64165.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4215]
gi|430629601|gb|ELB65997.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1321]
gi|430633466|gb|ELB69632.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1644]
gi|430634601|gb|ELB70719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2369]
gi|430639434|gb|ELB75307.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E2560]
gi|430641073|gb|ELB76893.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E4389]
gi|430645425|gb|ELB80940.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6045]
gi|430646093|gb|ELB81588.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E6012]
gi|445189254|gb|AGE30896.1| Ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium NRRL B-2354]
Length = 355
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 113/194 (58%), Gaps = 4/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ S V F +L+ + + +RK+ G DI AC
Sbjct: 283 KDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAAC 341
Query: 178 GQLVVNLPDKISAK 191
GQL K AK
Sbjct: 342 GQLRSKQMKKTVAK 355
>gi|257084807|ref|ZP_05579168.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256992837|gb|EEU80139.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
Length = 357
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|257422170|ref|ZP_05599160.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|422705360|ref|ZP_16763162.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
gi|257163994|gb|EEU93954.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|315157206|gb|EFU01223.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0043]
Length = 357
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|395227152|ref|ZP_10405480.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|420366694|ref|ZP_14867527.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|421845430|ref|ZP_16278584.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|424731693|ref|ZP_18160275.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|391324001|gb|EIQ80616.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|394719335|gb|EJF24940.1| 23S rRNA methyltransferase [Citrobacter sp. A1]
gi|411773333|gb|EKS56892.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii ATCC 8090 = MTCC 1658]
gi|422893831|gb|EKU33647.1| 23s rrna methyltransferase [Citrobacter sp. L17]
gi|455641364|gb|EMF20535.1| ribosomal RNA large subunit methyltransferase N [Citrobacter
freundii GTC 09479]
Length = 388
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|53802993|ref|YP_115280.1| hypothetical protein MCA2887 [Methylococcus capsulatus str. Bath]
gi|81680833|sp|Q603C0.1|RLMN_METCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53756754|gb|AAU91045.1| conserved hypothetical protein TIGR00048 [Methylococcus capsulatus
str. Bath]
Length = 366
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 120/189 (63%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A R+M + +S +R+T+ST GIV A+++ +++ ++LAVSLHA
Sbjct: 170 MGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVSLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L +L
Sbjct: 229 PDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRL 288
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP + S +R S + ++ F + L+ + I TT RK G+DI ACG
Sbjct: 289 LSHVPSKVNLIPFNPFPN-SAYRCSHPETIARFAQTLQDAGLI-TTTRKTRGRDIDAACG 346
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 347 QLVGKVNDR 355
>gi|237732496|ref|ZP_04562977.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
gi|226908035|gb|EEH93953.1| 23S rRNA methyltransferase [Citrobacter sp. 30_2]
Length = 388
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD +ND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|430860757|ref|ZP_19478352.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
gi|430551075|gb|ELA90844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1573]
Length = 355
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 113/194 (58%), Gaps = 4/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ S V F +L+ + + +RK+ G DI AC
Sbjct: 283 KDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAAC 341
Query: 178 GQLVVNLPDKISAK 191
GQL K AK
Sbjct: 342 GQLRSKQMKKTVAK 355
>gi|406986564|gb|EKE07127.1| hypothetical protein ACD_18C00179G0011 [uncultured bacterium]
Length = 339
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 116/185 (62%), Gaps = 7/185 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NY ++ +++++ F + + I+VST G+V I KF + LNLA+SLHA
Sbjct: 154 MGEPFMNYDNVMASIKLLNDKDAFNIGARHISVSTSGVVTGIKKFAKEPLQLNLAISLHA 213
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R ++MP + F +EK+M A++EY+ + ++I EY+M+DG+ND E+HA QL +LL
Sbjct: 214 PNDALRSELMPINKRFGIEKVMAAVEEYKNDRGRQIMFEYLMMDGINDREEHARQLIRLL 273
Query: 120 --ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+T +VNLI +NP G +F+ S + F+ IL + I+ + R GQDI+ AC
Sbjct: 274 GEDTSLYMVNLIRYNPTG---KFKPSLTQNIKKFKNILMRA-GIKVSERFAFGQDINAAC 329
Query: 178 GQLVV 182
GQL +
Sbjct: 330 GQLAL 334
>gi|297624942|ref|YP_003706376.1| radical SAM domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297166122|gb|ADI15833.1| radical SAM enzyme, Cfr family [Truepera radiovictrix DSM 17093]
Length = 349
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/186 (43%), Positives = 115/186 (61%), Gaps = 7/186 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGE L NY + A+R M GL +SP+RIT+STVG+ I + ++ L LAVSL
Sbjct: 158 MGEALLNYDNALGAIRTMIHPEGL--DMSPRRITLSTVGLPGRIRRLAAERLPLVLAVSL 215
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP + R +I+P A A +E+++ AL ++Q +++ IEY ML GVND A L
Sbjct: 216 HAPDEKTRREIIPTAHAHAIEEIIAALHDWQAAGGRRVTIEYTMLAGVNDALWQAEALVA 275
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL V VNLIPFNP G+ S FR+SS +++ F+++L G+ + +VR G+D GAC
Sbjct: 276 LLRGLVVHVNLIPFNPWGA-SPFRSSSRAQIARFERVLTGA-GLSVSVRFSRGRDTGGAC 333
Query: 178 GQLVVN 183
GQL ++
Sbjct: 334 GQLALS 339
>gi|430835133|ref|ZP_19453129.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430836828|ref|ZP_19454805.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430839860|ref|ZP_19457797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430859356|ref|ZP_19476968.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
gi|430484562|gb|ELA61536.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0679]
gi|430488151|gb|ELA64844.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0680]
gi|430490309|gb|ELA66841.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E0688]
gi|430543717|gb|ELA83772.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecium E1552]
Length = 355
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ S V F +L+ + + +RK+ G DI AC
Sbjct: 283 KDKKKLAYVNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|269468799|gb|EEZ80403.1| hypothetical protein Sup05_0839 [uncultured SUP05 cluster
bacterium]
Length = 358
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 117/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A ++ L F +S +++T+ST G+V A+ + P ++LA+SLHA
Sbjct: 162 MGEPLLNEKSVYSACDLLLDDLAFGLSRRKVTISTSGVVPALYRMAQTTP-VSLAISLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P ++R +++P + +P+E+LM A K Y + Q+ I EY+MLDGVND +HA +L K
Sbjct: 221 PDDELRDELVPINQKYPIEELMAACKNYLTSGTQERHILFEYVMLDGVNDTMEHAKKLAK 280
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIPFNP +Q++TS + FQ +L + IRT R+ G+D+ GAC
Sbjct: 281 LLRGISAKVNLIPFNPFPK-TQYKTSKAFTIKQFQDVLFQA-GIRTMTRRTRGEDVDGAC 338
Query: 178 GQLVVNLPDK 187
GQL + DK
Sbjct: 339 GQLAGKVIDK 348
>gi|282857182|ref|ZP_06266426.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
gi|282584968|gb|EFB90292.1| 23S rRNA m2A2503 methyltransferase [Pyramidobacter piscolens W5455]
Length = 365
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 110/185 (59%), Gaps = 11/185 (5%)
Query: 1 MGEPLNNYAALVEAVRI-----MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 55
MGEPL NY +V+AVR+ M GL S + +T+ST GI I + + + L +
Sbjct: 181 MGEPLLNYENVVKAVRMFLEPKMRGL----SVRHVTISTSGIPEGIRRLADEGLDIYLCL 236
Query: 56 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
SLHAP ++R +IMP FPL + +AL+ +QK + ++ IEY+ML VND A++L
Sbjct: 237 SLHAPNNELRSRIMPVNERFPLGAVFSALEYWQKKTGVRLTIEYVMLKNVNDTPDCAYEL 296
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L QV VNLIP+NP+ +QF S +++ F KIL+G N+ VRK+ G DI
Sbjct: 297 ATLFSNLQVYVNLIPYNPVAG-TQFARPSASRIAPFMKILKG-LNVECEVRKEHGADIDA 354
Query: 176 ACGQL 180
ACGQL
Sbjct: 355 ACGQL 359
>gi|416787465|ref|ZP_11879529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|416799095|ref|ZP_11884444.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|420281761|ref|ZP_14783997.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|425268347|ref|ZP_18659985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
gi|209763358|gb|ACI79991.1| hypothetical protein ECs3379 [Escherichia coli]
gi|320646304|gb|EFX15231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. 493-89]
gi|320651809|gb|EFX20189.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H- str. H 2687]
gi|390781098|gb|EIO48787.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW06591]
gi|408182466|gb|EKI08972.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5412]
Length = 384
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|307132063|ref|YP_003884079.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
gi|306529592|gb|ADM99522.1| 23S rRNA m(2)A2503 methyltransferase [Dickeya dadantii 3937]
Length = 392
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 245 PTDEIRNEIMPINKKYDIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 363 CGQLAGEVVDR 373
>gi|384519050|ref|YP_005706355.1| radical SAM superfamily protein [Enterococcus faecalis 62]
gi|323481183|gb|ADX80622.1| radical SAM superfamily protein [Enterococcus faecalis 62]
Length = 357
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKNNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|419076554|ref|ZP_13622068.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
gi|377920951|gb|EHU84965.1| 23S rRNA methyltransferase [Escherichia coli DEC3F]
Length = 336
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 130 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 188
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 189 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 248
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 249 ELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 306
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 307 CGQLAGDVIDR 317
>gi|283786133|ref|YP_003365998.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
gi|282949587|emb|CBG89205.1| radical SAM superfamily protein [Citrobacter rodentium ICC168]
Length = 388
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|373851914|ref|ZP_09594714.1| Ribosomal RNA large subunit methyltransferase N [Opitutaceae
bacterium TAV5]
gi|372474143|gb|EHP34153.1| Ribosomal RNA large subunit methyltransferase N [Opitutaceae
bacterium TAV5]
Length = 373
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 109/183 (59%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY A++ A+ I+ G + ++IT+STVG+V I + + ++LAVSLH
Sbjct: 191 MGEPLHNYDAVMRALDILRDGNGLALGARKITLSTVGVVPGIVRLADEERPVHLAVSLHG 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
Q+ R ++PAARA+PL+ LM A + Y + Q++IF E+ +++G ND AH +G+LL
Sbjct: 251 ATQEERAALVPAARAWPLDALMEACRYYVEKQQRRIFFEWTLIEGKNDGPDQAHAVGRLL 310
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
Q VNLIP NP + T + FQ +L Y + +TVR++ G DI CGQ
Sbjct: 311 RGLQAQVNLIPLNPTSGYAGGPTRV-EAAKRFQSVL-ADYGLPSTVRQRRGIDIGAGCGQ 368
Query: 180 LVV 182
L
Sbjct: 369 LAT 371
>gi|194432102|ref|ZP_03064391.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|417673263|ref|ZP_12322718.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
gi|194419631|gb|EDX35711.1| radical SAM enzyme, Cfr family [Shigella dysenteriae 1012]
gi|332089738|gb|EGI94839.1| hypothetical protein SD15574_2919 [Shigella dysenteriae 155-74]
Length = 384
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP + + SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPG-APYERSSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|288941010|ref|YP_003443250.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
gi|288896382|gb|ADC62218.1| radical SAM enzyme, Cfr family [Allochromatium vinosum DSM 180]
Length = 365
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/189 (43%), Positives = 120/189 (63%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A V+A+ +M L + ++ +R+T+ST GIV I + ++ ++LAVSLHA
Sbjct: 162 MGEPLANFEAAVKAMDVMQDDLAYMLAKQRVTLSTSGIVPNIYRLR-EVSDVSLAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P R +PL +L+ A K Y + ++KI EY+MLDG+ND HA QL +L
Sbjct: 221 PNDELRDELVPINRKYPLAELIPACKHYVAGDKRRKITWEYVMLDGINDSPAHAKQLIRL 280
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE VNLIPFNP + S F TS D+V +F++ L S I RK G +I+ ACG
Sbjct: 281 LEGVPSKVNLIPFNPF-TGSDFGTSPPDRVETFRERLARS-GIFAMTRKTRGDEIAAACG 338
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 339 QLVGRVQDR 347
>gi|417367061|ref|ZP_12139100.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
gi|353590196|gb|EHC48787.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Hvittingfoss str.
A4-620]
Length = 336
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 130 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 188
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 189 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 248
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 249 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 306
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 307 CGQLAGDVIDR 317
>gi|260598903|ref|YP_003211474.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|429101334|ref|ZP_19163308.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
gi|260218080|emb|CBA32831.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis z3032]
gi|426287983|emb|CCJ89421.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
turicensis 564]
Length = 388
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|437838913|ref|ZP_20846081.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
gi|435298122|gb|ELO74366.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. SARB17]
Length = 347
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 141 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 199
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 200 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 259
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 260 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 317
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 318 CGQLAGDVIDR 328
>gi|124515329|gb|EAY56839.1| putative radical SAM family protein [Leptospirillum rubarum]
Length = 379
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ LV ++ ++T F +S +RITVST G+ I + +NLAVSL A
Sbjct: 177 MGEPLANFDHLVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +++R +MP +R P+ +++A + Y ++Q+I EY++L GVND E A +L +LL
Sbjct: 237 PTEELRENLMPISRHHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLL 296
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F+ VNLIPFNP S + D+V FQ+IL + + T+R G+DI GACGQ
Sbjct: 297 APFRSKVNLIPFNPYPG-SPYHRPDKDRVRRFQEILL-AKGVTATLRTTRGEDILGACGQ 354
Query: 180 LVVNLPDKISAKST 193
L ++ ++ +S+
Sbjct: 355 LALSPSPALTMESS 368
>gi|408372889|ref|ZP_11170588.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
gi|407767241|gb|EKF75679.1| Fe-S-cluster redox protein [Alcanivorax hongdengensis A-11-3]
Length = 381
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+RIM L + + KRIT+ST G++ +++ DL + LAVSLHA
Sbjct: 168 MGEPLLNYDNVLTAMRIMKDDLGYGIGKKRITLSTSGVIPKMDQLSDDLD-VALAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLG 116
P ++R +++P R +PL++LM A + Y KN + I +EY+ML VND+ +HA QL
Sbjct: 227 PNDELRNELVPLNRKYPLKELMAACRRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLV 286
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KLL V +NLIPFNP R+ D + F K L + + TTVR G DI A
Sbjct: 287 KLLNGIPVKINLIPFNPFPHAGYERSRKSD-ILEFHKYLNDN-GLLTTVRTTRGDDIDAA 344
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 345 CGQLVGQVQDR 355
>gi|15832633|ref|NP_311406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. Sakai]
gi|168748424|ref|ZP_02773446.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|168756289|ref|ZP_02781296.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|168761127|ref|ZP_02786134.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|168768609|ref|ZP_02793616.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|168773569|ref|ZP_02798576.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|168778483|ref|ZP_02803490.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|168787863|ref|ZP_02812870.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|168798888|ref|ZP_02823895.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|195936659|ref|ZP_03082041.1| hypothetical protein EscherichcoliO157_09385 [Escherichia coli
O157:H7 str. EC4024]
gi|208808631|ref|ZP_03250968.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208814380|ref|ZP_03255709.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208820776|ref|ZP_03261096.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209400754|ref|YP_002271987.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4115]
gi|217327135|ref|ZP_03443218.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254794463|ref|YP_003079300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. TW14359]
gi|261223051|ref|ZP_05937332.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261259398|ref|ZP_05951931.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291283738|ref|YP_003500556.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|387507882|ref|YP_006160138.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|387883711|ref|YP_006314013.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|416310003|ref|ZP_11656202.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|416321670|ref|ZP_11663518.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|416329944|ref|ZP_11669071.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|416775881|ref|ZP_11874617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|416809527|ref|ZP_11889129.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97]
gi|416820198|ref|ZP_11893687.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|416831018|ref|ZP_11898977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|419046194|ref|ZP_13593131.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|419052228|ref|ZP_13599099.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|419058263|ref|ZP_13605068.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|419063730|ref|ZP_13610457.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|419070628|ref|ZP_13616249.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|419081709|ref|ZP_13627157.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|419087564|ref|ZP_13632920.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|419093455|ref|ZP_13638740.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|419099354|ref|ZP_13644551.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|419105081|ref|ZP_13650210.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|419110541|ref|ZP_13655597.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|419115900|ref|ZP_13660916.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|419121471|ref|ZP_13666427.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|419126965|ref|ZP_13671849.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|419132531|ref|ZP_13677368.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|419137567|ref|ZP_13682362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|420270560|ref|ZP_14772918.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|420276519|ref|ZP_14778803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|420287930|ref|ZP_14790116.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|420293547|ref|ZP_14795663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|420299389|ref|ZP_14801438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|420305342|ref|ZP_14807336.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|420310397|ref|ZP_14812330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|420316262|ref|ZP_14818137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|421813504|ref|ZP_16249222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|421819319|ref|ZP_16254815.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|421825313|ref|ZP_16260671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|421832046|ref|ZP_16267333.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|423726228|ref|ZP_17700289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|424078605|ref|ZP_17815596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|424085070|ref|ZP_17821573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|424091479|ref|ZP_17827424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|424098101|ref|ZP_17833423.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|424104334|ref|ZP_17839115.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|424111006|ref|ZP_17845250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|424116945|ref|ZP_17850793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|424123127|ref|ZP_17856458.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|424129291|ref|ZP_17862207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|424135565|ref|ZP_17868037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|424142130|ref|ZP_17874026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|424148560|ref|ZP_17879944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|424154377|ref|ZP_17885341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|424250489|ref|ZP_17890904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|424328684|ref|ZP_17896816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|424450811|ref|ZP_17902526.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|424457011|ref|ZP_17908157.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|424463448|ref|ZP_17913896.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|424469788|ref|ZP_17919621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|424476313|ref|ZP_17925638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|424482066|ref|ZP_17931056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|424488226|ref|ZP_17936803.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|424494790|ref|ZP_17942525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|424501596|ref|ZP_17948502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|424507843|ref|ZP_17954248.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|424515164|ref|ZP_17959858.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|424521384|ref|ZP_17965521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|424527277|ref|ZP_17971002.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|424533425|ref|ZP_17976784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|424539525|ref|ZP_17982477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|424545576|ref|ZP_17987991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|424551816|ref|ZP_17993684.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|424558002|ref|ZP_17999428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|424564348|ref|ZP_18005358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|424570481|ref|ZP_18011044.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|424576628|ref|ZP_18016712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|424582467|ref|ZP_18022121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|425099174|ref|ZP_18501913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|425105233|ref|ZP_18507559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|425111248|ref|ZP_18513175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|425127173|ref|ZP_18528350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|425132906|ref|ZP_18533763.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|425139413|ref|ZP_18539802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|425145207|ref|ZP_18545209.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|425151316|ref|ZP_18550937.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|425157179|ref|ZP_18556452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|425163538|ref|ZP_18562433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|425169278|ref|ZP_18567762.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|425175343|ref|ZP_18573472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|425181370|ref|ZP_18579076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|425187640|ref|ZP_18584923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|425194412|ref|ZP_18591191.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|425200888|ref|ZP_18597106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|425207270|ref|ZP_18603079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|425213029|ref|ZP_18608439.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|425219149|ref|ZP_18614126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|425225699|ref|ZP_18620176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|425231963|ref|ZP_18626012.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|425237882|ref|ZP_18631611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|425244097|ref|ZP_18637415.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|425250261|ref|ZP_18643207.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|425256090|ref|ZP_18648618.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|425262350|ref|ZP_18654367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|425295781|ref|ZP_18685992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|425312487|ref|ZP_18701680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|425318481|ref|ZP_18707279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|425324549|ref|ZP_18712927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|425330914|ref|ZP_18718779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|425337090|ref|ZP_18724472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|425343432|ref|ZP_18730331.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|425349241|ref|ZP_18735718.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|425355535|ref|ZP_18741610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|425361498|ref|ZP_18747155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|425367680|ref|ZP_18752850.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|425374030|ref|ZP_18758680.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|425386919|ref|ZP_18770485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|425393606|ref|ZP_18776721.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|425399705|ref|ZP_18782419.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|425405794|ref|ZP_18788025.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|425412184|ref|ZP_18793955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|425418505|ref|ZP_18799784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|425429766|ref|ZP_18810386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|428948186|ref|ZP_19020480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|428954282|ref|ZP_19026091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|428960247|ref|ZP_19031565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|428966871|ref|ZP_19037600.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|428972560|ref|ZP_19042911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|428979099|ref|ZP_19048935.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|428984910|ref|ZP_19054316.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|428990995|ref|ZP_19059996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|428996861|ref|ZP_19065470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|429003107|ref|ZP_19071244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|429009192|ref|ZP_19076719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|429015721|ref|ZP_19082626.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|429021557|ref|ZP_19088092.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|429027654|ref|ZP_19093669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|429033842|ref|ZP_19099378.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|429039900|ref|ZP_19105021.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|429045761|ref|ZP_19110487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|429051230|ref|ZP_19115801.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|429056604|ref|ZP_19120930.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|429062101|ref|ZP_19126128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|429068376|ref|ZP_19131854.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|429074324|ref|ZP_19137580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|429079518|ref|ZP_19142658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429827534|ref|ZP_19358588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429833895|ref|ZP_19364257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444926069|ref|ZP_21245372.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444931779|ref|ZP_21250824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444937229|ref|ZP_21256010.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444942860|ref|ZP_21261382.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444948272|ref|ZP_21266587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444953888|ref|ZP_21271988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444959413|ref|ZP_21277270.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444966218|ref|ZP_21283760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444970544|ref|ZP_21287911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444975832|ref|ZP_21292960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444981215|ref|ZP_21298131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444986610|ref|ZP_21303395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444991925|ref|ZP_21308572.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444997231|ref|ZP_21313733.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|445002808|ref|ZP_21319201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|445008246|ref|ZP_21324489.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|445013341|ref|ZP_21329452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|445019206|ref|ZP_21335175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|445024662|ref|ZP_21340490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|445029997|ref|ZP_21345676.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|445035465|ref|ZP_21351001.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|445041089|ref|ZP_21356466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|445046312|ref|ZP_21361567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|445051831|ref|ZP_21366882.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|445057603|ref|ZP_21372465.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
gi|452971706|ref|ZP_21969933.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC4009]
gi|205829862|sp|Q8XAA4.3|RLMN_ECO57 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807175|sp|B5Z0Y6.1|RLMN_ECO5E RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|13362849|dbj|BAB36802.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770632|gb|EDU34476.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4196]
gi|188017093|gb|EDU55215.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4113]
gi|189003147|gb|EDU72133.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4076]
gi|189356574|gb|EDU74993.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4401]
gi|189362276|gb|EDU80695.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4486]
gi|189368421|gb|EDU86837.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4501]
gi|189372335|gb|EDU90751.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC869]
gi|189378598|gb|EDU97014.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC508]
gi|208728432|gb|EDZ78033.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4206]
gi|208735657|gb|EDZ84344.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4045]
gi|208740899|gb|EDZ88581.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4042]
gi|209162154|gb|ACI39587.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
EC4115]
gi|209763360|gb|ACI79992.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763362|gb|ACI79993.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763364|gb|ACI79994.1| hypothetical protein ECs3379 [Escherichia coli]
gi|209763366|gb|ACI79995.1| hypothetical protein ECs3379 [Escherichia coli]
gi|217319502|gb|EEC27927.1| radical SAM enzyme, Cfr family [Escherichia coli O157:H7 str.
TW14588]
gi|254593863|gb|ACT73224.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|290763611|gb|ADD57572.1| Radical SAM enzyme, Cfr family [Escherichia coli O55:H7 str.
CB9615]
gi|320188850|gb|EFW63509.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EC1212]
gi|320640861|gb|EFX10349.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. G5101]
gi|320657195|gb|EFX25004.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662801|gb|EFX30133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667605|gb|EFX34520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. LSU-61]
gi|326340315|gb|EGD64119.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1125]
gi|326344999|gb|EGD68743.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. 1044]
gi|374359876|gb|AEZ41583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O55:H7 str. RM12579]
gi|377892857|gb|EHU57297.1| 23S rRNA methyltransferase [Escherichia coli DEC3B]
gi|377893024|gb|EHU57463.1| 23S rRNA methyltransferase [Escherichia coli DEC3A]
gi|377904850|gb|EHU69128.1| 23S rRNA methyltransferase [Escherichia coli DEC3C]
gi|377909370|gb|EHU73572.1| 23S rRNA methyltransferase [Escherichia coli DEC3D]
gi|377911602|gb|EHU75771.1| 23S rRNA methyltransferase [Escherichia coli DEC3E]
gi|377926339|gb|EHU90274.1| 23S rRNA methyltransferase [Escherichia coli DEC4A]
gi|377929819|gb|EHU93707.1| 23S rRNA methyltransferase [Escherichia coli DEC4B]
gi|377941470|gb|EHV05210.1| 23S rRNA methyltransferase [Escherichia coli DEC4D]
gi|377941897|gb|EHV05634.1| 23S rRNA methyltransferase [Escherichia coli DEC4C]
gi|377947564|gb|EHV11231.1| 23S rRNA methyltransferase [Escherichia coli DEC4E]
gi|377956797|gb|EHV20340.1| 23S rRNA methyltransferase [Escherichia coli DEC4F]
gi|377960009|gb|EHV23500.1| 23S rRNA methyltransferase [Escherichia coli DEC5A]
gi|377966695|gb|EHV30106.1| 23S rRNA methyltransferase [Escherichia coli DEC5B]
gi|377974021|gb|EHV37350.1| 23S rRNA methyltransferase [Escherichia coli DEC5C]
gi|377975494|gb|EHV38815.1| 23S rRNA methyltransferase [Escherichia coli DEC5D]
gi|377983984|gb|EHV47225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC5E]
gi|386797169|gb|AFJ30203.1| hypothetical protein CDCO157_3146 [Escherichia coli Xuzhou21]
gi|390641137|gb|EIN20569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1996]
gi|390642796|gb|EIN22185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA517]
gi|390643584|gb|EIN22923.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA505]
gi|390659994|gb|EIN37731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93-001]
gi|390661281|gb|EIN38940.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1985]
gi|390663150|gb|EIN40675.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1990]
gi|390676911|gb|EIN52989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA3]
gi|390680262|gb|EIN56117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA5]
gi|390683370|gb|EIN59066.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA9]
gi|390695826|gb|EIN70337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA10]
gi|390700278|gb|EIN74589.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA15]
gi|390700773|gb|EIN75054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA14]
gi|390714072|gb|EIN86986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA22]
gi|390722140|gb|EIN94829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA25]
gi|390723591|gb|EIN96179.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA24]
gi|390726602|gb|EIN99040.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA28]
gi|390741778|gb|EIO12832.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA31]
gi|390742188|gb|EIO13204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA32]
gi|390744873|gb|EIO15714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA33]
gi|390757929|gb|EIO27399.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA40]
gi|390766958|gb|EIO36067.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA41]
gi|390768085|gb|EIO37133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA39]
gi|390768492|gb|EIO37523.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA42]
gi|390789669|gb|EIO57118.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10246]
gi|390789917|gb|EIO57346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW07945]
gi|390795870|gb|EIO63147.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW11039]
gi|390805318|gb|EIO72265.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09098]
gi|390807084|gb|EIO73986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09109]
gi|390815647|gb|EIO82175.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW10119]
gi|390825447|gb|EIO91366.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4203]
gi|390830043|gb|EIO95620.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW09195]
gi|390830323|gb|EIO95870.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4196]
gi|390845594|gb|EIP09222.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14301]
gi|390845920|gb|EIP09540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW14313]
gi|390850195|gb|EIP13583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4421]
gi|390860947|gb|EIP23229.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4422]
gi|390864877|gb|EIP26946.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4013]
gi|390870141|gb|EIP31700.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4402]
gi|390878151|gb|EIP39026.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4439]
gi|390883252|gb|EIP43694.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4436]
gi|390892968|gb|EIP52538.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4437]
gi|390895493|gb|EIP54958.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4448]
gi|390899676|gb|EIP58912.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1738]
gi|390907626|gb|EIP66479.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1734]
gi|390918711|gb|EIP77100.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1863]
gi|390919983|gb|EIP78303.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1845]
gi|408064418|gb|EKG98900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA7]
gi|408066327|gb|EKH00786.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK920]
gi|408069884|gb|EKH04266.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA34]
gi|408079126|gb|EKH13254.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA506]
gi|408082592|gb|EKH16558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA507]
gi|408091003|gb|EKH24240.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FDA504]
gi|408097395|gb|EKH30294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1999]
gi|408103694|gb|EKH36024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK1997]
gi|408108272|gb|EKH40289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE1487]
gi|408114578|gb|EKH46104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE037]
gi|408120612|gb|EKH51588.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK2001]
gi|408127157|gb|EKH57661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA4]
gi|408137512|gb|EKH67213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA23]
gi|408139658|gb|EKH69255.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA49]
gi|408145800|gb|EKH74950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA45]
gi|408154833|gb|EKH83163.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TT12B]
gi|408159595|gb|EKH87648.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
MA6]
gi|408163444|gb|EKH91310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5905]
gi|408173198|gb|EKI00244.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CB7326]
gi|408179707|gb|EKI06361.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC96038]
gi|408217248|gb|EKI41524.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA38]
gi|408226812|gb|EKI50436.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1735]
gi|408238066|gb|EKI60901.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1736]
gi|408241903|gb|EKI64508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1737]
gi|408246285|gb|EKI68583.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1846]
gi|408255119|gb|EKI76582.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1847]
gi|408258550|gb|EKI79810.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1848]
gi|408265069|gb|EKI85824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1849]
gi|408273788|gb|EKI93828.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1850]
gi|408276720|gb|EKI96604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1856]
gi|408285847|gb|EKJ04830.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1862]
gi|408290654|gb|EKJ09358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1864]
gi|408307381|gb|EKJ24722.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1868]
gi|408307662|gb|EKJ24991.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1866]
gi|408318662|gb|EKJ34865.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1869]
gi|408324647|gb|EKJ40573.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1870]
gi|408325783|gb|EKJ41628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NE098]
gi|408336060|gb|EKJ50859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FRIK523]
gi|408345977|gb|EKJ60288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1304]
gi|408549146|gb|EKK26508.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4870]
gi|408549414|gb|EKK26775.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
5.2239]
gi|408550426|gb|EKK27755.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
6.0172]
gi|408568610|gb|EKK44639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0586]
gi|408578467|gb|EKK53985.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0833]
gi|408580912|gb|EKK56285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.2524]
gi|408590986|gb|EKK65438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0869]
gi|408596065|gb|EKK70257.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.0221]
gi|408600699|gb|EKK74532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0416]
gi|408612240|gb|EKK85585.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
10.0821]
gi|427204361|gb|EKV74638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1042]
gi|427206414|gb|EKV76627.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
89.0511]
gi|427208158|gb|EKV78295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
88.1467]
gi|427220501|gb|EKV89421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0091]
gi|427223956|gb|EKV92681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.2281]
gi|427227705|gb|EKV96236.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
90.0039]
gi|427241486|gb|EKW08917.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0056]
gi|427242015|gb|EKW09434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
93.0055]
gi|427245645|gb|EKW12926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
94.0618]
gi|427260560|gb|EKW26543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0183]
gi|427261065|gb|EKW27015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0943]
gi|427264277|gb|EKW29967.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.1288]
gi|427276138|gb|EKW40717.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0428]
gi|427278860|gb|EKW43315.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0427]
gi|427282992|gb|EKW47230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0939]
gi|427291472|gb|EKW54874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0932]
gi|427298976|gb|EKW61966.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0107]
gi|427300130|gb|EKW63082.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0003]
gi|427311965|gb|EKW74135.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.1742]
gi|427315043|gb|EKW77058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0007]
gi|427319322|gb|EKW81144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0672]
gi|427327390|gb|EKW88779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0678]
gi|427328850|gb|EKW90201.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0713]
gi|429253334|gb|EKY37824.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
96.0109]
gi|429254905|gb|EKY39262.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
97.0010]
gi|444537779|gb|ELV17688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0814]
gi|444539340|gb|ELV19106.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
09BKT078844]
gi|444547149|gb|ELV25777.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0815]
gi|444556973|gb|ELV34338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0839]
gi|444557764|gb|ELV35089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0816]
gi|444563079|gb|ELV40114.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0848]
gi|444571589|gb|ELV48065.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1775]
gi|444572591|gb|ELV49013.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1753]
gi|444578977|gb|ELV54998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1793]
gi|444592927|gb|ELV68165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA11]
gi|444593198|gb|ELV68429.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 700728]
gi|444594770|gb|ELV69925.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1805]
gi|444606370|gb|ELV80989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA13]
gi|444606775|gb|ELV81381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA19]
gi|444615314|gb|ELV89520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA2]
gi|444622836|gb|ELV96780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA47]
gi|444623680|gb|ELV97597.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA48]
gi|444629354|gb|ELW03058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA8]
gi|444638195|gb|ELW11546.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
7.1982]
gi|444640520|gb|ELW13779.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1781]
gi|444644880|gb|ELW17975.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.1762]
gi|444653968|gb|ELW26663.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
PA35]
gi|444659371|gb|ELW31789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3.4880]
gi|444663956|gb|ELW36160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
95.0083]
gi|444669407|gb|ELW41390.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
99.0670]
Length = 384
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|410479374|ref|YP_006767011.1| radical SAM family protein [Leptospirillum ferriphilum ML-04]
gi|406774626|gb|AFS54051.1| putative radical SAM family protein [Leptospirillum ferriphilum
ML-04]
Length = 379
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ LV ++ ++T F +S +RITVST G+ I + +NLAVSL A
Sbjct: 177 MGEPLANFDHLVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +++R +MP +R P+ +++A + Y ++Q+I EY++L GVND E A +L +LL
Sbjct: 237 PTEELRENLMPISRHHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLL 296
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F+ VNLIPFNP S + D+V FQ+IL + + T+R G+DI GACGQ
Sbjct: 297 APFRSKVNLIPFNPYPG-SPYHRPDKDRVRRFQEILL-AKGVTATLRTTRGEDILGACGQ 354
Query: 180 LVVNLPDKISAKST 193
L ++ ++ +S+
Sbjct: 355 LALSPSPALTMESS 368
>gi|395235042|ref|ZP_10413262.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
gi|394730327|gb|EJF30185.1| ribosomal RNA large subunit methyltransferase N [Enterobacter sp.
Ag1]
Length = 387
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 181 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 239
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E + A++ Y + S Q ++ +EY++LD VND +HAHQL
Sbjct: 240 PTDDIRDEIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHVNDGTEHAHQLA 299
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 300 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 357
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 358 CGQLAGEVIDR 368
>gi|457094952|gb|EMG25447.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
parauberis KRS-02083]
Length = 361
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 116/192 (60%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYTNVMKFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSQIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAD 279
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + VNLIP+NP+ Q+ S ++VS+F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLCYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKT-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDK 187
ACGQL N K
Sbjct: 339 ACGQLRSNTMKK 350
>gi|312973242|ref|ZP_07787414.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
gi|310331837|gb|EFP99072.1| UPF0063 protein yfgB [Escherichia coli 1827-70]
Length = 339
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 133 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 191
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 192 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 251
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 252 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 309
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 310 CGQLAGDVIDR 320
>gi|329117105|ref|ZP_08245822.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
2020]
gi|333905387|ref|YP_004479258.1| radical SAM protein [Streptococcus parauberis KCTC 11537]
gi|326907510|gb|EGE54424.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parauberis NCFD
2020]
gi|333120652|gb|AEF25586.1| radical SAM superfamily protein [Streptococcus parauberis KCTC
11537]
gi|456371366|gb|EMF50262.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
parauberis KRS-02109]
Length = 361
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 116/192 (60%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYTNVMKFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSQIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAD 279
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + VNLIP+NP+ Q+ S ++VS+F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLCYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKT-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDK 187
ACGQL N K
Sbjct: 339 ACGQLRSNTMKK 350
>gi|333384068|ref|ZP_08475712.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
ATCC BAA-286]
gi|332826949|gb|EGJ99746.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas gadei
ATCC BAA-286]
Length = 335
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 114/183 (62%), Gaps = 8/183 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY L + + IMT G+ + SPKRITVST G+ + +F D +LA+S+
Sbjct: 148 MGEPLDNYEQLKKTLEIMTADYGMAW--SPKRITVSTTGVTPKLKRFL-DESNAHLAISI 204
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H+P ++ R IMPA +AFP+ +M+ LKEY Q+++ EYIM D ND HA +L +
Sbjct: 205 HSPEKEQRLSIMPAEKAFPIAGVMDLLKEYDWTKQRRLSFEYIMFDNFNDSLVHAKELAQ 264
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L + VNLI F+ I +V+ +TS+ +K+ +F+ L S + +T+R G+DI AC
Sbjct: 265 MLRGIECRVNLIRFHAIPNVN-LKTSTKEKMEAFRDYLT-SKGVTSTIRASRGEDIFAAC 322
Query: 178 GQL 180
G L
Sbjct: 323 GML 325
>gi|16765845|ref|NP_461460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167991834|ref|ZP_02572933.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197263041|ref|ZP_03163115.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|374981957|ref|ZP_09723279.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|378445942|ref|YP_005233574.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378451265|ref|YP_005238624.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700426|ref|YP_005182383.1| hypothetical protein SL1344_2487 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378985084|ref|YP_005248239.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378989905|ref|YP_005253069.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|379701754|ref|YP_005243482.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497213|ref|YP_005397902.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|417540943|ref|ZP_12192814.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|81594911|sp|Q8ZN52.1|RLMN_SALTY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|16421069|gb|AAL21419.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|197241296|gb|EDY23916.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329931|gb|EDZ16695.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247721|emb|CBG25549.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994643|gb|ACY89528.1| hypothetical protein STM14_3097 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159074|emb|CBW18588.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913512|dbj|BAJ37486.1| 23S rRNA methyltransferase N [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222774|gb|EFX47845.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323130853|gb|ADX18283.1| radical SAM superfamily protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332989452|gb|AEF08435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
gi|353661724|gb|EHD00962.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Wandsworth str. A4-580]
gi|380464034|gb|AFD59437.1| hypothetical protein UMN798_2724 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
Length = 388
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|213028233|ref|ZP_03342680.1| hypothetical protein Salmonelentericaenterica_40390 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 356
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 150 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 208
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 209 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 268
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 269 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 326
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 327 CGQLAGDVIDR 337
>gi|417392623|ref|ZP_12155396.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
gi|353611246|gb|EHC63965.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Minnesota
str. A4-603]
Length = 363
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 157 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 216 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 275
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 276 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 333
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 334 CGQLAGDVIDR 344
>gi|384544133|ref|YP_005728196.1| protein yfgB [Shigella flexneri 2002017]
gi|281601919|gb|ADA74903.1| protein yfgB [Shigella flexneri 2002017]
Length = 340
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 134 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 192
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 193 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 252
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 253 ELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 310
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 311 CGQLAGDVIDR 321
>gi|206601630|gb|EDZ38113.1| Putative radical SAM family protein [Leptospirillum sp. Group II
'5-way CG']
Length = 379
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 3/194 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ LV ++ ++T F +S +RITVST G+ I + +NLAVSL A
Sbjct: 177 MGEPLANFDHLVRSLAVLTSPEGFGLSSRRITVSTSGLAGRIRDLGTSGIAVNLAVSLSA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +++R +MP +R P+ +++A + Y ++Q+I EY++L GVND E A +L +LL
Sbjct: 237 PTEELRENLMPISRHHPIRSILSACRAYPLRNRQRITFEYVLLGGVNDGEGQARELARLL 296
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F+ VNLIPFNP S + D+V FQ+IL + + T+R G+DI GACGQ
Sbjct: 297 APFRSKVNLIPFNPYPG-SPYHRPDKDRVRRFQEILL-AKGVTATLRTTRGEDILGACGQ 354
Query: 180 LVVNLPDKISAKST 193
L ++ ++ +S+
Sbjct: 355 LALSPSPALTMESS 368
>gi|417384855|ref|ZP_12150096.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353607512|gb|EHC61371.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
Length = 353
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 147 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 205
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 206 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 265
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 266 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 323
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 324 CGQLAGDVIDR 334
>gi|422031852|ref|ZP_16377997.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|427552549|ref|ZP_18928490.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|427569106|ref|ZP_18933208.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|427589368|ref|ZP_18938001.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|427612789|ref|ZP_18942863.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|427637095|ref|ZP_18947765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|427656844|ref|ZP_18952524.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|427662098|ref|ZP_18957436.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|427672719|ref|ZP_18962252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
gi|414017601|gb|EKT01308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm8]
gi|414018305|gb|EKT01968.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm2]
gi|414031052|gb|EKT14130.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm9]
gi|414032534|gb|EKT15537.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm3]
gi|414035751|gb|EKT18608.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm4]
gi|414045819|gb|EKT28186.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm10]
gi|414046455|gb|EKT28782.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm6]
gi|414051403|gb|EKT33506.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm11]
gi|414058564|gb|EKT40224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm12]
Length = 388
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|417703098|ref|ZP_12352209.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
gi|333001958|gb|EGK21524.1| hypothetical protein SFK218_3513 [Shigella flexneri K-218]
Length = 336
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 130 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 188
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 189 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 248
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 249 ELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 306
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 307 CGQLAGDVIDR 317
>gi|417609142|ref|ZP_12259645.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
gi|345358351|gb|EGW90539.1| hypothetical protein ECSTECDG1313_3549 [Escherichia coli
STEC_DG131-3]
Length = 336
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 130 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 188
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 189 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 248
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 249 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 306
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 307 CGQLAGDVIDR 317
>gi|197249479|ref|YP_002147478.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|440765905|ref|ZP_20944916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|440766943|ref|ZP_20945929.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
gi|440773642|ref|ZP_20952535.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|254807201|sp|B5F1A0.1|RLMN_SALA4 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197213182|gb|ACH50579.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|436411112|gb|ELP09066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH11G1113]
gi|436415369|gb|ELP13289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH10GFN094]
gi|436421442|gb|ELP19287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Agona str. SH08SF124]
Length = 388
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|121998570|ref|YP_001003357.1| radical SAM protein [Halorhodospira halophila SL1]
gi|205829772|sp|A1WXZ3.1|RLMN_HALHL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121589975|gb|ABM62555.1| 23S rRNA m(2)A-2503 methyltransferase [Halorhodospira halophila
SL1]
Length = 359
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 117/198 (59%), Gaps = 5/198 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++ A R+ T F +S +R+T+ST G+VHAI + + ++LAVSLHA
Sbjct: 165 MGEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQR-VTDVSLAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P R PLE+L+ A Y + ++I EY+MLDGVND+++HA +L +
Sbjct: 224 PNNELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQR 283
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP RT D +V F L + + T+R+ G DI GACG
Sbjct: 284 LRGIPSKVNLIPFNPYPGARYGRT-PDRQVRRFADRLL-EHGLTATIRETRGDDIDGACG 341
Query: 179 QLVVNLPDKISAKSTPPV 196
QLV + D ++K P
Sbjct: 342 QLVGEIRDARASKVARPA 359
>gi|24113846|ref|NP_708356.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2a str. 301]
gi|30063909|ref|NP_838080.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110806448|ref|YP_689968.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5 str. 8401]
gi|415853757|ref|ZP_11529687.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
gi|417723907|ref|ZP_12372711.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
gi|417729442|ref|ZP_12378140.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
gi|417734404|ref|ZP_12383055.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
gi|417739388|ref|ZP_12387967.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
gi|417744409|ref|ZP_12392935.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|418257523|ref|ZP_12881191.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
gi|420342843|ref|ZP_14844316.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-404]
gi|420374403|ref|ZP_14874393.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|424838843|ref|ZP_18263480.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5a str. M90T]
gi|81723142|sp|Q83K42.1|RLMN_SHIFL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123342626|sp|Q0T202.1|RLMN_SHIF8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24052937|gb|AAN44063.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042165|gb|AAP17890.1| hypothetical protein S2735 [Shigella flexneri 2a str. 2457T]
gi|110615996|gb|ABF04663.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|313651003|gb|EFS15403.1| UPF0063 protein yfgB [Shigella flexneri 2a str. 2457T]
gi|332754204|gb|EGJ84572.1| hypothetical protein SF434370_2731 [Shigella flexneri 4343-70]
gi|332755567|gb|EGJ85931.1| hypothetical protein SFK671_3114 [Shigella flexneri K-671]
gi|332756478|gb|EGJ86829.1| hypothetical protein SF274771_3067 [Shigella flexneri 2747-71]
gi|332766350|gb|EGJ96560.1| 23S rRNA methyltransferase [Shigella flexneri 2930-71]
gi|333016202|gb|EGK35533.1| hypothetical protein SFK304_3333 [Shigella flexneri K-304]
gi|383467895|gb|EID62916.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
5a str. M90T]
gi|391265916|gb|EIQ24883.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-404]
gi|391316291|gb|EIQ73749.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
1235-66]
gi|397897145|gb|EJL13556.1| 23S rRNA methyltransferase [Shigella flexneri 6603-63]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|417335554|ref|ZP_12118355.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|417532885|ref|ZP_12187111.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
gi|353571081|gb|EHC35147.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Alachua
str. R6-377]
gi|353661789|gb|EHD00996.1| Ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Urbana str.
R8-2977]
Length = 354
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 148 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 206
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 207 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 266
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 267 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 324
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 325 CGQLAGDVIDR 335
>gi|417351020|ref|ZP_12128956.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|418512885|ref|ZP_13079121.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
gi|353569453|gb|EHC34017.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gaminara str. A4-567]
gi|366083097|gb|EHN47025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pomona str. ATCC 10729]
Length = 388
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|260869206|ref|YP_003235608.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|415822426|ref|ZP_11511054.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|417188986|ref|ZP_12012544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|417207662|ref|ZP_12019883.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|417592852|ref|ZP_12243547.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|419198017|ref|ZP_13741403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|419204532|ref|ZP_13747712.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|419222526|ref|ZP_13765447.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|419887608|ref|ZP_14408182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|419894069|ref|ZP_14414009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|420087423|ref|ZP_14599393.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
gi|420097590|ref|ZP_14608885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|257765562|dbj|BAI37057.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|323177359|gb|EFZ62947.1| hypothetical protein ECOK1180_3845 [Escherichia coli OK1180]
gi|345337027|gb|EGW69460.1| hypothetical protein EC253486_3465 [Escherichia coli 2534-86]
gi|378046574|gb|EHW08953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC8A]
gi|378047653|gb|EHW10015.1| 23S rRNA methyltransferase [Escherichia coli DEC8B]
gi|378065101|gb|EHW27251.1| 23S rRNA methyltransferase [Escherichia coli DEC8E]
gi|386192531|gb|EIH81255.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0522]
gi|386196976|gb|EIH91184.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli JB1-95]
gi|388362476|gb|EIL26483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9570]
gi|388365275|gb|EIL29078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9574]
gi|394383752|gb|EJE61339.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9634]
gi|394393294|gb|EJE69983.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H8 str. CVM9602]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|417708574|ref|ZP_12357605.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|417713570|ref|ZP_12362535.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|417718409|ref|ZP_12367306.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|417828928|ref|ZP_12475479.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|420321407|ref|ZP_14823235.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|420331866|ref|ZP_14833523.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
gi|333000705|gb|EGK20281.1| hypothetical protein SFVA6_3397 [Shigella flexneri VA-6]
gi|333002312|gb|EGK21876.1| hypothetical protein SFK272_3309 [Shigella flexneri K-272]
gi|333016135|gb|EGK35467.1| hypothetical protein SFK227_3146 [Shigella flexneri K-227]
gi|335574783|gb|EGM61101.1| 23S rRNA methyltransferase [Shigella flexneri J1713]
gi|391247478|gb|EIQ06727.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
2850-71]
gi|391251426|gb|EIQ10641.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-1770]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|332639897|pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
gi|332639898|pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|16761440|ref|NP_457057.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29140863|ref|NP_804205.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|56412596|ref|YP_149671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62181092|ref|YP_217509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161612716|ref|YP_001586681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549454|ref|ZP_02343213.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168232093|ref|ZP_02657151.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238262|ref|ZP_02663320.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243305|ref|ZP_02668237.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261436|ref|ZP_02683409.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168466724|ref|ZP_02700578.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821500|ref|ZP_02833500.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194444721|ref|YP_002041783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194448097|ref|YP_002046583.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469426|ref|ZP_03075410.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194738017|ref|YP_002115587.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197361531|ref|YP_002141167.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|198245006|ref|YP_002216589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200388216|ref|ZP_03214828.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204929473|ref|ZP_03220547.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205353624|ref|YP_002227425.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207857933|ref|YP_002244584.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213161946|ref|ZP_03347656.1| hypothetical protein Salmoneentericaenterica_18887 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213425329|ref|ZP_03358079.1| hypothetical protein SentesTyphi_06363 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213649661|ref|ZP_03379714.1| hypothetical protein SentesTy_21620 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213857325|ref|ZP_03384296.1| hypothetical protein SentesT_19305 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224582938|ref|YP_002636736.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|289825424|ref|ZP_06544661.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|375002364|ref|ZP_09726704.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|375115433|ref|ZP_09760603.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|375120078|ref|ZP_09765245.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375124474|ref|ZP_09769638.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|378954139|ref|YP_005211626.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|378958479|ref|YP_005215965.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|386592330|ref|YP_006088730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|409251192|ref|YP_006886994.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|416426049|ref|ZP_11692668.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|416431782|ref|ZP_11695884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|416438159|ref|ZP_11699368.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|416443974|ref|ZP_11703374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|416450747|ref|ZP_11707773.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|416460671|ref|ZP_11714931.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|416471027|ref|ZP_11719080.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|416481236|ref|ZP_11723220.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416493203|ref|ZP_11727876.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|416498355|ref|ZP_11730204.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416506705|ref|ZP_11734847.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|416514798|ref|ZP_11738361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|416530920|ref|ZP_11745334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|416539116|ref|ZP_11749825.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|416546116|ref|ZP_11753671.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|416552143|ref|ZP_11756872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|416560905|ref|ZP_11761460.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|416571191|ref|ZP_11766523.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|416577256|ref|ZP_11769642.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|416583531|ref|ZP_11773344.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|416591355|ref|ZP_11778359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|416599607|ref|ZP_11783766.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|416603734|ref|ZP_11785595.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|416613829|ref|ZP_11792280.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|416620343|ref|ZP_11795682.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|416628617|ref|ZP_11799739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|416637684|ref|ZP_11803589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|416648943|ref|ZP_11809479.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|416662072|ref|ZP_11815732.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|416666825|ref|ZP_11817795.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|416677344|ref|ZP_11822238.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|416697135|ref|ZP_11828110.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|416707776|ref|ZP_11832816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|416711416|ref|ZP_11835196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|416720590|ref|ZP_11842224.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|416722275|ref|ZP_11843268.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|416730102|ref|ZP_11848461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|416738011|ref|ZP_11853109.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|416750297|ref|ZP_11859691.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|416755652|ref|ZP_11862196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|416762658|ref|ZP_11866596.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|416770818|ref|ZP_11872148.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|417328050|ref|ZP_12113296.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|417342964|ref|ZP_12123639.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|417359948|ref|ZP_12134190.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|417423420|ref|ZP_12160259.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|417469081|ref|ZP_12165516.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|417512615|ref|ZP_12176894.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|417519799|ref|ZP_12181855.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|418482578|ref|ZP_13051593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|418490208|ref|ZP_13056758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|418493543|ref|ZP_13060007.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|418498467|ref|ZP_13064882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|418504940|ref|ZP_13071292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|418506586|ref|ZP_13072916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|418525948|ref|ZP_13091927.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|418762279|ref|ZP_13318409.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|418766898|ref|ZP_13322969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|418770295|ref|ZP_13326317.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|418775717|ref|ZP_13331669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|418781348|ref|ZP_13337232.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|418782848|ref|ZP_13338703.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|418790860|ref|ZP_13346629.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|418792015|ref|ZP_13347764.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|418799204|ref|ZP_13354872.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|418800818|ref|ZP_13356465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|418805483|ref|ZP_13361071.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|418814210|ref|ZP_13369730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|418818907|ref|ZP_13374371.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|418819222|ref|ZP_13374675.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|418830875|ref|ZP_13385834.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|418837560|ref|ZP_13392433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|418841940|ref|ZP_13396754.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|418843034|ref|ZP_13397838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|418850326|ref|ZP_13405043.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|418855649|ref|ZP_13410302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|418859511|ref|ZP_13414114.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|418861742|ref|ZP_13416294.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|418867652|ref|ZP_13422106.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|419729187|ref|ZP_14256147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|419735242|ref|ZP_14262125.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|419737762|ref|ZP_14264533.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|419742615|ref|ZP_14269287.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|419751225|ref|ZP_14277649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|419787826|ref|ZP_14313531.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|419795431|ref|ZP_14321030.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|421357046|ref|ZP_15807359.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|421361384|ref|ZP_15811648.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|421367137|ref|ZP_15817338.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|421372683|ref|ZP_15822831.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|421375739|ref|ZP_15825851.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|421381055|ref|ZP_15831111.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|421383737|ref|ZP_15833768.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|421388652|ref|ZP_15838640.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|421396299|ref|ZP_15846230.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|421401580|ref|ZP_15851455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|421402018|ref|ZP_15851882.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|421408915|ref|ZP_15858712.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|421413709|ref|ZP_15863461.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|421415483|ref|ZP_15865209.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|421423620|ref|ZP_15873275.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|421424832|ref|ZP_15874470.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|421429350|ref|ZP_15878947.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|421437194|ref|ZP_15886716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|421437850|ref|ZP_15887360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|421446290|ref|ZP_15895706.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|421449716|ref|ZP_15899098.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|421568827|ref|ZP_16014538.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|421576406|ref|ZP_16022005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|421581147|ref|ZP_16026694.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|421584179|ref|ZP_16029688.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|421884943|ref|ZP_16316147.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|436622893|ref|ZP_20514792.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|436778287|ref|ZP_20521095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|436802866|ref|ZP_20525565.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|436811044|ref|ZP_20530040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|436817145|ref|ZP_20534227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|436845491|ref|ZP_20538818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|436853356|ref|ZP_20543316.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|436859555|ref|ZP_20547468.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|436863726|ref|ZP_20550021.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|436868438|ref|ZP_20553198.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|436882806|ref|ZP_20561431.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|436887164|ref|ZP_20563564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|436898919|ref|ZP_20570554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|436901142|ref|ZP_20572066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|436909403|ref|ZP_20576127.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|436921338|ref|ZP_20583741.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|436930031|ref|ZP_20588542.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|436938075|ref|ZP_20592987.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|436945340|ref|ZP_20597494.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|436949504|ref|ZP_20599485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|436960762|ref|ZP_20604399.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|436974665|ref|ZP_20611164.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|436983928|ref|ZP_20614248.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|436991132|ref|ZP_20617311.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|437007433|ref|ZP_20623286.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|437016658|ref|ZP_20626074.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|437033326|ref|ZP_20632520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|437037918|ref|ZP_20634328.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|437049624|ref|ZP_20640216.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|437054922|ref|ZP_20643222.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|437066405|ref|ZP_20649483.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|437072824|ref|ZP_20652666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|437080646|ref|ZP_20657196.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|437088891|ref|ZP_20661796.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|437111632|ref|ZP_20668219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|437118552|ref|ZP_20670386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|437133447|ref|ZP_20678420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|437139489|ref|ZP_20681822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|437143581|ref|ZP_20684405.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|437149983|ref|ZP_20688493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|437160241|ref|ZP_20694517.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|437172216|ref|ZP_20701014.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|437180343|ref|ZP_20706066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|437185725|ref|ZP_20709146.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|437206828|ref|ZP_20712554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|437262189|ref|ZP_20718909.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|437270377|ref|ZP_20723173.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|437275158|ref|ZP_20725704.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|437284176|ref|ZP_20729429.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|437315446|ref|ZP_20737135.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|437330767|ref|ZP_20741794.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|437336094|ref|ZP_20742916.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|437377383|ref|ZP_20750038.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|437420458|ref|ZP_20754632.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|437439230|ref|ZP_20757170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|437461323|ref|ZP_20762272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|437472192|ref|ZP_20765427.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|437489918|ref|ZP_20770700.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|437510806|ref|ZP_20776884.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|437524989|ref|ZP_20779556.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|437549561|ref|ZP_20783360.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|437576688|ref|ZP_20790759.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|437593491|ref|ZP_20795424.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|437606102|ref|ZP_20799636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|437613324|ref|ZP_20801508.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|437627613|ref|ZP_20805896.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|437662560|ref|ZP_20813525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|437676523|ref|ZP_20816984.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|437695092|ref|ZP_20822062.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|437713633|ref|ZP_20827513.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|437721442|ref|ZP_20829060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|437793254|ref|ZP_20837334.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|437814539|ref|ZP_20842361.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|437869053|ref|ZP_20848292.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|438100713|ref|ZP_20863980.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|438109166|ref|ZP_20867229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|438131978|ref|ZP_20873745.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|445130531|ref|ZP_21381340.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|445140334|ref|ZP_21384892.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|445150596|ref|ZP_21389812.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|445173607|ref|ZP_21396748.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|445191693|ref|ZP_21399867.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|445232237|ref|ZP_21406008.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|445275224|ref|ZP_21410560.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
gi|445334903|ref|ZP_21415283.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|445344447|ref|ZP_21417623.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|445361962|ref|ZP_21424025.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|75481689|sp|Q57LI4.1|RLMN_SALCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81362045|sp|Q5PNI4.1|RLMN_SALPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|81628152|sp|Q8Z4P2.1|RLMN_SALTI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829875|sp|A9N1Z8.1|RLMN_SALPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807202|sp|B5FR66.1|RLMN_SALDC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807203|sp|B5R584.1|RLMN_SALEP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807204|sp|B5RCZ4.1|RLMN_SALG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807205|sp|B4TD95.1|RLMN_SALHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807206|sp|B4T0Q1.1|RLMN_SALNS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807207|sp|C0PYM8.1|RLMN_SALPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807208|sp|B5BAY3.1|RLMN_SALPK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807209|sp|B4TR97.1|RLMN_SALSV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25320182|pir||AD0822 conserved hypothetical protein STY2770 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503740|emb|CAD02728.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136488|gb|AAO68054.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126853|gb|AAV76359.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128725|gb|AAX66428.1| putative Fe-S-cluster redox enzyme [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161362080|gb|ABX65848.1| hypothetical protein SPAB_00414 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403384|gb|ACF63606.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194406401|gb|ACF66620.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194455790|gb|EDX44629.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713519|gb|ACF92740.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195630780|gb|EDX49372.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197093007|emb|CAR58440.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197288805|gb|EDY28178.1| radical SAM enzyme, Cfr family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939522|gb|ACH76855.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199605314|gb|EDZ03859.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204321192|gb|EDZ06392.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205273405|emb|CAR38380.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325472|gb|EDZ13311.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205333531|gb|EDZ20295.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205337567|gb|EDZ24331.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205342014|gb|EDZ28778.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205349318|gb|EDZ35949.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206709736|emb|CAR34088.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467465|gb|ACN45295.1| hypothetical protein SPC_1129 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320087020|emb|CBY96789.1| Ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322613730|gb|EFY10669.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322619527|gb|EFY16403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322625032|gb|EFY21861.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322629525|gb|EFY26301.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634044|gb|EFY30781.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322635518|gb|EFY32229.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639806|gb|EFY36485.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644428|gb|EFY40969.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648573|gb|EFY45022.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322655207|gb|EFY51516.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658254|gb|EFY54520.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664255|gb|EFY60452.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669422|gb|EFY65571.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673149|gb|EFY69255.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676541|gb|EFY72609.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683291|gb|EFY79305.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685823|gb|EFY81816.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322715579|gb|EFZ07150.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SCSA50]
gi|323194766|gb|EFZ79954.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199546|gb|EFZ84637.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323204679|gb|EFZ89677.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323210149|gb|EFZ95050.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323217017|gb|EGA01739.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221815|gb|EGA06219.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225006|gb|EGA09261.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323229295|gb|EGA13419.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235390|gb|EGA19474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323237424|gb|EGA21487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323245178|gb|EGA29179.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248881|gb|EGA32807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253168|gb|EGA37000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255402|gb|EGA39170.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262039|gb|EGA45604.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323266350|gb|EGA49838.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269819|gb|EGA53269.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326624345|gb|EGE30690.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326628724|gb|EGE35067.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. SG9]
gi|353077052|gb|EHB42812.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353568964|gb|EHC33697.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Adelaide str. A4-669]
gi|353588033|gb|EHC47184.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Give str. S5-487]
gi|353618239|gb|EHC68978.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Mississippi str.
A4-633]
gi|353628473|gb|EHC76519.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. S5-403]
gi|353639317|gb|EHC84626.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str.
A4-543]
gi|353645696|gb|EHC89327.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Uganda str. R8-3404]
gi|357204750|gb|AET52796.1| hypothetical protein SPUL_0353 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|357955978|gb|EHJ81597.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Baildon str. R6-199]
gi|363549922|gb|EHL34253.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. LQC 10]
gi|363554248|gb|EHL38484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB31]
gi|363560874|gb|EHL45005.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. SARB30]
gi|363564855|gb|EHL48895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. ATCC
BAA710]
gi|363565051|gb|EHL49089.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 29N]
gi|363574248|gb|EHL58117.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 4441 H]
gi|363574434|gb|EHL58302.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str. 42N]
gi|366063051|gb|EHN27272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
80959-06]
gi|366064121|gb|EHN28325.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035318]
gi|366066554|gb|EHN30716.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035278]
gi|366069326|gb|EHN33450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035321]
gi|366074244|gb|EHN38308.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035320]
gi|366082645|gb|EHN46576.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
CT_02035327]
gi|366829122|gb|EHN56000.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|372205935|gb|EHP19440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008286]
gi|374352351|gb|AEZ44112.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|379985477|emb|CCF88420.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Senftenberg str. SS209]
gi|381295393|gb|EIC36507.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41563]
gi|381297517|gb|EIC38607.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41579]
gi|381303927|gb|EIC44938.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41573]
gi|381304428|gb|EIC45412.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41565]
gi|381313544|gb|EIC54326.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. 41566]
gi|383799374|gb|AFH46456.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str. B182]
gi|392612865|gb|EIW95332.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 15]
gi|392618905|gb|EIX01293.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. Levine 1]
gi|392736208|gb|EIZ93374.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35199]
gi|392737459|gb|EIZ94619.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35185]
gi|392737485|gb|EIZ94643.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21539]
gi|392747279|gb|EJA04278.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 33953]
gi|392747593|gb|EJA04589.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35188]
gi|392756896|gb|EJA13790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19447]
gi|392758392|gb|EJA15259.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21559]
gi|392764392|gb|EJA21192.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19567]
gi|392769147|gb|EJA25891.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19449]
gi|392772544|gb|EJA29245.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22513]
gi|392783226|gb|EJA39855.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 35202]
gi|392784526|gb|EJA41124.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21538]
gi|392785184|gb|EJA41765.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21550]
gi|392795144|gb|EJA51525.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 22425]
gi|392798457|gb|EJA54730.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM N1543]
gi|392800572|gb|EJA56806.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM
N18486]
gi|392807690|gb|EJA63758.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 21554]
gi|392817806|gb|EJA73708.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19443]
gi|392818939|gb|EJA74818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 37978]
gi|392820968|gb|EJA76801.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19593]
gi|392830062|gb|EJA85720.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19470]
gi|392837967|gb|EJA93534.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 19536]
gi|392839041|gb|EJA94586.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Newport str. CVM 4176]
gi|395988769|gb|EJH97915.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
640631]
gi|395992348|gb|EJI01466.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
622731-39]
gi|395993387|gb|EJI02482.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639016-6]
gi|395999599|gb|EJI08617.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-0424]
gi|396002149|gb|EJI11154.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
485549-17]
gi|396004654|gb|EJI13636.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-6]
gi|396009908|gb|EJI18823.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-26]
gi|396019635|gb|EJI28487.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-70]
gi|396020974|gb|EJI29807.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
596866-22]
gi|396021108|gb|EJI29939.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629164-37]
gi|396026474|gb|EJI35241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-50]
gi|396033294|gb|EJI42004.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
639672-46]
gi|396036341|gb|EJI45002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
78-1757]
gi|396038850|gb|EJI47484.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-1427]
gi|396047720|gb|EJI56291.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
77-2659]
gi|396050619|gb|EJI59142.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648905
5-18]
gi|396058914|gb|EJI67373.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 8b-1]
gi|396059007|gb|EJI67465.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
22510-1]
gi|396063219|gb|EJI71620.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
50-3079]
gi|396069224|gb|EJI77564.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
58-6482]
gi|396075023|gb|EJI83300.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
6-18]
gi|402518296|gb|EJW25681.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00326]
gi|402518748|gb|EJW26120.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00325]
gi|402529211|gb|EJW36450.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00322]
gi|402531242|gb|EJW38454.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Heidelberg str.
CFSAN00328]
gi|434941375|gb|ELL47826.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Pullorum str. ATCC
9120]
gi|434956970|gb|ELL50652.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS44]
gi|434960396|gb|ELL53778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE30663]
gi|434963652|gb|ELL56733.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22704]
gi|434964575|gb|ELL57573.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1882]
gi|434971594|gb|ELL64097.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1884]
gi|434978460|gb|ELL70493.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1594]
gi|434984085|gb|ELL75846.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1566]
gi|434987715|gb|ELL79347.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1580]
gi|434997209|gb|ELL88474.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1543]
gi|435003008|gb|ELL94047.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1810]
gi|435004120|gb|ELL95113.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1441]
gi|435011067|gb|ELM01804.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1558]
gi|435013335|gb|ELM03989.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1018]
gi|435021723|gb|ELM12091.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1010]
gi|435025432|gb|ELM15580.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0895]
gi|435028827|gb|ELM18887.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1729]
gi|435032855|gb|ELM22778.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0899]
gi|435034526|gb|ELM24395.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1457]
gi|435036118|gb|ELM25940.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1747]
gi|435052573|gb|ELM42064.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1444]
gi|435052668|gb|ELM42156.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1445]
gi|435053258|gb|ELM42711.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0968]
gi|435064571|gb|ELM53698.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1559]
gi|435068655|gb|ELM57666.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1808]
gi|435068842|gb|ELM57852.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1565]
gi|435077340|gb|ELM66095.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_0956]
gi|435082640|gb|ELM71252.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1811]
gi|435087918|gb|ELM76391.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1455]
gi|435096068|gb|ELM84342.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1575]
gi|435098301|gb|ELM86544.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1745]
gi|435099270|gb|ELM87481.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1725]
gi|435109508|gb|ELM97455.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1791]
gi|435112300|gb|ELN00169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CDC_2010K_1795]
gi|435116314|gb|ELN04060.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
576709]
gi|435118041|gb|ELN05722.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
635290-58]
gi|435120677|gb|ELN08242.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-19]
gi|435131377|gb|ELN18590.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607307-2]
gi|435132088|gb|ELN19289.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-16]
gi|435139666|gb|ELN26649.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
607308-9]
gi|435145216|gb|ELN32040.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_N202]
gi|435147167|gb|ELN33946.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
629163]
gi|435147658|gb|ELN34415.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
SE15-1]
gi|435149135|gb|ELN35848.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_56-3991]
gi|435159276|gb|ELN45628.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_76-3618]
gi|435162114|gb|ELN48310.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_81-2490]
gi|435171108|gb|ELN56751.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL909]
gi|435175081|gb|ELN60509.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SL913]
gi|435180911|gb|ELN66011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
638970-15]
gi|435186163|gb|ELN71012.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
CVM_69-4941]
gi|435189377|gb|ELN74011.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 17927]
gi|435197810|gb|ELN82066.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. CHS4]
gi|435201136|gb|ELN85068.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
22-17]
gi|435204110|gb|ELN87822.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 22558]
gi|435206317|gb|ELN89856.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
13183-1]
gi|435212624|gb|ELN95593.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
40-18]
gi|435220381|gb|ELO02678.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
1-1]
gi|435226424|gb|ELO08002.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
4-1]
gi|435231128|gb|ELO12386.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642046
4-7]
gi|435231948|gb|ELO13093.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648898
4-5]
gi|435243381|gb|ELO23647.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
1-17]
gi|435246744|gb|ELO26734.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648900
1-16]
gi|435248690|gb|ELO28546.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648899
3-17]
gi|435251805|gb|ELO31403.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
39-2]
gi|435256371|gb|ELO35680.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648902
6-8]
gi|435264579|gb|ELO43491.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648903
1-6]
gi|435267471|gb|ELO46169.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 653049
13-19]
gi|435276260|gb|ELO54272.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 642044
8-1]
gi|435278045|gb|ELO55921.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 561362
9-7]
gi|435285837|gb|ELO63199.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648904
3-6]
gi|435286577|gb|ELO63830.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 543463
42-20]
gi|435293060|gb|ELO69790.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
76-2651]
gi|435294461|gb|ELO71094.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 648901
16-16]
gi|435295604|gb|ELO72053.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 33944]
gi|435324984|gb|ELO96877.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
62-1976]
gi|435332743|gb|ELP03646.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
53-407]
gi|435335282|gb|ELP05555.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str.
6.0562-1]
gi|444851732|gb|ELX76818.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9184]
gi|444852360|gb|ELX77440.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. SL1438]
gi|444856755|gb|ELX81779.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Dublin str. HWS51]
gi|444859847|gb|ELX84783.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE8a]
gi|444862587|gb|ELX87435.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. SE10]
gi|444867881|gb|ELX92554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 20037]
gi|444874995|gb|ELX99227.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 18569]
gi|444880208|gb|ELY04288.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 13-1]
gi|444884408|gb|ELY08241.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. PT23]
gi|444887710|gb|ELY11400.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Enteritidis str. 436]
Length = 388
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|213580692|ref|ZP_03362518.1| hypothetical protein SentesTyph_05537 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 386
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|438030924|ref|ZP_20855304.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
gi|435327567|gb|ELO99234.1| ribosomal RNA large subunit methyltransferase N, partial
[Salmonella enterica subsp. enterica serovar Enteritidis
str. 50-5646]
Length = 371
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 165 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 224 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 283
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 284 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 342 CGQLAGDVIDR 352
>gi|432863380|ref|ZP_20087427.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
gi|431403978|gb|ELG87238.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE146]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|422732627|ref|ZP_16788958.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
gi|315161444|gb|EFU05461.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0645]
Length = 357
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMVAIDEYIEKNNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|16130442|ref|NP_417012.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependen [Escherichia
coli str. K-12 substr. MG1655]
gi|74313043|ref|YP_311462.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
Ss046]
gi|82544966|ref|YP_408913.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
Sb227]
gi|82777902|ref|YP_404251.1| hypothetical protein SDY_2713 [Shigella dysenteriae Sd197]
gi|91211843|ref|YP_541829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UTI89]
gi|110642682|ref|YP_670412.1| hypothetical protein ECP_2522 [Escherichia coli 536]
gi|117624746|ref|YP_853659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O1]
gi|157157838|ref|YP_001463839.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E24377A]
gi|170019200|ref|YP_001724154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ATCC 8739]
gi|170082127|ref|YP_001731447.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
str. K-12 substr. DH10B]
gi|170683806|ref|YP_001744705.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SMS-3-5]
gi|187731368|ref|YP_001881308.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
CDC 3083-94]
gi|188491812|ref|ZP_02999082.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|191167679|ref|ZP_03029488.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|191172618|ref|ZP_03034157.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|193064109|ref|ZP_03045194.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194427328|ref|ZP_03059878.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194437563|ref|ZP_03069659.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209919994|ref|YP_002294078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SE11]
gi|215487867|ref|YP_002330298.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O127:H6 str. E2348/69]
gi|218555042|ref|YP_002387955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI1]
gi|218559443|ref|YP_002392356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
S88]
gi|218690637|ref|YP_002398849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ED1a]
gi|218696144|ref|YP_002403811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
55989]
gi|218701027|ref|YP_002408656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
IAI39]
gi|222157223|ref|YP_002557362.1| hypothetical protein LF82_3091 [Escherichia coli LF82]
gi|237705027|ref|ZP_04535508.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238901682|ref|YP_002927478.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
BW2952]
gi|251785842|ref|YP_003000146.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253772589|ref|YP_003035420.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162491|ref|YP_003045599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli B
str. REL606]
gi|254289252|ref|YP_003055000.1| hypothetical protein ECD_02409 [Escherichia coli BL21(DE3)]
gi|260845147|ref|YP_003222925.1| enzyme [Escherichia coli O103:H2 str. 12009]
gi|260856611|ref|YP_003230502.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. 11368]
gi|293410931|ref|ZP_06654507.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|293446870|ref|ZP_06663292.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|300817713|ref|ZP_07097928.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300820813|ref|ZP_07100963.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300904309|ref|ZP_07122166.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300927120|ref|ZP_07142868.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300930157|ref|ZP_07145578.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300940232|ref|ZP_07154830.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300951778|ref|ZP_07165593.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300958853|ref|ZP_07170961.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300998073|ref|ZP_07181933.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|301022377|ref|ZP_07186264.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|301024749|ref|ZP_07188389.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|301302874|ref|ZP_07209002.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|301330392|ref|ZP_07223034.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301648272|ref|ZP_07248015.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|306814413|ref|ZP_07448575.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|307312488|ref|ZP_07592121.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|309784732|ref|ZP_07679365.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309794436|ref|ZP_07688859.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|312965433|ref|ZP_07779665.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|331643137|ref|ZP_08344272.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331648214|ref|ZP_08349304.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331653945|ref|ZP_08354946.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331658662|ref|ZP_08359606.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331664080|ref|ZP_08364990.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331669263|ref|ZP_08370111.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331673972|ref|ZP_08374735.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331678508|ref|ZP_08379183.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331684165|ref|ZP_08384761.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332278330|ref|ZP_08390743.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|378712022|ref|YP_005276915.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|383179527|ref|YP_005457532.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
53G]
gi|386281584|ref|ZP_10059246.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386594714|ref|YP_006091114.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|386600495|ref|YP_006102001.1| 2-vinyl bacteriochlorophyllide hydratase [Escherichia coli IHE3034]
gi|386603443|ref|YP_006109743.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|386609919|ref|YP_006125405.1| radical SAM protein [Escherichia coli W]
gi|386615220|ref|YP_006134886.1| hypothetical protein UMNK88_3167 [Escherichia coli UMNK88]
gi|386620124|ref|YP_006139704.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|386625254|ref|YP_006144982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|386700537|ref|YP_006164374.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|386705782|ref|YP_006169629.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|386710407|ref|YP_006174128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|387608167|ref|YP_006097023.1| radical SAM superfamily protein [Escherichia coli 042]
gi|387613113|ref|YP_006116229.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|387617833|ref|YP_006120855.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|387622217|ref|YP_006129845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|387830414|ref|YP_003350351.1| hypothetical protein ECSF_2361 [Escherichia coli SE15]
gi|388478553|ref|YP_490745.1| hypothetical protein Y75_p2470 [Escherichia coli str. K-12 substr.
W3110]
gi|407470413|ref|YP_006783144.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|407480925|ref|YP_006778074.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|410481491|ref|YP_006769037.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|414577238|ref|ZP_11434417.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|415778573|ref|ZP_11489619.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|415784568|ref|ZP_11492389.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|415803712|ref|ZP_11500691.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|415815169|ref|ZP_11506689.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|415828718|ref|ZP_11515190.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|415840204|ref|ZP_11521693.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|415844083|ref|ZP_11523887.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|415862465|ref|ZP_11535931.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|415874042|ref|ZP_11541184.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|416268576|ref|ZP_11642205.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|416283497|ref|ZP_11646839.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|416299209|ref|ZP_11652290.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|416335671|ref|ZP_11672364.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|416344049|ref|ZP_11677949.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|416898710|ref|ZP_11928256.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|417085917|ref|ZP_11953227.1| methyltransferase [Escherichia coli cloneA_i1]
gi|417115193|ref|ZP_11966329.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|417135332|ref|ZP_11980117.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|417140771|ref|ZP_11983882.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|417146392|ref|ZP_11987350.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|417155465|ref|ZP_11993594.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|417163553|ref|ZP_11998741.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|417175320|ref|ZP_12005116.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|417185071|ref|ZP_12010567.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|417221985|ref|ZP_12025425.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|417231146|ref|ZP_12032544.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|417237952|ref|ZP_12035683.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|417251892|ref|ZP_12043657.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|417261683|ref|ZP_12049171.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|417269007|ref|ZP_12056367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|417272691|ref|ZP_12060040.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|417278205|ref|ZP_12065521.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|417280820|ref|ZP_12068120.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|417286506|ref|ZP_12073795.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|417290622|ref|ZP_12077903.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|417299867|ref|ZP_12087094.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|417309002|ref|ZP_12095843.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|417582020|ref|ZP_12232822.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|417597826|ref|ZP_12248461.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|417603171|ref|ZP_12253741.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|417613983|ref|ZP_12264441.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|417619101|ref|ZP_12269515.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|417624472|ref|ZP_12274771.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|417629816|ref|ZP_12280053.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|417635489|ref|ZP_12285701.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|417640270|ref|ZP_12290411.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|417663074|ref|ZP_12312655.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|417667919|ref|ZP_12317464.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|417683190|ref|ZP_12332540.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|417756774|ref|ZP_12404848.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|417806068|ref|ZP_12453014.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|417833812|ref|ZP_12480259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|417863144|ref|ZP_12508192.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|417943679|ref|ZP_12586926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|417975814|ref|ZP_12616611.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|418041587|ref|ZP_12679806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|418267013|ref|ZP_12886456.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|418303966|ref|ZP_12915760.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|418941814|ref|ZP_13495126.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|418957110|ref|ZP_13509034.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|418997594|ref|ZP_13545188.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|419003071|ref|ZP_13550595.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|419008754|ref|ZP_13556185.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|419014428|ref|ZP_13561776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|419019446|ref|ZP_13566752.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|419024946|ref|ZP_13572172.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|419029983|ref|ZP_13577144.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|419035279|ref|ZP_13582365.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|419040669|ref|ZP_13587697.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|419143467|ref|ZP_13688205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|419149288|ref|ZP_13693941.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|419154916|ref|ZP_13699477.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|419160204|ref|ZP_13704709.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|419165320|ref|ZP_13709776.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|419171186|ref|ZP_13715072.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|419176148|ref|ZP_13719964.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|419181817|ref|ZP_13725430.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|419187264|ref|ZP_13730778.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|419192563|ref|ZP_13736015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|419210746|ref|ZP_13753823.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|419216607|ref|ZP_13759606.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|419227872|ref|ZP_13770723.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|419233595|ref|ZP_13776370.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|419238885|ref|ZP_13781600.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|419244362|ref|ZP_13787000.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|419250173|ref|ZP_13792752.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|419255999|ref|ZP_13798512.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|419262309|ref|ZP_13804723.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|419268253|ref|ZP_13810605.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|419273750|ref|ZP_13816045.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|419279050|ref|ZP_13821296.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|419285217|ref|ZP_13827388.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|419290445|ref|ZP_13832537.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|419295839|ref|ZP_13837882.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|419301234|ref|ZP_13843233.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|419307362|ref|ZP_13849261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|419312372|ref|ZP_13854234.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|419317808|ref|ZP_13859610.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|419323957|ref|ZP_13865650.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|419329946|ref|ZP_13871550.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|419335579|ref|ZP_13877104.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|419340956|ref|ZP_13882420.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|419346164|ref|ZP_13887538.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|419350624|ref|ZP_13891961.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|419356047|ref|ZP_13897304.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|419361141|ref|ZP_13902358.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|419366035|ref|ZP_13907196.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|419371001|ref|ZP_13912120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|419376450|ref|ZP_13917474.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|419381786|ref|ZP_13922736.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|419387130|ref|ZP_13928008.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|419392635|ref|ZP_13933442.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|419397620|ref|ZP_13938388.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|419402962|ref|ZP_13943686.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|419408081|ref|ZP_13948770.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|419413671|ref|ZP_13954323.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|419701361|ref|ZP_14228962.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|419803528|ref|ZP_14328698.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|419810226|ref|ZP_14335108.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|419865991|ref|ZP_14388362.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|419872747|ref|ZP_14394772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|419878645|ref|ZP_14400109.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|419885683|ref|ZP_14406371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|419899550|ref|ZP_14419053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|419906599|ref|ZP_14425489.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|419914745|ref|ZP_14433133.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|419920343|ref|ZP_14438461.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|419931193|ref|ZP_14448781.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|419939154|ref|ZP_14455955.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|419947494|ref|ZP_14463840.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|419950859|ref|ZP_14467064.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|420105077|ref|ZP_14615658.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|420111510|ref|ZP_14621341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|420113629|ref|ZP_14623350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|420119922|ref|ZP_14629165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|420124623|ref|ZP_14633470.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|420134514|ref|ZP_14642619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|420326674|ref|ZP_14828425.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|420337236|ref|ZP_14838802.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|420348433|ref|ZP_14849819.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|420353933|ref|ZP_14855033.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|420359717|ref|ZP_14860687.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|420363922|ref|ZP_14864805.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|420381539|ref|ZP_14880986.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|420386570|ref|ZP_14885919.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|420392263|ref|ZP_14891514.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|421683601|ref|ZP_16123394.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|421774685|ref|ZP_16211297.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|422333549|ref|ZP_16414559.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|422351899|ref|ZP_16432704.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|422358132|ref|ZP_16438793.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|422367766|ref|ZP_16448192.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|422377482|ref|ZP_16457721.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|422380266|ref|ZP_16460445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|422752155|ref|ZP_16806059.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|422755899|ref|ZP_16809723.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|422761951|ref|ZP_16815708.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|422767166|ref|ZP_16820893.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|422771579|ref|ZP_16825268.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|422777776|ref|ZP_16831428.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|422780582|ref|ZP_16833367.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|422787134|ref|ZP_16839873.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|422792447|ref|ZP_16845147.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|422799830|ref|ZP_16848329.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|422819331|ref|ZP_16867542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|422830004|ref|ZP_16878166.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|422835597|ref|ZP_16883651.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|422837412|ref|ZP_16885385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|422972902|ref|ZP_16975514.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|422988643|ref|ZP_16979416.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|422995535|ref|ZP_16986299.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|423000680|ref|ZP_16991434.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|423004352|ref|ZP_16995098.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|423010852|ref|ZP_17001586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|423020080|ref|ZP_17010789.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|423025246|ref|ZP_17015943.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|423031066|ref|ZP_17021754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|423038892|ref|ZP_17029566.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044012|ref|ZP_17034679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045740|ref|ZP_17036400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054279|ref|ZP_17043086.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061254|ref|ZP_17050050.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423704104|ref|ZP_17678529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|423706637|ref|ZP_17681020.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|424754455|ref|ZP_18182369.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|424764628|ref|ZP_18192047.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|425115994|ref|ZP_18517793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|425120759|ref|ZP_18522455.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|425273667|ref|ZP_18665078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|425278918|ref|ZP_18670156.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|425284212|ref|ZP_18675250.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|425289655|ref|ZP_18680495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|425301372|ref|ZP_18691263.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|425306247|ref|ZP_18695949.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|425380693|ref|ZP_18764710.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|425423361|ref|ZP_18804529.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|427805698|ref|ZP_18972765.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|427810194|ref|ZP_18977259.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|429720107|ref|ZP_19255036.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772008|ref|ZP_19304029.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429776953|ref|ZP_19308929.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785680|ref|ZP_19317576.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429791570|ref|ZP_19323425.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429792418|ref|ZP_19324268.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429798994|ref|ZP_19330793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429807507|ref|ZP_19339232.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429812407|ref|ZP_19344091.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429817928|ref|ZP_19349567.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429823140|ref|ZP_19354735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429904515|ref|ZP_19370494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908653|ref|ZP_19374617.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914524|ref|ZP_19380472.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919554|ref|ZP_19385486.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925374|ref|ZP_19391288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929311|ref|ZP_19395213.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429935850|ref|ZP_19401736.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941530|ref|ZP_19407404.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944210|ref|ZP_19410073.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429951769|ref|ZP_19417615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955118|ref|ZP_19420950.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432358858|ref|ZP_19602078.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|432363616|ref|ZP_19606780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|432370740|ref|ZP_19613825.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|432377727|ref|ZP_19620716.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|432382212|ref|ZP_19625155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|432388027|ref|ZP_19630914.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|432393029|ref|ZP_19635859.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|432398473|ref|ZP_19641252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|432407598|ref|ZP_19650306.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|432417998|ref|ZP_19660596.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|432422869|ref|ZP_19665413.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|432441983|ref|ZP_19684323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|432447089|ref|ZP_19689388.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|432450649|ref|ZP_19692911.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|432466706|ref|ZP_19708793.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|432471844|ref|ZP_19713888.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|432481867|ref|ZP_19723822.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|432486299|ref|ZP_19728214.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|432490285|ref|ZP_19732154.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|432501009|ref|ZP_19742766.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|432514823|ref|ZP_19752045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|432527279|ref|ZP_19764371.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|432544102|ref|ZP_19780944.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|432549593|ref|ZP_19786359.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|432554564|ref|ZP_19791285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|432559732|ref|ZP_19796401.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|432564807|ref|ZP_19801387.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|432574617|ref|ZP_19811095.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|432576780|ref|ZP_19813237.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|432584732|ref|ZP_19821124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|432588799|ref|ZP_19825155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|432598523|ref|ZP_19834797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|432603148|ref|ZP_19839392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|432612382|ref|ZP_19848544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|432617659|ref|ZP_19853772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|432622748|ref|ZP_19858776.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|432628141|ref|ZP_19864117.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|432637759|ref|ZP_19873628.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|432647045|ref|ZP_19882834.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|432656680|ref|ZP_19892383.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|432661728|ref|ZP_19897368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|432671622|ref|ZP_19907150.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|432675641|ref|ZP_19911097.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|432681127|ref|ZP_19916500.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|432686343|ref|ZP_19921638.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|432692465|ref|ZP_19927692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|432695336|ref|ZP_19930534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|432699951|ref|ZP_19935104.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|432705295|ref|ZP_19940394.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|432711537|ref|ZP_19946595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|432714257|ref|ZP_19949294.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|432719665|ref|ZP_19954633.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|432723993|ref|ZP_19958910.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|432728574|ref|ZP_19963452.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|432733259|ref|ZP_19968088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|432738008|ref|ZP_19972765.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|432742258|ref|ZP_19976977.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|432746516|ref|ZP_19981181.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|432750966|ref|ZP_19985568.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|432755351|ref|ZP_19989899.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|432760341|ref|ZP_19994835.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|432765875|ref|ZP_20000313.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|432771469|ref|ZP_20005794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|432779421|ref|ZP_20013654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|432788423|ref|ZP_20022553.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|432793708|ref|ZP_20027792.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|432799667|ref|ZP_20033688.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|432802712|ref|ZP_20036681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|432806697|ref|ZP_20040625.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|432810186|ref|ZP_20044079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|432816244|ref|ZP_20050027.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|432821869|ref|ZP_20055560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|432828007|ref|ZP_20061656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|432832574|ref|ZP_20066146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|432840309|ref|ZP_20073774.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|432852175|ref|ZP_20082217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|432869853|ref|ZP_20090446.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|432876262|ref|ZP_20094302.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|432895491|ref|ZP_20107211.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|432899594|ref|ZP_20110183.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|432905846|ref|ZP_20114646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|432920496|ref|ZP_20124131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|432928093|ref|ZP_20129346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|432935414|ref|ZP_20134768.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|432938859|ref|ZP_20137102.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|432948364|ref|ZP_20143520.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|432956071|ref|ZP_20147890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|432962782|ref|ZP_20152314.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|432968596|ref|ZP_20157510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|432972676|ref|ZP_20161542.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|432981896|ref|ZP_20170671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|432986233|ref|ZP_20174954.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|432991624|ref|ZP_20180288.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|433005980|ref|ZP_20194408.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|433008576|ref|ZP_20196992.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|433014799|ref|ZP_20203141.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|433024371|ref|ZP_20212352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|433029455|ref|ZP_20217311.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|433034343|ref|ZP_20222052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|433039522|ref|ZP_20227120.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|433044069|ref|ZP_20231563.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|433048933|ref|ZP_20236280.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|433063957|ref|ZP_20250876.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|433073746|ref|ZP_20260397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|433078697|ref|ZP_20265225.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|433083431|ref|ZP_20269887.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|433092891|ref|ZP_20279155.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|433097338|ref|ZP_20283521.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|433102057|ref|ZP_20288137.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|433106782|ref|ZP_20292754.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|433111758|ref|ZP_20297619.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|433121076|ref|ZP_20306746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|433131059|ref|ZP_20316494.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|433135727|ref|ZP_20321068.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|433145120|ref|ZP_20330261.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|433154598|ref|ZP_20339536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|433164411|ref|ZP_20349146.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|433169485|ref|ZP_20354110.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|433174419|ref|ZP_20358941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|433184221|ref|ZP_20368466.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|433189257|ref|ZP_20373354.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|433194574|ref|ZP_20378560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|433199174|ref|ZP_20383071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|433204186|ref|ZP_20387953.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|433322937|ref|ZP_20400326.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|442592524|ref|ZP_21010499.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442599048|ref|ZP_21016783.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443618572|ref|YP_007382428.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|450191399|ref|ZP_21891208.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
gi|450219669|ref|ZP_21896211.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|450246570|ref|ZP_21901007.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|549552|sp|P36979.1|RLMN_ECOLI RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123084401|sp|Q1R8L6.1|RLMN_ECOUT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123147826|sp|Q0TEW8.1|RLMN_ECOL5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123728531|sp|Q32D45.1|RLMN_SHIDS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123755559|sp|Q31XX3.1|RLMN_SHIBS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123773477|sp|Q3YZ35.1|RLMN_SHISS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829749|sp|A7ZPW0.1|RLMN_ECO24 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829750|sp|B1XAZ2.1|RLMN_ECODH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829752|sp|A1AE55.1|RLMN_ECOK1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829753|sp|B1IWE4.1|RLMN_ECOLC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829754|sp|B1LNH2.1|RLMN_ECOSM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829888|sp|B2TXU2.1|RLMN_SHIB3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807172|sp|B7UGW3.1|RLMN_ECO27 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807173|sp|B7MI02.1|RLMN_ECO45 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807174|sp|B7LDA9.1|RLMN_ECO55 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807176|sp|B7NRG7.1|RLMN_ECO7I RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807177|sp|B7N304.1|RLMN_ECO81 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807178|sp|B7M7M1.1|RLMN_ECO8A RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807180|sp|B6I589.1|RLMN_ECOSE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|259491986|sp|C4ZX92.1|RLMN_ECOBW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|493519|gb|AAA21359.1| unknown [Escherichia coli]
gi|1788865|gb|AAC75570.1| dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37
methyltransferase, SAM-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|1799916|dbj|BAA16404.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|73856520|gb|AAZ89227.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242050|gb|ABB62760.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246377|gb|ABB67085.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073417|gb|ABE08298.1| hypothetical protein UTI89_C2838 [Escherichia coli UTI89]
gi|110344274|gb|ABG70511.1| hypothetical protein YfgB (putative Fe-S-cluster redox enzyme)
[Escherichia coli 536]
gi|115513870|gb|ABJ01945.1| putative Fe-S-cluster redox enzyme [Escherichia coli APEC O1]
gi|157079868|gb|ABV19576.1| radical SAM enzyme, Cfr family [Escherichia coli E24377A]
gi|169754128|gb|ACA76827.1| radical SAM enzyme, Cfr family [Escherichia coli ATCC 8739]
gi|169889962|gb|ACB03669.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521524|gb|ACB19702.1| radical SAM enzyme, Cfr family [Escherichia coli SMS-3-5]
gi|187428360|gb|ACD07634.1| radical SAM enzyme, Cfr family [Shigella boydii CDC 3083-94]
gi|188487011|gb|EDU62114.1| radical SAM enzyme, Cfr family [Escherichia coli 53638]
gi|190902278|gb|EDV62018.1| radical SAM enzyme, Cfr family [Escherichia coli B7A]
gi|190907091|gb|EDV66691.1| radical SAM enzyme, Cfr family [Escherichia coli F11]
gi|192929344|gb|EDV82953.1| radical SAM enzyme, Cfr family [Escherichia coli E22]
gi|194414649|gb|EDX30921.1| radical SAM enzyme, Cfr family [Escherichia coli B171]
gi|194423369|gb|EDX39360.1| radical SAM enzyme, Cfr family [Escherichia coli 101-1]
gi|209913253|dbj|BAG78327.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215265939|emb|CAS10348.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|218352876|emb|CAU98675.1| putative Fe-S containing enzyme [Escherichia coli 55989]
gi|218361810|emb|CAQ99409.1| putative Fe-S containing enzyme [Escherichia coli IAI1]
gi|218366212|emb|CAR03960.1| putative Fe-S containing enzyme [Escherichia coli S88]
gi|218371013|emb|CAR18841.1| putative Fe-S containing enzyme [Escherichia coli IAI39]
gi|218428201|emb|CAV17847.1| putative Fe-S containing enzyme [Escherichia coli ED1a]
gi|222034228|emb|CAP76969.1| UPF0063 protein yfgB [Escherichia coli LF82]
gi|226901393|gb|EEH87652.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
3_2_53FAA]
gi|238862352|gb|ACR64350.1| predicted enzyme [Escherichia coli BW2952]
gi|242378115|emb|CAQ32888.1| 23S rRNA m[2]A2503 methyltransferase [Escherichia coli BL21(DE3)]
gi|253323633|gb|ACT28235.1| radical SAM enzyme, Cfr family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974392|gb|ACT40063.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978559|gb|ACT44229.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|257755260|dbj|BAI26762.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760294|dbj|BAI31791.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|260448403|gb|ACX38825.1| radical SAM enzyme, Cfr family [Escherichia coli DH1]
gi|281179571|dbj|BAI55901.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922467|emb|CBG35554.1| radical SAM superfamily protein [Escherichia coli 042]
gi|291323700|gb|EFE63128.1| cfr family radical SAM enzyme [Escherichia coli B088]
gi|291471399|gb|EFF13883.1| cfr family radical SAM enzyme [Escherichia coli B354]
gi|294492482|gb|ADE91238.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli IHE3034]
gi|299881276|gb|EFI89487.1| radical SAM enzyme, Cfr family [Escherichia coli MS 196-1]
gi|300304052|gb|EFJ58572.1| radical SAM enzyme, Cfr family [Escherichia coli MS 200-1]
gi|300314505|gb|EFJ64289.1| radical SAM enzyme, Cfr family [Escherichia coli MS 175-1]
gi|300396418|gb|EFJ79956.1| radical SAM enzyme, Cfr family [Escherichia coli MS 69-1]
gi|300403741|gb|EFJ87279.1| radical SAM enzyme, Cfr family [Escherichia coli MS 84-1]
gi|300416890|gb|EFK00201.1| radical SAM enzyme, Cfr family [Escherichia coli MS 182-1]
gi|300448975|gb|EFK12595.1| radical SAM enzyme, Cfr family [Escherichia coli MS 116-1]
gi|300454928|gb|EFK18421.1| radical SAM enzyme, Cfr family [Escherichia coli MS 21-1]
gi|300461963|gb|EFK25456.1| radical SAM enzyme, Cfr family [Escherichia coli MS 187-1]
gi|300526566|gb|EFK47635.1| radical SAM enzyme, Cfr family [Escherichia coli MS 119-7]
gi|300529701|gb|EFK50763.1| radical SAM enzyme, Cfr family [Escherichia coli MS 107-1]
gi|300841809|gb|EFK69569.1| radical SAM enzyme, Cfr family [Escherichia coli MS 124-1]
gi|300843621|gb|EFK71381.1| radical SAM enzyme, Cfr family [Escherichia coli MS 78-1]
gi|301073659|gb|EFK88465.1| radical SAM enzyme, Cfr family [Escherichia coli MS 146-1]
gi|305851807|gb|EFM52259.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
NC101]
gi|306907411|gb|EFN37915.1| radical SAM enzyme, Cfr family [Escherichia coli W]
gi|307625927|gb|ADN70231.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UM146]
gi|308121892|gb|EFO59154.1| radical SAM enzyme, Cfr family [Escherichia coli MS 145-7]
gi|308927102|gb|EFP72576.1| UPF0063 protein yfgB [Shigella dysenteriae 1617]
gi|309702849|emb|CBJ02180.1| radical SAM superfamily protein [Escherichia coli ETEC H10407]
gi|312289853|gb|EFR17741.1| UPF0063 protein yfgB [Escherichia coli 2362-75]
gi|312947094|gb|ADR27921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O83:H1 str. NRG 857C]
gi|315061836|gb|ADT76163.1| radical SAM protein [Escherichia coli W]
gi|315137141|dbj|BAJ44300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DH1]
gi|315256537|gb|EFU36505.1| radical SAM enzyme, Cfr family [Escherichia coli MS 85-1]
gi|315288069|gb|EFU47469.1| radical SAM enzyme, Cfr family [Escherichia coli MS 110-3]
gi|315300476|gb|EFU59705.1| radical SAM enzyme, Cfr family [Escherichia coli MS 16-3]
gi|315615776|gb|EFU96408.1| UPF0063 protein yfgB [Escherichia coli 3431]
gi|320175080|gb|EFW50193.1| Ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae CDC 74-1112]
gi|320180507|gb|EFW55438.1| Ribosomal RNA large subunit methyltransferase N [Shigella boydii
ATCC 9905]
gi|320185217|gb|EFW59997.1| Ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CDC 796-83]
gi|320196354|gb|EFW70978.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
WV_060327]
gi|320200081|gb|EFW74670.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC4100B]
gi|323156172|gb|EFZ42331.1| hypothetical protein ECEPECA14_1949 [Escherichia coli EPECa14]
gi|323159387|gb|EFZ45372.1| hypothetical protein ECE128010_4438 [Escherichia coli E128010]
gi|323169039|gb|EFZ54716.1| hypothetical protein SS53G_0580 [Shigella sonnei 53G]
gi|323170210|gb|EFZ55863.1| hypothetical protein ECLT68_5098 [Escherichia coli LT-68]
gi|323184422|gb|EFZ69797.1| hypothetical protein ECOK1357_2143 [Escherichia coli OK1357]
gi|323188365|gb|EFZ73657.1| hypothetical protein ECRN5871_3471 [Escherichia coli RN587/1]
gi|323377583|gb|ADX49851.1| radical SAM enzyme, Cfr family [Escherichia coli KO11FL]
gi|323936410|gb|EGB32700.1| cfr family protein radical SAM enzyme [Escherichia coli E1520]
gi|323941221|gb|EGB37406.1| cfr family protein radical SAM enzyme [Escherichia coli E482]
gi|323944739|gb|EGB40806.1| cfr family protein radical SAM enzyme [Escherichia coli H120]
gi|323949177|gb|EGB45068.1| cfr family protein radical SAM enzyme [Escherichia coli H252]
gi|323955758|gb|EGB51516.1| cfr family protein radical SAM enzyme [Escherichia coli H263]
gi|323961333|gb|EGB56945.1| cfr family protein radical SAM enzyme [Escherichia coli H489]
gi|323967965|gb|EGB63377.1| cfr family protein radical SAM enzyme [Escherichia coli M863]
gi|323971070|gb|EGB66318.1| cfr family protein radical SAM enzyme [Escherichia coli TA007]
gi|323977300|gb|EGB72386.1| cfr family protein radical SAM enzyme [Escherichia coli TW10509]
gi|324008525|gb|EGB77744.1| radical SAM enzyme, Cfr family [Escherichia coli MS 57-2]
gi|324011226|gb|EGB80445.1| radical SAM enzyme, Cfr family [Escherichia coli MS 60-1]
gi|324020077|gb|EGB89296.1| radical SAM enzyme, Cfr family [Escherichia coli MS 117-3]
gi|324118139|gb|EGC12036.1| cfr family protein radical SAM enzyme [Escherichia coli E1167]
gi|327252224|gb|EGE63896.1| hypothetical protein ECSTEC7V_3072 [Escherichia coli STEC_7v]
gi|330912292|gb|EGH40802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AA86]
gi|331039935|gb|EGI12155.1| radical SAM enzyme, Cfr family [Escherichia coli H736]
gi|331043074|gb|EGI15214.1| radical SAM enzyme, Cfr family [Escherichia coli M605]
gi|331048794|gb|EGI20870.1| radical SAM enzyme, Cfr family [Escherichia coli M718]
gi|331054327|gb|EGI26354.1| radical SAM enzyme, Cfr family [Escherichia coli TA206]
gi|331059879|gb|EGI31856.1| radical SAM enzyme, Cfr family [Escherichia coli TA143]
gi|331064457|gb|EGI36368.1| radical SAM enzyme, Cfr family [Escherichia coli TA271]
gi|331069245|gb|EGI40637.1| radical SAM enzyme, Cfr family [Escherichia coli TA280]
gi|331074968|gb|EGI46288.1| radical SAM enzyme, Cfr family [Escherichia coli H591]
gi|331079117|gb|EGI50319.1| radical SAM enzyme, Cfr family [Escherichia coli H299]
gi|332092803|gb|EGI97872.1| hypothetical protein SB359474_2930 [Shigella boydii 3594-74]
gi|332100682|gb|EGJ04028.1| ribosomal RNA large subunit methyltransferase N [Shigella sp. D9]
gi|332344389|gb|AEE57723.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|333970625|gb|AEG37430.1| Ribosomal RNA large subunit methyltransferase [Escherichia coli
NA114]
gi|338769630|gb|EGP24409.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
PCN033]
gi|339416064|gb|AEJ57736.1| UPF0063 protein yfgB [Escherichia coli UMNF18]
gi|340733456|gb|EGR62587.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 01-09591]
gi|340739363|gb|EGR73598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. LB226692]
gi|341916433|gb|EGT66050.1| hypothetical protein C22711_0077 [Escherichia coli O104:H4 str.
C227-11]
gi|342364541|gb|EGU28641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH140A]
gi|342930490|gb|EGU99212.1| radical SAM enzyme, Cfr family [Escherichia coli MS 79-10]
gi|344194583|gb|EGV48656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
XH001]
gi|345337791|gb|EGW70223.1| hypothetical protein ECSTECB2F1_2692 [Escherichia coli STEC_B2F1]
gi|345350837|gb|EGW83112.1| hypothetical protein ECSTEC94C_2978 [Escherichia coli STEC_94C]
gi|345352349|gb|EGW84598.1| hypothetical protein EC30301_2964 [Escherichia coli 3030-1]
gi|345362177|gb|EGW94334.1| hypothetical protein ECSTECEH250_3049 [Escherichia coli STEC_EH250]
gi|345372563|gb|EGX04527.1| hypothetical protein ECSTECMHI813_2745 [Escherichia coli
STEC_MHI813]
gi|345375815|gb|EGX07762.1| hypothetical protein ECG581_2915 [Escherichia coli G58-1]
gi|345377433|gb|EGX09365.1| hypothetical protein ECSTECH18_3233 [Escherichia coli STEC_H.1.8]
gi|345387029|gb|EGX16858.1| hypothetical protein ECSTECS1191_3417 [Escherichia coli STEC_S1191]
gi|345393272|gb|EGX23050.1| hypothetical protein ECTX1999_2984 [Escherichia coli TX1999]
gi|349738991|gb|AEQ13697.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O7:K1 str. CE10]
gi|354862370|gb|EHF22808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C236-11]
gi|354867654|gb|EHF28076.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. C227-11]
gi|354868755|gb|EHF29168.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 04-8351]
gi|354873651|gb|EHF34028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 09-7901]
gi|354880335|gb|EHF40671.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-3677]
gi|354889124|gb|EHF49377.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4404]
gi|354893354|gb|EHF53558.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4522]
gi|354894305|gb|EHF54501.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354897097|gb|EHF57258.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4623]
gi|354898461|gb|EHF58615.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354912229|gb|EHF72230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354915185|gb|EHF75165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354917419|gb|EHF77385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355350895|gb|EHG00090.1| methyltransferase [Escherichia coli cloneA_i1]
gi|359332826|dbj|BAL39273.1| predicted enzyme [Escherichia coli str. K-12 substr. MDS42]
gi|371597535|gb|EHN86356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TA124]
gi|371607191|gb|EHN95769.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B093]
gi|371612209|gb|EHO00725.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
E101]
gi|371615228|gb|EHO03656.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H397]
gi|373245520|gb|EHP64988.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
4_1_47FAA]
gi|375322871|gb|EHS68604.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H43 str. T22]
gi|377843421|gb|EHU08461.1| 23S rRNA methyltransferase [Escherichia coli DEC1A]
gi|377844272|gb|EHU09309.1| 23S rRNA methyltransferase [Escherichia coli DEC1C]
gi|377846674|gb|EHU11681.1| 23S rRNA methyltransferase [Escherichia coli DEC1B]
gi|377856396|gb|EHU21256.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC1D]
gi|377859449|gb|EHU24280.1| 23S rRNA methyltransferase [Escherichia coli DEC1E]
gi|377863730|gb|EHU28535.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC2A]
gi|377873348|gb|EHU37985.1| 23S rRNA methyltransferase [Escherichia coli DEC2B]
gi|377876983|gb|EHU41581.1| 23S rRNA methyltransferase [Escherichia coli DEC2C]
gi|377879635|gb|EHU44207.1| 23S rRNA methyltransferase [Escherichia coli DEC2D]
gi|377890709|gb|EHU55166.1| 23S rRNA methyltransferase [Escherichia coli DEC2E]
gi|377992410|gb|EHV55557.1| 23S rRNA methyltransferase [Escherichia coli DEC6B]
gi|377993980|gb|EHV57111.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6A]
gi|377995849|gb|EHV58960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6C]
gi|378007548|gb|EHV70517.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC6D]
gi|378009772|gb|EHV72726.1| 23S rRNA methyltransferase [Escherichia coli DEC6E]
gi|378015230|gb|EHV78127.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7A]
gi|378023450|gb|EHV86127.1| 23S rRNA methyltransferase [Escherichia coli DEC7C]
gi|378029256|gb|EHV91872.1| 23S rRNA methyltransferase [Escherichia coli DEC7D]
gi|378032120|gb|EHV94702.1| 23S rRNA methyltransferase [Escherichia coli DEC7B]
gi|378037916|gb|EHW00438.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC7E]
gi|378053442|gb|EHW15742.1| 23S rRNA methyltransferase [Escherichia coli DEC8C]
gi|378060798|gb|EHW22986.1| 23S rRNA methyltransferase [Escherichia coli DEC8D]
gi|378073270|gb|EHW35323.1| 23S rRNA methyltransferase [Escherichia coli DEC9A]
gi|378076654|gb|EHW38658.1| 23S rRNA methyltransferase [Escherichia coli DEC9B]
gi|378083924|gb|EHW45855.1| 23S rRNA methyltransferase [Escherichia coli DEC9C]
gi|378090298|gb|EHW52138.1| 23S rRNA methyltransferase [Escherichia coli DEC9D]
gi|378094148|gb|EHW55950.1| 23S rRNA methyltransferase [Escherichia coli DEC9E]
gi|378099465|gb|EHW61171.1| 23S rRNA methyltransferase [Escherichia coli DEC10A]
gi|378104989|gb|EHW66637.1| 23S rRNA methyltransferase [Escherichia coli DEC10B]
gi|378110904|gb|EHW72498.1| 23S rRNA methyltransferase [Escherichia coli DEC10C]
gi|378116237|gb|EHW77770.1| 23S rRNA methyltransferase [Escherichia coli DEC10D]
gi|378127751|gb|EHW89139.1| 23S rRNA methyltransferase [Escherichia coli DEC10E]
gi|378130246|gb|EHW91616.1| 23S rRNA methyltransferase [Escherichia coli DEC11A]
gi|378130561|gb|EHW91925.1| 23S rRNA methyltransferase [Escherichia coli DEC10F]
gi|378140564|gb|EHX01787.1| 23S rRNA methyltransferase [Escherichia coli DEC11B]
gi|378148345|gb|EHX09485.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11D]
gi|378150850|gb|EHX11965.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11C]
gi|378158000|gb|EHX19031.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC11E]
gi|378165033|gb|EHX25974.1| 23S rRNA methyltransferase [Escherichia coli DEC12B]
gi|378168501|gb|EHX29405.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12A]
gi|378170262|gb|EHX31148.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC12C]
gi|378181011|gb|EHX41688.1| 23S rRNA methyltransferase [Escherichia coli DEC12D]
gi|378185612|gb|EHX46237.1| 23S rRNA methyltransferase [Escherichia coli DEC13A]
gi|378187867|gb|EHX48478.1| 23S rRNA methyltransferase [Escherichia coli DEC12E]
gi|378199885|gb|EHX60344.1| 23S rRNA methyltransferase [Escherichia coli DEC13B]
gi|378200309|gb|EHX60765.1| 23S rRNA methyltransferase [Escherichia coli DEC13C]
gi|378202788|gb|EHX63215.1| 23S rRNA methyltransferase [Escherichia coli DEC13D]
gi|378212344|gb|EHX72667.1| 23S rRNA methyltransferase [Escherichia coli DEC13E]
gi|378217595|gb|EHX77874.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
DEC14A]
gi|378219173|gb|EHX79442.1| 23S rRNA methyltransferase [Escherichia coli DEC14B]
gi|378227429|gb|EHX87601.1| 23S rRNA methyltransferase [Escherichia coli DEC14C]
gi|378231657|gb|EHX91768.1| 23S rRNA methyltransferase [Escherichia coli DEC14D]
gi|378236829|gb|EHX96868.1| 23S rRNA methyltransferase [Escherichia coli DEC15A]
gi|378243741|gb|EHY03687.1| 23S rRNA methyltransferase [Escherichia coli DEC15B]
gi|378247496|gb|EHY07415.1| 23S rRNA methyltransferase [Escherichia coli DEC15C]
gi|378254460|gb|EHY14324.1| 23S rRNA methyltransferase [Escherichia coli DEC15D]
gi|378259103|gb|EHY18919.1| 23S rRNA methyltransferase [Escherichia coli DEC15E]
gi|380347562|gb|EIA35849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
SCI-07]
gi|383103950|gb|AFG41459.1| hypothetical protein P12B_c2617 [Escherichia coli P12b]
gi|383392064|gb|AFH17022.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KO11FL]
gi|383406099|gb|AFH12342.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W]
gi|383475446|gb|EID67406.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
W26]
gi|384379757|gb|EIE37624.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J53]
gi|384473440|gb|EIE57481.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AI27]
gi|385156948|gb|EIF18942.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O32:H37 str. P4]
gi|385537110|gb|EIF83993.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
M919]
gi|385707220|gb|EIG44252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H730]
gi|385711602|gb|EIG48560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
B799]
gi|386121723|gb|EIG70338.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
4_1_40B]
gi|386140612|gb|EIG81764.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2741]
gi|386153186|gb|EIH04475.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0588]
gi|386156104|gb|EIH12451.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0259]
gi|386163844|gb|EIH25639.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 1.2264]
gi|386168554|gb|EIH35070.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.0497]
gi|386172778|gb|EIH44792.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 99.0741]
gi|386178012|gb|EIH55491.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2608]
gi|386183133|gb|EIH65884.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 93.0624]
gi|386201787|gb|EII00778.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 96.154]
gi|386204145|gb|EII08656.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 5.0959]
gi|386213730|gb|EII24155.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 9.0111]
gi|386218741|gb|EII35224.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 4.0967]
gi|386224810|gb|EII47145.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.3916]
gi|386227812|gb|EII55168.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.3884]
gi|386236391|gb|EII68367.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 2.4168]
gi|386239173|gb|EII76107.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3.2303]
gi|386245149|gb|EII86879.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 3003]
gi|386249965|gb|EII96134.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli TW07793]
gi|386252944|gb|EIJ02634.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli B41]
gi|386256702|gb|EIJ12196.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 900105 (10e)]
gi|388333720|gb|EIL00337.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H2 str. CVM9450]
gi|388334450|gb|EIL01041.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9534]
gi|388336172|gb|EIL02719.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O103:H25 str. CVM9340]
gi|388348459|gb|EIL14054.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9545]
gi|388378693|gb|EIL41407.1| radical SAM enzyme, Cfr family protein [Escherichia coli O26:H11
str. CVM10026]
gi|388379687|gb|EIL42334.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9942]
gi|388384875|gb|EIL46581.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD2]
gi|388385715|gb|EIL47386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KD1]
gi|388398928|gb|EIL59739.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
541-1]
gi|388408645|gb|EIL68986.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
75]
gi|388410502|gb|EIL70726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
HM605]
gi|388415965|gb|EIL75872.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CUMT8]
gi|391250191|gb|EIQ09414.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
CCH060]
gi|391260114|gb|EIQ19179.1| ribosomal RNA large subunit methyltransferase N [Shigella flexneri
K-315]
gi|391268909|gb|EIQ27828.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
965-58]
gi|391277266|gb|EIQ36016.1| ribosomal RNA large subunit methyltransferase N [Shigella boydii
4444-74]
gi|391281287|gb|EIQ39939.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3226-85]
gi|391283880|gb|EIQ42489.1| ribosomal RNA large subunit methyltransferase N [Shigella sonnei
3233-85]
gi|391293585|gb|EIQ51844.1| 23S rRNA methyltransferase [Shigella sonnei 4822-66]
gi|391299858|gb|EIQ57797.1| ribosomal RNA large subunit methyltransferase N [Shigella
dysenteriae 225-75]
gi|391304857|gb|EIQ62659.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EPECa12]
gi|391312030|gb|EIQ69653.1| 23S rRNA methyltransferase [Escherichia coli EPEC C342-62]
gi|394396699|gb|EJE73031.1| hypothetical protein ECO10224_26979 [Escherichia coli O26:H11 str.
CVM10224]
gi|394398243|gb|EJE74431.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9553]
gi|394400229|gb|EJE76165.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O111:H11 str. CVM9455]
gi|394411219|gb|EJE85490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10021]
gi|394421284|gb|EJE94760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM9952]
gi|394430590|gb|EJF02904.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O26:H11 str. CVM10030]
gi|397785065|gb|EJK95918.1| hypothetical protein ECSTECO31_2736 [Escherichia coli STEC_O31]
gi|397899130|gb|EJL15506.1| 23S rRNA methyltransferase [Shigella sonnei str. Moseley]
gi|404337957|gb|EJZ64405.1| 23S rRNA methyltransferase [Shigella flexneri 1485-80]
gi|406776653|gb|AFS56077.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2050]
gi|407053222|gb|AFS73273.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2011C-3493]
gi|407066448|gb|AFS87495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 2009EL-2071]
gi|408192944|gb|EKI18503.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW15901]
gi|408200543|gb|EKI25720.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
ARS4.2123]
gi|408201389|gb|EKI26544.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
TW00353]
gi|408212764|gb|EKI37277.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
07798]
gi|408213030|gb|EKI37534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
3006]
gi|408227879|gb|EKI51448.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
N1]
gi|408295564|gb|EKJ13869.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
EC1865]
gi|408343253|gb|EKJ57657.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
0.1288]
gi|408460433|gb|EKJ84212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
AD30]
gi|408567706|gb|EKK43760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0566]
gi|408568509|gb|EKK44540.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
8.0569]
gi|412963880|emb|CCK47806.1| hypothetical protein BN16_31131 [Escherichia coli chi7122]
gi|412970373|emb|CCJ45019.1| hypothetical protein BN17_18041 [Escherichia coli]
gi|421933102|gb|EKT90896.1| hypothetical protein CFSAN001629_27610 [Escherichia coli O26:H11
str. CFSAN001629]
gi|421937594|gb|EKT95203.1| hypothetical protein CFSAN001630_22872 [Escherichia coli O111:H11
str. CFSAN001630]
gi|429348258|gb|EKY85028.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02092]
gi|429359004|gb|EKY95670.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02030]
gi|429361335|gb|EKY97990.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02093]
gi|429361642|gb|EKY98295.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429364282|gb|EKZ00902.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02318]
gi|429375131|gb|EKZ11669.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02913]
gi|429376288|gb|EKZ12817.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-02281]
gi|429378597|gb|EKZ15105.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03439]
gi|429379461|gb|EKZ15961.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-03943]
gi|429391164|gb|EKZ27569.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. 11-04080]
gi|429405528|gb|EKZ41794.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429406064|gb|EKZ42325.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429409969|gb|EKZ46194.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413881|gb|EKZ50061.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429420659|gb|EKZ56784.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429428831|gb|EKZ64906.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429432384|gb|EKZ68424.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429436590|gb|EKZ72606.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429438795|gb|EKZ74788.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429447164|gb|EKZ83088.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429451417|gb|EKZ87308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429458075|gb|EKZ93913.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430876278|gb|ELB99797.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE4]
gi|430884544|gb|ELC07483.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE10]
gi|430885821|gb|ELC08691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE5]
gi|430897747|gb|ELC19941.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE12]
gi|430905530|gb|ELC27139.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE16]
gi|430907687|gb|ELC29185.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE15]
gi|430914721|gb|ELC35816.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE25]
gi|430918185|gb|ELC39224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE21]
gi|430929072|gb|ELC49593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE28]
gi|430938103|gb|ELC58346.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE44]
gi|430943605|gb|ELC63712.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE178]
gi|430966437|gb|ELC83845.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE189]
gi|430973362|gb|ELC90330.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE191]
gi|430979141|gb|ELC95927.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE193]
gi|430992989|gb|ELD09348.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE205]
gi|430997586|gb|ELD13847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE206]
gi|431006389|gb|ELD21395.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE210]
gi|431015508|gb|ELD29063.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE212]
gi|431019737|gb|ELD33131.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE213]
gi|431028586|gb|ELD41630.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE216]
gi|431041209|gb|ELD51740.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE224]
gi|431063099|gb|ELD72356.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE233]
gi|431073852|gb|ELD81490.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE236]
gi|431079225|gb|ELD86195.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE237]
gi|431083229|gb|ELD89536.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE47]
gi|431090952|gb|ELD96703.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE49]
gi|431092778|gb|ELD98459.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE51]
gi|431107064|gb|ELE11252.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE55]
gi|431114454|gb|ELE17996.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE56]
gi|431115486|gb|ELE18989.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE57]
gi|431121132|gb|ELE24130.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE58]
gi|431130036|gb|ELE32145.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE62]
gi|431141722|gb|ELE43487.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE66]
gi|431148556|gb|ELE49847.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE72]
gi|431153647|gb|ELE54551.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE75]
gi|431158408|gb|ELE59007.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE76]
gi|431162752|gb|ELE63193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE77]
gi|431170499|gb|ELE70692.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE81]
gi|431179700|gb|ELE79592.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE86]
gi|431190546|gb|ELE89945.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE93]
gi|431198687|gb|ELE97470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE111]
gi|431209904|gb|ELF07971.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE119]
gi|431213448|gb|ELF11322.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE142]
gi|431219857|gb|ELF17246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE143]
gi|431221063|gb|ELF18385.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE156]
gi|431226395|gb|ELF23560.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE161]
gi|431233424|gb|ELF29015.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE162]
gi|431242177|gb|ELF36598.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE171]
gi|431242927|gb|ELF37317.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE169]
gi|431248489|gb|ELF42683.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE6]
gi|431256107|gb|ELF49184.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE8]
gi|431261858|gb|ELF53881.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE9]
gi|431264585|gb|ELF56290.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE17]
gi|431273126|gb|ELF64224.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE18]
gi|431274468|gb|ELF65525.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE45]
gi|431281797|gb|ELF72696.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE42]
gi|431283949|gb|ELF74808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE23]
gi|431291054|gb|ELF81577.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE43]
gi|431295984|gb|ELF85714.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE29]
gi|431301781|gb|ELF90982.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE22]
gi|431307995|gb|ELF96285.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE46]
gi|431310050|gb|ELF98243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE48]
gi|431313935|gb|ELG01890.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE50]
gi|431326237|gb|ELG13599.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE59]
gi|431336618|gb|ELG23726.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE65]
gi|431339371|gb|ELG26433.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE78]
gi|431342775|gb|ELG29746.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE79]
gi|431347854|gb|ELG34731.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE84]
gi|431354839|gb|ELG41565.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE91]
gi|431362954|gb|ELG49532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE101]
gi|431363659|gb|ELG50212.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE115]
gi|431367521|gb|ELG53998.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE118]
gi|431371495|gb|ELG57204.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE123]
gi|431374852|gb|ELG60197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE135]
gi|431388343|gb|ELG72079.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE140]
gi|431399431|gb|ELG82838.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE144]
gi|431410439|gb|ELG93601.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE147]
gi|431419784|gb|ELH02124.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE154]
gi|431421858|gb|ELH04070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE165]
gi|431425723|gb|ELH07791.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE192]
gi|431431917|gb|ELH13691.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE194]
gi|431441698|gb|ELH22806.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE173]
gi|431443058|gb|ELH24136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE175]
gi|431452197|gb|ELH32646.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE184]
gi|431458342|gb|ELH38679.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE196]
gi|431462845|gb|ELH43052.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE183]
gi|431466922|gb|ELH46938.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE197]
gi|431470012|gb|ELH49936.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE203]
gi|431472656|gb|ELH52543.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE202]
gi|431480814|gb|ELH60530.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE207]
gi|431491205|gb|ELH70812.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE211]
gi|431495706|gb|ELH75292.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE217]
gi|431499127|gb|ELH78308.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE215]
gi|431513678|gb|ELH91760.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE227]
gi|431523191|gb|ELI00335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE229]
gi|431529785|gb|ELI06480.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE104]
gi|431534432|gb|ELI10915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE106]
gi|431542507|gb|ELI17674.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE109]
gi|431549735|gb|ELI23811.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE112]
gi|431550634|gb|ELI24623.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE113]
gi|431555375|gb|ELI29217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE117]
gi|431563710|gb|ELI36908.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE120]
gi|431580743|gb|ELI53300.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE125]
gi|431587114|gb|ELI58495.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE129]
gi|431595821|gb|ELI65808.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE131]
gi|431601555|gb|ELI71071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE133]
gi|431609574|gb|ELI78891.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE138]
gi|431614919|gb|ELI84053.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE139]
gi|431618336|gb|ELI87310.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE145]
gi|431626490|gb|ELI95039.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE148]
gi|431627501|gb|ELI95903.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE150]
gi|431641776|gb|ELJ09510.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE157]
gi|431645856|gb|ELJ13400.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE163]
gi|431655655|gb|ELJ22686.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE166]
gi|431660749|gb|ELJ27612.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE168]
gi|431673120|gb|ELJ39350.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE176]
gi|431686686|gb|ELJ52246.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE179]
gi|431686833|gb|ELJ52389.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE180]
gi|431691631|gb|ELJ57089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE232]
gi|431705174|gb|ELJ69772.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE88]
gi|431705318|gb|ELJ69915.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE85]
gi|431715074|gb|ELJ79243.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE90]
gi|431720133|gb|ELJ84167.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE95]
gi|431720559|gb|ELJ84586.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE94]
gi|432348510|gb|ELL42960.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
J96]
gi|441607795|emb|CCP95946.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441652218|emb|CCQ02280.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|443423080|gb|AGC87984.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
APEC O78]
gi|449316974|gb|EMD07070.1| hypothetical protein C202_12205 [Escherichia coli O08]
gi|449319217|gb|EMD09272.1| hypothetical protein C201_11682 [Escherichia coli S17]
gi|449319546|gb|EMD09595.1| hypothetical protein A364_12928 [Escherichia coli SEPT362]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|424772058|ref|ZP_18199173.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
gi|421939046|gb|EKT96577.1| putative enzyme [Escherichia coli O111:H8 str. CFSAN001632]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|170767629|ref|ZP_02902082.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
gi|170123963|gb|EDS92894.1| radical SAM enzyme, Cfr family [Escherichia albertii TW07627]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|366160142|ref|ZP_09460004.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
TW09308]
gi|432373144|ref|ZP_19616182.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
gi|430895150|gb|ELC17421.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE11]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|218548046|ref|YP_002381837.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ATCC 35469]
gi|422806473|ref|ZP_16854905.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|424815430|ref|ZP_18240581.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
gi|254807182|sp|B7LKC1.1|RLMN_ESCF3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218355587|emb|CAQ88198.1| putative Fe-S containing enzyme [Escherichia fergusonii ATCC 35469]
gi|324113011|gb|EGC06987.1| cfr family protein radical SAM enzyme [Escherichia fergusonii B253]
gi|325496450|gb|EGC94309.1| ribosomal RNA large subunit methyltransferase N [Escherichia
fergusonii ECD227]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|193068396|ref|ZP_03049359.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
gi|192958348|gb|EDV88788.1| radical SAM enzyme, Cfr family [Escherichia coli E110019]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|319763716|ref|YP_004127653.1| radical sam enzyme, cfr family [Alicycliphilus denitrificans BC]
gi|317118277|gb|ADV00766.1| radical SAM enzyme, Cfr family [Alicycliphilus denitrificans BC]
Length = 374
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 11/195 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+RIM + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P R +PL++L+ A + Y +++ + I EY MLDGVND+ +HA +L L
Sbjct: 223 PNDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIAL 282
Query: 119 LET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 172
+ NLIPFNP S R S VS+F K+L + I TTVRK G D
Sbjct: 283 VSRKAADGGVSCKFNLIPFNPF-PASGLRRSPAAAVSAFAKLLSDA-GIVTTVRKTRGDD 340
Query: 173 ISGACGQLVVNLPDK 187
I ACGQL ++ D+
Sbjct: 341 IDAACGQLAGDVKDR 355
>gi|157161992|ref|YP_001459310.1| hypothetical protein EcHS_A2668 [Escherichia coli HS]
gi|205829751|sp|A8A323.1|RLMN_ECOHS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157067672|gb|ABV06927.1| radical SAM enzyme, Cfr family [Escherichia coli HS]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|451823104|ref|YP_007459378.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775904|gb|AGF46945.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 371
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 116/186 (62%), Gaps = 5/186 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+R+M + +S +RIT+ST GIV I+K D P ++LAVSLHA
Sbjct: 175 MGEPLLNYGQVIPALRLMMDDNAYSLSRRRITLSTSGIVPMIDKMAQDCP-VSLAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++MP + +PLE+L+ + K Y + + + EY ML+ +ND + HA +L +L
Sbjct: 234 PNNSLRNKLMPINKKYPLEELIKSCKNYVSRAPRDFVTFEYCMLENINDNDDHAVELIEL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ + VNLIPFN S S + SS +++ SF KIL S I TT+RK G DI ACG
Sbjct: 294 ISVLKCKVNLIPFNSFPS-SNLKRSSLNRILSFAKILNDS-GIITTIRKTRGDDILAACG 351
Query: 179 QLVVNL 184
QL N+
Sbjct: 352 QLAGNV 357
>gi|417690641|ref|ZP_12339861.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
gi|332087964|gb|EGI93089.1| hypothetical protein SB521682_2897 [Shigella boydii 5216-82]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|432835471|ref|ZP_20069009.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
gi|431384635|gb|ELG68681.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE136]
Length = 384
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|406662502|ref|ZP_11070597.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
gi|405553575|gb|EKB48780.1| Ribosomal RNA large subunit methyltransferase N [Cecembia
lonarensis LW9]
Length = 353
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++EA+ +I ++P+RIT+STVGI I K D NLA+SLH+
Sbjct: 165 MGEPLLNYNNVIEAIDKITAPEGLGMAPRRITLSTVGIPKMIKKMADDEVKFNLAISLHS 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP PLE L ALK + + +++K+ EY++ +G+ND+E+HA L K
Sbjct: 225 AINETRSRLMPINEVNPLEDLAEALKYWYQKTKRKVTYEYVIWEGINDDEKHAKALAKFC 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR +S + V + ++L I VRK GQDI ACGQ
Sbjct: 285 KIIPSKVNIIQYNPIDD-GEFRQASQEAVDMYVRVLEDQ-GIIAKVRKSRGQDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|410943443|ref|ZP_11375184.1| Fe-S-cluster redox protein [Gluconobacter frateurii NBRC 101659]
Length = 403
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 115/182 (63%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M G +S +RIT+ST G+V +++ +L G+NLA+SLHA
Sbjct: 214 MGEPLYNYDNVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDEL-GINLAISLHA 272
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
D+R QI+P R +P+E+LM A + Y S ++I EYIML GVND E A +L +L
Sbjct: 273 VTNDLRDQIVPLNRKYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRL 332
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIPFNP S F+ S+ ++++ F KI+ + + +R GQDI ACG
Sbjct: 333 IKDIPAKVNLIPFNPWPG-SDFKPSTREQLAKFAKIVMDA-GFASPIRTPRGQDILAACG 390
Query: 179 QL 180
QL
Sbjct: 391 QL 392
>gi|161502321|ref|YP_001569433.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:- str.
RSK2980]
gi|205829874|sp|A9MHL3.1|RLMN_SALAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160863668|gb|ABX20291.1| hypothetical protein SARI_00353 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 388
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|449887842|ref|ZP_21787072.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA41]
gi|449251974|gb|EMC49967.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA41]
Length = 361
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 8/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPVT 197
ACGQL N + K+T T
Sbjct: 339 ACGQLRSNTMKRDREKATAGTT 360
>gi|427799644|ref|ZP_18967554.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
gi|414064192|gb|EKT45183.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm5]
Length = 388
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|339302024|ref|ZP_08651095.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813]
gi|319744504|gb|EFV96859.1| cfr family radical SAM enzyme [Streptococcus agalactiae ATCC 13813]
Length = 374
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 177 IGEPFDNYTNVLKFLRTVNDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 234
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 235 HAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELAD 294
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 295 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDA 353
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 354 ACGQLRSN 361
>gi|156932938|ref|YP_001436854.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ATCC BAA-894]
gi|417791222|ref|ZP_12438697.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|424800635|ref|ZP_18226177.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|429116542|ref|ZP_19177460.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|429121143|ref|ZP_19181789.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449307260|ref|YP_007439616.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
gi|205829756|sp|A7MGV3.1|RLMN_CROS8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156531192|gb|ABU76018.1| hypothetical protein ESA_00741 [Cronobacter sakazakii ATCC BAA-894]
gi|333954665|gb|EGL72492.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii E899]
gi|423236356|emb|CCK08047.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 696]
gi|426319671|emb|CCK03573.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 701]
gi|426324427|emb|CCK12526.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii 680]
gi|449097293|gb|AGE85327.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii SP291]
Length = 388
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|218282588|ref|ZP_03488826.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
gi|218216459|gb|EEC89997.1| hypothetical protein EUBIFOR_01408 [Eubacterium biforme DSM 3989]
Length = 336
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 7/184 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY ++ + + GL + + IT+ST GIV I F ++ NLA+SLH
Sbjct: 149 GEPFDNYDNVMNFLATVNHDRGLG--IGSRHITISTCGIVPRIYDFANEHTQYNLAISLH 206
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP A+PL++LM A++ Y K + +++ EYI+L GVND +HA QL KL
Sbjct: 207 APNDELRDQLMPVNHAYPLKELMEAIQYYGKENNRRLTFEYILLKGVNDHPEHAKQLSKL 266
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIP+N + F++ + D+ F +L +Y +R T+RK+ G DI ACG
Sbjct: 267 LHGMNAYVNLIPYNAVDE-KGFKSVTHDEAMVFYDLLMKNY-VRCTIRKEHGNDIDAACG 324
Query: 179 QLVV 182
QL +
Sbjct: 325 QLRI 328
>gi|417476930|ref|ZP_12171284.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
gi|353639177|gb|EHC84531.1| Ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Rubislaw str. A4-653]
Length = 401
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 195 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 253
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 254 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 313
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 314 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 371
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 372 CGQLAGDVIDR 382
>gi|119476380|ref|ZP_01616731.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
gi|119450244|gb|EAW31479.1| predicted Fe-S-cluster redox enzyme [marine gamma proteobacterium
HTCC2143]
Length = 386
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 120/191 (62%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+++ +M + +S +R+T+ST G+V A++K D+ ++LA+SLHA
Sbjct: 179 MGEPLLNFDNVVQSMSLMMDDFGYGISKRRVTLSTSGVVPALDKL-GDVSEVSLAISLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R Q++P + +P+ +L+ A Y Q ++ + +EY ++ GVND +HA +L
Sbjct: 238 PNDELRSQLVPINKKYPIAELLAACGRYWAKQTDTHRVTTVEYTLIAGVNDSREHAKELA 297
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KLL+ F +NLIPFNP S+S ++ S + F ++L S +I TTVR G DI A
Sbjct: 298 KLLKDFPCKINLIPFNPF-SLSDYQRPSKKTIDQFWQVLSNS-SIVTTVRNTRGDDIDAA 355
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 356 CGQLVGQVADR 366
>gi|22536637|ref|NP_687488.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae 2603V/R]
gi|76797765|ref|ZP_00780032.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
gi|77405571|ref|ZP_00782661.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
gi|81588624|sp|Q8E1A3.1|RLMN_STRA5 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|22533475|gb|AAM99360.1|AE014212_19 conserved hypothetical protein TIGR00048 [Streptococcus agalactiae
2603V/R]
gi|76586913|gb|EAO63404.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 18RS21]
gi|77175793|gb|EAO78572.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae H36B]
Length = 368
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 171 IGEPFDNYTNVLKFLRTVNDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 229 HAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELAD 288
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDA 347
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 348 ACGQLRSN 355
>gi|242240158|ref|YP_002988339.1| ribosomal RNA large subunit methyltransferase N [Dickeya dadantii
Ech703]
gi|242132215|gb|ACS86517.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech703]
Length = 393
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + +E + A++ Y S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 363 CGQLAGEVVDR 373
>gi|389840011|ref|YP_006342095.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
gi|387850487|gb|AFJ98584.1| ribosomal RNA large subunit methyltransferase N [Cronobacter
sakazakii ES15]
Length = 388
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|429091189|ref|ZP_19153877.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
gi|429097418|ref|ZP_19159524.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426283758|emb|CCJ85637.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 582]
gi|426744313|emb|CCJ79990.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
dublinensis 1210]
Length = 388
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|429081719|ref|ZP_19144819.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
gi|426549611|emb|CCJ70860.1| Ribosomal RNA large subunit methyltransferase N [Cronobacter
condimenti 1330]
Length = 388
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|325568408|ref|ZP_08144775.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
gi|325158177|gb|EGC70330.1| cfr family radical SAM enzyme [Enterococcus casseliflavus ATCC
12755]
Length = 361
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ ++I+ GL + + ITVST G+ H I +F + +NLA+SL
Sbjct: 168 IGEPFDNYDNVMHFLQIINDPKGLA--IGARHITVSTSGLAHKIKEFAENGLQVNLAISL 225
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR +M R+FP+EKLM A+ Y + + ++I EYIMLD VND +HA QL
Sbjct: 226 HAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNRRITFEYIMLDHVNDRPEHARQLAA 285
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S V +F IL+ + I +RK+ G DI
Sbjct: 286 LLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKN-GINCVIRKEHGTDIDA 344
Query: 176 ACGQL 180
ACGQL
Sbjct: 345 ACGQL 349
>gi|452123647|ref|YP_007473895.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
gi|451912651|gb|AGF84457.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Javiana str.
CFSAN001992]
Length = 388
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLDKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|293415781|ref|ZP_06658424.1| cfr family radical SAM enzyme [Escherichia coli B185]
gi|291433429|gb|EFF06408.1| cfr family radical SAM enzyme [Escherichia coli B185]
Length = 384
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFLGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|271501574|ref|YP_003334600.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
gi|270345129|gb|ACZ77894.1| radical SAM enzyme, Cfr family [Dickeya dadantii Ech586]
Length = 392
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + +E + A++ Y S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 363 CGQLAGEVVDR 373
>gi|417122505|ref|ZP_11971763.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
gi|386147785|gb|EIG94225.1| 23S rRNA m2A2503 methyltransferase [Escherichia coli 97.0246]
Length = 384
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPCGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|257867066|ref|ZP_05646719.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257873401|ref|ZP_05653054.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257877144|ref|ZP_05656797.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
gi|257801122|gb|EEV30052.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC30]
gi|257807565|gb|EEV36387.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC10]
gi|257811310|gb|EEV40130.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
casseliflavus EC20]
Length = 361
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ ++I+ GL + + ITVST G+ H I +F + +NLA+SL
Sbjct: 168 IGEPFDNYDNVMHFLQIINDPKGLA--IGARHITVSTSGLAHKIREFAENGLQVNLAISL 225
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR +M R+FP+EKLM A+ Y + + ++I EYIMLD VND +HA QL
Sbjct: 226 HAPNNEVRTSMMRINRSFPIEKLMAAVDYYLEKTNRRITFEYIMLDHVNDRPEHARQLAA 285
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S V +F IL+ + I +RK+ G DI
Sbjct: 286 LLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKN-GINCVIRKEHGTDIDA 344
Query: 176 ACGQL 180
ACGQL
Sbjct: 345 ACGQL 349
>gi|256762921|ref|ZP_05503501.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256684172|gb|EEU23867.1| conserved hypothetical protein [Enterococcus faecalis T3]
Length = 357
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+ I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLAPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|431796136|ref|YP_007223040.1| 2-vinyl bacteriochlorophyllide hydratase [Echinicola vietnamensis
DSM 17526]
gi|430786901|gb|AGA77030.1| 23S rRNA m2A2503 methyltransferase [Echinicola vietnamensis DSM
17526]
Length = 352
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYA ++ A+ +I ++ +RIT+STVGI I K D NLA+SLH+
Sbjct: 165 MGEPLLNYANVISAIDKITAPEGLGMAARRITLSTVGIPKMIKKMADDEVKFNLAISLHS 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ R ++MP P+E+L ++LK + +Q+K+ EY++ DG+ND+E+HA L K
Sbjct: 225 AINSTRSRLMPINDKSPVEELADSLKYWYHKTQRKVTYEYVIWDGINDDEEHALALAKFC 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR +S + V + +IL G I VRK GQDI ACGQ
Sbjct: 285 KHIPSKVNIIQYNPIDE-GEFRQASQEAVDMYVRILEGR-GIVAKVRKSRGQDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|422026819|ref|ZP_16373193.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
gi|414016811|gb|EKT00570.1| ribosomal RNA large subunit methyltransferase N [Salmonella
enterica subsp. enterica serovar Typhimurium str. STm1]
Length = 388
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R+S+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGRSST-SRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|262038981|ref|ZP_06012317.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
gi|261747005|gb|EEY34508.1| radical SAM enzyme, Cfr family [Leptotrichia goodfellowii F0264]
Length = 357
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NY ++E++ I+ Q KR T+ST GIV INKF D +NLA+SLH+
Sbjct: 168 MGEPFLNYDNVIESINILNSDKGQNFSKRNFTISTSGIVPVINKFTEDENQINLAISLHS 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
D+R ++MP + + +++L AL YQK ++ +I EYI++D +N E + A +L L
Sbjct: 228 VKDDIRSELMPINKTYKVKELKEALINYQKKTKNRITFEYILIDDLNCETKDAFELMNFL 287
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+F +VNLIP+NP+ + T S K F +L+ N+ T+R+ GQDI+ ACGQ
Sbjct: 288 HSFSCLVNLIPYNPVAG-KPYSTPSKKKQREFYTLLKDK-NVNVTLRETKGQDIAAACGQ 345
Query: 180 L 180
L
Sbjct: 346 L 346
>gi|374849841|dbj|BAL52845.1| hypothetical conserved protein [uncultured gamma proteobacterium]
Length = 366
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 121/196 (61%), Gaps = 11/196 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V+A +M L + ++ +R+TVST G+ AI + +++ ++LAVSLHA
Sbjct: 163 MGEPLLNFDAVVDAAELMMDDLAYGLAKRRVTVSTAGLAPAIERL-AEISDVSLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLG 116
++R ++P R +PL++L+ A + + + +QK I EY+ML GVND + A +L
Sbjct: 222 TTDELRDLLVPINRKYPLQRLLAACRRFAGSERQKGRKITFEYVMLQGVNDADADAKRLA 281
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KLL +NLIPFNP + FR S + + FQ IL S TTVR+ G+DI+ A
Sbjct: 282 KLLSQVPAKINLIPFNPFPG-APFRCSPPETILRFQSILADS-GFLTTVRRTRGEDIAAA 339
Query: 177 CGQLVVNLPDKISAKS 192
CGQLV K++A+S
Sbjct: 340 CGQLV----GKVAARS 351
>gi|251788745|ref|YP_003003466.1| ribosomal RNA large subunit methyltransferase N [Dickeya zeae
Ech1591]
gi|247537366|gb|ACT05987.1| radical SAM enzyme, Cfr family [Dickeya zeae Ech1591]
Length = 392
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + +E + A++ Y S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 245 PTDEIRNEIMPINKKYDIETFLAAVRRYLDKSNANQGRVTVEYVMLDHINDGTEHAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 305 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 363 CGQLAGEVVDR 373
>gi|422956104|ref|ZP_16968578.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
gi|371600402|gb|EHN89176.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
H494]
Length = 384
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQ+
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQMA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|425032879|ref|ZP_18437888.1| 23S rRNA methyltransferase [Enterococcus faecium 515]
gi|403011707|gb|EJY24998.1| 23S rRNA methyltransferase [Enterococcus faecium 515]
Length = 355
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 4/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQVVV--NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + NLIP+NP+ Q+ S V F +L+ + + +RK+ G DI AC
Sbjct: 283 KDKKKLAYDNLIPYNPVSEHDQYSRSPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAAC 341
Query: 178 GQLVVNLPDKISAK 191
GQL K AK
Sbjct: 342 GQLRSKQMKKTVAK 355
>gi|429462724|ref|YP_007184187.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811522|ref|YP_007447977.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338238|gb|AFZ82661.1| 23S rRNA (adenine2503-C2)-methyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776680|gb|AGF47679.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 373
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 120/182 (65%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ ++ A+R+M + +S ++IT+ST GIV I+K +D P ++LA+SLHA
Sbjct: 177 MGEPLLNYSQVIPALRLMMDENSYALSKRKITLSTSGIVPMIDKLVNDCP-VSLAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL++LM + + Y + + I EY MLD +ND ++HA +L +L
Sbjct: 236 PNDELRDKLIPINKKYPLQELMKSCRNYVSYAPRDFITFEYCMLDNINDSDKHAFELIEL 295
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ T + +NLIPFN + S + S+ +++ SF KIL S I TTVRK G DI+ ACG
Sbjct: 296 VRTIKCKINLIPFNSFPN-SNLKRSTQNRILSFVKIL-NSQGIVTTVRKTRGDDINAACG 353
Query: 179 QL 180
QL
Sbjct: 354 QL 355
>gi|54294410|ref|YP_126825.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
gi|81368632|sp|Q5WWH4.1|RLMN_LEGPL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53754242|emb|CAH15719.1| hypothetical protein lpl1479 [Legionella pneumophila str. Lens]
Length = 382
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVIPEMERLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q++ SS + + +F+ L + I T RK G DI ACG
Sbjct: 286 LHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + DK S
Sbjct: 344 QLAGEVKDKTS 354
>gi|311278552|ref|YP_003940783.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
gi|308747747|gb|ADO47499.1| radical SAM enzyme, Cfr family [Enterobacter cloacae SCF1]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L +Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-NYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|399116783|emb|CCG19592.1| ribosomal RNA large subunit methyltransferase [Taylorella
asinigenitalis 14/45]
Length = 380
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A++++ + +S +R+TVST G++ ++K D P + LAVSLHA
Sbjct: 175 MGEPLLNYDQVLPAIKLLIDQNAYGLSKRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P + +PL +LM+A Y + + + I EYIMLDGVND + HA QL +
Sbjct: 234 PNDELRDQLIPLNKKYPLRELMDACNRYIEFAPRDFITFEYIMLDGVNDTDAHAKQLIDI 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S R SS ++V +F IL + I T RK G DI ACG
Sbjct: 294 CREVKSKVNLIPFNPFPE-SGLRRSSHERVRAFSAILNDA-GIVATTRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL ++ DK
Sbjct: 352 QLAGDIKDK 360
>gi|315640014|ref|ZP_07895140.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
gi|315484223|gb|EFU74693.1| cfr family radical SAM enzyme [Enterococcus italicus DSM 15952]
Length = 359
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 108/183 (59%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ + I+ + + ITVST G+V I +F + +NLA+SLHA
Sbjct: 168 IGEPFDNYQNVMNFLTIVNDAKGLAIGARHITVSTSGLVPKIREFAENGLQVNLAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P DVR IM R FP+EKLM+A+ Y + + ++I EYIML VND +HA QL LL
Sbjct: 228 PNNDVRTSIMRINRTFPIEKLMDAVDYYLEKTNRRITFEYIMLSHVNDRVEHAQQLADLL 287
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI AC
Sbjct: 288 KDKKKLTYVNLIPYNPVSEHDQYARSSRNDVMKFYDVLKKN-GINCVIRKEYGTDIDAAC 346
Query: 178 GQL 180
GQL
Sbjct: 347 GQL 349
>gi|256619523|ref|ZP_05476369.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|307275985|ref|ZP_07557118.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
gi|422696415|ref|ZP_16754376.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244]
gi|256599050|gb|EEU18226.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|306507315|gb|EFM76452.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX2134]
gi|315146175|gb|EFT90191.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4244]
Length = 357
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYVNVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|220935219|ref|YP_002514118.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996529|gb|ACL73131.1| radical SAM protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 376
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 117/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+A+R+M + +S +R+T+ST GIV A+++ L + LAVSLHA
Sbjct: 172 MGEPLLNFDNVVDAMRLMLDDNAYGLSKRRVTLSTSGIVPAMDRLKETL-DVALAVSLHA 230
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P R +P+ +L++A + Y ++ Q+I EY+ML+GVND +HA QL
Sbjct: 231 PNDALRDELVPINRKYPIAELLDACRRYVREERHHQRITFEYVMLEGVNDSPEHARQLIA 290
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFNP +++R S D + FQ++L + T R+ G DI AC
Sbjct: 291 LLRDVPCKINLIPFNPFPE-TRYRRSGDAAIRRFQEML-ANAGYTTITRRTRGDDIDAAC 348
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 349 GQLVGKVADR 358
>gi|26248881|ref|NP_754921.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
CFT073]
gi|227887552|ref|ZP_04005357.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300981979|ref|ZP_07175825.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|301047150|ref|ZP_07194245.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|386630287|ref|YP_006150007.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|386635207|ref|YP_006154926.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|386640048|ref|YP_006106846.1| radical SAM protein [Escherichia coli ABU 83972]
gi|422364837|ref|ZP_16445347.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|432412690|ref|ZP_19655352.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|432432766|ref|ZP_19675193.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|432437249|ref|ZP_19679637.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|432457589|ref|ZP_19699771.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|432496585|ref|ZP_19738381.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|432505328|ref|ZP_19747051.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|432524722|ref|ZP_19761849.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|432569611|ref|ZP_19806121.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|432593743|ref|ZP_19830058.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|432608411|ref|ZP_19844595.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|432652051|ref|ZP_19887804.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|432784442|ref|ZP_20018621.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|432845479|ref|ZP_20078279.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|432974678|ref|ZP_20163515.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|432996233|ref|ZP_20184819.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|433000804|ref|ZP_20189328.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|433059003|ref|ZP_20246046.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|433088210|ref|ZP_20274580.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|433116416|ref|ZP_20302205.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|433126086|ref|ZP_20311641.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|433140154|ref|ZP_20325407.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|433150071|ref|ZP_20335089.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|433208650|ref|ZP_20392324.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|433213434|ref|ZP_20397024.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|442608263|ref|ZP_21023023.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
gi|81475264|sp|Q8FF55.1|RLMN_ECOL6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|26109287|gb|AAN81489.1|AE016764_171 Hypothetical protein yfgB [Escherichia coli CFT073]
gi|227835902|gb|EEJ46368.1| Fe-S-cluster oxidoreductase [Escherichia coli 83972]
gi|300300936|gb|EFJ57321.1| radical SAM enzyme, Cfr family [Escherichia coli MS 185-1]
gi|300408874|gb|EFJ92412.1| radical SAM enzyme, Cfr family [Escherichia coli MS 45-1]
gi|307554540|gb|ADN47315.1| radical SAM enzyme [Escherichia coli ABU 83972]
gi|315292442|gb|EFU51794.1| radical SAM enzyme, Cfr family [Escherichia coli MS 153-1]
gi|355421186|gb|AER85383.1| hypothetical protein i02_2835 [Escherichia coli str. 'clone D i2']
gi|355426106|gb|AER90302.1| hypothetical protein i14_2835 [Escherichia coli str. 'clone D i14']
gi|430934545|gb|ELC54900.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE39]
gi|430952134|gb|ELC71341.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE187]
gi|430962580|gb|ELC80437.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE188]
gi|430981596|gb|ELC98323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE201]
gi|431023843|gb|ELD37038.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE214]
gi|431037678|gb|ELD48654.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE220]
gi|431051173|gb|ELD60848.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE230]
gi|431099101|gb|ELE04402.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE53]
gi|431127071|gb|ELE29386.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE60]
gi|431137355|gb|ELE39202.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE67]
gi|431189906|gb|ELE89323.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE87]
gi|431328865|gb|ELG16169.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE63]
gi|431394335|gb|ELG77871.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE141]
gi|431488410|gb|ELH68045.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE209]
gi|431505263|gb|ELH83885.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE218]
gi|431508196|gb|ELH86470.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE223]
gi|431568536|gb|ELI41509.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE124]
gi|431603987|gb|ELI73403.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE137]
gi|431633237|gb|ELJ01518.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE153]
gi|431643598|gb|ELJ11289.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE160]
gi|431659158|gb|ELJ26056.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE167]
gi|431669865|gb|ELJ36230.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE174]
gi|431729935|gb|ELJ93554.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE97]
gi|431734459|gb|ELJ97860.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE99]
gi|441710868|emb|CCQ09000.1| Ribosomal RNA large subunit methyltransferase N [Escherichia coli
Nissle 1917]
Length = 384
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLGKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|358010804|ref|ZP_09142614.1| UPF0063 protein yfgB [Acinetobacter sp. P8-3-8]
Length = 411
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 123/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDID-VALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PLE+L+ A + Y ++S++ + IEY+ML+GVND+ +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLEQLIAACQRYIGKDGNESSRKHVTIEYVMLEGVNDQPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|262371087|ref|ZP_06064409.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
gi|381197790|ref|ZP_09905129.1| putative Fe-S-cluster redox enzyme [Acinetobacter lwoffii WJ10621]
gi|262313973|gb|EEY95018.1| cfr family radical SAM enzyme [Acinetobacter johnsonii SH046]
Length = 411
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 122/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++RIM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMRIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDI-DVALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVND +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESARKHVTIEYVMLDGVNDHPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|365850692|ref|ZP_09391154.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
gi|364566893|gb|EHM44571.1| 23S rRNA m2A2503 methyltransferase [Yokenella regensburgei ATCC
43003]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|298245810|ref|ZP_06969616.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
gi|297553291|gb|EFH87156.1| radical SAM enzyme, Cfr family [Ktedonobacter racemifer DSM 44963]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 117/195 (60%), Gaps = 10/195 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY +++A+RI+ + F + + +TVSTVG+V AI K + +NLA+SLHA
Sbjct: 195 MGEPLHNYDNVLQALRILNSAAGFNLGARHMTVSTVGLVPAIRKLSQEQLQVNLAISLHA 254
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R Q MP R +PLE+L+ A ++Y +++++ EY++L GVND + A QL +LL
Sbjct: 255 PTNEARSQTMPVNRKYPLEELLAACQDYIAATRRQVTFEYVLLAGVNDTPERAQQLAELL 314
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISG 175
+ VN IP N + + +R D + +F+ IL RG I +VR + G DI+
Sbjct: 315 APLKQFAHVNCIPVN--ATSAGYRPPGPDAIRAFRNILFERG---ISNSVRAERGDDIAA 369
Query: 176 ACGQLVVNLPDKISA 190
ACGQL D+ A
Sbjct: 370 ACGQLRTRFEDRRKA 384
>gi|392980211|ref|YP_006478799.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
gi|392326144|gb|AFM61097.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. dissolvens SDM]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|423141156|ref|ZP_17128794.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379053710|gb|EHY71601.1| radical SAM enzyme, Cfr family [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND HAHQL
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTDHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|449898426|ref|ZP_21790598.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans R221]
gi|449935391|ref|ZP_21803352.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2ST1]
gi|449991945|ref|ZP_21822121.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NVAB]
gi|450117329|ref|ZP_21864935.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST1]
gi|450152999|ref|ZP_21876962.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 21]
gi|449166677|gb|EMB69604.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2ST1]
gi|449180416|gb|EMB82574.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NVAB]
gi|449226328|gb|EMC25870.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST1]
gi|449239470|gb|EMC38192.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 21]
gi|449259760|gb|EMC57279.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans R221]
Length = 361
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANERVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|401677597|ref|ZP_10809571.1| RlmN Protein [Enterobacter sp. SST3]
gi|400215120|gb|EJO46032.1| RlmN Protein [Enterobacter sp. SST3]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|401764742|ref|YP_006579749.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
gi|400176276|gb|AFP71125.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae ENHKU01]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|365971621|ref|YP_004953182.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
gi|365750534|gb|AEW74761.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae EcWSU1]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|345877760|ref|ZP_08829498.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225211|gb|EGV51576.1| hypothetical protein Rifp1Sym_be00130 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 379
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V A+ IM + +S R+T+ST GIV A+ + ++ ++LAVSLHA
Sbjct: 175 MGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLR-EVSDVSLAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P + +PLE+L+ A +++ K + ++KI EY+MLDG+ND QHA L +L
Sbjct: 234 PTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIRL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE +NLIPFNP S ++TS ++V F++ L + I + RK G+DI ACG
Sbjct: 294 LEGTPSKLNLIPFNPFPGTS-YKTSPPERVEVFRQRLMKA-GIISITRKTRGEDIDAACG 351
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 352 QLVGRVKDR 360
>gi|293557268|ref|ZP_06675815.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
gi|291600555|gb|EFF30860.1| radical SAM enzyme, Cfr family [Enterococcus faecium E1039]
Length = 355
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 112/194 (57%), Gaps = 4/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ + I+ + + ITVST G+ H I +F ++ +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMDFLHIINDAKGLAIGARHITVSTSGLAHKIKEFANNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +VR IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEVRTSIMRINRSFPIEKLMEAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ V F +L+ + + +RK+ G DI AC
Sbjct: 283 KDKKKLAYVNLIPYNPVSEHDQYSRCPKADVLRFYDVLKKN-GVNCVIRKEHGTDIDAAC 341
Query: 178 GQLVVNLPDKISAK 191
GQL K AK
Sbjct: 342 GQLRSKQMKKTVAK 355
>gi|440286596|ref|YP_007339361.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440046118|gb|AGB77176.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 388
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|407893166|ref|ZP_11152196.1| hypothetical protein Dmas2_03745 [Diplorickettsia massiliensis 20B]
Length = 315
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 123/194 (63%), Gaps = 5/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V A+ +M + S +R+T+ST GIV + K S + + LA+SLHA
Sbjct: 120 MGEPLLNFEAVVPAMNLMMDDFAYGFSKRRVTLSTSGIVPMLKKL-SQVSDVALAISLHA 178
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L+ A + Y ++S+++I +EY++LDG+ND+ HA QL ++
Sbjct: 179 PNDELRNELVPINKKYPLRELLEACRHYFSQDSRRRITMEYVLLDGINDQLHHAQQLIQI 238
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ V VNLIPFNP + +R S ++ F+ L + + T VRK GQDI ACG
Sbjct: 239 LQGISVKVNLIPFNPFPRTT-YRRSPQHQIERFRDYLLKA-GLNTIVRKTRGQDIDAACG 296
Query: 179 QLVVNLPDKISAKS 192
QLV + +++ +S
Sbjct: 297 QLVGRVKQELAEQS 310
>gi|450011770|ref|ZP_21829307.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A19]
gi|450024106|ref|ZP_21831032.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U138]
gi|449189072|gb|EMB90750.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A19]
gi|449192436|gb|EMB93858.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U138]
Length = 361
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANERVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|320546296|ref|ZP_08040616.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
gi|320449073|gb|EFW89796.1| cfr family radical SAM enzyme [Streptococcus equinus ATCC 9812]
Length = 366
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ VR + GL + + IT+ST G+ H I +F + +NLAVSL
Sbjct: 169 IGEPFDNYDNVLRFVRTINNDNGLA--IGARHITISTSGLAHKIREFAHESLQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNRRVTFEYIMLNDVNDSPENAQELAD 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ SS + V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKEHVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 346 ACGQLRSN 353
>gi|402836995|ref|ZP_10885526.1| 23S rRNA m2A2503 methyltransferase [Mogibacterium sp. CM50]
gi|402270011|gb|EJU19280.1| 23S rRNA m2A2503 methyltransferase [Mogibacterium sp. CM50]
Length = 346
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 111/181 (61%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L + + ++ + + + + ITVST G+V I +F D P +NLAVSLHA
Sbjct: 165 IGEPFDNYEGLSKFISLINSKQGYNLGMRNITVSTCGLVPMIEQFGKDFPQVNLAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D+R + MP AR + E L+ A + Y ++++++I EY ++DGVND+ +HA +L L
Sbjct: 225 PNDDIRRRTMPIARRYAYEDLITACRTYTESTKRRITFEYALIDGVNDQREHALELAGHL 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP N + + TS+ + V SF L ++I +VR+ +G DI ACGQ
Sbjct: 285 KGWLTHVNLIPLNEVDGTG-YLTSNRETVRSFAWTLE-EHSIAVSVRRTLGTDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|330824021|ref|YP_004387324.1| ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
gi|329309393|gb|AEB83808.1| Ribosomal RNA large subunit methyltransferase N [Alicycliphilus
denitrificans K601]
Length = 374
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 118/195 (60%), Gaps = 11/195 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+RIM + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYSALVPALRIMLDDHGYGLSRRRVTVSTSGVVPMMDRLGRDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P R +PL++L+ A + Y +++ + I EY MLDGVND+ +HA +L L
Sbjct: 223 PNDELRDNLVPLNRKYPLQELLAACRRYLEHAPRDFITFEYCMLDGVNDQPEHARELIAL 282
Query: 119 LET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 172
+ NLIPFNP S R S VS+F K+L + I TTVRK G D
Sbjct: 283 VSRKAADGGVSCKFNLIPFNPF-PASGLRRSPAVAVSAFAKLLSDA-GIVTTVRKTRGDD 340
Query: 173 ISGACGQLVVNLPDK 187
I ACGQL ++ D+
Sbjct: 341 IDAACGQLAGDVKDR 355
>gi|345863302|ref|ZP_08815514.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345125763|gb|EGW55631.1| ribosomal RNA large subunit methyltransferase N [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 365
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V A+ IM + +S R+T+ST GIV A+ + ++ ++LAVSLHA
Sbjct: 161 MGEPLANFDAVVTAMDIMQDDSAYMLSKYRVTISTSGIVPALRQLR-EVSDVSLAVSLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P + +PLE+L+ A +++ K + ++KI EY+MLDG+ND QHA L +L
Sbjct: 220 PTNELRDQLVPINQKYPLEELIPACRDFIKGDKRRKITWEYVMLDGINDSIQHAKALIRL 279
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE +NLIPFNP S ++TS ++V F++ L + I + RK G+DI ACG
Sbjct: 280 LEGTPSKLNLIPFNPFPGTS-YKTSPPERVEVFRQRLMKA-GIISITRKTRGEDIDAACG 337
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 338 QLVGRVKDR 346
>gi|244538894|dbj|BAH82937.1| predicted enzyme [Candidatus Ishikawaella capsulata Mpkobe]
Length = 387
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 7/193 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V ++ IM F +S +R+T+ST GIV AI K S + + LA+SLHA
Sbjct: 197 MGEPLLNVKNVVSSIHIMLDKFGFGLSKRRVTISTAGIVPAIYKLAS-MIDVGLAISLHA 255
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKN---SQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + + + L+ A+K Y +N ++ KI IEY+ML+ +ND +HAHQL
Sbjct: 256 PNDLIRDKIMPINKKYNIAMLLAAVKHYIENGVANRGKITIEYVMLNHINDSVEHAHQLA 315
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+N S R SSD +++ F KIL Y T +RK G DI A
Sbjct: 316 RLLKNIPSKINLIPWNYFKGSSYLR-SSDSQINIFAKILI-EYGFTTIIRKTRGDDIDAA 373
Query: 177 CGQLVVNLPDKIS 189
CGQL N+ +I+
Sbjct: 374 CGQLTGNVISRIN 386
>gi|229918582|ref|YP_002887228.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sp. AT1b]
gi|229470011|gb|ACQ71783.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
Length = 361
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY L+ +R + GL + + ITVST GIV I KF + +N A+SL
Sbjct: 173 IGEPFDNYDELMRFLRTVNHDNGL--NIGARHITVSTSGIVPKIYKFADEGMRINFAISL 230
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP RAF L+KLM+A++ Y + S ++I EY + GVND E++AH L
Sbjct: 231 HAPTTELRTKLMPINRAFDLDKLMDAVRYYTEKSGRRITFEYGLFGGVNDTEEYAHLLAD 290
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ + VNLIP N + RT ++ +F+K+L+ N+ T+R++ G DI AC
Sbjct: 291 LLKGIKCHVNLIPVNHVLERDYVRTPR-AQIFAFEKVLKDR-NVNVTIRREQGSDIDAAC 348
Query: 178 GQL 180
GQL
Sbjct: 349 GQL 351
>gi|450041242|ref|ZP_21837296.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans T4]
gi|449197971|gb|EMB99107.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans T4]
Length = 361
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEKVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|91788473|ref|YP_549425.1| hypothetical protein Bpro_2611 [Polaromonas sp. JS666]
gi|123164823|sp|Q12AB5.1|RLMN_POLSJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91697698|gb|ABE44527.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas sp. JS666]
Length = 382
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 118/196 (60%), Gaps = 10/196 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ LV A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYSQLVPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+ +HA QL L
Sbjct: 223 PQDALRDSLVPLNKKYPIAELLQACTRYQASAPRDFITFEYCMLDGVNDQPEHARQLVAL 282
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
++ NLIPFNP S + S+ +V++F KIL + I TTVRK G DI
Sbjct: 283 MQNHSAGGLSCKFNLIPFNPF-PASGLKRSAMPQVAAFAKILMDA-GIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKIS 189
ACGQL ++ D+ S
Sbjct: 341 DAACGQLAGDVQDRTS 356
>gi|108760323|ref|YP_629532.1| radical SAM protein [Myxococcus xanthus DK 1622]
gi|123374780|sp|Q1DCU1.1|RLMN1_MYXXD RecName: Full=Dual-specificity RNA methyltransferase RlmN 1;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 1; AltName:
Full=23S rRNA m2A2503 methyltransferase 1; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 1;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
1; AltName: Full=tRNA m2A37 methyltransferase 1
gi|108464203|gb|ABF89388.1| radical SAM enzyme, Cfr family [Myxococcus xanthus DK 1622]
Length = 359
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 115/195 (58%), Gaps = 4/195 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY + AV ++ L + P+ IT+STVG+V I + + ++LAVSLH
Sbjct: 165 MGEPLHNYEHTMSAVDVLVDALGLAMGPRFITLSTVGVVPGIRRLADEERPIHLAVSLHG 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R ++PA R +PL++LM+A + Y + +++IF E+ ++ G ND +HAH LG+LL
Sbjct: 225 ATDAERAALVPAGRRWPLDELMDACRYYSEKRKRRIFFEWTLISGRNDTAEHAHTLGQLL 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VN+IP NP S + V +FQ +L +Y++ +TVR++ G DI CGQ
Sbjct: 285 RGMDAHVNVIPLNPTVGYDGG-PSRPESVRAFQDVL-ATYDVPSTVRQRRGIDIDAGCGQ 342
Query: 180 LVVNLPDKISAKSTP 194
L + ++ S +S P
Sbjct: 343 LKATV-ERRSRRSLP 356
>gi|213621172|ref|ZP_03373955.1| hypothetical protein SentesTyp_28162 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 315
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 112/184 (60%), Gaps = 7/184 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 132 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 190
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 191 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 250
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 251 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 308
Query: 177 CGQL 180
CGQL
Sbjct: 309 CGQL 312
>gi|391230290|ref|ZP_10266496.1| putative Fe-S-cluster redox enzyme [Opitutaceae bacterium TAV1]
gi|391219951|gb|EIP98371.1| putative Fe-S-cluster redox enzyme [Opitutaceae bacterium TAV1]
Length = 373
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 109/183 (59%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY A++ A+ I+ G + ++IT+STVG+V I + + ++LAVSLH
Sbjct: 191 MGEPLHNYDAVMRALDILRDGNGLALGARKITLSTVGVVPGIVRLADEDRPVHLAVSLHG 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
Q+ R ++PAARA+PL+ LM A + Y +++IF E+ +++G ND+ AH +G+LL
Sbjct: 251 ATQEERAALVPAARAWPLDALMEACRYYVVKQRRRIFFEWTLIEGKNDDPDQAHAVGRLL 310
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
Q VNLIP NP + T + FQ +L Y + +TVR++ G DI CGQ
Sbjct: 311 RGLQAQVNLIPLNPTSGYAGGPTRV-EAAKRFQSVL-ADYGLPSTVRQRRGIDIGAGCGQ 368
Query: 180 LVV 182
L
Sbjct: 369 LAT 371
>gi|450107147|ref|ZP_21860887.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF14]
gi|450143366|ref|ZP_21873405.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1ID3]
gi|450160965|ref|ZP_21880293.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 66-2A]
gi|449152325|gb|EMB56035.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1ID3]
gi|449222315|gb|EMC22044.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF14]
gi|449239427|gb|EMC38150.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 66-2A]
Length = 361
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYNVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|288904758|ref|YP_003429979.1| hypothetical protein GALLO_0545 [Streptococcus gallolyticus UCN34]
gi|306830757|ref|ZP_07463921.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977679|ref|YP_004287395.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|386337194|ref|YP_006033363.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288731483|emb|CBI13037.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304427104|gb|EFM30212.1| cfr family radical SAM enzyme [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177607|emb|CBZ47651.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334279830|dbj|BAK27404.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 368
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 8/203 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I F + +NLAVSL
Sbjct: 169 IGEPFDNYNNVLRFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELAD 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ SS ++V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 176 ACGQLVVNLPDKISAKSTPPVTD 198
ACGQL N + K+ T+
Sbjct: 346 ACGQLRSNTMKRDRQKAVAEKTN 368
>gi|218706020|ref|YP_002413539.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
UMN026]
gi|293405958|ref|ZP_06649950.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298381759|ref|ZP_06991358.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300898379|ref|ZP_07116722.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|417587516|ref|ZP_12238285.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|419933201|ref|ZP_14450469.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|432354433|ref|ZP_19597704.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|432402782|ref|ZP_19645534.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|432427048|ref|ZP_19669547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|432461514|ref|ZP_19703661.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|432476738|ref|ZP_19718735.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|432518616|ref|ZP_19755802.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|432538739|ref|ZP_19775639.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|432632278|ref|ZP_19868203.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|432641994|ref|ZP_19877826.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|432666943|ref|ZP_19902522.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|432775597|ref|ZP_20009866.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|432887494|ref|ZP_20101547.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|432913734|ref|ZP_20119367.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|433019580|ref|ZP_20207780.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|433054161|ref|ZP_20241335.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|433068807|ref|ZP_20255593.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|433159562|ref|ZP_20344397.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|433179352|ref|ZP_20363747.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
gi|254807179|sp|B7N6A5.1|RLMN_ECOLU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|218433117|emb|CAR14014.1| putative Fe-S containing enzyme [Escherichia coli UMN026]
gi|291428166|gb|EFF01193.1| hypothetical protein ECGG_01315 [Escherichia coli FVEC1412]
gi|298279201|gb|EFI20715.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
FVEC1302]
gi|300357919|gb|EFJ73789.1| radical SAM enzyme, Cfr family [Escherichia coli MS 198-1]
gi|345335546|gb|EGW67984.1| hypothetical protein ECSTECC16502_3159 [Escherichia coli
STEC_C165-02]
gi|388414231|gb|EIL74197.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
576-1]
gi|430874840|gb|ELB98392.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE2]
gi|430925253|gb|ELC45926.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE26]
gi|430954747|gb|ELC73602.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE181]
gi|430988335|gb|ELD04829.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE204]
gi|431004556|gb|ELD19770.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE208]
gi|431050410|gb|ELD60160.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE228]
gi|431068619|gb|ELD77093.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE235]
gi|431169856|gb|ELE70071.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE80]
gi|431181257|gb|ELE81128.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE83]
gi|431199769|gb|ELE98496.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE116]
gi|431317601|gb|ELG05379.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE54]
gi|431415843|gb|ELG98338.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE158]
gi|431438999|gb|ELH20368.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE190]
gi|431529888|gb|ELI06579.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE105]
gi|431569590|gb|ELI42532.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE122]
gi|431582690|gb|ELI54702.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE128]
gi|431677054|gb|ELJ43136.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE177]
gi|431700235|gb|ELJ65217.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
KTE82]
Length = 384
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRCYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|354596617|ref|ZP_09014634.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
gi|353674552|gb|EHD20585.1| Ribosomal RNA large subunit methyltransferase N [Brenneria sp.
EniD312]
Length = 393
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 187 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + +E + A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 246 PNDEIRNEIMPLNKKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 306 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 364 CGQLAGEVVDR 374
>gi|374337519|ref|YP_005094223.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
gi|372283623|emb|CCF01815.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
macedonicus ACA-DC 198]
Length = 368
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 8/203 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I F + +NLAVSL
Sbjct: 169 IGEPFDNYNNVLRFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELAD 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ SS ++V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 176 ACGQLVVNLPDKISAKSTPPVTD 198
ACGQL N + K+ T+
Sbjct: 346 ACGQLRSNTMKRDRQKAVAEKTN 368
>gi|256853566|ref|ZP_05558931.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis T8]
gi|256710509|gb|EEU25552.1| ribosomal RNA large subunit methyltransferase N [Enterococcus
faecalis T8]
Length = 357
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYVNVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|340000243|ref|YP_004731127.1| hypothetical protein SBG_2301 [Salmonella bongori NCTC 12419]
gi|339513605|emb|CCC31359.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 388
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + ++ + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDAIRDEIVPINKKYNIDTFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|397663988|ref|YP_006505526.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395127399|emb|CCD05591.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q++ SS + + +F+ L + I T RK G DI ACG
Sbjct: 286 LHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + DK S
Sbjct: 344 QLAGEVKDKTS 354
>gi|150390541|ref|YP_001320590.1| ribosomal RNA large subunit methyltransferase N [Alkaliphilus
metalliredigens QYMF]
gi|205829711|sp|A6TRW3.1|RLMN_ALKMQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|149950403|gb|ABR48931.1| radical SAM enzyme, Cfr family [Alkaliphilus metalliredigens QYMF]
Length = 352
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 118/198 (59%), Gaps = 7/198 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEPL+NY + ++I+ GL + + IT+ST G+V I K + +NLA+SLH
Sbjct: 159 GEPLHNYDETIRFLKIVNDPEGL--NIGNRHITLSTCGLVPEIKKLGALQIPINLAISLH 216
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R Q MP A+ + +++L+ + +Y +N+ ++I EY +++ VND E+ AH+L KL
Sbjct: 217 APNDQLRKQTMPIAQKYTIDQLIQSCYDYLENNNRRITFEYALIEDVNDGEKEAHELSKL 276
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP NPI + ++ S D +V FQ+IL+ S I T+R++MG DI GACG
Sbjct: 277 LKGLLCHVNLIPINPIEERT-YQKSKDSQVKKFQQILK-SNGIEATIRREMGTDIQGACG 334
Query: 179 QLVVNLPDKISAKSTPPV 196
QL D K V
Sbjct: 335 QLRRKYVDDQEKKEISEV 352
>gi|52841777|ref|YP_095576.1| radical SAM protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777412|ref|YP_005185849.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628888|gb|AAU27629.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508226|gb|AEW51750.1| radical SAM enzyme, Cfr family [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 386
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 171 MGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 230 PTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKL 289
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q++ SS + + +F+ L + I T RK G DI ACG
Sbjct: 290 LHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACG 347
Query: 179 QLVVNLPDKIS 189
QL + DK S
Sbjct: 348 QLAGEVKDKTS 358
>gi|345872018|ref|ZP_08823958.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
gi|343919552|gb|EGV30298.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodococcus
drewsii AZ1]
Length = 365
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 120/190 (63%), Gaps = 7/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A V+A+ IM L + ++ +R+T+ST GIV I + ++ ++LAVSLHA
Sbjct: 162 MGEPLANFEAAVKAMDIMQDDLAYMLAKQRVTLSTSGIVPNIYRLR-EVSDVSLAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P R +PL +L+ A K Y N ++ K+ EY+MLDGVND HA QL +L
Sbjct: 221 PNDELRDQLVPINRKYPLSELIPACKAYIANDKRRKVTWEYVMLDGVNDSIAHAKQLIRL 280
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGAC 177
LE +NLIPFNP + F TS+ +++ +F+ ++ R I RK G +IS AC
Sbjct: 281 LEGVPSKLNLIPFNPFAG-NDFGTSTPERIEAFRVRLTRAG--IFAMTRKTRGDEISAAC 337
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 338 GQLVGRVEDR 347
>gi|450005125|ref|ZP_21826509.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NMT4863]
gi|449188989|gb|EMB90673.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NMT4863]
Length = 361
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|54297459|ref|YP_123828.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
gi|81370554|sp|Q5X516.1|RLMN_LEGPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|53751244|emb|CAH12655.1| hypothetical protein lpp1504 [Legionella pneumophila str. Paris]
Length = 382
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q++ SS + + +F+ L + I T RK G DI ACG
Sbjct: 286 LHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + DK S
Sbjct: 344 QLAGEVKDKTS 354
>gi|229545365|ref|ZP_04434090.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
gi|307295833|ref|ZP_07575665.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
gi|422686726|ref|ZP_16744918.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000]
gi|229309472|gb|EEN75459.1| Fe-S-cluster redox enzyme [Enterococcus faecalis TX1322]
gi|306496164|gb|EFM65743.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0411]
gi|315028571|gb|EFT40503.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX4000]
Length = 357
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYVNVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTLIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|205829856|sp|Q5ZV93.2|RLMN_LEGPH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|307610246|emb|CBW99808.1| hypothetical protein LPW_15701 [Legionella pneumophila 130b]
Length = 382
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q++ SS + + +F+ L + I T RK G DI ACG
Sbjct: 286 LHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + DK S
Sbjct: 344 QLAGEVKDKTS 354
>gi|397667169|ref|YP_006508706.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
gi|395130580|emb|CCD08825.1| putative Fe-S containing enzyme [Legionella pneumophila subsp.
pneumophila]
Length = 382
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMNIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q++ SS + + +F+ L + I T RK G DI ACG
Sbjct: 286 LHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLM-KHGINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + DK S
Sbjct: 344 QLAGEVKDKTS 354
>gi|357237976|ref|ZP_09125314.1| 23S rRNA m2A2503 methyltransferase [Streptococcus ictaluri 707-05]
gi|356753222|gb|EHI70340.1| 23S rRNA m2A2503 methyltransferase [Streptococcus ictaluri 707-05]
Length = 347
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 147 IGEPFDNYKNVMSFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 204
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 205 HAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNQVNDGVEQAQELAD 264
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S +VS+F +L+ + + VR++ G DI
Sbjct: 265 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKKRVSAFDDVLKKN-GVNCVVRQEHGTDIDA 323
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N K K+T
Sbjct: 324 ACGQLRSNTMKKDREKAT 341
>gi|420263010|ref|ZP_14765650.1| cfr family radical SAM enzyme [Enterococcus sp. C1]
gi|394769974|gb|EJF49792.1| cfr family radical SAM enzyme [Enterococcus sp. C1]
Length = 355
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ ++I+ GL + + ITVST G+ H I +F + +NLA+SL
Sbjct: 162 IGEPFDNYDNVMHFLQIINDPKGLA--IGARHITVSTSGLAHKIKEFAENGLQVNLAISL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR +M R FP+EKLM A+ Y + + ++I EYIMLD VND +HA QL
Sbjct: 220 HAPNNEVRTSMMRINRNFPIEKLMAAVDYYLEKTNRRITFEYIMLDHVNDRPEHARQLAA 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S V +F IL+ + I +RK+ G DI
Sbjct: 280 LLKDKKKLSYVNLIPYNPVSEHDQYARSKKADVLAFYDILKKN-GINCVIRKEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|406873763|gb|EKD23850.1| hypothetical protein ACD_81C00165G0001 [uncultured bacterium]
Length = 335
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 5/181 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ NY ++ A+RI+ F + +R+++ST GI I KF + +NLA+SLHA
Sbjct: 150 MGEPMVNYDNVMAAIRILNNPNGFNLGARRMSISTSGIPEGIRKFAREGLEVNLALSLHA 209
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++RC+IMP +R LE++M+AL+EY + +KI EYIM+ V D + AH+L KLL
Sbjct: 210 PNNELRCKIMPVSRRHSLEEVMDALREYVDITHRKIMFEYIMIKDVTDTPELAHELVKLL 269
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLI +N F S+ +++ F++IL + I R GQDI GACGQ
Sbjct: 270 SGWLGYVNLINYN---QTEMFAPSTRERIEEFKQILEDGH-ITVVQRYTFGQDIDGACGQ 325
Query: 180 L 180
L
Sbjct: 326 L 326
>gi|397649252|ref|YP_006489779.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans GS-5]
gi|449875940|ref|ZP_21782500.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans S1B]
gi|449883595|ref|ZP_21785265.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA38]
gi|449893757|ref|ZP_21788903.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF12]
gi|449904610|ref|ZP_21792766.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M230]
gi|449908620|ref|ZP_21793844.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans OMZ175]
gi|449916144|ref|ZP_21796696.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15JP3]
gi|449920159|ref|ZP_21798347.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1SM1]
gi|449925376|ref|ZP_21800237.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4SM1]
gi|449941932|ref|ZP_21805759.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11A1]
gi|449948019|ref|ZP_21807780.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11SSST2]
gi|449953922|ref|ZP_21809172.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4VF1]
gi|449965159|ref|ZP_21811731.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15VF2]
gi|449969763|ref|ZP_21813405.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2VS1]
gi|449974535|ref|ZP_21815345.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11VS1]
gi|449980193|ref|ZP_21817052.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 5SM3]
gi|449996533|ref|ZP_21823595.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A9]
gi|450000035|ref|ZP_21824880.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N29]
gi|450028343|ref|ZP_21832081.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans G123]
gi|450033846|ref|ZP_21833997.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M21]
gi|450048248|ref|ZP_21839676.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N34]
gi|450051049|ref|ZP_21840621.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM1]
gi|450056543|ref|ZP_21842092.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML4]
gi|450064725|ref|ZP_21845440.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML5]
gi|450068017|ref|ZP_21846941.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML9]
gi|450072169|ref|ZP_21848456.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M2A]
gi|450078200|ref|ZP_21850884.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N3209]
gi|450082602|ref|ZP_21852445.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N66]
gi|450092725|ref|ZP_21856197.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans W6]
gi|450109937|ref|ZP_21861797.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM6]
gi|450119975|ref|ZP_21865403.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST6]
gi|450125384|ref|ZP_21867641.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2A]
gi|450137324|ref|ZP_21871563.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML1]
gi|450149420|ref|ZP_21876127.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 14D]
gi|450165884|ref|ZP_21882054.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans B]
gi|450175273|ref|ZP_21885064.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM1]
gi|450180658|ref|ZP_21887353.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 24]
gi|392602821|gb|AFM80985.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans GS-5]
gi|449151489|gb|EMB55223.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11A1]
gi|449155635|gb|EMB59140.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15JP3]
gi|449158952|gb|EMB62350.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 1SM1]
gi|449161640|gb|EMB64821.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4SM1]
gi|449168027|gb|EMB70871.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11SSST2]
gi|449171383|gb|EMB74047.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 4VF1]
gi|449171615|gb|EMB74268.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 15VF2]
gi|449173875|gb|EMB76407.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 2VS1]
gi|449177211|gb|EMB79521.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 5SM3]
gi|449178232|gb|EMB80503.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 11VS1]
gi|449183038|gb|EMB85037.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans A9]
gi|449186279|gb|EMB88118.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N29]
gi|449195756|gb|EMB97065.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans G123]
gi|449196921|gb|EMB98152.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M21]
gi|449197060|gb|EMB98277.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N34]
gi|449202180|gb|EMC03119.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM1]
gi|449203115|gb|EMC03992.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML5]
gi|449206666|gb|EMC07362.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML4]
gi|449207705|gb|EMC08373.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML9]
gi|449210249|gb|EMC10719.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N3209]
gi|449211733|gb|EMC12126.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M2A]
gi|449214320|gb|EMC14605.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans N66]
gi|449217973|gb|EMC17999.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans W6]
gi|449225692|gb|EMC25278.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM6]
gi|449230764|gb|EMC30012.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans ST6]
gi|449232567|gb|EMC31675.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2A]
gi|449234528|gb|EMC33533.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 14D]
gi|449235398|gb|EMC34356.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NLML1]
gi|449240234|gb|EMC38921.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans B]
gi|449247135|gb|EMC45423.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM1]
gi|449248065|gb|EMC46328.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 24]
gi|449249675|gb|EMC47782.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SA38]
gi|449253328|gb|EMC51286.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans S1B]
gi|449255662|gb|EMC53507.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF12]
gi|449259139|gb|EMC56683.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans M230]
gi|449262757|gb|EMC60200.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans OMZ175]
Length = 361
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|403049389|ref|ZP_10903873.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 270
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 120/194 (61%), Gaps = 6/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ ++E+ +IM + + +S KRIT+ST GI IN+ S++ ++LA+SLHA
Sbjct: 71 MGEPMLNFKPVIESAKIMKDQMAYSLSRKRITISTSGITPQINQLSSEID-VSLAISLHA 129
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P+ +R +I+P + +P+++L+ + K+Y + + K I IEYI++DG+ND A +L +
Sbjct: 130 PIDSLRDKIVPINKKYPIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKKLAR 189
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFNP S ++ SS + F+ IL S TT+R G + GAC
Sbjct: 190 LLSDVSCKINLIPFNPFEG-SSYKRSSQKNIEQFKSILM-SKGFITTLRVTRGDAVDGAC 247
Query: 178 GQLVVNLPDKISAK 191
GQLV L + I +K
Sbjct: 248 GQLVGKLNNSIKSK 261
>gi|387786646|ref|YP_006251742.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans LJ23]
gi|379133047|dbj|BAL69799.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans LJ23]
Length = 361
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|449928865|ref|ZP_21801372.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 3SN1]
gi|449164937|gb|EMB67971.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 3SN1]
Length = 361
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|24379004|ref|NP_720959.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans UA159]
gi|449863339|ref|ZP_21778185.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2B]
gi|449870255|ref|ZP_21780545.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 8ID3]
gi|449984109|ref|ZP_21818826.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM2]
gi|450100044|ref|ZP_21858616.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF1]
gi|450169825|ref|ZP_21883203.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM4]
gi|81588375|sp|Q8DVG8.1|RLMN_STRMU RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|24376896|gb|AAN58265.1|AE014897_11 conserved hypothetical protein [Streptococcus mutans UA159]
gi|449156797|gb|EMB60255.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans 8ID3]
gi|449180577|gb|EMB82730.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NFSM2]
gi|449220604|gb|EMC20457.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SF1]
gi|449246682|gb|EMC44980.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans SM4]
gi|449265068|gb|EMC62397.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans U2B]
Length = 361
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDSPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|403051770|ref|ZP_10906254.1| putative Fe-S-cluster redox enzyme [Acinetobacter bereziniae LMG
1003]
gi|445414088|ref|ZP_21433813.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
gi|444764907|gb|ELW89212.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter sp. WC-743]
Length = 416
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 122/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 205 MGEPLLNYDAVLSSMNIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDID-VALAISLHA 263
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y ++S++ + IEY+MLDGVND+ +HA Q
Sbjct: 264 PNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLDGVNDQPEHAQQ 323
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 324 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 381
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 382 AACGQLVGQVADR 394
>gi|390943210|ref|YP_006406971.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
gi|390416638|gb|AFL84216.1| 23S rRNA m(2)A-2503 methyltransferase [Belliella baltica DSM 15883]
Length = 354
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++EA+ +I + ++P+RIT+STVGI I K D NLA+SLH+
Sbjct: 165 MGEPLLNYNNVIEAIDKITSPEGLGMAPRRITLSTVGIPKMIKKMADDGVRFNLAISLHS 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP P+E L ++LK + + +++K+ EY++ +G+ND+E HA L K
Sbjct: 225 AINETRSRLMPINNVNPIEDLADSLKYWYEKTKRKVTYEYVIWEGINDDEAHARALAKFC 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR +S + V + +IL I VRK GQDI ACGQ
Sbjct: 285 KIIPSKVNIIQYNPIDE-GEFRQASQEAVEMYVRILENQ-GIIAKVRKSRGQDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|336063790|ref|YP_004558649.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pasteurianus ATCC 43144]
gi|334281990|dbj|BAK29563.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pasteurianus ATCC 43144]
Length = 368
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 8/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I F + +NLAVSL
Sbjct: 169 IGEPFDNYNNVLRFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELAD 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ SS ++V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 176 ACGQLVVNLPDKISAKSTPPVT 197
ACGQL N + K+ T
Sbjct: 346 ACGQLRSNTMKRDRQKAVAEKT 367
>gi|260889579|ref|ZP_05900842.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
gi|260860990|gb|EEX75490.1| radical SAM enzyme, Cfr family [Leptotrichia hofstadii F0254]
Length = 365
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NY A++ ++ ++ Q KR T+ST GIV+ I +F + +NLA+SLH+
Sbjct: 175 MGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQINLAISLHS 234
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
DVR +IMP + + +++L +L EYQK ++ +I EYI++D +N E + A +L L
Sbjct: 235 VKDDVRSEIMPINKRWGVKQLKESLLEYQKQTKNRITFEYILIDDLNCEPEDARELAGFL 294
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+F +VNLIP+NP+G ++ S K F K+L+ N+ T+R+ GQDI+ ACGQ
Sbjct: 295 NSFSCLVNLIPYNPVGG-KPYKRPSKQKQREFYKLLKDK-NVNVTLRETKGQDIAAACGQ 352
Query: 180 L 180
L
Sbjct: 353 L 353
>gi|239815175|ref|YP_002944085.1| Cfr family radical SAM protein [Variovorax paradoxus S110]
gi|239801752|gb|ACS18819.1| radical SAM enzyme, Cfr family [Variovorax paradoxus S110]
Length = 382
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 116/194 (59%), Gaps = 7/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R M + +S +R+TVST G+V I++ +D P + +AVSLHA
Sbjct: 165 MGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCP-VAMAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+ +L+ A K Y ++ + I EY MLDGVND+ +HA QL +L
Sbjct: 224 PNDALRDDLVPLNRKYPIAELLEACKRYLVHAPRDFITFEYCMLDGVNDQPEHARQLVEL 283
Query: 119 LETFQVVV--NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ T V NLIPFNP + R S +V +F K L + TTVRK G DI A
Sbjct: 284 VRTHGVSCKFNLIPFNPFPASGLLR-SPQPRVLAFAKAL-SEAGLVTTVRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDKISA 190
CGQL ++ D+ A
Sbjct: 342 CGQLAGDVKDRTRA 355
>gi|345858751|ref|ZP_08811131.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
gi|344328167|gb|EGW39565.1| radical SAM superfamily protein [Desulfosporosinus sp. OT]
Length = 357
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ + +A+RI+ GL ++ KRITVST G+ I +F + +NLA+SL
Sbjct: 166 IGEPFDNFKNVADALRIIKDHKGLA--IAGKRITVSTSGLADGIYEFTDNSLQVNLAISL 223
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM RAFP+E+LM A+ Y K + ++I +EYI+L +ND +HA QL
Sbjct: 224 HAPTNELRTQIMKINRAFPIEELMQAVDYYLKKTNRRITLEYILLKNLNDRREHALQLAA 283
Query: 118 LL--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + VNLIP+NP+ +Q++ S + + +F L+ I ++R + G DI
Sbjct: 284 LIGDKHHLTNVNLIPYNPVDEHNQYQRSEHESMLAFYDTLKKQ-GINCSIRLEHGTDIDA 342
Query: 176 ACGQL 180
ACGQL
Sbjct: 343 ACGQL 347
>gi|332288518|ref|YP_004419370.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
gi|330431414|gb|AEC16473.1| ribosomal RNA large subunit methyltransferase N [Gallibacterium
anatis UMN179]
Length = 372
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + +V A+ IM + +S +R+T+ST G+V A++K ++ + LA+SLHA
Sbjct: 166 MGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKL-GEMIDVALAISLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E LM+++ Y K S K+ IEY+MLD VNDE +HAHQL
Sbjct: 225 PNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAHQLA 284
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIP+NP + + SS+ ++ FQK L Y VRK G DI A
Sbjct: 285 KVLKNTPCKINLIPWNPFPE-APYNKSSNTRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 342
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 343 CGQLAGDVIDR 353
>gi|25010575|ref|NP_734970.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae NEM316]
gi|77413558|ref|ZP_00789746.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
gi|81588871|sp|Q8E6Q7.1|RLMN_STRA3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|23094928|emb|CAD46149.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160387|gb|EAO71510.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae 515]
Length = 368
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 171 IGEPFDNYTNVLKFLRTVNDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 229 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELAD 288
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDA 347
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 348 ACGQLRSN 355
>gi|453330449|dbj|GAC87677.1| Fe-S-cluster redox protein [Gluconobacter thailandicus NBRC 3255]
Length = 403
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M G +S +RIT+ST G+V +++ +L G+NLA+SLHA
Sbjct: 214 MGEPLYNYDNVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDEL-GINLAISLHA 272
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R QI+P R +P+E+LM A + Y S ++I EYIML GVND E A +L +L
Sbjct: 273 VTNELRDQIVPLNRKYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRL 332
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIPFNP S F+ S+ ++++ F KI+ + + +R GQDI ACG
Sbjct: 333 IKDMPAKVNLIPFNPWPG-SDFKPSTREQLAKFAKIVMDA-GFASPIRTPRGQDILAACG 390
Query: 179 QL 180
QL
Sbjct: 391 QL 392
>gi|397164379|ref|ZP_10487834.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
gi|396093527|gb|EJI91082.1| 23S rRNA methyltransferase [Enterobacter radicincitans DSM 16656]
Length = 388
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLGAVRRYIGKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFCKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|306832938|ref|ZP_07466070.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
gi|304424837|gb|EFM27971.1| cfr family radical SAM enzyme [Streptococcus bovis ATCC 700338]
Length = 368
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 8/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I F + +NLAVSL
Sbjct: 169 IGEPFDNYNNVLRFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFAHESLQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 227 HAPNNELRSQIMRVNRSFPLEKLFAAIEYYVETTNRRVTFEYIMLNEVNDFPENAQELAD 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ SS ++V++F +L+ + + VR++ G DI
Sbjct: 287 LTKKIRKLSYINLIPYNPVSEHDQYSRSSKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 345
Query: 176 ACGQLVVNLPDKISAKSTPPVT 197
ACGQL N + K+ T
Sbjct: 346 ACGQLRSNTMKRDRQKAVAEKT 367
>gi|414343116|ref|YP_006984637.1| Fe-S-cluster redox protein [Gluconobacter oxydans H24]
gi|411028451|gb|AFW01706.1| Fe-S-cluster redox protein [Gluconobacter oxydans H24]
Length = 403
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M G +S +RIT+ST G+V +++ +L G+NLA+SLHA
Sbjct: 214 MGEPLYNYDNVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGEEL-GINLAISLHA 272
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R QI+P R +P+E+LM A + Y S ++I EYIML GVND E A +L +L
Sbjct: 273 VTNELRDQIVPLNRKYPIEELMAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRL 332
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIPFNP S F+ S+ ++++ F KI+ + + +R GQDI ACG
Sbjct: 333 IKDMPAKVNLIPFNPWPG-SDFKPSTREQLAKFAKIVMDA-GFASPIRTPRGQDILAACG 390
Query: 179 QL 180
QL
Sbjct: 391 QL 392
>gi|333377200|ref|ZP_08468936.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
mossii DSM 22836]
gi|332886413|gb|EGK06657.1| ribosomal RNA large subunit methyltransferase N [Dysgonomonas
mossii DSM 22836]
Length = 341
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 116/193 (60%), Gaps = 8/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY L + + IMT G+ + SPKRITVST G+ + +F D +LA+S+
Sbjct: 148 MGEPLDNYEELKKTLEIMTADYGMAW--SPKRITVSTTGVTPKLKRFL-DESNAHLAISI 204
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H+P ++ R IMPA +AFP+ +M+ L++Y Q+++ EYIM D ND HA +L +
Sbjct: 205 HSPEKEQRLSIMPAEKAFPITGVMDLLRQYDWTKQRRLSFEYIMFDNFNDSLIHAKELTQ 264
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L + VNLI F+ I +V +TS+ +K+ +F+ L + +T+R G+DI AC
Sbjct: 265 MLRGVECRVNLIRFHAIPNV-DLKTSTKEKMEAFRDYLTKK-GVTSTIRASRGEDIFAAC 322
Query: 178 GQLVVNLPDKISA 190
G L D +SA
Sbjct: 323 GMLSTMKGDALSA 335
>gi|328866638|gb|EGG15021.1| putative ribosomal RNA large subunit methyltransferase N
[Dictyostelium fasciculatum]
Length = 432
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 117/184 (63%), Gaps = 8/184 (4%)
Query: 2 GEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL NY + +A++I+T G +S +IT+ST G+V I + D PG+ LA+SLHA
Sbjct: 220 GEPLYNYRNVSKALKILTDGEGISISKSKITLSTSGVVPLIERLGQDFPGIGLAISLHAS 279
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R +I+P + +P+E+L+ A + QK ++ +I IEY+ML G+ND +Q A+ L +L
Sbjct: 280 NNKTRSEIVPINQQWPIEELVQACINFTQKYTKDRITIEYVMLKGINDAKQDAYNLIQLA 339
Query: 120 ETFQVVVNLIPFNPI-GSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGAC 177
F ++NLIPFNP G++ + + D++ SF +IL RG ++ TVR+ G DI AC
Sbjct: 340 SQFPSLINLIPFNPWPGTI--YECTPIDQIESFARILERGG--LKVTVRQPRGTDILAAC 395
Query: 178 GQLV 181
GQLV
Sbjct: 396 GQLV 399
>gi|406708991|ref|YP_006763717.1| cfr family radical SAM enzyme [Streptococcus agalactiae
GD201008-001]
gi|406649876|gb|AFS45277.1| cfr family radical SAM enzyme [Streptococcus agalactiae
GD201008-001]
Length = 374
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 177 IGEPFDNYTNVLKFLRTVNDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 234
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 235 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELAD 294
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 295 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDA 353
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 354 ACGQLRSN 361
>gi|77411450|ref|ZP_00787796.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
gi|77162536|gb|EAO73501.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae CJB111]
Length = 368
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 171 IGEPFDNYTNVLKFLRTVNDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 229 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELAD 288
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDA 347
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 348 ACGQLRSN 355
>gi|451982040|ref|ZP_21930374.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
gi|451760705|emb|CCQ91650.1| Ribosomal RNA large subunit methyltransferase N [Nitrospina
gracilis 3/211]
Length = 341
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY A+ +A+R+M ++S ++IT+ST G+V I +F S+ +NLA+SL+A
Sbjct: 158 MGEPLDNYDAVCDALRLMVSPEALRISTRKITLSTSGLVDRIERFKSENLHVNLAISLNA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R QIMP R +P+E L++ L+ Y +++ EY+ML G+ND ++ A +L KLL
Sbjct: 218 TDNPTRDQIMPINRKYPIEVLLDCLRTYPLKPSRRLTFEYVMLKGINDTDEDARRLAKLL 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+NLIPFN S + ++ + +V +FQ L G + VRK G DI GACGQ
Sbjct: 278 RNIPSKINLIPFNAFDS-ADYQPPAPQRVQAFQDYLIGKH-YSVFVRKNRGTDILGACGQ 335
Query: 180 LVV 182
L +
Sbjct: 336 LAL 338
>gi|406947137|gb|EKD78125.1| hypothetical protein ACD_42C00034G0001 [uncultured bacterium]
Length = 368
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++EA+ +MT L + +S R+T+ST G+V + + D P ++LAVSLHA
Sbjct: 164 MGEPLLNYPPVIEAMDLMTHDLAYGLSKYRVTLSTSGVVPMMLQLKKDSP-VSLAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P + +PLE LM + Y +S++ I EY+ML +ND HA QL +L
Sbjct: 223 PTNELREQLVPINKKYPLEVLMPVCRNYFPADSKRCIVFEYVMLKNINDSLTHAKQLIRL 282
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIPFNP + + S + + +FQ L + I+T +RK G+DI GACG
Sbjct: 283 LDNMPCKVNLIPFNPFPK-TNYVCSDMETILAFQNRLTAA-GIKTWIRKTRGEDIDGACG 340
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 341 QLAGDFTDR 349
>gi|290580974|ref|YP_003485366.1| hypothetical protein SmuNN2025_1448 [Streptococcus mutans NN2025]
gi|254997873|dbj|BAH88474.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 361
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLA+SL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAISL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL N + K+T
Sbjct: 339 ACGQLRSNTMKRDREKAT 356
>gi|257125946|ref|YP_003164060.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
gi|257049885|gb|ACV39069.1| radical SAM enzyme, Cfr family [Leptotrichia buccalis C-1013-b]
Length = 372
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NY A++ ++ ++ Q KR T+ST GIV+ I +F + +NLA+SLH+
Sbjct: 181 MGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTENENQINLAISLHS 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
DVR +IMP + + +++L +L EYQK ++ +I EYI+++ +N E + A +L L
Sbjct: 241 VKDDVRNEIMPINKRWGVKQLKESLLEYQKQTKNRITFEYILINDLNCEPEDARELAGFL 300
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+F +VNLIP+NP+G ++T S K F K+L+ N+ T+R+ GQDI+ ACGQ
Sbjct: 301 NSFSCLVNLIPYNPVGG-KPYKTPSKQKQREFYKLLKDK-NVNVTLRETKGQDIAAACGQ 358
Query: 180 L 180
L
Sbjct: 359 L 359
>gi|226939612|ref|YP_002794685.1| hypothetical protein LHK_00683 [Laribacter hongkongensis HLHK9]
gi|254807186|sp|C1DD41.1|RLMN_LARHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|226714538|gb|ACO73676.1| Radical SAM domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 366
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 118/193 (61%), Gaps = 5/193 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+RIM + +S +R+T+ST G+V A+++ D P + LAVSLHA
Sbjct: 163 MGEPLANYDNVVAAMRIMLDDHGYGLSRRRVTLSTSGLVPAMDRLREDCP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +I+P + +PL +L+ A + Y +K + + EY+MLD +ND +HA +L L
Sbjct: 222 PNDRIRDEIVPINKKYPLRELLAACERYLEKAPRDFVTFEYVMLDQINDRPEHARELVAL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + +S++ V +F+ IL + I TTVRK G+DI ACG
Sbjct: 282 VRDVPCKFNLIPFNPFPN-SGYGRASNNAVRAFRDILAEAGYI-TTVRKTRGEDIDAACG 339
Query: 179 QLVVNLPDKISAK 191
QL + DK K
Sbjct: 340 QLAGQVQDKTQRK 352
>gi|404379277|ref|ZP_10984342.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
gi|404294703|gb|EJZ50198.1| ribosomal RNA large subunit methyltransferase N [Simonsiella
muelleri ATCC 29453]
Length = 364
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 119/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 164 MGEPLANYDNVINALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR +I+P + +PL++LM A Y K + I EY+MLDG+ND+ +HAH+L +L
Sbjct: 223 SNDQVRDKIVPLNKKYPLKELMAACNRYLMKAPRDFITFEYVMLDGINDKPEHAHELVQL 282
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS+ ++ F++IL + ++ TTVRK G DI ACG
Sbjct: 283 VKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGDDIDAACG 340
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 341 QLAGQVQDK 349
>gi|77408383|ref|ZP_00785123.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
gi|417004674|ref|ZP_11943313.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae FSL S3-026]
gi|421147564|ref|ZP_15607249.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae GB00112]
gi|77172986|gb|EAO76115.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae COH1]
gi|341577656|gb|EGS28063.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae FSL S3-026]
gi|401685684|gb|EJS81679.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae GB00112]
Length = 368
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 171 IGEPFDNYTNVLKFLRTVNDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 229 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELAD 288
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDA 347
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 348 ACGQLRSN 355
>gi|365093283|ref|ZP_09330349.1| radical SAM protein [Acidovorax sp. NO-1]
gi|363414457|gb|EHL21606.1| radical SAM protein [Acidovorax sp. NO-1]
Length = 373
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLALDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+E+LM A Y ++ + I EY MLDGVND+ +HA QL +L
Sbjct: 223 PNDPLRDNLVPLNRKYPIEELMAACNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIEL 282
Query: 119 LE-----TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
++ + NLIPFNP + R S ++V +F K+L I TTVRK G DI
Sbjct: 283 VKPARGAGVRCKFNLIPFNPFPASGLLR-SPQNQVLAFAKVL-SEAGIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 341 DAACGQLAGDVKDRTRA 357
>gi|291556918|emb|CBL34035.1| radical SAM enzyme, Cfr family [Eubacterium siraeum V10Sc8a]
Length = 345
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
+GEP +NY AL + + I+T +P + K ITVST G+ + F NLAVSLH
Sbjct: 155 IGEPFDNYDALCDFLDIVT-VPGGIETGTKHITVSTCGLCDKMKLFAERKEPCNLAVSLH 213
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R ++MP R + + +++ + K Y + + +K+ +EYI+LDG+ND ++A QL L
Sbjct: 214 APDDEIRNRLMPVNRRYSISQVIESAKYYVERTNRKVLLEYILLDGINDSRENARQLAAL 273
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ ++ VNLIP+NP S+F+ SS++ +++F L+ + I T RK+ G ++S ACG
Sbjct: 274 IGNARLFVNLIPYNP-SHDSEFKRSSEENITAFYDELKKN-RINVTRRKEFGTELSAACG 331
Query: 179 QLVVNLPDKISAKSTPP 195
QL D+IS + P
Sbjct: 332 QL---RSDRISGEHKVP 345
>gi|224003013|ref|XP_002291178.1| hypothetical protein THAPSDRAFT_34735 [Thalassiosira pseudonana
CCMP1335]
gi|220972954|gb|EED91285.1| hypothetical protein THAPSDRAFT_34735, partial [Thalassiosira
pseudonana CCMP1335]
Length = 284
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPLNNYA ++ A R M + ++ R+TVSTVG+V I DLP +NLA+SLHA
Sbjct: 101 MGEPLNNYANVLAACRAMIDRRLWNLAHNRVTVSTVGVVSRIRDLTRDLPEVNLALSLHA 160
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q +R I+PAA+ P+E L+ AL + +++ IEY+ML+G + AHQLG+L
Sbjct: 161 PNQKMREAIVPAAKGTPIESLIEALDAHMMAKKKRAMIEYVMLEGDTSTIEAAHQLGQLC 220
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
Q+VVNLIP+N + S++ + F+ I+ SY ++R+ MG DI+GACGQ
Sbjct: 221 RGRQLVVNLIPYNKTDVRDKLSCPSEEHMQEFRSIV-SSYGSFCSIRRTMGADIAGACGQ 279
Query: 180 LVV 182
LVV
Sbjct: 280 LVV 282
>gi|76787054|ref|YP_329191.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae A909]
gi|424049946|ref|ZP_17787497.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae ZQ0910]
gi|123730855|sp|Q3K2R2.1|RLMN_STRA1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|76562111|gb|ABA44695.1| radical SAM enzyme, Cfr family [Streptococcus agalactiae A909]
gi|389648522|gb|EIM70023.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
agalactiae ZQ0910]
Length = 368
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 171 IGEPFDNYTNVLKFLRTVNDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 229 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELAD 288
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 289 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKN-GVNCVVRQEHGTDIDA 347
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 348 ACGQLRSN 355
>gi|406038656|ref|ZP_11046011.1| hypothetical protein AursD1_02268 [Acinetobacter ursingii DSM 16037
= CIP 107286]
Length = 408
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 124/193 (64%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++++M + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 197 MGEPLLNYDAVLSSMQLMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDID-VALAISLHA 255
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PLE+L+ A + Y +++++ + IEY+MLDGVND +HA Q
Sbjct: 256 PNDELRNELVPINKKYPLEQLIAACQRYLAKGGNESTRKHVTIEYVMLDGVNDHPEHAQQ 315
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ +FQK L + + T+R+ G DI
Sbjct: 316 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKTLSDAGFV-CTIRQTRGDDID 373
Query: 175 GACGQLVVNLPDK 187
ACGQLV ++ D+
Sbjct: 374 AACGQLVGHVADR 386
>gi|344343058|ref|ZP_08773928.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
gi|343805610|gb|EGV23506.1| Ribosomal RNA large subunit methyltransferase N [Marichromatium
purpuratum 984]
Length = 364
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 123/189 (65%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V+A+ +M L + ++ +R+TVSTVGIV AI + ++ ++LAVSLHA
Sbjct: 162 MGEPLANFDAVVKAMAVMQDDLAYMLAKQRVTVSTVGIVPAIERLR-EVSDVSLAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PL +L+ A + Y + ++K+ EYIM+ G+ND HA QL +L
Sbjct: 221 PNDALRNELVPINRKYPLAELIPACRRYVAADKRRKVTWEYIMIAGLNDSIAHAKQLIRL 280
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE +NLIPFNP V + TS ++V +F++ L S I TT RK G++I+ ACG
Sbjct: 281 LEGTPSKINLIPFNPFPGVD-YATSPPEQVEAFRQRLIRSGLIATT-RKTRGEEIAAACG 338
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 339 QLVGRVQDR 347
>gi|335420573|ref|ZP_08551611.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
gi|334894932|gb|EGM33117.1| radical SAM protein [Salinisphaera shabanensis E1L3A]
Length = 393
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 111/184 (60%), Gaps = 6/184 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+RI+ F +S +R+TVST G+V +++ ++ + LAVSLHA
Sbjct: 187 MGEPLANYRAVVPAIRILLDDYGFGLSKRRVTVSTSGMVPFMDRLREEV-DVALAVSLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P D+R +++P R +PL +LM A Y + Q++ + EY++L+GVND + A L K
Sbjct: 246 PTDDLRDELVPINRKYPLAELMGACDRYVEGKQRRAHVVYEYVLLNGVNDNPEQARGLVK 305
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFN S + + ++ FQ IL +RTTVR+ G DI AC
Sbjct: 306 LLADRPAKINLIPFNAFDG-SGYTRPDEARIRQFQDILHNK-GLRTTVRRTRGDDIDAAC 363
Query: 178 GQLV 181
GQLV
Sbjct: 364 GQLV 367
>gi|422759427|ref|ZP_16813189.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412262|gb|EFY03170.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 360
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMSFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++VS+F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKS 192
ACGQL N K K+
Sbjct: 339 ACGQLRSNTMKKDREKA 355
>gi|344942369|ref|ZP_08781657.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
gi|344263561|gb|EGW23832.1| Ribosomal RNA large subunit methyltransferase N [Methylobacter
tundripaludum SV96]
Length = 370
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +M F +S +R+T+ST G+V A+ + + + ++LAVSLHA
Sbjct: 169 MGEPLLNFDNVVAAMNLMMDDFTFGLSKRRVTISTSGVVPAMYRL-TQVCDVSLAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R +++P + +PL++LM A ++ K + ++ + EY+MLDG+ND Q A L KL
Sbjct: 228 VTDELRDELVPINKKYPLKELMEACRDNAKIAPRRTVTFEYVMLDGINDSLQDARGLVKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+T +NLIPFNP + S +R SS + ++ F+ +L + I TTVRK G+DI ACG
Sbjct: 288 LKTVPSKINLIPFNPFPN-SAYRCSSKEAINCFKTLLNDA-GIVTTVRKTRGEDIDAACG 345
Query: 179 QLVVNLPDK 187
QLV + DK
Sbjct: 346 QLVGQVKDK 354
>gi|400289308|ref|ZP_10791338.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
ratti FA-1 = DSM 20564]
gi|399922267|gb|EJN95081.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
ratti FA-1 = DSM 20564]
Length = 361
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDHPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKS 192
ACGQL N + KS
Sbjct: 339 ACGQLRSNTMKRDRQKS 355
>gi|403049734|ref|ZP_10904218.1| radical SAM enzyme, Cfr family protein [SAR86 cluster bacterium
SAR86D]
Length = 361
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 120/194 (61%), Gaps = 6/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ ++E+ +IM + + +S KRIT+ST GI IN+ S++ ++LA+SLHA
Sbjct: 162 MGEPMLNFKPVIESAKIMKDQMAYSLSRKRITISTSGITPQINQLSSEID-VSLAISLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P+ +R +I+P + +P+++L+ + K+Y + + K I IEYI++DG+ND A +L +
Sbjct: 221 PIDSLRDKIVPINKKYPIKELIKSCKKYLADYEGKRSITIEYILIDGINDSIDFAKKLAR 280
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFNP S ++ SS + F+ IL S TT+R G + GAC
Sbjct: 281 LLSDVSCKINLIPFNPFEG-SSYKRSSQKNIEQFKSILM-SKGFITTLRVTRGDAVDGAC 338
Query: 178 GQLVVNLPDKISAK 191
GQLV L + I +K
Sbjct: 339 GQLVGKLNNSIKSK 352
>gi|339640348|ref|ZP_08661792.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
056 str. F0418]
gi|339453617|gb|EGP66232.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
056 str. F0418]
Length = 362
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 113/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F + +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFADEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y K + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFEAIEYYIKTTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|251782933|ref|YP_002997236.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|386317449|ref|YP_006013613.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495338|ref|YP_006905184.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
gi|417753581|ref|ZP_12401692.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|417928723|ref|ZP_12572111.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|242391563|dbj|BAH82022.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323127736|gb|ADX25033.1| radical SAM superfamily protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333769544|gb|EGL46656.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|340766597|gb|EGR89123.1| 23S rRNA m2A2503 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|410440498|emb|CCI63126.1| K06941 ribosomal RNA large subunit methyltransferase N
[Streptococcus dysgalactiae subsp. equisimilis AC-2713]
Length = 360
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMSFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++VS+F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKS 192
ACGQL N K K+
Sbjct: 339 ACGQLRSNTMKKDREKA 355
>gi|408402057|ref|YP_006860021.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968286|dbj|BAM61524.1| radical SAM family enzyme [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 360
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMSFLRTINDDNGLA--IGSRHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++VS+F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKS 192
ACGQL N K K+
Sbjct: 339 ACGQLRSNTMKKDREKA 355
>gi|379009435|ref|YP_005267248.1| 23S rRNA methyltransferase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
gi|375157959|gb|AFA41025.1| 23S rRNA methyltransferase [Wigglesworthia glossinidia endosymbiont
of Glossina morsitans morsitans (Yale colony)]
Length = 363
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 7/184 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ + I + F +S +RIT+ST GI H I L + LA+SLHA
Sbjct: 164 MGEPLLNLKQLISTINIILDNHGFNLSKRRITISTAGISHIIQNLGKVLD-VKLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R QIMP R + + L++A K+Y K +Q KI IEY+ML+ VND + HA+QL
Sbjct: 223 PNDILRNQIMPINRKYNICSLLSAAKKYISVSKANQGKISIEYVMLNKVNDSDNHAYQLK 282
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ F VNLIP+N I SQ++ S+ +++ F +IL+ + I TT+RKQ G I+ A
Sbjct: 283 NCLKNFPCKVNLIPWNCIPK-SQYKPSNKNQIKKFSQILKKN-GIITTIRKQRGDSINAA 340
Query: 177 CGQL 180
CGQL
Sbjct: 341 CGQL 344
>gi|374994652|ref|YP_004970151.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Desulfosporosinus orientis
DSM 765]
gi|357213018|gb|AET67636.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus orientis DSM
765]
Length = 352
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 112/183 (61%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L EA+R++ P R IT+ST G+ + F +NLA+SLHA
Sbjct: 163 IGEPFDNYENLAEAIRVLVEQKGISIPSRHITISTSGLADKLYDFADSDLNVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R ++MP R FP+E LM + Y + ++++I IEYIML +ND + A QL L+
Sbjct: 223 PDNELRTKLMPINRRFPIETLMQGINYYLEKTRRRITIEYIMLKDLNDSREAALQLAALI 282
Query: 120 ETF-QVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + Q+V VNLIP+NP+ SQ++ + D + +F +LR + I +R ++G DI AC
Sbjct: 283 KDWGQLVNVNLIPYNPVDEHSQYQRTDHDVLLAFYDVLR-KHGINCGIRLEIGSDIDAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|407938377|ref|YP_006854018.1| radical SAM protein [Acidovorax sp. KKS102]
gi|407896171|gb|AFU45380.1| radical SAM protein [Acidovorax sp. KKS102]
Length = 370
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 119/194 (61%), Gaps = 7/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+++M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYSALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+ +L++A Y Q + I EY MLDGVND+ +HA QL +L
Sbjct: 223 PNDPLRDNLVPLNRKYPISELLDACNRYLQHAPRDFITFEYCMLDGVNDQVEHARQLIEL 282
Query: 119 LET--FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++ + NLIPFNP + R S ++V +F K+L + I TTVRK G DI A
Sbjct: 283 VKRTGIRCKFNLIPFNPFPASGLLR-SPHNQVQAFAKMLSDA-GIITTVRKTRGDDIDAA 340
Query: 177 CGQLVVNLPDKISA 190
CGQL ++ D+ A
Sbjct: 341 CGQLAGDVKDRTRA 354
>gi|261409887|ref|YP_003246128.1| Cfr family radical SAM protein [Paenibacillus sp. Y412MC10]
gi|261286350|gb|ACX68321.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
Length = 353
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 117/185 (63%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY + + +R++ GL + P+ ITVST G+ + I +F G+NLA+SL
Sbjct: 163 IGEPFDNYENMSDFIRVIKDHKGLA--IGPRHITVSTSGLANKIVEFADSDLGVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM A+ Y + + ++I +EYI+L VND+ +HA +L +
Sbjct: 221 HAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNRRITLEYILLKDVNDQREHALELAE 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ S+ + +++F L+ I +VR + G DI
Sbjct: 281 LVGERRNLANVNLIPYNPVDEHSQYQRSTKESITAFYDTLKKQ-GISCSVRLEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|357638804|ref|ZP_09136677.1| 23S rRNA m2A2503 methyltransferase [Streptococcus urinalis 2285-97]
gi|418417443|ref|ZP_12990638.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
urinalis FB127-CNA-2]
gi|357587258|gb|EHJ56666.1| 23S rRNA m2A2503 methyltransferase [Streptococcus urinalis 2285-97]
gi|410871362|gb|EKS19310.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
urinalis FB127-CNA-2]
Length = 361
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 123/203 (60%), Gaps = 8/203 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIKEFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL +A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFDAIEYYIETTNRRVTFEYIMLNEVNDYPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F ++L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYQVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPVTD 198
ACGQL N K K+ +++
Sbjct: 339 ACGQLRSNTMKKDRQKAMVDISN 361
>gi|393201778|ref|YP_006463620.1| Fe-S-cluster redox enzyme [Solibacillus silvestris StLB046]
gi|406664655|ref|ZP_11072430.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
isronensis B3W22]
gi|327441109|dbj|BAK17474.1| predicted Fe-S-cluster redox enzyme [Solibacillus silvestris
StLB046]
gi|405387503|gb|EKB46927.1| Ribosomal RNA large subunit methyltransferase N [Bacillus
isronensis B3W22]
Length = 382
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 114/183 (62%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY A++ ++IM GL + + ITVST GIV I +F + +N AVSL
Sbjct: 194 IGEPFDNYDAMMNFLKIMNDDKGL--NIGARHITVSTSGIVPKIYEFADEGMQINFAVSL 251
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP Q+ R ++MP A+A+ LE+LM A+K Y K + +++ EY ++ G ND E+ A +L K
Sbjct: 252 HAPNQEARQKLMPIAKAYKLEELMEAVKYYTKKTGRRVTFEYGLMSGQNDTEEVAMELAK 311
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + RTS K+ +F++ L+ I T+R++ G DI+ AC
Sbjct: 312 LIKNIKCHVNLIPINYVPERDYIRTSR-SKIFAFERTLK-EQGINVTIRREQGADIAAAC 369
Query: 178 GQL 180
GQL
Sbjct: 370 GQL 372
>gi|325265757|ref|ZP_08132444.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
gi|324982740|gb|EGC18365.1| cfr family radical SAM enzyme [Kingella denitrificans ATCC 33394]
Length = 364
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ NY +V A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPMANYDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR +I+P + +PL++LM A Y K + I EY+MLDGVND+ +HAH+L +L
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLTKAPRDFITFEYVMLDGVNDKPEHAHELVQL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS+ ++ F++IL + + TTVRK G DI ACG
Sbjct: 282 VKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-GLVTTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|15803040|ref|NP_289070.1| ribosomal RNA large subunit methyltransferase N [Escherichia coli
O157:H7 str. EDL933]
gi|12516911|gb|AAG57627.1|AE005481_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 384
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKXXNXETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|225024692|ref|ZP_03713884.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
gi|224942581|gb|EEG23790.1| hypothetical protein EIKCOROL_01574 [Eikenella corrodens ATCC
23834]
Length = 363
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPLANYDNVVTALSIMLDDHGYALSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +I+P + +PL++LM A + Y K + + EY+MLDGVND+ +HA +L +L
Sbjct: 222 PNDAIRNEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGVNDKPEHARELLEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SSD+ + F+ IL + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYNRSSDENIRVFRDILYQA-GLVVTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|253996236|ref|YP_003048300.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
gi|253982915|gb|ACT47773.1| radical SAM enzyme, Cfr family [Methylotenera mobilis JLW8]
Length = 367
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 121/199 (60%), Gaps = 9/199 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A++IM + +S +R+T+ST G+V A+++ D P + LAVSLHA
Sbjct: 168 MGEPLANYDNVVTAMQIMLDDSAYGLSRRRVTLSTSGMVPAMDRLKEDCP-VALAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R I+P + +PL++LM A Y +K + + EY+MLDGVND +HAHQL +L
Sbjct: 227 PNDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLEL 286
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGAC 177
++ NLIPFNP + S + TS + V F+ IL + Y + TVRK G DI AC
Sbjct: 287 VKNVSCKFNLIPFNPFPN-SGYDTSKPNHVRVFRDILMQAGYVV--TVRKTRGDDIDAAC 343
Query: 178 GQLVVNLPDKI--SAKSTP 194
GQL + DK +A+ P
Sbjct: 344 GQLAGKVLDKTKRTARHIP 362
>gi|251799946|ref|YP_003014677.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
gi|247547572|gb|ACT04591.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
Length = 356
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 9/186 (4%)
Query: 1 MGEPLNNYAAL---VEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L + V+ GL + P+ ITVST G+ I +F G+NLAVSL
Sbjct: 163 IGEPFDNFIHLNDFLTTVKDHKGLA--IGPRHITVSTSGLADKIREFADKDQGVNLAVSL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RA P+EKLM+A+ Y + + ++I +EYI+L VND+ +HA +L +
Sbjct: 221 HAPNNELRTRIMKINRAIPIEKLMDAIDYYLERTNRRITLEYILLKDVNDQPEHALELAE 280
Query: 118 LLETFQ---VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L+ + V VNLIP+NP+ SQ++ S +D + F L+ ++ +VR + G DI
Sbjct: 281 LVGDRRRSLVNVNLIPYNPVDEHSQYQRSENDSIKGFYDTLK-KQDVSVSVRLEHGADID 339
Query: 175 GACGQL 180
ACGQL
Sbjct: 340 AACGQL 345
>gi|444910471|ref|ZP_21230655.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
gi|444719090|gb|ELW59889.1| Ribosomal RNA large subunit methyltransferase N [Cystobacter fuscus
DSM 2262]
Length = 362
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY + AV I+ L + P+ IT+STVG+V I + + + LAVSLH
Sbjct: 168 MGEPLHNYEGTLAAVDILVDALGLALGPRFITLSTVGVVPGIRRLADEDRPVQLAVSLHG 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R ++PAAR + L +LM+A + Y +++IF E+ ++ G ND + AH LG LL
Sbjct: 228 ATDAERGALVPAARKWSLAELMDACRYYTDKRKRRIFYEWALISGRNDTPEQAHALGALL 287
Query: 120 ETFQVVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIP NP +G Q S D V +FQ IL G Y + +TVR++ G DI CG
Sbjct: 288 QGMDAHVNLIPLNPTVGYAEQ--PSGPDSVRAFQDILAG-YGLPSTVRQRRGIDIDAGCG 344
Query: 179 QL 180
QL
Sbjct: 345 QL 346
>gi|398807426|ref|ZP_10566304.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
gi|398089436|gb|EJL79952.1| 23S rRNA methyltransferase [Variovorax sp. CF313]
Length = 382
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 7/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R M + +S +R+TVST G+V I++ +D P + +AVSLHA
Sbjct: 165 MGEPLQNYSALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGADCP-VAMAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+ +L+ A K Y ++ + I EY MLDGVND+ +HA QL +L
Sbjct: 224 PNDALRDDLVPLNRKYPIAELIEACKRYLAHAPRDFITFEYCMLDGVNDQPEHARQLIEL 283
Query: 119 LETFQVVV--NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ T + NLIPFNP + R S +V +F + L + TTVRK G DI A
Sbjct: 284 VRTHGISCKFNLIPFNPFPASGLLR-SPQPRVLAFARTL-SEAGLVTTVRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDKISA 190
CGQL ++ D+ A
Sbjct: 342 CGQLAGDVKDRTRA 355
>gi|330446674|ref|ZP_08310326.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490865|dbj|GAA04823.1| 23S rRNA m2A2503 methyltransferase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 373
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +E ++A++ Y ++ + ++ +EY++LD VND+ +HA QL
Sbjct: 226 PTDELRSQIMPINNRWDIETFLDAVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK G DI A
Sbjct: 286 KVLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDFTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|336179481|ref|YP_004584856.1| ribosomal RNA large subunit methyltransferase N [Frankia symbiont
of Datisca glomerata]
gi|334860461|gb|AEH10935.1| Ribosomal RNA large subunit methyltransferase N [Frankia symbiont
of Datisca glomerata]
Length = 413
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 115/198 (58%), Gaps = 9/198 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKF-HSDLPGLNLAVS 56
MGEPL NYA +V A+R++T P +S + ITVSTVG+V AI + + LP + LAVS
Sbjct: 209 MGEPLANYATVVAALRVLTAPPPAGLGLSARSITVSTVGLVPAIRRLAGAGLP-VTLAVS 267
Query: 57 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
LHAP ++R ++P R +P+ +++ A EY + + +++ IEY ++D VND+ + A L
Sbjct: 268 LHAPDDELRDSLVPVNRRWPVAEVLTAAWEYAETTGRRVSIEYALIDDVNDQPERADALA 327
Query: 117 KLLETFQVVVNLIPFNPIGSVS-QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL VNLIP NP VS Q ++ + LRG I TVR G+DI+
Sbjct: 328 DLLVGRLAHVNLIPLNPTRGVSWQASERRREREFVRRLRLRG---ITATVRDTRGRDIAA 384
Query: 176 ACGQLVVNLPDKISAKST 193
ACGQL + P +S T
Sbjct: 385 ACGQLAADAPTGLSGPGT 402
>gi|296104196|ref|YP_003614342.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058655|gb|ADF63393.1| 23S rRNA methyltransferase [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 388
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|37521648|ref|NP_925025.1| hypothetical protein gll2079 [Gloeobacter violaceus PCC 7421]
gi|81709852|sp|Q7NIV3.1|RLMN_GLOVI RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|35212646|dbj|BAC90020.1| gll2079 [Gloeobacter violaceus PCC 7421]
Length = 348
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 114/180 (63%), Gaps = 3/180 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPL N A+V+A+R++ G + ++ITVSTVG+ I + + + LAVSLHAP
Sbjct: 156 MGEPLLNLGAVVQALRVLNG-DIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAP 214
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
QD+R +++P A+ +P+E+L+ ++Y + + +++ EY +L G+NDE HA +L +L
Sbjct: 215 NQDLRLKLIPTAQHYPIEELLEDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAILR 274
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
FQ VNLIP+NPI V ++ + +V +F++ L + I +VR G + + ACGQL
Sbjct: 275 GFQSHVNLIPYNPIEGV-EYERPGEARVRAFERELV-RHKIAASVRHTRGLEEAAACGQL 332
>gi|422849202|ref|ZP_16895878.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115]
gi|325690223|gb|EGD32227.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK115]
Length = 362
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F IL+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDILKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|291530132|emb|CBK95717.1| radical SAM enzyme, Cfr family [Eubacterium siraeum 70/3]
Length = 345
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 120/197 (60%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
+GEP +NY AL + + I+T +P ++ K ITVST G+ F NLAVSLH
Sbjct: 155 IGEPFDNYDALCDFLDIVT-VPGGIEIGTKHITVSTCGLCDKTELFAKRKEPCNLAVSLH 213
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R ++MP R + + +++ + K Y + + +K+ +EYI+LDG+ND ++A QL L
Sbjct: 214 APDDEIRNRLMPINRRYSISQVIESAKYYVERTNRKVLLEYILLDGINDSRENARQLAAL 273
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ ++ VNLIP+NP S+F+ SS++ +++F L+ + I T RK+ G ++S ACG
Sbjct: 274 IGNARLFVNLIPYNP-SPDSEFKRSSEENITAFYDELKKN-RINVTRRKEFGTELSAACG 331
Query: 179 QLVVNLPDKISAKSTPP 195
QL D+IS + P
Sbjct: 332 QL---RSDRISGEHKVP 345
>gi|344338112|ref|ZP_08769045.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
gi|343802166|gb|EGV20107.1| Ribosomal RNA large subunit methyltransferase N [Thiocapsa marina
5811]
Length = 376
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 119/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V+A+ IM + ++ R+T+ST GIV I + ++ ++LAVSLHA
Sbjct: 162 MGEPLANFDAVVKAMDIMQDDFAYMIAKTRLTLSTSGIVPNIYRLR-EVSDVSLAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PL +L+ A K Y + +++I EY+MLDG+ND HA Q+ +L
Sbjct: 221 PNDALRDELVPINRKYPLAELLPACKAYVGADKRRRITWEYVMLDGINDSLAHAKQMIRL 280
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE VNLIPFNP +Q+ TS +++ +F+ L G+ I T RK G +I+ ACG
Sbjct: 281 LEGIPSKVNLIPFNPFPG-NQYGTSPPERIEAFRARLAGA-GIFTMTRKTRGDEIAAACG 338
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 339 QLVGRVEDR 347
>gi|50914628|ref|YP_060600.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS10394]
gi|139473446|ref|YP_001128162.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes str. Manfredo]
gi|81371810|sp|Q5XAZ6.1|RLMN_STRP6 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|205829905|sp|A2RDK1.1|RLMN_STRPG RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|50903702|gb|AAT87417.1| Florfenicol resistance protein [Streptococcus pyogenes MGAS10394]
gi|134271693|emb|CAM29926.1| radical SAM superfamily protein [Streptococcus pyogenes str.
Manfredo]
Length = 359
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVMCFLRVINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R +IM R+FPLEKL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L +T + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|335038848|ref|ZP_08532050.1| Ribosomal RNA large subunit methyltransferase N [Caldalkalibacillus
thermarum TA2.A1]
gi|334181264|gb|EGL83827.1| Ribosomal RNA large subunit methyltransferase N [Caldalkalibacillus
thermarum TA2.A1]
Length = 355
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY L++ +RI+ GL + +RITVST GIV I +F +NLA+SL
Sbjct: 162 IGEPFDNYDHLMDFLRIINDQDGLA--IGARRITVSTSGIVPKIYQFADANLQVNLAISL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM RA+PL++LM A + Y + ++I EYI+L VND +Q A QL
Sbjct: 220 HAPNDELRTQIMKINRAYPLKELMRACQYYVAKTNRRITFEYILLKDVNDHKQEALQLAD 279
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + V VNLIP+NP+ Q++ S+ V +F + L+ I +R++ G DI
Sbjct: 280 LIGDMRHLVYVNLIPYNPVAEHQQYQRSTPQAVQAFYETLKAK-GINCGIRREHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|329926694|ref|ZP_08281104.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|328939034|gb|EGG35400.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 353
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 116/185 (62%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY + + +R++ GL + P+ ITVST G+ + I +F G+NLA+SL
Sbjct: 163 IGEPFDNYENMSDFIRVIKDHKGLA--IGPRHITVSTSGLANKIVEFADSDLGVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM A+ Y + + ++I +EYI+L VND+ +HA +L +
Sbjct: 221 HAPNDEIRTRIMKINKAIPIEKLMAAIDYYLEKTNRRITLEYILLKDVNDQREHALELAE 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ S+ + ++ F L+ I +VR + G DI
Sbjct: 281 LVGERRNLANVNLIPYNPVDEHSQYQRSTKESITGFYDTLKKQ-GISCSVRLEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|326316277|ref|YP_004233949.1| radical SAM family protein [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373113|gb|ADX45382.1| radical SAM enzyme, Cfr family [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 373
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R M + +S +R+TVST G+V +++ D + +AVSLHA
Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AVAMAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P R +PL +L++A Y +++ + I EY MLDGVND+ +HA QL L
Sbjct: 223 PNDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDL 282
Query: 119 L-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ E + NLIPFNP S S+ +V++F K+L + I TTVRK G DI
Sbjct: 283 VRPRGAEGVRCKFNLIPFNPF-PASGLHRSNPGQVAAFAKLLSDA-GIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 341 DAACGQLAGDVKDRTRA 357
>gi|387930290|gb|AFK11687.1| ribosomal RNA large subunit methyltransferase [Gallibacterium
anatis]
Length = 372
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + +V A+ IM + +S +R+T+ST G+V A++K ++ + LA+SLHA
Sbjct: 166 MGEPLLNVSNVVPAMEIMLDDFGYGLSKRRVTLSTSGVVPALDKL-GEMIDVALAISLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E LM+++ Y K S K+ IEY+MLD VNDE +HAHQL
Sbjct: 225 PNDELRNEIVPLNKKYNIEMLMDSVNRYLKISNANHGKVTIEYVMLDHVNDEVEHAHQLA 284
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIP+NP + + S++ ++ FQK L Y VRK G DI A
Sbjct: 285 KVLKNTPCKINLIPWNPFPE-APYNKSTNTRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 342
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 343 CGQLAGDVIDR 353
>gi|94988886|ref|YP_596987.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS9429]
gi|94992778|ref|YP_600877.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS2096]
gi|417856555|ref|ZP_12501614.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes HKU QMH11M0907901]
gi|122986917|sp|Q1JAS5.1|RLMN_STRPB RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123382514|sp|Q1JKX6.1|RLMN_STRPC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|94542394|gb|ABF32443.1| radical SAM family enzyme [Streptococcus pyogenes MGAS9429]
gi|94546286|gb|ABF36333.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS2096]
gi|387933510|gb|EIK41623.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes HKU QMH11M0907901]
Length = 359
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVMCFLRVINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R +IM R+FPLEKL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSRIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L +T + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSLKERVLAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|407004067|gb|EKE20529.1| hypothetical protein ACD_7C00539G0003 [uncultured bacterium]
Length = 340
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A+VE++ +I F +S +RITVSTVGI+ I K +NLA+S+HA
Sbjct: 156 MGEPLLNLDAVVESIEKISDKTKFNISQRRITVSTVGILENIRKLKERNLKVNLALSVHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +I+P ++ + L+ L+N L+ Y + +++ I EYI++D +ND +HA +L LL
Sbjct: 216 PNDELRNKIIPFSKKYKLKDLINELRLYFETTKRDISFEYILIDDLNDSIEHAKELAALL 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ Q +NLIP+NPI S ++ + KV+ F++ L N+ + R G DI+ ACGQ
Sbjct: 276 KNIQCSINLIPYNPIDGFS-YKKPNSAKVNKFKEYL-ACCNMVVSQRYTKGDDIAAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|120610108|ref|YP_969786.1| radical SAM protein [Acidovorax citrulli AAC00-1]
gi|205829658|sp|A1TM24.1|RLMN_ACIAC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120588572|gb|ABM32012.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax citrulli AAC00-1]
Length = 373
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R M + +S +R+TVST G+V +++ D + +AVSLHA
Sbjct: 164 MGEPLQNYTALVPALRTMLDDHGYGLSRRRLTVSTSGVVPMMDRLSQDC-AVAMAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P R +PL +L++A Y +++ + I EY MLDGVND+ +HA QL L
Sbjct: 223 PNDALRDQLVPLNRKYPLRELLDACTRYLEHAPRDFITFEYCMLDGVNDQPEHARQLIDL 282
Query: 119 L-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ E + NLIPFNP S S+ +V++F K+L + I TTVRK G DI
Sbjct: 283 VRPRGGEGVRCKFNLIPFNPF-PASGLHRSNPQQVAAFAKMLSDA-GIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 341 DAACGQLAGDVKDRTRA 357
>gi|332530539|ref|ZP_08406478.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
gi|332040014|gb|EGI76401.1| radical sam enzyme, cfr family protein [Hylemonella gracilis ATCC
19624]
Length = 404
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 120/205 (58%), Gaps = 16/205 (7%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYAALV A+R+M + +S +R+TVST G+V + + D P + LAVSLHA
Sbjct: 171 MGEPLQNYAALVPALRVMLDDHGYGLSRRRLTVSTSGVVPMMERLSEDCP-VALAVSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+ +L++ Y ++ + I EY MLDGVND+ +HA +L L
Sbjct: 230 PNDGLRDGLVPLNRKYPIHELLDTCLSYLAHAPRDFITFEYCMLDGVNDQPEHARELLAL 289
Query: 119 LETFQ-----------VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 167
++ F+ +NLIPFNP S + S ++V +F KIL + I TTVRK
Sbjct: 290 MQVFRQRAADLGHGVGCKLNLIPFNPFPE-SGLKRSPGERVQAFAKILLEA-GIVTTVRK 347
Query: 168 QMGQDISGACGQLVVNLPDKISAKS 192
G DI ACGQL ++ D+ S +
Sbjct: 348 TRGDDIDAACGQLAGDVQDRTSVDA 372
>gi|269103278|ref|ZP_06155975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163176|gb|EEZ41672.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 372
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLLPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +E+ ++A++ Y ++ + ++ +EY++LD +ND+ +HA QL
Sbjct: 226 PTDELRSQIMPINNRWNIEEFLDAVRRYVNSTNANRGRVTVEYVLLDHINDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP S + S+ ++ F K L Y+I TVRK G DI A
Sbjct: 286 KVLKDTPAKINLIPFNPYPG-SPYNKPSNSRIDRFMKTLM-EYDITVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|404375858|ref|ZP_10981038.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
gi|404290621|gb|EJZ47528.1| ribosomal RNA large subunit methyltransferase N [Escherichia sp.
1_1_43]
Length = 384
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND + AHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEQAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>gi|374580707|ref|ZP_09653801.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
gi|374416789|gb|EHQ89224.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus youngiae DSM
17734]
Length = 351
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 114/183 (62%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NYA + +A+RI+T P R ITVST G+ I +F +NLA+SLHA
Sbjct: 163 IGEPFDNYANVTDALRIITDHKGLAIPGRHITVSTSGLADKIYEFADSDLKVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R QIM R FP+EKL+ AL+ Y +++++ +EYI++ +ND+ +HA QL +L
Sbjct: 223 PTNQLRGQIMKINRVFPIEKLIRALEYYLNKTKRRVTLEYILIKDLNDQREHALQLCQLT 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q++ S + + +F +L+ ++ ++R + G+DI AC
Sbjct: 283 ANMRQLINVNLIPYNPVDEHQQYQRSDHETMLAFYDVLKKQ-GMKCSIRLEHGRDIDAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|148359081|ref|YP_001250288.1| Cfr family transporter radical SAM protein [Legionella pneumophila
str. Corby]
gi|296107129|ref|YP_003618829.1| radical SAM protein [Legionella pneumophila 2300/99 Alcoy]
gi|205829782|sp|A5IC42.1|RLMN_LEGPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|148280854|gb|ABQ54942.1| radical SAM enzyme, Cfr family [Legionella pneumophila str. Corby]
gi|295649030|gb|ADG24877.1| radical SAM enzyme, Cfr family [Legionella pneumophila 2300/99
Alcoy]
Length = 382
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 121/192 (63%), Gaps = 7/192 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMSIMMDDLAYGLSKRRVTLSTSGVLPEMERLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L++ K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PTDELRNELVPINKKYPLSQLISLCKRYFKDEPRRKVTFEYVMLKGVNDQPEHASQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGAC 177
L VNLIPFNP ++Q++ SS + + +F+ K+++ + I T RK G DI AC
Sbjct: 286 LHNVPAKVNLIPFNPF-PLTQYQRSSRETIDAFRDKLIK--HGINTITRKTRGDDIDAAC 342
Query: 178 GQLVVNLPDKIS 189
GQL + DK +
Sbjct: 343 GQLAGEVKDKTT 354
>gi|381400771|ref|ZP_09925691.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
gi|380834257|gb|EIC14105.1| ribosomal RNA large subunit methyltransferase N [Kingella kingae
PYKK081]
Length = 364
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR +I+P + +PL++LM A Y K + I EY+MLDGVND+ +HA +L +L
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS+ ++ F++IL + N+ TTVRK G DI ACG
Sbjct: 282 VKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-NLVTTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVKDK 348
>gi|222153431|ref|YP_002562608.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
uberis 0140J]
gi|254807218|sp|B9DUW7.1|RLMN_STRU0 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|222114244|emb|CAR42840.1| radical SAM superfamily protein [Streptococcus uberis 0140J]
Length = 361
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 8/203 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVMKFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V++F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPVTD 198
ACGQL N K K V D
Sbjct: 339 ACGQLRSNTMKKDRQKVVAAVAD 361
>gi|423115572|ref|ZP_17103263.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
gi|376380962|gb|EHS93703.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5245]
Length = 388
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|392988680|ref|YP_006487273.1| ribosomal RNA large subunit methyltransferase N [Enterococcus hirae
ATCC 9790]
gi|392336100|gb|AFM70382.1| ribosomal RNA large subunit methyltransferase N [Enterococcus hirae
ATCC 9790]
Length = 357
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 108/183 (59%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ + I+ + + ITVST G+ + I +F + +NLA+SLHA
Sbjct: 163 IGEPFDNYDNVMNFLHIINDAKGLAIGARHITVSTSGLANKIKEFADNGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM R+FP+EKLM A+ EY + + ++I EYIML+ VND +HA QL LL
Sbjct: 223 PNNEIRTSIMRINRSFPIEKLMAAVDEYLEKTNRRITFEYIMLNQVNDRPEHAQQLADLL 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q+ S V F +L+ + I +RK+ G DI AC
Sbjct: 283 KDKKKLTYVNLIPYNPVSEHDQYSRSPKADVLKFYDVLKKN-GINCVIRKEHGTDIDAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|196247685|ref|ZP_03146387.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
gi|196212469|gb|EDY07226.1| radical SAM enzyme, Cfr family [Geobacillus sp. G11MC16]
Length = 366
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY AL++ +RI+ + + ITVST GI+ I +F + +N A+SLHA
Sbjct: 178 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R ++MP +A+PL KLM A++ Y + + +++ EY + GVND+ +HA QL +LL
Sbjct: 238 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGRRVTFEYGLFGGVNDQLEHAEQLAELL 297
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP N + + RT +++ +F++ L+ + I T+R++ G DI ACGQ
Sbjct: 298 KGLKCHVNLIPVNYVPERNYVRTPR-NQIFAFERALK-KHGINVTIRREHGHDIDAACGQ 355
Query: 180 L 180
L
Sbjct: 356 L 356
>gi|238912645|ref|ZP_04656482.1| hypothetical protein SentesTe_16142 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 388
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K + + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGY-MIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|423121604|ref|ZP_17109288.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
gi|376393983|gb|EHT06637.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5246]
Length = 388
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|285808444|gb|ADC35970.1| conserved hypothetical protein [uncultured bacterium 98]
Length = 358
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 3/191 (1%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ++A+R++ + +SP+R+T+STVGIV + + + NLAVSLHA
Sbjct: 161 MGEPLHNYDNTMKALRMLHSEHGLSISPRRVTLSTVGIVPGLERLAREPLMPNLAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ R ++P R +PL ++ A + + + +I EY++LDGVND + A +L +LL
Sbjct: 221 TTDEQRSALVPPNRKYPLADIIAACQRFPLKQRSRITFEYVLLDGVNDSPEDARRLVRLL 280
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP NP + F SD +V F +IL ++ +VRK GQDI ACGQ
Sbjct: 281 AGIRAKVNLIPLNPAPGIP-FERPSDARVDRFAQIL-ADRHLTVSVRKSRGQDIRAACGQ 338
Query: 180 LVVNLPDKISA 190
L+V+ K SA
Sbjct: 339 LIVDGGIKKSA 349
>gi|138894695|ref|YP_001125148.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermodenitrificans NG80-2]
gi|205829768|sp|A4IM49.1|RLMN_GEOTN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|134266208|gb|ABO66403.1| Radical SAM family enzyme [Geobacillus thermodenitrificans NG80-2]
Length = 364
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY AL++ +RI+ + + ITVST GI+ I +F + +N A+SLHA
Sbjct: 176 IGEPFDNYDALIKFLRIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQINFAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R ++MP +A+PL KLM A++ Y + + +++ EY + GVND+ +HA QL +LL
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMEAVRYYIEKTGRRVTFEYGLFGGVNDQLEHAEQLAELL 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP N + + RT +++ +F++ L+ + I T+R++ G DI ACGQ
Sbjct: 296 KGLKCHVNLIPVNYVPERNYVRTPR-NQIFAFERALK-KHGINVTIRREHGHDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|167751032|ref|ZP_02423159.1| hypothetical protein EUBSIR_02017 [Eubacterium siraeum DSM 15702]
gi|167655950|gb|EDS00080.1| 23S rRNA m2A2503 methyltransferase [Eubacterium siraeum DSM 15702]
Length = 345
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 119/197 (60%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
+GEP +NY AL + + I+T +P + K ITVST G+ F NLAVSLH
Sbjct: 155 IGEPFDNYDALCDFLDIVT-VPGGIETGTKHITVSTCGLCDKTKLFAERKEPCNLAVSLH 213
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R ++MP R + + +++ + K Y + + +K+ +EYI+LDG+ND ++A QL L
Sbjct: 214 APDDEIRNRLMPVNRRYSISQVIESAKYYVERTNRKVLLEYILLDGINDSRENARQLAAL 273
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ ++ VNLIP+NP S+F+ SS++ +++F L+ + I T RK+ G ++S ACG
Sbjct: 274 IGNARLFVNLIPYNP-SPDSEFKRSSEENITAFYDELKKN-RINVTRRKEFGTELSAACG 331
Query: 179 QLVVNLPDKISAKSTPP 195
QL D+IS + P
Sbjct: 332 QL---RSDRISGEHKVP 345
>gi|381159927|ref|ZP_09869159.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
gi|380877991|gb|EIC20083.1| 23S rRNA m2A2503 methyltransferase [Thiorhodovibrio sp. 970]
Length = 368
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 5/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V+A+ +M L + ++ R+T+ST G+V I + ++ ++LAVSLHA
Sbjct: 166 MGEPLANFDAVVQAMAVMQHDLAYMLAKTRVTLSTSGLVPNIYRL-KEVADVSLAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PLE+L+ A K Y + +++I EY+MLDGVND HA L +L
Sbjct: 225 PDNALRDELVPINRKYPLEELIPACKAYAGSDKRRRITWEYVMLDGVNDSLAHAKALIRL 284
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE VNLIPFNP S F TS ++V +F+ L G+ + TT RK G I+ ACG
Sbjct: 285 LEGVPSKVNLIPFNPFAG-SGFATSPPERVDAFRLRLIGA-GLVTTTRKTRGDGIAAACG 342
Query: 179 QLV 181
QLV
Sbjct: 343 QLV 345
>gi|15675432|ref|NP_269606.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes SF370]
gi|21910720|ref|NP_664988.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS315]
gi|28895590|ref|NP_801940.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes SSI-1]
gi|56807972|ref|ZP_00365785.1| COG0820: Predicted Fe-S-cluster redox enzyme [Streptococcus
pyogenes M49 591]
gi|71903862|ref|YP_280665.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS6180]
gi|71911074|ref|YP_282624.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS5005]
gi|94994765|ref|YP_602863.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS10750]
gi|209559696|ref|YP_002286168.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes NZ131]
gi|383480286|ref|YP_005389180.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS15252]
gi|383494268|ref|YP_005411944.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS1882]
gi|386363063|ref|YP_006072394.1| radical SAM superfamily protein [Streptococcus pyogenes Alab49]
gi|410680928|ref|YP_006933330.1| radical SAM superfamily protein [Streptococcus pyogenes A20]
gi|421892226|ref|ZP_16322919.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes NS88.2]
gi|81620716|sp|Q99YU5.1|RLMN_STRP1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|122986830|sp|Q1J5R7.1|RLMN_STRPF RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|123747764|sp|Q48SK0.1|RLMN_STRPM RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|254807217|sp|B5XMB1.1|RLMN_STRPZ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|342179216|sp|P0DF10.1|RLMN_STRP3 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|342179217|sp|P0DF11.1|RLMN_STRPQ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|13622621|gb|AAK34327.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|21904923|gb|AAM79791.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810839|dbj|BAC63773.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|71802957|gb|AAX72310.1| radical SAM family enzyme [Streptococcus pyogenes MGAS6180]
gi|71853856|gb|AAZ51879.1| radical SAM family enzyme [Streptococcus pyogenes MGAS5005]
gi|94548273|gb|ABF38319.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10750]
gi|209540897|gb|ACI61473.1| hypothetical protein Spy49_1185c [Streptococcus pyogenes NZ131]
gi|350277472|gb|AEQ24840.1| radical SAM superfamily protein [Streptococcus pyogenes Alab49]
gi|378928276|gb|AFC66482.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS15252]
gi|378929995|gb|AFC68412.1| ribosomal RNA large subunit methyltransferase (N) RmlN
[Streptococcus pyogenes MGAS1882]
gi|379982022|emb|CCG26641.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes NS88.2]
gi|395454317|dbj|BAM30656.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes M1 476]
gi|409693517|gb|AFV38377.1| radical SAM superfamily protein [Streptococcus pyogenes A20]
Length = 359
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVMCFLRVINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L +T + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|372270406|ref|ZP_09506454.1| radical SAM protein [Marinobacterium stanieri S30]
Length = 377
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 123/191 (64%), Gaps = 8/191 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+A ++M + +S +R+T+ST G+V A++K S + ++LA+SLHA
Sbjct: 168 MGEPLMNFENVVDATQLMMDDNAYGLSKRRVTLSTAGVVPALDKL-SQVSDVSLAISLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R Q++P + +P+E+L+ A Y ++ ++ +EY ++DGVND+ +HA +L K
Sbjct: 227 PNNELRDQLVPINKRYPIEELIAASNRYLESLPDKRAATVEYTLIDGVNDQPEHARELAK 286
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIPFNP + S +R S+ + F+ IL R S I TTVR+ G D+ A
Sbjct: 287 LLKQLPCKLNLIPFNPFPN-SGYRRPSEQAIQRFKDILVRAS--IITTVRRTRGDDVDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 344 CGQLVGQVEDR 354
>gi|450088559|ref|ZP_21854846.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NV1996]
gi|449216470|gb|EMC16588.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
mutans NV1996]
Length = 361
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|375262232|ref|YP_005021402.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|397659355|ref|YP_006500057.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402844577|ref|ZP_10892929.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|421726692|ref|ZP_16165861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
gi|423104272|ref|ZP_17091974.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|423125188|ref|ZP_17112867.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|365911710|gb|AEX07163.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
KCTC 1686]
gi|376384135|gb|EHS96861.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5242]
gi|376399439|gb|EHT12054.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5250]
gi|394347547|gb|AFN33668.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
E718]
gi|402273534|gb|EJU22731.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. OBRC7]
gi|410372419|gb|EKP27131.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
M5al]
Length = 388
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|311748631|ref|ZP_07722416.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
gi|126577157|gb|EAZ81405.1| radical SAM enzyme, Cfr family [Algoriphagus sp. PR1]
Length = 352
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYA ++ A+ +I + ++ +RIT+STVG+ I K D NLAVSLH+
Sbjct: 165 MGEPLLNYANVLAAIDKITSPEGLGMAARRITLSTVGVTKMIRKMADDEVKFNLAVSLHS 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP + P+E+L +LK + K + +K+ EY++ DGVND+E+HA L K
Sbjct: 225 AINETRSRLMPINDSNPVEELGESLKYWYKKTGRKVTYEYVIWDGVNDDERHARALAKFC 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI +FR + + V + ++L S + VRK GQDI ACGQ
Sbjct: 285 KLIPSKVNIIQYNPIDE-GEFRQAKQEAVDMYIRVLE-SQGVIAKVRKSRGQDIDAACGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|32491320|ref|NP_871574.1| hypothetical protein WGLp571 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|81741588|sp|Q8D1Y5.1|RLMN_WIGBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|25166527|dbj|BAC24717.1| yfgB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 382
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 124/196 (63%), Gaps = 7/196 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N LV A++I + F +S +RIT+ST GI I K L + LA+SLHA
Sbjct: 186 MGEPLLNLKNLVPAIKIILDNYGFGLSKRRITISTAGISPVIKKL-GKLIDVKLAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + + ++ ++ + K+Y K ++ KI IEYIML+ +ND+ +HA+QL
Sbjct: 245 PNDIIRNKIMPINKKYNIKSILLSAKKYISTSKANKGKISIEYIMLNEINDKTEHAYQLI 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ +NLIP+NP V +++ S+ +K+++F KIL + I TT+RKQ G DI A
Sbjct: 305 NCLKNIPCKINLIPWNPFPYV-KYKCSNFNKINNFYKILI-KHGITTTIRKQRGIDIKAA 362
Query: 177 CGQLVVNLPDKISAKS 192
CGQL N+ ++I+ ++
Sbjct: 363 CGQLSGNVINRINKRN 378
>gi|423109698|ref|ZP_17097393.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
gi|376381266|gb|EHS94004.1| ribosomal RNA large subunit methyltransferase N [Klebsiella oxytoca
10-5243]
Length = 388
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|262280923|ref|ZP_06058706.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
gi|262257823|gb|EEY76558.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
calcoaceticus RUH2202]
Length = 411
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 122/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDID-VALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y ++S++ + IEY+ML+GVND +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESSRKHVTIEYVMLEGVNDHPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|123257976|sp|Q1JG02.1|RLMN_STRPD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|94544294|gb|ABF34342.1| Radical SAM family enzyme [Streptococcus pyogenes MGAS10270]
Length = 359
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVMCFLRVINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L +T + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|338530141|ref|YP_004663475.1| radical SAM protein [Myxococcus fulvus HW-1]
gi|337256237|gb|AEI62397.1| radical SAM protein [Myxococcus fulvus HW-1]
Length = 359
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY + AV ++ + + P+ IT+STVG+V I + + ++LAVSLH
Sbjct: 165 MGEPLHNYEHTMSAVDVLVDAMGLAMGPRFITLSTVGVVPGIRRLADEERPIHLAVSLHG 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R ++PA R +PL++LM+A + Y + +++IF E+ ++ G ND +HAH LG+LL
Sbjct: 225 ATDAERAALVPAGRRWPLDELMDACRYYSEKRKRRIFFEWTLISGRNDTAEHAHTLGQLL 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+IP NP S + V +FQ +L +Y + +TVR++ G DI CGQ
Sbjct: 285 QGMDAHVNVIPLNPTVGYDGG-PSRPESVRAFQDVL-AAYEVPSTVRQRRGIDIDAGCGQ 342
Query: 180 L 180
L
Sbjct: 343 L 343
>gi|19746482|ref|NP_607618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pyogenes MGAS8232]
gi|81632611|sp|Q8P058.1|RLMN_STRP8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|19748687|gb|AAL98117.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 359
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVMCFLRVINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L +T + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|407478596|ref|YP_006792473.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
antarcticum B7]
gi|407062675|gb|AFS71865.1| Ribosomal RNA large subunit methyltransferase N [Exiguobacterium
antarcticum B7]
Length = 357
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ +V+ + ++ GL + + ITVST G+ I KF +NLA+SL
Sbjct: 163 IGEPFDNFDNMVDFLNVIKDHNGLA--IGARHITVSTSGLADKIYKFADLKLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM RA PLEKLM A+ Y K + +KI IEYI+L GVND++ A +L K
Sbjct: 221 HAPNNELRTQIMKINRAIPLEKLMPAIDYYVKTTNRKITIEYILLRGVNDQKAQAIELAK 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L E + VNLIP+NP+ Q++ S+ + +S+F L+ + + VR + G DI
Sbjct: 281 LFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDISAFYDTLKKN-GLNCGVRLEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|296534699|ref|ZP_06897089.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
gi|296264972|gb|EFH11207.1| cfr family radical SAM enzyme [Roseomonas cervicalis ATCC 49957]
Length = 409
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 115/182 (63%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M G +S +RIT+ST G+V +++ ++L G+ LAVSLHA
Sbjct: 208 MGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGAEL-GVGLAVSLHA 266
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKL 118
D+R +I+P R +P+E+LM A + Y S ++I EY+ML GVND E A +L +L
Sbjct: 267 VRNDIRDEIVPLNRKYPIEELMAACRRYPGASNARRITFEYVMLKGVNDSEADARELVRL 326
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIPFNP S + TSS++ + F +I++ + + +R G+DI ACG
Sbjct: 327 LQGIPAKVNLIPFNPWPG-SPYETSSNNAIHRFARIVQEA-GYASPIRTPRGRDILAACG 384
Query: 179 QL 180
QL
Sbjct: 385 QL 386
>gi|424743184|ref|ZP_18171497.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
gi|422943445|gb|EKU38461.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-141]
Length = 411
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 123/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDID-VALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y +++++ + IEY+ML+GVND+ +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|302389594|ref|YP_003825415.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
gi|302200222|gb|ADL07792.1| 23S rRNA m(2)A-2503 methyltransferase [Thermosediminibacter oceani
DSM 16646]
Length = 346
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL NY L++ + I+ L F +S +RITVST GIV I + + + L+VSLHAP
Sbjct: 159 GEPLLNYDELIKFLNIINSPLAFNISYRRITVSTCGIVPEIRRLADEGLPITLSVSLHAP 218
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
D+R +++P R +P+ +L++A K Y + ++I EY ++ VND ++ A +L +LL+
Sbjct: 219 EDDLRDKLVPVNRRYPILELLDACKYYIIKTNRRITFEYALISDVNDSKECAVKLARLLK 278
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NP+ F S + + FQ+ILR Y I TVR++MG DI ACGQL
Sbjct: 279 GLLCHVNLIPLNPVRE-RDFMRSKPENIRLFQEILR-HYGISVTVRQEMGADIEAACGQL 336
>gi|172058977|ref|YP_001815437.1| ribosomal RNA large subunit methyltransferase N [Exiguobacterium
sibiricum 255-15]
gi|205829757|sp|B1YG36.1|RLMN_EXIS2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|171991498|gb|ACB62420.1| radical SAM enzyme, Cfr family [Exiguobacterium sibiricum 255-15]
Length = 357
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ +V+ + ++ GL + + ITVST G+ I KF +NLA+SL
Sbjct: 163 IGEPFDNFDNMVDFLNVIKDHNGLA--IGARHITVSTSGLADKIYKFADLKLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM RA PLEKLM A+ Y K + +KI IEYI+L GVND++ A +L K
Sbjct: 221 HAPNNELRTQIMKINRAIPLEKLMPAIDYYVKTTNRKITIEYILLRGVNDQKAQAIELAK 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L E + VNLIP+NP+ Q++ S+ + +S+F L+ + + VR + G DI
Sbjct: 281 LFEDKRHLTYVNLIPYNPVDEHGQYQRSTSEDISTFYDTLKKN-GLNCGVRLEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|189218104|ref|YP_001938746.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
gi|189184962|gb|ACD82147.1| Radical SAM family enzyme [Methylacidiphilum infernorum V4]
Length = 314
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 113/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY L++++R+++ +SP++IT+ST GI I K + LAVSLHA
Sbjct: 99 MGEPLLNYDQLIKSIRLISSSWGIGISPRKITISTSGIAPRIRKLALETLPFRLAVSLHA 158
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R +IMP +PL +L+ + +E+ +QKI +EYI++ G+ND + A +L ++
Sbjct: 159 TTDELRSKIMPINSKYPLSELIKSCEEFCSRRKQKITLEYILISGLNDRREDAERLARIA 218
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP+NPI ++ +++S F+ + + ++ ++RK+ G+DI GACGQ
Sbjct: 219 TSLRAKVNLIPYNPIERLAWKSPDQKEQLSFFRWL--KNKAVQVSIRKERGRDIDGACGQ 276
Query: 180 L 180
L
Sbjct: 277 L 277
>gi|402847470|ref|ZP_10895754.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas sp. oral taxon
279 str. F0450]
gi|402266328|gb|EJU15767.1| 23S rRNA m2A2503 methyltransferase [Porphyromonas sp. oral taxon
279 str. F0450]
Length = 349
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+N +++++ ++T GL + SPKRIT+STVG+ + +F S+ +LAVSL
Sbjct: 158 MGEPLDNATNVLKSISVLTSAWGLGW--SPKRITLSTVGVRRGLERFLSETT-CHLAVSL 214
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H P + R ++MPA PLE + ++E Q+++ EYI+ DGVND ++HA +L +
Sbjct: 215 HNPFHEGRLELMPAEGGLPLEDTLQMIREADFTGQRRVSFEYIVFDGVNDSDEHAAELAR 274
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPF+ I V R S DK+ F++ L S TT+R G+DIS AC
Sbjct: 275 LLRGIPCRINLIPFHQIPDVP-LRPLSRDKMEHFKRQLE-SRGYTTTIRTSRGEDISAAC 332
Query: 178 GQL 180
G L
Sbjct: 333 GML 335
>gi|351731457|ref|ZP_08949148.1| radical SAM protein [Acidovorax radicis N35]
Length = 374
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 117/197 (59%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 165 MGEPLQNYSALVPALRTMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+++L+ A Y ++ + I EY MLDGVND+ +HA QL +L
Sbjct: 224 PNDPLRDNLVPLNRKYPIDELLAACNRYLAHAPRDFITFEYCMLDGVNDQVEHARQLIEL 283
Query: 119 L-----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ E + NLIPFNP + R S +V +F K+L I TTVRK G DI
Sbjct: 284 VKPARGEGVRCKFNLIPFNPFPASGLLR-SPQSQVLAFAKVL-SEAGIVTTVRKTRGDDI 341
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 342 DAACGQLAGDVKDRTRA 358
>gi|307272756|ref|ZP_07554003.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
gi|306510370|gb|EFM79393.1| radical SAM enzyme, Cfr family [Enterococcus faecalis TX0855]
Length = 357
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
A GQL
Sbjct: 340 AFGQL 344
>gi|293610293|ref|ZP_06692594.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375137029|ref|YP_004997679.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|427423139|ref|ZP_18913305.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
gi|292827525|gb|EFF85889.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124474|gb|ADY83997.1| putative Fe-S-cluster redox enzyme [Acinetobacter calcoaceticus
PHEA-2]
gi|425700239|gb|EKU69830.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter baumannii WC-136]
Length = 411
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 123/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDI-DVALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y +++++ + IEY+ML+GVND+ +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|299771620|ref|YP_003733646.1| hypothetical protein AOLE_16930 [Acinetobacter oleivorans DR1]
gi|298701708|gb|ADI92273.1| UPF0063 protein yfgB [Acinetobacter oleivorans DR1]
Length = 411
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 123/193 (63%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ +++IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMQIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAKDID-VALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y +++++ + IEY+ML+GVND+ +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLAQLIAACQRYIAKDGNESTRKHVTIEYVMLEGVNDQPEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ KLL+ +NLIPFNP R SS +++ SFQK L + + T+R+ G DI
Sbjct: 319 MIKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIISFQKTLSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|402299716|ref|ZP_10819295.1| ribosomal RNA large subunit methyltransferase N [Bacillus
alcalophilus ATCC 27647]
gi|401725117|gb|EJS98426.1| ribosomal RNA large subunit methyltransferase N [Bacillus
alcalophilus ATCC 27647]
Length = 359
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 112/186 (60%), Gaps = 9/186 (4%)
Query: 1 MGEPLNNYAALV---EAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ +V E V+ GL + + ITVST GIV I +F +NLA+SL
Sbjct: 163 IGEPFDNFTNMVDFLEIVKDQKGLA--IGARHITVSTSGIVPKIYEFADLKLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R QIM RAFP+EKLM+++ Y + S ++I EYI+L GVND+++HA +L
Sbjct: 221 HAPNNELRTQIMKVNRAFPIEKLMDSVDYYLEKSNRRITFEYILLKGVNDQKEHALELAN 280
Query: 118 LLETFQ---VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L+ T + VNLIP+NP+ Q++ S ++ + F L+ I VR + G DI
Sbjct: 281 LIGTSRRKLTYVNLIPYNPVDEHGQYQRSDNEDIRIFFDTLKKK-GINCGVRLEHGTDID 339
Query: 175 GACGQL 180
ACGQL
Sbjct: 340 AACGQL 345
>gi|303246742|ref|ZP_07333019.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
gi|302491759|gb|EFL51639.1| radical SAM enzyme, Cfr family [Desulfovibrio fructosovorans JJ]
Length = 350
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 10/184 (5%)
Query: 1 MGEPLNNYAALV---EAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGL-NLAVS 56
MGEPL NY LV EA+ GL F S +RITVST G+ N GL +LAVS
Sbjct: 161 MGEPLLNYDNLVKTLEALHHPQGLDF--SGRRITVSTAGVRR--NLLELGRTGLCSLAVS 216
Query: 57 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
LHAP Q+ R +IMP A PL +LM L+EY ++++ EY++LDGVND + A +L
Sbjct: 217 LHAPTQEKRARIMPGAAKLPLSELMGILREYPLKPRERLTFEYLLLDGVNDADADARELV 276
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL T + VNLI +N + FR + +V++FQ+IL+ + I T+RK G DI+ A
Sbjct: 277 RLLSTVKAKVNLIVYNATPGLP-FRQPAAGRVAAFQEILK-AKGITATIRKSKGADIAAA 334
Query: 177 CGQL 180
CGQL
Sbjct: 335 CGQL 338
>gi|71908601|ref|YP_286188.1| hypothetical protein Daro_2988 [Dechloromonas aromatica RCB]
gi|123760407|sp|Q47BR3.1|RLMN_DECAR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71848222|gb|AAZ47718.1| 23S rRNA m(2)A-2503 methyltransferase [Dechloromonas aromatica RCB]
Length = 364
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ V A+++M + +S +RITVST G+V +++ + P + LAVSLHA
Sbjct: 163 MGEPLANFENSVAALKLMLDDNAYGLSRRRITVSTSGLVPVMDRLGDECP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P + +PL++LM A + Y +K + I EYIMLDG+ND + HA +L L
Sbjct: 222 PNDKLRDQLVPINQKYPLKELMAACQRYLEKAPRDFITFEYIMLDGINDTDAHARELLAL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+++ NLIPFNP S FR S ++V F IL + I TT RK G DI ACG
Sbjct: 282 VKSVHCKFNLIPFNPFPG-SPFRRSPAERVRHFADILMQA-GIVTTTRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|392428290|ref|YP_006469301.1| Fe-S cluster redox enzyme [Streptococcus intermedius JTH08]
gi|419777665|ref|ZP_14303575.1| 23S rRNA m2A2503 methyltransferase [Streptococcus intermedius SK54]
gi|383844689|gb|EID82101.1| 23S rRNA m2A2503 methyltransferase [Streptococcus intermedius SK54]
gi|391757436|dbj|BAM23053.1| Fe-S cluster redox enzyme [Streptococcus intermedius JTH08]
Length = 360
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNKVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|383934221|ref|ZP_09987663.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
gi|383704677|dbj|GAB57754.1| 23S rRNA (adenine2503-C2)-methyltransferase [Rheinheimera
nanhaiensis E407-8]
Length = 375
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M F +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 169 MGEPLLNLNNVVPAMELMLEDFGFGLSKRRVTLSTSGVVPALDLLREKI-DVALAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R +++P R +P+E+ + A + Y NS+ K+ +EY+ML+GVND + AH+L +
Sbjct: 228 PNNELRNELVPVNRKYPMEEFLAASRRYVANSKANDKVTVEYVMLEGVNDSMEQAHELAQ 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S ++ SS+ ++ F K+L+ Y VRK G DI AC
Sbjct: 288 ALKDTPSKINLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-EYGFTVIVRKTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 346 GQLVGDVIDR 355
>gi|357403874|ref|YP_004915798.1| Fe-S-cluster redox protein [Methylomicrobium alcaliphilum 20Z]
gi|351716539|emb|CCE22199.1| putative Fe-S-cluster redox enzyme [Methylomicrobium alcaliphilum
20Z]
Length = 370
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +M + +S +R+T+ST GIV A+ + +++ ++LAVSLHA
Sbjct: 169 MGEPLLNFDNVVAAMNLMMDDFAYGLSKRRVTISTSGIVPAMYRL-TEVCDVSLAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKE-YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R +++P + +PL++L+ A ++ ++ +++I EY+MLDG+ND Q A + KL
Sbjct: 228 VTDELRNELVPINKKYPLKELLAACRDNVIRSPRRRITFEYVMLDGINDSVQDAKAMVKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+T +NLIPFNP + S +R SS D + F+ +L + + TT+RK G DI ACG
Sbjct: 288 LKTVPSKINLIPFNPFPN-SSYRCSSSDAIDRFRAVLHNA-GMVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDK 187
QLV + DK
Sbjct: 346 QLVGKVQDK 354
>gi|429745119|ref|ZP_19278562.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161326|gb|EKY03743.1| 23S rRNA methyltransferase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 362
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+ +M + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPLANYENVVRALSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR QI+P + +PL++LM A + Y K + + EY+MLDG+ND+ +HA +L KL
Sbjct: 222 SNDAVRDQIVPLNKKYPLKELMGACRRYLVKAPRDFVTFEYVMLDGINDKVEHARELLKL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+E NLIPFNP + S + SS + + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VEDVPCKFNLIPFNPFPN-SGYDRSSAENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVKDK 348
>gi|424787257|ref|ZP_18214025.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius BA1]
gi|422114020|gb|EKU17738.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius BA1]
Length = 360
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNKVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|414157055|ref|ZP_11413355.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0442]
gi|410868371|gb|EKS16336.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0442]
Length = 362
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYNNVLKFIRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLK-KHGVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|387879094|ref|YP_006309397.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family
[Streptococcus parasanguinis FW213]
gi|386792549|gb|AFJ25584.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family
[Streptococcus parasanguinis FW213]
Length = 362
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYNNVLKFIRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLK-KHGVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|406659195|ref|ZP_11067333.1| cfr family radical SAM enzyme [Streptococcus iniae 9117]
gi|405577304|gb|EKB51452.1| cfr family radical SAM enzyme [Streptococcus iniae 9117]
Length = 360
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 10/199 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVMKFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVIFEYIMLNEVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S +V +F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKARVEAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNL--PDKISAKS 192
ACGQL N DK++AK+
Sbjct: 339 ACGQLRSNTMKKDKLAAKA 357
>gi|357237068|ref|ZP_09124411.1| putative ribosomal RNA large subunit methyltransferase N
[Streptococcus criceti HS-6]
gi|356885050|gb|EHI75250.1| putative ribosomal RNA large subunit methyltransferase N
[Streptococcus criceti HS-6]
Length = 371
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 175 IGEPFDNYDNVICFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGIQVNLAVSL 232
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL +A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 233 HAPNNELRSSIMRINRSFPLEKLFDAIEYYIETTNRRVTFEYIMLNEVNDSPENAQELAD 292
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L ++ + + +NLIP+NP+ Q+ S+ ++V +F +L+ + + VR++ G DI
Sbjct: 293 LTKSIRKLSYINLIPYNPVSEHDQYSRSTKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 351
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 352 ACGQLRSN 359
>gi|253988864|ref|YP_003040220.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|253780314|emb|CAQ83475.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 392
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R I+P R + +E+ + ++ Y S Q ++ +EY+MLD +ND + AHQL
Sbjct: 245 PTDDIRDDIVPINRKYNIEQFLAGVRRYLAKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L G Y T VRK G DI A
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLMG-YGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 363 CGQLAGDVIDR 373
>gi|253574078|ref|ZP_04851420.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846555|gb|EES74561.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 351
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 6/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY + + +R++ GL + P+ ITVST G+ I +F +NLAVSL
Sbjct: 163 IGEPFDNYDNMADFLRVIQDPKGLA--IGPRHITVSTSGLADKIIEFADSDLQVNLAVSL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM A+ Y + + +++ IEYI+L GVND +HA +L
Sbjct: 221 HAPNNELRTRIMKINKAIPIEKLMAAIDYYLERTNRRLTIEYILLKGVNDGTEHAQELAD 280
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL V VNLIP+NP+ SQ++ S V +F L+ + +VR + G DI AC
Sbjct: 281 LLGDRFVNVNLIPYNPVDEHSQYQRSEQKSVLAFYDALK-KRGLSVSVRLEHGADIDAAC 339
Query: 178 GQL 180
GQL
Sbjct: 340 GQL 342
>gi|402814305|ref|ZP_10863899.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
gi|402508152|gb|EJW18673.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
alvei DSM 29]
Length = 360
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 118/187 (63%), Gaps = 10/187 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ ++ +R++T GL + +RITVST G+ + I F +NLA+SL
Sbjct: 163 IGEPFDNFENIINFLRVVTDHKGLA--IGARRITVSTSGLANKIKDFADINLRVNLALSL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RA P+ K+M A++ + + Q++ +EYI+L VND+++HA +L K
Sbjct: 221 HAPNDELRTRIMKINRAIPIAKVMEAIQYFINTTNQRVTLEYILLRDVNDQQEHALELVK 280
Query: 118 LLETF----QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
L++ + +V VNLIP+NP+ SQ++ S + + F +++ + NI +VR + G DI
Sbjct: 281 LIQEWNMQDEVNVNLIPYNPVDEHSQYQRSEQESIRGFYDVMKKN-NISCSVRLEHGTDI 339
Query: 174 SGACGQL 180
ACGQL
Sbjct: 340 DAACGQL 346
>gi|255505596|ref|ZP_05347103.3| radical SAM enzyme, Cfr family [Bryantella formatexigens DSM 14469]
gi|255266841|gb|EET60046.1| 23S rRNA m2A2503 methyltransferase [Marvinbryantia formatexigens
DSM 14469]
Length = 354
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 116/193 (60%), Gaps = 7/193 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEPL+NY LV+ + +++ GL +S + ITVST GIV I + ++ + LA+SLH
Sbjct: 165 GEPLDNYENLVKFIHMLSDEHGL--NISQRNITVSTCGIVPNIYRLAAEKLQITLALSLH 222
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP Q+ R ++MP AR + L ++M A + Y + + +++ EY ++ GVND ++ A +L L
Sbjct: 223 APTQEKRMELMPIARKYELSEVMEACRAYFRETGRRLTFEYSLVGGVNDSQEDARELAVL 282
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP NPI S F S ++ F+ L Y I T+R++MG+DI GACG
Sbjct: 283 LDGLNCHVNLIPVNPIKERS-FVQSERRVIADFKTKLE-KYGINVTIRREMGRDIGGACG 340
Query: 179 QLVVNLPDKISAK 191
QL + D+ +
Sbjct: 341 QLRKSYLDRTEGE 353
>gi|386815051|ref|ZP_10102269.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
gi|386419627|gb|EIJ33462.1| 23S rRNA m(2)A-2503 methyltransferase [Thiothrix nivea DSM 5205]
Length = 409
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 123/192 (64%), Gaps = 9/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ + A+ +M + +S +R+T+ST G++ A+ + +D ++LAVSLHA
Sbjct: 209 MGEPLLNFDNVANALMLMMDDNAYGLSKRRVTLSTSGVLPALARL-ADTMDVSLAVSLHA 267
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +VR Q++P R +P+++LM +++ + + I EY+ML+G+ND+++HAHQL
Sbjct: 268 PNNEVRNQLVPLNRKYPIQELMAVCRQFLAKKTTERNHITWEYVMLEGINDKDEHAHQLV 327
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS-YNIRTTVRKQMGQDISG 175
KLL+ +NLIPFNP ++++ SS++++ F+ IL + Y + T RK G+DI
Sbjct: 328 KLLKGIPSKINLIPFNPFPE-TRYKRSSNNRIHRFRDILAAAGYTVIT--RKTRGEDIDA 384
Query: 176 ACGQLVVNLPDK 187
ACGQL + DK
Sbjct: 385 ACGQLAGQVNDK 396
>gi|357636480|ref|ZP_09134355.1| 23S rRNA m2A2503 methyltransferase [Streptococcus macacae NCTC
11558]
gi|357584934|gb|EHJ52137.1| 23S rRNA m2A2503 methyltransferase [Streptococcus macacae NCTC
11558]
Length = 361
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I +F + +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFLRTINDDNGLA--IGARHITVSTSGLAHKIREFAHEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+GVND ++A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDNPENAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V F IL+ + + VR++ G DI
Sbjct: 280 LTKKIRKLSYVNLIPYNPVTEHDQYSRSPKERVDVFYDILKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|152971378|ref|YP_001336487.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238895973|ref|YP_002920709.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|262040254|ref|ZP_06013505.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330007776|ref|ZP_08306073.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|365143329|ref|ZP_09348249.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|378980078|ref|YP_005228219.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386036000|ref|YP_005955913.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|402779528|ref|YP_006635074.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|419764239|ref|ZP_14290479.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|419975700|ref|ZP_14491107.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|419981597|ref|ZP_14496871.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|419986790|ref|ZP_14501918.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|419992529|ref|ZP_14507484.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|419998752|ref|ZP_14513536.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|420004590|ref|ZP_14519225.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|420010336|ref|ZP_14524810.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|420016468|ref|ZP_14530759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|420022049|ref|ZP_14536222.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|420027472|ref|ZP_14541464.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|420033393|ref|ZP_14547198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|420039761|ref|ZP_14553389.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|420044934|ref|ZP_14558409.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|420050811|ref|ZP_14564106.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|420056372|ref|ZP_14569529.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|420061024|ref|ZP_14574017.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|420067735|ref|ZP_14580524.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|420072996|ref|ZP_14585628.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|420080373|ref|ZP_14592797.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|420082543|ref|ZP_14594839.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|421911304|ref|ZP_16341067.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421917099|ref|ZP_16346663.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424831843|ref|ZP_18256571.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424932305|ref|ZP_18350677.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|425075470|ref|ZP_18478573.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082682|ref|ZP_18485779.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425086105|ref|ZP_18489198.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425092764|ref|ZP_18495849.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428149849|ref|ZP_18997658.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|428936471|ref|ZP_19009875.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|428942440|ref|ZP_19015434.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|449059461|ref|ZP_21737156.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
gi|205829779|sp|A6TCD6.1|RLMN_KLEP7 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150956227|gb|ABR78257.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238548291|dbj|BAH64642.1| putative pyruvate formate lyase activating enzyme 2 [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259042363|gb|EEW43383.1| cfr family radical SAM enzyme [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328535320|gb|EGF61805.1| 23S rRNA m2A2503 methyltransferase [Klebsiella sp. MS 92-3]
gi|339763128|gb|AEJ99348.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae KCTC 2242]
gi|363649671|gb|EHL88778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella sp.
4_1_44FAA]
gi|364519489|gb|AEW62617.1| hypothetical protein KPHS_39190 [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397342365|gb|EJJ35527.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH1]
gi|397342883|gb|EJJ36038.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH2]
gi|397346794|gb|EJJ39906.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH4]
gi|397359708|gb|EJJ52399.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH6]
gi|397360780|gb|EJJ53452.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH5]
gi|397365269|gb|EJJ57894.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH7]
gi|397374848|gb|EJJ67162.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH9]
gi|397378915|gb|EJJ71118.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH8]
gi|397385452|gb|EJJ77548.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH10]
gi|397393278|gb|EJJ85040.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH11]
gi|397395056|gb|EJJ86770.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH12]
gi|397402169|gb|EJJ93780.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH14]
gi|397410403|gb|EJK01685.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH17]
gi|397410876|gb|EJK02146.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH16]
gi|397420629|gb|EJK11689.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH18]
gi|397427544|gb|EJK18312.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH20]
gi|397431931|gb|EJK22599.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH19]
gi|397438490|gb|EJK28988.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH21]
gi|397441407|gb|EJK31782.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH22]
gi|397452140|gb|EJK42214.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KPNIH23]
gi|397742822|gb|EJK90040.1| 23S rRNA methyltransferase domain protein [Klebsiella pneumoniae
subsp. pneumoniae DSM 30104]
gi|402540467|gb|AFQ64616.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|405594344|gb|EKB67759.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405600934|gb|EKB74099.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405605638|gb|EKB78667.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611990|gb|EKB84756.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806492|gb|EKF77743.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae KpQ3]
gi|410114840|emb|CCM83692.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410120816|emb|CCM89288.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414709280|emb|CCN30984.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426298281|gb|EKV60699.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae JHCK1]
gi|426298658|gb|EKV61047.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae VA360]
gi|427540205|emb|CCM93796.1| Ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|448874746|gb|EMB09778.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae hvKP1]
Length = 388
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|182412656|ref|YP_001817722.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829647|sp|B1ZVM5.1|RLMN2_OPITP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
2; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 2; AltName:
Full=23S rRNA m2A2503 methyltransferase 2; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 2;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
2; AltName: Full=tRNA m2A37 methyltransferase 2
gi|177839870|gb|ACB74122.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 428
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 10/187 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY A++ AV I+ GL + +RIT+STVG+V I + ++ ++LAVSL
Sbjct: 243 MGEPLHNYEAVMRAVDILRDDGGL--ALGAERITLSTVGVVPGILRLAAEKRPVHLAVSL 300
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA Q+ R ++P A+ +PL++LM A + Y + + +++F E+ +++G ND HA +G+
Sbjct: 301 HAADQEERAALVPVAKKWPLDELMAACRTYSETTGRRVFYEWTLIEGRNDTAAHARAVGR 360
Query: 118 LLETFQVVVNLIPFNPIGSV--SQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL VNLIP NP + RT + + FQ+IL + + +TVR++ G DI+
Sbjct: 361 LLRGLPAQVNLIPLNPTAGYDGTPGRTEAARR---FQEILSREFALPSTVRQRRGIDIAA 417
Query: 176 ACGQLVV 182
CGQL V
Sbjct: 418 GCGQLAV 424
>gi|392407646|ref|YP_006444254.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
gi|390620782|gb|AFM21929.1| 23S rRNA m(2)A-2503 methyltransferase [Anaerobaculum mobile DSM
13181]
Length = 344
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 11/185 (5%)
Query: 1 MGEPLNNYAALVEAVRI-----MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAV 55
MGEP N A+ +++RI M GL + T+ST GIV I + L+V
Sbjct: 160 MGEPFLNQEAVFKSIRILNEPKMRGLGI----RHFTISTAGIVPGILVLAEMKIPVRLSV 215
Query: 56 SLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
SLHAP +R ++MP + +PL LM AL++YQ ++ +I IEY+M++GVND +HA++L
Sbjct: 216 SLHAPNDQLRSKLMPINKQYPLSTLMEALRKYQSATKDRITIEYLMMNGVNDSTEHAYEL 275
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL V VNLIP+N + F+ S+D ++ +F IL NI +R++ G DI+
Sbjct: 276 ATLLSGLSVYVNLIPYNTVPG-GNFKRSTDGRIKAFADIL-SKLNIECEIRRERGSDINA 333
Query: 176 ACGQL 180
ACGQL
Sbjct: 334 ACGQL 338
>gi|206580011|ref|YP_002237132.1| ribosomal RNA large subunit methyltransferase N [Klebsiella
pneumoniae 342]
gi|288934092|ref|YP_003438151.1| Cfr family radical SAM protein [Klebsiella variicola At-22]
gi|290508289|ref|ZP_06547660.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
gi|254807185|sp|B5XNL2.1|RLMN_KLEP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|206569069|gb|ACI10845.1| radical SAM enzyme, Cfr family [Klebsiella pneumoniae 342]
gi|288888821|gb|ADC57139.1| radical SAM enzyme, Cfr family [Klebsiella variicola At-22]
gi|289777683|gb|EFD85680.1| cfr family radical SAM enzyme [Klebsiella sp. 1_1_55]
Length = 388
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|317490866|ref|ZP_07949302.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920413|gb|EFV41736.1| cfr family radical SAM enzyme [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 419
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A+ K D+ + LA+SLHA
Sbjct: 213 MGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKL-GDMIDVALAISLHA 271
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 272 PTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHAHQLA 331
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y VRK G DI A
Sbjct: 332 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTVIVRKTRGDDIDAA 389
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 390 CGQLAGDVIDR 400
>gi|336246651|ref|YP_004590361.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|444355373|ref|YP_007391517.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
gi|334732707|gb|AEG95082.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
aerogenes KCTC 2190]
gi|443906203|emb|CCG33977.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Enterobacter aerogenes EA1509E]
Length = 388
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E +N+++ Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLNSVRGYISKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|260584540|ref|ZP_05852286.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
gi|260157563|gb|EEW92633.1| radical SAM enzyme, Cfr family [Granulicatella elegans ATCC 700633]
Length = 375
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ ++++ TGL + + ITVST G+ I F + +NLA+SL
Sbjct: 175 IGEPFDNYDNVIKFLKVVNSDTGLA--IGARHITVSTSGLAPKILDFAKEGLQVNLALSL 232
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D R +IM R +P+E +M A+ EY + + +++ EYIMLD VND + A QL
Sbjct: 233 HAPDNDTRSKIMRINRKYPIEVVMEAINEYIRTTNRRVTFEYIMLDHVNDSVEQAQQLAD 292
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+N + Q+ SS D+V +F +L+ ++ I VRK+ G DI
Sbjct: 293 LLADKKRLSYVNLIPYNKVREHDQYERSSKDRVVAFYDVLKKNH-INCVVRKEFGHDIEA 351
Query: 176 ACGQL 180
ACGQL
Sbjct: 352 ACGQL 356
>gi|386388745|ref|ZP_10073598.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385697259|gb|EIG27694.1| 23S rRNA m2A2503 methyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 386
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM + +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 180 MGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDALR-DKIDVALAISLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E L+N++ +Y + S K+ IEY+MLD VNDE HAHQL
Sbjct: 239 PNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHVNDEVDHAHQLA 298
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIP+NP + + SS+ +V FQK L Y T+RK G DI A
Sbjct: 299 KVLKNTPCKINLIPWNPFPE-APYAKSSNSRVDRFQKALM-EYGFTVTIRKTRGDDIDAA 356
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 357 CGQLAGDVIDR 367
>gi|374709018|ref|ZP_09713452.1| ribosomal RNA large subunit methyltransferase N [Sporolactobacillus
inulinus CASD]
Length = 359
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 115/184 (62%), Gaps = 6/184 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLH 58
+GEP +N+ +V ++I+ G + + ITVST G+V I F +DL +NLA+SLH
Sbjct: 163 IGEPFDNFDHVVNFLKIINDGSGLAIGARHITVSTSGLVPKIYDF-ADLDWQINLAISLH 221
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R +IM RA+P+E+LM A+ Y K + +++ EYIML G+ND ++ A +L L
Sbjct: 222 APNNELRSRIMKINRAYPVEQLMEAVDYYLKKTNRRVTFEYIMLKGINDHKEEAIELANL 281
Query: 119 LETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ + + VNLIP+NP+ S+++ S + V +F + LR I VRK+ G DI A
Sbjct: 282 LKDKRHLSYVNLIPYNPVEEHSEYQRSDKEAVVTFYETLR-QRGINVVVRKEFGTDIDAA 340
Query: 177 CGQL 180
CGQL
Sbjct: 341 CGQL 344
>gi|365836071|ref|ZP_09377478.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
gi|364564882|gb|EHM42625.1| 23S rRNA m2A2503 methyltransferase [Hafnia alvei ATCC 51873]
Length = 419
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A+ K D+ + LA+SLHA
Sbjct: 213 MGEPLLNLNNVVPAMNIMLDDFGFGLSKRRVTLSTSGVVPALEKL-GDMIDVALAISLHA 271
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 272 PTDEIRDEIVPINRKYNIETFLGAVRRYLEKSNANQGRVTVEYVMLDHINDGMEHAHQLA 331
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y VRK G DI A
Sbjct: 332 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTVIVRKTRGDDIDAA 389
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 390 CGQLAGDVIDR 400
>gi|313890464|ref|ZP_07824093.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
SPIN 20026]
gi|416852998|ref|ZP_11910143.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus LQ
940-04]
gi|313121166|gb|EFR44276.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus
SPIN 20026]
gi|356740487|gb|EHI65719.1| 23S rRNA m2A2503 methyltransferase [Streptococcus pseudoporcinus LQ
940-04]
Length = 361
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 116/201 (57%), Gaps = 8/201 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVMTFLRTINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFTAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V +F IL+ + + VR++ G DI
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDILKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPV 196
ACGQL N K K+ V
Sbjct: 339 ACGQLRSNTMKKDRQKAAAKV 359
>gi|90410870|ref|ZP_01218884.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
gi|90328083|gb|EAS44394.1| hypothetical protein P3TCK_14595 [Photobacterium profundum 3TCK]
Length = 373
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM + F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP F + + +++ Y Q N+ + ++ +EY++LD VND+ +HA QL
Sbjct: 226 PTDELRSQIMPINDRFNIATFLESVRRYVEQSNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIPFNP S +R S+ ++ F K L Y+ TVRK G DI A
Sbjct: 286 VLLKDTPAKINLIPFNPYPG-SPYRKPSNSRIDRFMKTLM-EYDFTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|297538107|ref|YP_003673876.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
gi|297257454|gb|ADI29299.1| radical SAM enzyme, Cfr family [Methylotenera versatilis 301]
Length = 374
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A++IM + +S +R+T+ST G+V A+++ D P + LAVSLHA
Sbjct: 175 MGEPLANYDNVVTAMQIMLDDNAYGLSRRRVTLSTSGMVPAMDRLKEDCP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R I+P + +PL++LM A Y +K + + EY+MLDGVND +HAHQL L
Sbjct: 234 PNDALRDVIVPINKKYPLKELMAACNRYLEKAPRDFVTFEYVMLDGVNDTVEHAHQLLDL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + TS + F+ IL + + TVRK G+DI ACG
Sbjct: 294 VRNVSCKFNLIPFNPFPN-SGYDTSKASHIRVFRDILMQAGYV-VTVRKTRGEDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 352 QLAGKVLDK 360
>gi|315221970|ref|ZP_07863881.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
gi|421491238|ref|ZP_15938604.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus SK1138]
gi|315188936|gb|EFU22640.1| radical SAM enzyme, Cfr family [Streptococcus anginosus F0211]
gi|400371340|gb|EJP24299.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus SK1138]
Length = 367
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 8/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 169 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 227 HAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 345
Query: 176 ACGQLVVNLPDKISAKS 192
ACGQL N K K+
Sbjct: 346 ACGQLRSNTMKKDKEKA 362
>gi|306827020|ref|ZP_07460318.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
gi|304430766|gb|EFM33777.1| cfr family radical SAM enzyme [Streptococcus pyogenes ATCC 10782]
Length = 359
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST G+ H I F ++ NLAVSL
Sbjct: 162 IGEPFDNYKNVMCFLRVINDDNGLA--IGARHITVSTSGLAHKIRDFANEGVQANLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRVNRSFPLEKLFSAIEYYIEKTNRRVTFEYIMLNEVNDSIKQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L +T + + VNLIP+NP+ Q+ S ++V +F +L+ + + VR++ G DI
Sbjct: 280 LTKTIRKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|374620265|ref|ZP_09692799.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
gi|374303492|gb|EHQ57676.1| 23S rRNA m(2)A-2503 methyltransferase [gamma proteobacterium
HIMB55]
Length = 378
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 128/206 (62%), Gaps = 9/206 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V ++ +M L + +S +++T+ST G+V A+++ ++L ++LAVSLHA
Sbjct: 176 MGEPLLNFDNVVSSMDLMCDDLAYGLSKRKVTLSTSGVVPALDRL-AELSDVSLAVSLHA 234
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R +P+ KL+++ + Y Q + ++ + IEY +L GVND+ +HAH+L
Sbjct: 235 PNDAIRNKIVPINRRYPIAKLLDSARAYIDAQTDRKRVVTIEYTLLAGVNDQVEHAHELA 294
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ + +NLIPFN + S F S + VS F K+L + I TVR G DI A
Sbjct: 295 ALLKDYPCKINLIPFNDFPN-SGFERPSGNAVSRFWKVLMEAGFI-VTVRTTRGDDIDAA 352
Query: 177 CGQLVVNLPD--KISAKSTPPVTDIE 200
CGQLV ++ D K SA+ +IE
Sbjct: 353 CGQLVGDVNDRTKRSARYRAQYEEIE 378
>gi|441504685|ref|ZP_20986678.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
gi|441427784|gb|ELR65253.1| Ribosomal RNA large subunit methyltransferase N [Photobacterium sp.
AK15]
Length = 374
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTDNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + ++ +EY++LD VND+ +HA QL
Sbjct: 226 PTDELRSQIMPINDRWNIDDFLGSVRRYIASSNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K L+ +NLIPFNP S ++ S+ +V F K L Y+ TVRK G DI A
Sbjct: 286 KTLKDTPAKINLIPFNPYPG-SPYKKPSNSRVDRFMKTLM-EYDFTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|160871646|ref|ZP_02061778.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
gi|159120445|gb|EDP45783.1| radical SAM enzyme, Cfr family [Rickettsiella grylli]
Length = 372
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 121/189 (64%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++V+A+ +M + S +R+T+ST G+V A+ + S ++LA+SLHA
Sbjct: 167 MGEPLLNFDSVVKAMNLMMDDFGYGFSKRRVTLSTSGVVPALRRL-SKASEVSLAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +L+ + Y + ++++ +EY+ML+G+ND+ +HA QL K+
Sbjct: 226 PNDELRDRLVPINKKYPLSELLEVCRNYFRSEHRRRVTMEYVMLEGINDQPEHARQLIKI 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE V +NLIPFNP +++R SS + F+ IL + + T RK G+DI ACG
Sbjct: 286 LEGIPVKINLIPFNPF-PFARYRRSSQITIERFKSILVKA-GLNTITRKTRGEDIDAACG 343
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 344 QLVGYVHDR 352
>gi|291327220|ref|ZP_06127407.2| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
gi|291311232|gb|EFE51685.1| radical SAM enzyme, Cfr family [Providencia rettgeri DSM 1131]
Length = 426
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 220 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDVALAISLHA 278
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R I+P + + +E +N++ Y S ++ +EY+MLD VND + AHQL
Sbjct: 279 PTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQLA 338
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L G Y T VRK G DI A
Sbjct: 339 ECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFCKVLMG-YGFTTIVRKTRGDDIDAA 396
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 397 CGQLAGDVIDR 407
>gi|332639899|pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
gi|332639900|pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
GQL ++ D+
Sbjct: 355 XGQLAGDVIDR 365
>gi|422009346|ref|ZP_16356329.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
gi|414093164|gb|EKT54836.1| ribosomal RNA large subunit methyltransferase N [Providencia
rettgeri Dmel1]
Length = 393
Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDVALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R I+P + + +E +N++ Y S ++ +EY+MLD VND + AHQL
Sbjct: 246 PTDDIRDDIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHVNDSVEQAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L G Y T VRK G DI A
Sbjct: 306 ECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFCKVLMG-YGFTTIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 364 CGQLAGDVIDR 374
>gi|329297584|ref|ZP_08254920.1| ribosomal RNA large subunit methyltransferase N [Plautia stali
symbiont]
Length = 376
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 170 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R I+P + + +E + A+K Y S Q ++ IEY+MLD VND +HAH+L
Sbjct: 229 PNDTIRDDIVPINKKYNIEAFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTEHAHELA 288
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 289 ALLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 346
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 347 CGQLAGDVIDR 357
>gi|282890654|ref|ZP_06299177.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175218|ref|YP_004652028.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
gi|281499651|gb|EFB41947.1| hypothetical protein pah_c022o278 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479576|emb|CCB86174.1| ribosomal RNA large subunit methyltransferase N 2 [Parachlamydia
acanthamoebae UV-7]
Length = 350
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 114/189 (60%), Gaps = 4/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +++++R+++ +S +RITVSTVGIV I + + ++L +SLHA
Sbjct: 160 MGEPLKNYDPVIKSIRLLSNPELLNLSQRRITVSTVGIVEGIKRLSREELKVSLVLSLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q +R +I+P AR +PL+ +M A+ EY K +++ I EY ++ G+ND HA +L LL
Sbjct: 220 PNQHIRQKIIPYARKYPLDAIMEAMDEYAKLTKRDITFEYTLIAGINDHPDHAFELTHLL 279
Query: 120 E-TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
Q VNLIP+NP+ + + + + F+ +L G+ + T R G DI+ ACG
Sbjct: 280 HGKSQFTVNLIPYNPVPGL-RLKRPEKKAIKQFRAVLFGA-KVVNTCRYTKGDDIAAACG 337
Query: 179 QLVVNLPDK 187
QL + +K
Sbjct: 338 QLALQELEK 346
>gi|300113467|ref|YP_003760042.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
gi|299539404|gb|ADJ27721.1| radical SAM enzyme, Cfr family [Nitrosococcus watsonii C-113]
Length = 372
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 117/191 (61%), Gaps = 9/191 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +M + +S +R+T+ST G+V AI++ + P ++LAVSLHA
Sbjct: 166 MGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAIDRLRAVCP-VSLAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PLE L++A + Y +++ + EY+ML VND HA L +L
Sbjct: 225 PTDKLRDELVPLNKKYPLEDLLSACRRYVAGDRRRAVTFEYVMLADVNDSFSHARALLRL 284
Query: 119 LETFQVVVNLIPFNPI-GSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGA 176
L+ VNLIPFNP GSV +R S + + F +K+LRG I T RK G DI+ A
Sbjct: 285 LQGLPAKVNLIPFNPFPGSV--YRRSDAETIDRFREKLLRGG--IMTVTRKTRGDDIAAA 340
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 341 CGQLAGQVQDR 351
>gi|290476003|ref|YP_003468899.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus bovienii
SS-2004]
gi|289175332|emb|CBJ82135.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
bovienii SS-2004]
Length = 392
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMVDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P DVR +I+P R + +E+ + ++ Y S Q ++ +EY+MLD VND + AHQL
Sbjct: 245 PTDDVRDEIVPINRKYNIEEFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 363 CGQLAGDVIDR 373
>gi|323352763|ref|ZP_08087733.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
gi|322121799|gb|EFX93545.1| cfr family radical SAM enzyme [Streptococcus sanguinis VMC66]
Length = 362
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKT-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|121604771|ref|YP_982100.1| radical SAM protein [Polaromonas naphthalenivorans CJ2]
gi|205829800|sp|A1VNF1.1|RLMN_POLNA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120593740|gb|ABM37179.1| 23S rRNA m(2)A-2503 methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 382
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 116/196 (59%), Gaps = 10/196 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ L+ A+++M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYSQLLPALKVMLNDHGYGLSRRRVTVSTSGVVPMIDRLAKDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +P+ +L+ A YQ + + I EY MLDGVND+ +HA QL L
Sbjct: 223 PQDALRSNLVPLNKKYPIAELLEACTRYQSAAPRDFITFEYCMLDGVNDQPEHARQLVAL 282
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
++T NLIPFNP + R S +V +F KIL + I TTVRK G DI
Sbjct: 283 MKTHAANGLSCKFNLIPFNPFPASGLLR-SDMPQVMAFAKILMDA-GIITTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKIS 189
ACGQL ++ D+ S
Sbjct: 341 DAACGQLAGDVQDRTS 356
>gi|388456385|ref|ZP_10138680.1| Fe-S containing enzyme [Fluoribacter dumoffii Tex-KL]
Length = 375
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 116/191 (60%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMSIMMDDFAYGLSKRRVTLSTSGVLPELQRLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +LM K Y KN ++K+ EY+ML GVND+ +HA+QL KL
Sbjct: 226 PNDELRNELVPINKKYPLSQLMALCKTYFKNEPRRKVTFEYVMLKGVNDQPEHANQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++ + SS + + +F+ L ++ I T RK G DI ACG
Sbjct: 286 LRNIPAKVNLIPFNPF-PMTHYERSSQEAIDAFRDKLI-AHGINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + D+ S
Sbjct: 344 QLAGEVMDRTS 354
>gi|153948736|ref|YP_001400164.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 31758]
gi|170023536|ref|YP_001720041.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis YPIII]
gi|205829929|sp|A7FFY6.1|RLMN_YERP3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829933|sp|B1JS02.1|RLMN_YERPY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|152960231|gb|ABS47692.1| radical SAM domain protein, Cfr family [Yersinia pseudotuberculosis
IP 31758]
gi|169750070|gb|ACA67588.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis YPIII]
Length = 398
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|354581801|ref|ZP_09000704.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
gi|353200418|gb|EHB65878.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
Length = 353
Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 115/185 (62%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY + +R++ GL + P+ ITVST G+ + I +F NLA+SL
Sbjct: 163 IGEPFDNYDNMANFIRVIKDHKGLA--IGPRHITVSTSGLANKIIEFADSDLNTNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM A+ Y + ++++I +EYI+L VND+ +HA +L +
Sbjct: 221 HAPNNELRTRIMKINKAIPIEKLMEAIDYYLEKTKRRITLEYILLKDVNDQREHALELAE 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ SS + +++F L+ I +VR + G DI
Sbjct: 281 LVGDRRSLANVNLIPYNPVDEHSQYQRSSKETITAFYDTLKKQ-GISVSVRLEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|377576744|ref|ZP_09805728.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
gi|377542776|dbj|GAB50893.1| ribosomal RNA large subunit methyltransferase N [Escherichia
hermannii NBRC 105704]
Length = 388
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + +E + A++ Y + S Q ++ +EY++LD +ND +HAHQL
Sbjct: 241 PTDEIRDRIMPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVLLDHINDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ECLKDTPCKLNLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 359 CGQLAGEVIDR 369
>gi|418637153|ref|ZP_13199480.1| 23S rRNA m2A2503 methyltransferase, partial [Staphylococcus
lugdunensis VCU139]
gi|374839520|gb|EHS03032.1| 23S rRNA m2A2503 methyltransferase, partial [Staphylococcus
lugdunensis VCU139]
Length = 285
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + + ITVST GIV I F + +N AVSLHA
Sbjct: 97 IGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVSLHA 156
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
DVR ++MP RA+ ++KLM A++ YQ+ + ++I EY + GVND+ +HA +L L+
Sbjct: 157 AKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNRRITFEYGLFGGVNDQLEHARELAHLI 216
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +TS DD + F+K L+ + T+R++ G DI ACGQ
Sbjct: 217 KNLNCHVNLIPVNHVPERNYVKTSKDD-IFKFEKELK-RLGVNATIRREQGSDIDAACGQ 274
Query: 180 L 180
L
Sbjct: 275 L 275
>gi|22125249|ref|NP_668672.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
KIM10+]
gi|45442520|ref|NP_994059.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
biovar Microtus str. 91001]
gi|51597160|ref|YP_071351.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis IP 32953]
gi|108808316|ref|YP_652232.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Antiqua]
gi|108811419|ref|YP_647186.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Nepal516]
gi|145599499|ref|YP_001163575.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Pestoides F]
gi|149365342|ref|ZP_01887377.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162419386|ref|YP_001605027.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
Angola]
gi|165926002|ref|ZP_02221834.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937119|ref|ZP_02225684.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008394|ref|ZP_02229292.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212301|ref|ZP_02238336.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399541|ref|ZP_02305065.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421243|ref|ZP_02312996.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423347|ref|ZP_02315100.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|218929942|ref|YP_002347817.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
CO92]
gi|229838462|ref|ZP_04458621.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895163|ref|ZP_04510339.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229899029|ref|ZP_04514173.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229901676|ref|ZP_04516798.1| predicted enzyme [Yersinia pestis Nepal516]
gi|270489871|ref|ZP_06206945.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294504556|ref|YP_003568618.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|384122853|ref|YP_005505473.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|384126880|ref|YP_005509494.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|384139297|ref|YP_005521999.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|384415515|ref|YP_005624877.1| hypothetical protein YPC_3072 [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420547914|ref|ZP_15045762.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|420553237|ref|ZP_15050524.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|420558806|ref|ZP_15055391.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|420564253|ref|ZP_15060246.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|420569287|ref|ZP_15064821.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|420574936|ref|ZP_15069927.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|420580291|ref|ZP_15074796.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|420585612|ref|ZP_15079619.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|420590733|ref|ZP_15084225.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|420596105|ref|ZP_15089057.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|420601770|ref|ZP_15094102.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|420607217|ref|ZP_15099016.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|420612600|ref|ZP_15103850.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|420617967|ref|ZP_15108548.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|420623265|ref|ZP_15113298.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|420628346|ref|ZP_15117912.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|420633483|ref|ZP_15122520.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|420638685|ref|ZP_15127200.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|420644177|ref|ZP_15132199.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|420649442|ref|ZP_15136966.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|420655077|ref|ZP_15142034.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|420660569|ref|ZP_15146959.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|420665879|ref|ZP_15151725.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|420670752|ref|ZP_15156157.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|420676101|ref|ZP_15161024.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|420681706|ref|ZP_15166097.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|420687023|ref|ZP_15170828.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|420692221|ref|ZP_15175395.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|420698002|ref|ZP_15180481.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|420703757|ref|ZP_15185109.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|420709236|ref|ZP_15189894.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|420714667|ref|ZP_15194738.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|420720168|ref|ZP_15199473.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|420725655|ref|ZP_15204280.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|420731264|ref|ZP_15209311.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|420736304|ref|ZP_15213867.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|420741747|ref|ZP_15218758.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|420747419|ref|ZP_15223580.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|420752907|ref|ZP_15228446.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|420758597|ref|ZP_15233083.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|420763949|ref|ZP_15237719.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|420769173|ref|ZP_15242409.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|420774163|ref|ZP_15246920.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|420779767|ref|ZP_15251864.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|420785349|ref|ZP_15256750.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|420790521|ref|ZP_15261384.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|420796038|ref|ZP_15266344.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|420801097|ref|ZP_15270886.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|420806465|ref|ZP_15275744.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|420811813|ref|ZP_15280556.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|420817334|ref|ZP_15285534.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|420822646|ref|ZP_15290305.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|420827729|ref|ZP_15294870.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|420833420|ref|ZP_15300014.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|420838284|ref|ZP_15304412.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|420843472|ref|ZP_15309113.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|420849131|ref|ZP_15314201.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|420854747|ref|ZP_15318988.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|420859989|ref|ZP_15323577.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|421764386|ref|ZP_16201178.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
gi|81638860|sp|Q667Z6.1|RLMN_YERPS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123372276|sp|Q1C5I5.1|RLMN_YERPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123373337|sp|Q1CK94.1|RLMN_YERPN RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|123776892|sp|Q7CJM9.1|RLMN_YERPE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829931|sp|A9R805.1|RLMN_YERPG RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829932|sp|A4TMU0.1|RLMN_YERPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21958119|gb|AAM84923.1|AE013737_5 hypothetical protein y1350 [Yersinia pestis KIM10+]
gi|45437385|gb|AAS62936.1| Predicted Fe-S-cluster redox enzyme [Yersinia pestis biovar
Microtus str. 91001]
gi|51590442|emb|CAH22082.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108775067|gb|ABG17586.1| hypothetical protein YPN_1256 [Yersinia pestis Nepal516]
gi|108780229|gb|ABG14287.1| hypothetical protein YPA_2322 [Yersinia pestis Antiqua]
gi|115348553|emb|CAL21493.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211195|gb|ABP40602.1| hypothetical protein YPDSF_2227 [Yersinia pestis Pestoides F]
gi|149291755|gb|EDM41829.1| hypothetical protein YPE_0496 [Yersinia pestis CA88-4125]
gi|162352201|gb|ABX86149.1| radical SAM domain protein, Cfr family [Yersinia pestis Angola]
gi|165914982|gb|EDR33594.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922206|gb|EDR39383.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992776|gb|EDR45077.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206232|gb|EDR50712.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960732|gb|EDR56753.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052045|gb|EDR63453.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057517|gb|EDR67263.1| radical SAM domain protein, Cfr family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681605|gb|EEO77699.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229687974|gb|EEO80046.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229694828|gb|EEO84875.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701925|gb|EEO89948.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|262362449|gb|ACY59170.1| hypothetical protein YPD4_2263 [Yersinia pestis D106004]
gi|262366544|gb|ACY63101.1| hypothetical protein YPD8_2426 [Yersinia pestis D182038]
gi|270338375|gb|EFA49152.1| radical SAM enzyme, Cfr family [Yersinia pestis KIM D27]
gi|294355015|gb|ADE65356.1| hypothetical protein YPZ3_2446 [Yersinia pestis Z176003]
gi|320016019|gb|ADV99590.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342854426|gb|AEL72979.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
A1122]
gi|391424135|gb|EIQ86552.1| 23S rRNA methyltransferase [Yersinia pestis PY-01]
gi|391425019|gb|EIQ87338.1| 23S rRNA methyltransferase [Yersinia pestis PY-02]
gi|391425512|gb|EIQ87769.1| 23S rRNA methyltransferase [Yersinia pestis PY-03]
gi|391439181|gb|EIQ99861.1| 23S rRNA methyltransferase [Yersinia pestis PY-04]
gi|391440427|gb|EIR01001.1| 23S rRNA methyltransferase [Yersinia pestis PY-05]
gi|391443996|gb|EIR04261.1| 23S rRNA methyltransferase [Yersinia pestis PY-06]
gi|391455997|gb|EIR15063.1| 23S rRNA methyltransferase [Yersinia pestis PY-07]
gi|391456947|gb|EIR15927.1| 23S rRNA methyltransferase [Yersinia pestis PY-08]
gi|391459108|gb|EIR17914.1| 23S rRNA methyltransferase [Yersinia pestis PY-09]
gi|391472073|gb|EIR29570.1| 23S rRNA methyltransferase [Yersinia pestis PY-10]
gi|391473762|gb|EIR31109.1| 23S rRNA methyltransferase [Yersinia pestis PY-11]
gi|391474233|gb|EIR31538.1| 23S rRNA methyltransferase [Yersinia pestis PY-12]
gi|391488248|gb|EIR44114.1| 23S rRNA methyltransferase [Yersinia pestis PY-13]
gi|391489579|gb|EIR45312.1| 23S rRNA methyltransferase [Yersinia pestis PY-15]
gi|391490920|gb|EIR46527.1| 23S rRNA methyltransferase [Yersinia pestis PY-14]
gi|391504024|gb|EIR58157.1| 23S rRNA methyltransferase [Yersinia pestis PY-16]
gi|391504342|gb|EIR58442.1| 23S rRNA methyltransferase [Yersinia pestis PY-19]
gi|391509292|gb|EIR62932.1| 23S rRNA methyltransferase [Yersinia pestis PY-25]
gi|391519882|gb|EIR72482.1| 23S rRNA methyltransferase [Yersinia pestis PY-29]
gi|391521885|gb|EIR74316.1| 23S rRNA methyltransferase [Yersinia pestis PY-34]
gi|391522799|gb|EIR75160.1| 23S rRNA methyltransferase [Yersinia pestis PY-32]
gi|391534858|gb|EIR85994.1| 23S rRNA methyltransferase [Yersinia pestis PY-36]
gi|391537633|gb|EIR88510.1| 23S rRNA methyltransferase [Yersinia pestis PY-42]
gi|391539882|gb|EIR90569.1| 23S rRNA methyltransferase [Yersinia pestis PY-45]
gi|391552888|gb|EIS02273.1| 23S rRNA methyltransferase [Yersinia pestis PY-46]
gi|391553340|gb|EIS02672.1| 23S rRNA methyltransferase [Yersinia pestis PY-47]
gi|391554150|gb|EIS03421.1| 23S rRNA methyltransferase [Yersinia pestis PY-48]
gi|391568010|gb|EIS15796.1| 23S rRNA methyltransferase [Yersinia pestis PY-52]
gi|391569159|gb|EIS16786.1| 23S rRNA methyltransferase [Yersinia pestis PY-53]
gi|391574500|gb|EIS21377.1| 23S rRNA methyltransferase [Yersinia pestis PY-54]
gi|391582045|gb|EIS27857.1| 23S rRNA methyltransferase [Yersinia pestis PY-55]
gi|391584662|gb|EIS30162.1| 23S rRNA methyltransferase [Yersinia pestis PY-56]
gi|391595172|gb|EIS39246.1| 23S rRNA methyltransferase [Yersinia pestis PY-58]
gi|391597920|gb|EIS41696.1| 23S rRNA methyltransferase [Yersinia pestis PY-60]
gi|391599297|gb|EIS42930.1| 23S rRNA methyltransferase [Yersinia pestis PY-59]
gi|391612272|gb|EIS54362.1| 23S rRNA methyltransferase [Yersinia pestis PY-61]
gi|391612918|gb|EIS54939.1| 23S rRNA methyltransferase [Yersinia pestis PY-63]
gi|391616598|gb|EIS58240.1| 23S rRNA methyltransferase [Yersinia pestis PY-64]
gi|391625264|gb|EIS65791.1| 23S rRNA methyltransferase [Yersinia pestis PY-65]
gi|391631126|gb|EIS70793.1| 23S rRNA methyltransferase [Yersinia pestis PY-66]
gi|391636046|gb|EIS75126.1| 23S rRNA methyltransferase [Yersinia pestis PY-71]
gi|391638261|gb|EIS77086.1| 23S rRNA methyltransferase [Yersinia pestis PY-72]
gi|391648033|gb|EIS85598.1| 23S rRNA methyltransferase [Yersinia pestis PY-76]
gi|391651846|gb|EIS88973.1| 23S rRNA methyltransferase [Yersinia pestis PY-88]
gi|391656655|gb|EIS93258.1| 23S rRNA methyltransferase [Yersinia pestis PY-89]
gi|391661089|gb|EIS97170.1| 23S rRNA methyltransferase [Yersinia pestis PY-90]
gi|391668940|gb|EIT04128.1| 23S rRNA methyltransferase [Yersinia pestis PY-91]
gi|391678150|gb|EIT12394.1| 23S rRNA methyltransferase [Yersinia pestis PY-93]
gi|391679120|gb|EIT13281.1| 23S rRNA methyltransferase [Yersinia pestis PY-92]
gi|391679830|gb|EIT13928.1| 23S rRNA methyltransferase [Yersinia pestis PY-94]
gi|391692086|gb|EIT24956.1| 23S rRNA methyltransferase [Yersinia pestis PY-95]
gi|391694975|gb|EIT27589.1| 23S rRNA methyltransferase [Yersinia pestis PY-96]
gi|391696750|gb|EIT29203.1| 23S rRNA methyltransferase [Yersinia pestis PY-98]
gi|391708412|gb|EIT39673.1| 23S rRNA methyltransferase [Yersinia pestis PY-99]
gi|391712580|gb|EIT43445.1| 23S rRNA methyltransferase [Yersinia pestis PY-100]
gi|391713119|gb|EIT43927.1| 23S rRNA methyltransferase [Yersinia pestis PY-101]
gi|391724780|gb|EIT54318.1| 23S rRNA methyltransferase [Yersinia pestis PY-102]
gi|391726169|gb|EIT55553.1| 23S rRNA methyltransferase [Yersinia pestis PY-103]
gi|391728624|gb|EIT57712.1| 23S rRNA methyltransferase [Yersinia pestis PY-113]
gi|411175700|gb|EKS45726.1| ribosomal RNA large subunit methyltransferase N [Yersinia pestis
INS]
Length = 398
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|238797961|ref|ZP_04641451.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
gi|238718166|gb|EEQ09992.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
mollaretii ATCC 43969]
Length = 398
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-DYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|312910636|ref|ZP_07769477.1| radical SAM enzyme, Cfr family, partial [Enterococcus faecalis
DAPTO 516]
gi|311289012|gb|EFQ67568.1| radical SAM enzyme, Cfr family [Enterococcus faecalis DAPTO 516]
Length = 360
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
A GQ+
Sbjct: 340 AFGQI 344
>gi|50083794|ref|YP_045304.1| Fe-S-cluster redox enzyme [Acinetobacter sp. ADP1]
gi|81393776|sp|Q6FEM6.1|RLMN_ACIAD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|49529770|emb|CAG67482.1| conserved hypothetical protein; putative Fe-S-cluster redox enzyme
[Acinetobacter sp. ADP1]
Length = 414
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 120/193 (62%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V ++ IM + +S +R+T+ST G+V I+K +L + LA+SLHA
Sbjct: 203 MGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAEEL-DVALAISLHA 261
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P +R +++P + +PLE+L+ A + Y +++++ + IEY+MLDGVND +HA Q
Sbjct: 262 PNNPLRDELVPINKKYPLEQLIAAAQRYITKDGNESARKHVTIEYVMLDGVNDHPEHAQQ 321
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L KLL+ +NLIPFNP R SS +++ +FQK L + + T+R+ G DI
Sbjct: 322 LVKLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIMAFQKTLSDAGFV-CTIRQTRGDDID 379
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 380 AACGQLVGQVADR 392
>gi|400287779|ref|ZP_10789811.1| hypothetical protein PPAM21_06876 [Psychrobacter sp. PAMC 21119]
Length = 409
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 124/209 (59%), Gaps = 10/209 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M + + +S +R+T+ST G+V + + D+ + LA+SLHA
Sbjct: 204 MGEPLLNYKPVVGSMELMLSDHAYGLSKRRVTLSTSGVVPKMYQLAQDI-DVALAISLHA 262
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
P ++R +++P + +PLE+LM A + Y ++ + IEY+MLDGVND +HAHQL
Sbjct: 263 PNDELRNELVPINKKYPLEELMAAARNYVYDVNPRHKKHVTIEYVMLDGVNDSNEHAHQL 322
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL +NLIPFNP + + SS++++ +F IL + T+R+ G DI
Sbjct: 323 VALLGDLPSKINLIPFNPFPH-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDA 380
Query: 176 ACGQLVVNLPDKI--SAKSTPPVTDIEDL 202
ACGQLV + D+ SA + D E++
Sbjct: 381 ACGQLVGQVADRTRRSAAWQQSIKDRENV 409
>gi|390454601|ref|ZP_10240129.1| hypothetical protein PpeoK3_11317 [Paenibacillus peoriae KCTC 3763]
Length = 365
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L + +R++ GL + P+ ITVST G+ I +F +NLA+SL
Sbjct: 163 IGEPFDNFVNLSDFIRVIKDHKGLA--IGPRHITVSTSGLADKIIEFADSDLHVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RA P+EKLM A+ Y + ++I +EYI+L GVND ++HA +L +
Sbjct: 221 HAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNRRITLEYILLKGVNDGKEHALELAE 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ S + ++ F +L+ I +VR + G DI
Sbjct: 281 LVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLK-KQGISCSVRLEHGVDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|422879396|ref|ZP_16925862.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
gi|422929242|ref|ZP_16962184.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 29667]
gi|422932213|ref|ZP_16965144.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK340]
gi|332366108|gb|EGJ43864.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1059]
gi|339615058|gb|EGQ19741.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 29667]
gi|339618997|gb|EGQ23587.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK340]
Length = 357
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 157 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 214
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 215 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 274
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 275 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 333
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 334 ACGQLRSN 341
>gi|322385917|ref|ZP_08059558.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
gi|417922526|ref|ZP_12566014.1| 23S rRNA m2A2503 methyltransferase [Streptococcus cristatus ATCC
51100]
gi|321270032|gb|EFX52951.1| cfr family radical SAM enzyme [Streptococcus cristatus ATCC 51100]
gi|342832623|gb|EGU66918.1| 23S rRNA m2A2503 methyltransferase [Streptococcus cristatus ATCC
51100]
Length = 362
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|315658497|ref|ZP_07911369.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
gi|315496826|gb|EFU85149.1| cfr family radical SAM enzyme [Staphylococcus lugdunensis M23590]
Length = 364
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + + ITVST GIV I F + +N AVSLHA
Sbjct: 176 IGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEEIQINFAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
DVR ++MP RA+ ++KLM A++ YQ+ + ++I EY + GVND+ +HA +L L+
Sbjct: 236 AKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNRRITFEYGLFGGVNDQLEHARELAHLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +TS DD + F+K L+ + T+R++ G DI ACGQ
Sbjct: 296 KNLNCHVNLIPVNHVPERNYVKTSKDD-IFKFEKELK-RLGVNATIRREQGSDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|407715866|ref|YP_006837146.1| ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
gi|407256202|gb|AFT66643.1| Ribosomal RNA large subunit methyltransferase N [Cycloclasticus sp.
P1]
Length = 359
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ V A+ +M + ++ +R+TVST G+V A+ + +++ +LAVSLHA
Sbjct: 161 MGEPLLNFNNTVTALNLMMDDFAYGLAKRRVTVSTSGVVPAMYRL-AEVSDASLAVSLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +P+ +L+ A K Y K ++ KI EY+ML GVND + AH+L +L
Sbjct: 220 PNDELRNELVPINKKYPIAELLEACKYYIKGEKRRKITFEYVMLSGVNDSVEQAHELKRL 279
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP + + ++ SS++ + F +L+ + + TT RK G DI ACG
Sbjct: 280 LADVPSKVNLIPFNPFPN-THYKRSSNNAIHRFTNVLKEA-GLITTTRKTRGDDIDAACG 337
Query: 179 QLVVNLPDK 187
QLV + DK
Sbjct: 338 QLVGKVKDK 346
>gi|260221248|emb|CBA29622.1| Ribosomal RNA large subunit methyltransferase N [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 466
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+++M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYVALVPALKVMLDDHGYGLSRRRVTVSTSGVVPMMDRLGEDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +PL++LM A + Y ++ + I EY MLDGVND +HA L +L
Sbjct: 223 PEDSLRDNLVPLNRKYPLKELMEACRRYLAHAPRDFITFEYCMLDGVNDHPEHAKLLLQL 282
Query: 119 LETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++ V NLIPFNP + R SS++ V +F +IL + TT+RK G DI A
Sbjct: 283 VKESGVPCKFNLIPFNPFPASGLLR-SSNNAVQAFARILVDG-GLVTTIRKTRGDDIDAA 340
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 341 CGQLAGDVKDR 351
>gi|261419372|ref|YP_003253054.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
Y412MC61]
gi|319766187|ref|YP_004131688.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
gi|261375829|gb|ACX78572.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC61]
gi|317111053|gb|ADU93545.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y412MC52]
Length = 365
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 115/183 (62%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY AL++ +RI+ GL + + ITVST GI+ I +F + +N A+SL
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGL--NIGARHITVSTSGIIPKIYQFADEGMQINFAISL 234
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP +A+PL KLM A++ Y + + +++ EY + GVND+ +HA QL +
Sbjct: 235 HAPTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGRRVTFEYGLFGGVNDQLEHAEQLAE 294
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + + RT ++ +F++ L+ + I T+R++ G DI AC
Sbjct: 295 LIKGLKCHVNLIPVNYVPERNYVRTPR-SQIFAFERALK-KHGINVTIRREHGHDIDAAC 352
Query: 178 GQL 180
GQL
Sbjct: 353 GQL 355
>gi|167470721|ref|ZP_02335425.1| radical SAM domain protein, Cfr family [Yersinia pestis FV-1]
Length = 319
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 113 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 171
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 172 PTDDIRDEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 231
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 232 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 289
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 290 CGQLAGEVIDR 300
>gi|422876982|ref|ZP_16923452.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056]
gi|332361790|gb|EGJ39594.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1056]
Length = 362
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|422860666|ref|ZP_16907310.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330]
gi|327469049|gb|EGF14521.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK330]
Length = 362
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|422852157|ref|ZP_16898827.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150]
gi|325694144|gb|EGD36062.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK150]
Length = 362
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|319947501|ref|ZP_08021733.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
gi|417919763|ref|ZP_12563287.1| 23S rRNA m2A2503 methyltransferase [Streptococcus australis ATCC
700641]
gi|319746441|gb|EFV98702.1| cfr family radical SAM enzyme [Streptococcus australis ATCC 700641]
gi|342831740|gb|EGU66050.1| 23S rRNA m2A2503 methyltransferase [Streptococcus australis ATCC
700641]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVLSFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKKIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|238752478|ref|ZP_04613954.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
gi|238709327|gb|EEQ01569.1| Ribosomal RNA large subunit methyltransferase N [Yersinia rohdei
ATCC 43380]
Length = 398
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|149926356|ref|ZP_01914617.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
gi|149824719|gb|EDM83933.1| hypothetical protein LMED105_13193 [Limnobacter sp. MED105]
Length = 379
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 116/193 (60%), Gaps = 5/193 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+++M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 170 MGEPLLNYDALVPALQLMLDDTAYGLSRRRVTVSTSGVVPFMDRLSQDCP-VALAVSLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +L++A Y K + + I EY+MLDGVND+ +HA QL ++
Sbjct: 229 PNDALRDHLVPLNKKYPLRELLDACLRYLKFAPRDFITFEYVMLDGVNDKPEHAQQLLEI 288
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP +++S + +F IL G+ + TTVRK G DI ACG
Sbjct: 289 AKIVPCKFNLIPFNPFPESGLLKSTS-PAIKTFVDILGGA-GVVTTVRKTRGDDIDAACG 346
Query: 179 QLVVNLPDKISAK 191
QL + D+ K
Sbjct: 347 QLAGEVRDRTKVK 359
>gi|406943843|gb|EKD75743.1| hypothetical protein ACD_44C00034G0002 [uncultured bacterium]
Length = 349
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 5/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+ + I+ + +S +R+TVST GI+ + + P + LAVSLHA
Sbjct: 161 MGEPLLNFNNVVQTLDILLDDYAYGLSKRRVTVSTSGIIPKMIELKKRSP-VALAVSLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P R +PL +LM+ +Y K ++ + +EY+MLD +ND + HA QL +L
Sbjct: 220 PNDELRNVLVPVNRKYPLSELMSVCSDYFKEEPRRAVMMEYVMLDDINDSDLHAKQLIQL 279
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ V VNLIPFNP + + S +K+ FQK L S +I TT+R+ G+DI GACG
Sbjct: 280 LKNKAVKVNLIPFNPFPKTT-YHCSPMEKIKKFQKKLMDS-DIMTTIRRTRGEDIEGACG 337
Query: 179 QLV 181
QLV
Sbjct: 338 QLV 340
>gi|422821743|ref|ZP_16869936.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353]
gi|422824102|ref|ZP_16872290.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405]
gi|422856042|ref|ZP_16902700.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1]
gi|324990694|gb|EGC22630.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK353]
gi|324993429|gb|EGC25349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK405]
gi|327461703|gb|EGF08034.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|261340821|ref|ZP_05968679.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
gi|288317247|gb|EFC56185.1| radical SAM enzyme, Cfr family [Enterobacter cancerogenus ATCC
35316]
Length = 388
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|421863302|ref|ZP_16295001.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379239|emb|CBX22196.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 364
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDYGYGLSRRRVTVSTSGMVSQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QHAH+L L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGVNDKAQHAHELINL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS + + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|334125110|ref|ZP_08499104.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|419958889|ref|ZP_14474947.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
gi|449474378|ref|XP_004154155.1| PREDICTED: dual-specificity RNA methyltransferase RlmN-like
[Cucumis sativus]
gi|295097942|emb|CBK87032.1| 23S rRNA m(2)A-2503 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
gi|333387680|gb|EGK58874.1| cfr family radical SAM enzyme [Enterobacter hormaechei ATCC 49162]
gi|388606192|gb|EIM35404.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
cloacae subsp. cloacae GS1]
Length = 388
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|125717485|ref|YP_001034618.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
sanguinis SK36]
gi|262282762|ref|ZP_06060530.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
gi|401682340|ref|ZP_10814234.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. AS14]
gi|422853733|ref|ZP_16900397.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160]
gi|422859010|ref|ZP_16905660.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057]
gi|422863122|ref|ZP_16909754.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408]
gi|422871436|ref|ZP_16917929.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087]
gi|422883583|ref|ZP_16930032.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49]
gi|205829909|sp|A3CLL3.1|RLMN_STRSV RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|125497402|gb|ABN44068.1| Fe-S-cluster redox enzyme/radical SAM enzyme, Cfr family, putative
[Streptococcus sanguinis SK36]
gi|262262053|gb|EEY80751.1| cfr family radical SAM enzyme [Streptococcus sp. 2_1_36FAA]
gi|325697044|gb|EGD38931.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK160]
gi|327458790|gb|EGF05138.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1057]
gi|327473422|gb|EGF18842.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK408]
gi|328945604|gb|EGG39755.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1087]
gi|332362856|gb|EGJ40649.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK49]
gi|400184776|gb|EJO19014.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. AS14]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|56419709|ref|YP_147027.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
kaustophilus HTA426]
gi|375008142|ref|YP_004981775.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|448237331|ref|YP_007401389.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
GHH01]
gi|81347651|sp|Q5L0S1.1|RLMN_GEOKA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|56379551|dbj|BAD75459.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359286991|gb|AEV18675.1| Ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|445206173|gb|AGE21638.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
GHH01]
Length = 365
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 115/183 (62%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY AL++ +RI+ GL + + ITVST GI+ I +F + +N A+SL
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGL--NIGARHITVSTSGIIPKIYQFADEGMQINFAISL 234
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP +A+PL KLM A++ Y + + +++ EY + GVND+ +HA QL +
Sbjct: 235 HAPTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGRRVTFEYGLFGGVNDQLEHAEQLAE 294
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + + RT ++ +F++ L+ + I T+R++ G DI AC
Sbjct: 295 LIKGLKCHVNLIPVNYVPERNYVRTPR-SQIFAFERALK-KHGINVTIRREHGHDIDAAC 352
Query: 178 GQL 180
GQL
Sbjct: 353 GQL 355
>gi|422881739|ref|ZP_16928195.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355]
gi|332363981|gb|EGJ41760.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK355]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|422866011|ref|ZP_16912636.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058]
gi|327489556|gb|EGF21349.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK1058]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEEAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|157151429|ref|YP_001449957.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
gordonii str. Challis substr. CH1]
gi|205829902|sp|A8AVZ7.1|RLMN_STRGC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|157076223|gb|ABV10906.1| radical SAM enzyme, Cfr family [Streptococcus gordonii str. Challis
substr. CH1]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|195977717|ref|YP_002122961.1| ribosomal RNA large subunit methyltransferase N [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|254807213|sp|B4U1T1.1|RLMN_STREM RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|195974422|gb|ACG61948.1| 23S rRNA methyltransferase and florfenicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 360
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 8/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMTFLRTINDDHGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPL+KL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTNRRVTFEYIMLNKVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V++F IL+ + + VR++ G DI
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPVT 197
ACGQL N K K+ T
Sbjct: 339 ACGQLRSNTMKKDRQKAAAART 360
>gi|444920988|ref|ZP_21240826.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507724|gb|ELV07898.1| Ribosomal RNA large subunit methyltransferase N [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 371
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 121/196 (61%), Gaps = 6/196 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ + +A+ IM F +S +R+T+ST G+V A+ + ++ ++LA+SLHA
Sbjct: 176 MGEPLLNFTNVTQAIDIMLNDYGFGLSKRRVTLSTSGVVPALYRLK-EVSDVSLAISLHA 234
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +PL +L+ A K Y + ++ +KI EY+ML VND E+ A L K
Sbjct: 235 PYDTLRNELVPINKKYPLAELLEACKAYITESSAYRKITWEYVMLKDVNDREEDAFALAK 294
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ VNLIPFNP + S + SS ++++ F++IL+ + TTVRK G+DI AC
Sbjct: 295 LIKDIPGKVNLIPFNPFPN-SGYECSSMNRINRFREILQ-RQGVVTTVRKTRGEDIDAAC 352
Query: 178 GQLVVNLPDKISAKST 193
GQL + D+ T
Sbjct: 353 GQLAGRVNDRTKRTKT 368
>gi|422846145|ref|ZP_16892828.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72]
gi|325688196|gb|EGD30215.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK72]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|186476180|ref|YP_001857650.1| radical SAM protein [Burkholderia phymatum STM815]
gi|205829685|sp|B2JIV3.1|RLMN_BURP8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|184192639|gb|ACC70604.1| radical SAM enzyme, Cfr family [Burkholderia phymatum STM815]
Length = 382
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 179 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 238 PNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAV 297
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R+ S +++ F ++L + + TTVRK G DI ACG
Sbjct: 298 TRDVPCKFNLIPFNPFPESGLLRSKS-EQIKRFAQVLMDA-GVVTTVRKTRGDDIDAACG 355
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 356 QLAGAVKDR 364
>gi|297530651|ref|YP_003671926.1| Cfr family radical SAM protein [Geobacillus sp. C56-T3]
gi|297253903|gb|ADI27349.1| radical SAM enzyme, Cfr family [Geobacillus sp. C56-T3]
Length = 365
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 115/183 (62%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY AL++ +RI+ GL + + ITVST GI+ I +F + +N A+SL
Sbjct: 177 IGEPFDNYDALIKFLRIVNHPKGL--NIGARHITVSTSGIIPKIYQFADEGMQINFAISL 234
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP +A+PL KLM A++ Y + + +++ EY + GVND+ +HA QL +
Sbjct: 235 HAPTNELRTKLMPINKAYPLPKLMEAVRYYIEKTGRRVTFEYGLFGGVNDQLEHAEQLAE 294
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + + RT ++ +F++ L+ + I T+R++ G DI AC
Sbjct: 295 LIKGLKCHVNLIPVNYVPERNYVRTPR-SQIFAFERALK-KHGINVTIRREHGHDIDAAC 352
Query: 178 GQL 180
GQL
Sbjct: 353 GQL 355
>gi|54307955|ref|YP_128975.1| ribosomal RNA large subunit methyltransferase N [Photobacterium
profundum SS9]
gi|81615490|sp|Q6LU52.1|RLMN_PHOPR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|46912381|emb|CAG19173.1| Conserved hypothetical protein [Photobacterium profundum SS9]
Length = 373
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM + F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDIGFGLSKRRVTVSTSGVVSGLDQMTGNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQ-KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP F + + ++ Y Q N+ + ++ +EYI+LD VND+ +HA QL
Sbjct: 226 PTDELRSQIMPINDRFNIATFLESVSRYIEQSNANRGRVTVEYILLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIPFNP S +R S+ ++ F K L Y+ TVRK G DI A
Sbjct: 286 VLLKDTPAKINLIPFNPYPG-SPYRKPSNSRIDRFMKTLM-EYDFTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|340782108|ref|YP_004748715.1| ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
gi|340556261|gb|AEK58015.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus SM-1]
Length = 370
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 111/181 (61%), Gaps = 4/181 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ +R++ + +S +R+TVST G++ + + + P +NLA+SLHA
Sbjct: 170 MGEPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETP-VNLAISLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
D+R +++P R +PL +LM A + Y +++I EY+MLDGVND + A L +LL
Sbjct: 229 SRNDLRDELVPINRHYPLAQLMAACRSYPLPPRRRITFEYVMLDGVNDSDADARALVRLL 288
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+VNLIPFNP S +R SS ++ +F++I+ S I T R+ G DI+ ACGQ
Sbjct: 289 RGLPALVNLIPFNPFPG-SPYRRSSLARIDAFREIVL-SAGIMTVTRRPRGDDIAAACGQ 346
Query: 180 L 180
L
Sbjct: 347 L 347
>gi|225870018|ref|YP_002745965.1| ribosomal RNA large subunit methyltransferase N [Streptococcus equi
subsp. equi 4047]
gi|254807212|sp|C0MBZ4.1|RLMN_STRE4 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|225699422|emb|CAW92902.1| radical SAM superfamily protein [Streptococcus equi subsp. equi
4047]
Length = 360
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 8/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMTFLRTINDDHGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPL+KL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTNRRVTFEYIMLNKVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V++F IL+ + + VR++ G DI
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPVT 197
ACGQL N K K+ T
Sbjct: 339 ACGQLRSNTMKKDRQKAAAART 360
>gi|298529502|ref|ZP_07016905.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510938|gb|EFI34841.1| radical SAM enzyme, Cfr family [Desulfonatronospira thiodismutans
ASO3-1]
Length = 332
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 117/184 (63%), Gaps = 4/184 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+ +A+ +MT L +S +R+T+STVG+ + +F S G+ LAVSLHA
Sbjct: 151 MGEPLLNWDAVKKAMYMMTDSLGLGISRRRLTLSTVGVRDRLQEFGSSRLGM-LAVSLHA 209
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P QD+R ++MP A + ++ L+ AL++Y +++I IEY++L +ND A L +LL
Sbjct: 210 PDQDLRRRLMPGAATWDIKDLVRALEQYPLAPRERITIEYVLLKDINDSPAQARALVRLL 269
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNL+ +NP G ++ + + +F+++LR S + T+RK GQDIS ACGQ
Sbjct: 270 SRVKCKVNLLAYNP-GEQEGYQPPQEKTILTFEEVLR-SKGLTVTLRKSKGQDISAACGQ 327
Query: 180 LVVN 183
L+ +
Sbjct: 328 LIAD 331
>gi|422825823|ref|ZP_16874002.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678]
gi|324995259|gb|EGC27171.1| cfr family radical SAM enzyme [Streptococcus sanguinis SK678]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRTSIMRINRSFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|300724166|ref|YP_003713483.1| pyruvate formate lyase activating enzyme 2 [Xenorhabdus nematophila
ATCC 19061]
gi|297630700|emb|CBJ91365.1| putative pyruvate formate lyase activating enzyme 2 [Xenorhabdus
nematophila ATCC 19061]
Length = 392
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E+ + ++ Y S Q ++ +EY+MLD VND + AHQL
Sbjct: 245 PTDDIRDEIVPINRKYNIEEFLAGVRRYLTKSNANQGRVTVEYVMLDHVNDSVEQAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 305 ECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 363 CGQLAGDVIDR 373
>gi|345300389|ref|YP_004829747.1| ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
gi|345094326|gb|AEN65962.1| Ribosomal RNA large subunit methyltransferase N [Enterobacter
asburiae LF7a]
Length = 388
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|312867068|ref|ZP_07727278.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0405]
gi|311097197|gb|EFQ55431.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0405]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFIRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQ-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|390951014|ref|YP_006414773.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
gi|390427583|gb|AFL74648.1| 23S rRNA m(2)A-2503 methyltransferase [Thiocystis violascens DSM
198]
Length = 365
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 120/190 (63%), Gaps = 7/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++V+A+ IM L + ++ +R+T+ST GIV I + ++ ++LAVSLHA
Sbjct: 162 MGEPLANFESVVKAMDIMQDDLAYMLAKQRVTLSTSGIVPNIYRLR-EVSDVSLAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P R +PL +L+ A K Y ++ ++K+ EY+MLDG+ND HA QL +L
Sbjct: 221 PNDALRDQLVPINRKYPLAELLPACKAYIGQDKRRKVTWEYVMLDGINDSLAHAKQLIRL 280
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGAC 177
LE +NLIPFNP S F TS +++ +F+ ++ R I RK G +I+ AC
Sbjct: 281 LEGIPSKLNLIPFNPFAG-SDFGTSPPERIEAFRLRLTRA--GIFAMTRKTRGDEIAAAC 337
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 338 GQLVGRVEDR 347
>gi|89072699|ref|ZP_01159264.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
gi|89051519|gb|EAR56973.1| hypothetical protein SKA34_19254 [Photobacterium sp. SKA34]
Length = 373
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + D + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQM-IDTIDVALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +E ++ ++ Y ++ + ++ +EY++LD VND+ +HA QL
Sbjct: 226 PTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK G DI A
Sbjct: 286 KVLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDFTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|385784623|ref|YP_005760796.1| hypothetical protein SLUG_16850 [Staphylococcus lugdunensis
N920143]
gi|418414298|ref|ZP_12987513.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|339894879|emb|CCB54176.1| conserved hypothetical protein [Staphylococcus lugdunensis N920143]
gi|410876905|gb|EKS24802.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 364
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + + ITVST GIV I F + +N AVSLHA
Sbjct: 176 IGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEGIQINFAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
DVR ++MP RA+ ++KLM A++ YQ+ + ++I EY + GVND+ +HA +L L+
Sbjct: 236 AKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNRRITFEYGLFGGVNDQLEHARELAHLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +TS DD + F+K L+ + T+R++ G DI ACGQ
Sbjct: 296 KNLNCNVNLIPVNHVPERNYVKTSKDD-IFKFEKELK-RLGVNATIRREQGSDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|186896255|ref|YP_001873367.1| ribosomal RNA large subunit methyltransferase N [Yersinia
pseudotuberculosis PB1/+]
gi|205829930|sp|B2K9Q3.1|RLMN_YERPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|186699281|gb|ACC89910.1| radical SAM enzyme, Cfr family [Yersinia pseudotuberculosis PB1/+]
Length = 398
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIEMFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|374335136|ref|YP_005091823.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
gi|372984823|gb|AEY01073.1| ribosomal RNA large subunit methyltransferase N [Oceanimonas sp.
GK1]
Length = 372
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+R+M F +S +R+T+ST G+V A++K +D+ + LAVSLHA
Sbjct: 166 MGEPLLNLNNVVPAMRLMLEDYGFGLSKRRVTLSTSGVVPALDKL-ADMIDVALAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + + +L+ +++ Y + K+ IEY++LD VND+ QHAH+L
Sbjct: 225 PNDQLRSEIMPINDKYNIAELIASIRRYLAVSNANHGKVTIEYVLLDHVNDDMQHAHELA 284
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP + + S+ ++ F K+L Y T+RK G DI A
Sbjct: 285 ELLKDLPCKINLIPFNPFPG-NPYGKPSNSRIDRFNKVLM-QYGNTVTIRKTRGDDIDAA 342
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 343 CGQLVGDVIDR 353
>gi|289551002|ref|YP_003471906.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
gi|289180534|gb|ADC87779.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
lugdunensis HKU09-01]
Length = 364
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + + ITVST GIV I F + +N AVSLHA
Sbjct: 176 IGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIVPRIYDFADEGIQINFAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
DVR ++MP RA+ ++KLM A++ YQ+ + ++I EY + GVND+ +HA +L L+
Sbjct: 236 AKDDVRSKLMPINRAYNVDKLMEAIRYYQQKTNRRITFEYGLFGGVNDQLEHARELAHLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +TS DD + F+K L+ + T+R++ G DI ACGQ
Sbjct: 296 KNLNCHVNLIPVNHVPERNYVKTSKDD-IFKFEKELK-RLGVNATIRREQGSDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|333375090|ref|ZP_08466914.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
gi|332971507|gb|EGK10457.1| cfr family radical SAM enzyme [Kingella kingae ATCC 23330]
Length = 364
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPLANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR +I+P + +PL++LM A Y K + I EY+MLDGVND+ +HA +L +L
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLVKAPRDFITFEYVMLDGVNDKPEHARELVEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS+ ++ F++IL + ++ TTVRK G DI ACG
Sbjct: 282 VKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVKDK 348
>gi|424864659|ref|ZP_18288562.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
gi|400759405|gb|EJP73587.1| radical SAM enzyme, Cfr family [SAR86 cluster bacterium SAR86B]
Length = 360
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 6/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +VE+ +IM + +S KRIT+ST GIV I +D+ ++LA+SLHA
Sbjct: 161 MGEPLLNYENVVESAQIMKDQNAYGLSRKRITISTSGIVPQILNLPNDID-VSLAISLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P D+R +I+P +PL++L+++ K Y K+ +++ I IEYI++ VND +HA +L K
Sbjct: 220 PNDDLRNEIVPINNKYPLKELISSCKTYLKSFTNKKNITIEYILIKEVNDSLEHAKELSK 279
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L +NLIPFNP + SSD +++F+ L I TVR+ G I GAC
Sbjct: 280 ILNHLNCKINLIPFNPFDGC-DYERSSDQDINAFKSFLMKKGFI-ATVRRTRGDLIDGAC 337
Query: 178 GQLVVNLPDKISAK 191
GQLV NL K
Sbjct: 338 GQLVGNLNKATKGK 351
>gi|255021262|ref|ZP_05293311.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
gi|254969273|gb|EET26786.1| Ribosomal RNA large subunit methyltransferase N [Acidithiobacillus
caldus ATCC 51756]
Length = 357
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 111/181 (61%), Gaps = 4/181 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ +R++ + +S +R+TVST G++ + + + P +NLA+SLHA
Sbjct: 157 MGEPLLNLKQVIPVIRLLLDDFAYGLSSRRVTVSTAGVLPGLEQLGRETP-VNLAISLHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
D+R +++P R +PL +LM A + Y +++I EY+MLDGVND + A L +LL
Sbjct: 216 SRNDLRDELVPINRHYPLAQLMAACRSYPLPPRRRITFEYVMLDGVNDSDADARALVRLL 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+VNLIPFNP S +R SS ++ +F++I+ S I T R+ G DI+ ACGQ
Sbjct: 276 RGLPALVNLIPFNPFPG-SPYRRSSLARIDAFREIVL-SAGIMTVTRRPRGDDIAAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|414563525|ref|YP_006042486.1| 23S rRNA methyltransferase and flSese_enicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846590|gb|AEJ24802.1| 23S rRNA methyltransferase and flSese_enicol/chloramphenicol
resistance protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 360
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 8/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMTFLRTINDDHGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPL+KL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTNRRVTFEYIMLNKVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V++F IL+ + + VR++ G DI
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPVT 197
ACGQL N K K+ T
Sbjct: 339 ACGQLRSNTIKKDRQKAAAART 360
>gi|337281536|ref|YP_004621007.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
15912]
gi|419800614|ref|ZP_14325887.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0449]
gi|335369129|gb|AEH55079.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
15912]
gi|385694548|gb|EIG25143.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
F0449]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYNNVLKFIRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQ-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|119897215|ref|YP_932428.1| hypothetical protein azo0924 [Azoarcus sp. BH72]
gi|205829650|sp|A1K3Y6.1|RLMN_AZOSB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119669628|emb|CAL93541.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 375
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+R+M + +S +R+TVST GIV AI++ + P + LAVSLHA
Sbjct: 176 MGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAIDRLRDECP-VALAVSLHA 234
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+R +++P + +PL +LM A + Y ++ + I EY+MLDGVND+E HA +L L
Sbjct: 235 SNDALRDRLVPINQKYPLRELMAACQRYLERAPRDFITFEYVMLDGVNDQEAHARELIAL 294
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S F+ S+ +++ F IL + I TT RK G D+ ACG
Sbjct: 295 VRDVPCKFNLIPFNPFPN-SGFQRSNAERIRRFAGILLDA-GIVTTTRKTRGDDVDAACG 352
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 353 QLAGQVQDK 361
>gi|306829710|ref|ZP_07462899.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
gi|304428061|gb|EFM31152.1| cfr family radical SAM enzyme [Streptococcus mitis ATCC 6249]
Length = 361
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 4/200 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDSLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPVT 197
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAVN 360
>gi|322389001|ref|ZP_08062571.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
903]
gi|417917425|ref|ZP_12560984.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
SK236]
gi|321144306|gb|EFX39714.1| cfr family radical SAM enzyme [Streptococcus parasanguinis ATCC
903]
gi|342830062|gb|EGU64401.1| 23S rRNA m2A2503 methyltransferase [Streptococcus parasanguinis
SK236]
Length = 362
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ +R + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYNNVLKFIRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNDLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKQ-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|408356068|ref|YP_006844599.1| ribosomal RNA large subunit methyltransferase N [Amphibacillus
xylanus NBRC 15112]
gi|407726839|dbj|BAM46837.1| ribosomal RNA large subunit methyltransferase N [Amphibacillus
xylanus NBRC 15112]
Length = 353
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY + +R + GL + + ITVST G+ H I F + +NLAVSL
Sbjct: 164 IGEPFDNYDNTMNFLRTVNDPDGLA--IGARHITVSTSGLAHKIRAFADEQLQVNLAVSL 221
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKLM+A+ Y + + +++ EYI+L GVND+++HA QL
Sbjct: 222 HAPNNELRTSIMKINRAFPIEKLMDAIDYYLEKTNRRVTFEYILLKGVNDQKEHALQLVN 281
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ +Q+ S + F ++L I VR + G DI
Sbjct: 282 LLKDKRHLSYVNLIPYNPVEEHNQYERSEKQTIVDFYEVLLKQ-GINCGVRVEQGSDIDA 340
Query: 176 ACGQL 180
ACGQL
Sbjct: 341 ACGQL 345
>gi|319939639|ref|ZP_08013998.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
anginosus 1_2_62CV]
gi|319811228|gb|EFW07534.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
anginosus 1_2_62CV]
Length = 367
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 169 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 227 HAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 345
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 346 ACGQLRSN 353
>gi|225156281|ref|ZP_03724759.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
gi|224803013|gb|EEG21258.1| radical SAM enzyme, Cfr family [Diplosphaera colitermitum TAV2]
Length = 367
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 3/184 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY A++ A+ I+ G + ++IT+STVG+V I + + ++LAVSLH
Sbjct: 182 MGEPLHNYDAVMRAIDILRDGNGLALGARKITLSTVGVVPGIIRLADEHNPVHLAVSLHG 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
Q R ++PAARA+PL+ LM A + Y + Q++IF E+ +++G ND A +G+LL
Sbjct: 242 ATQAERAALVPAARAWPLDALMEACRYYVQKQQRRIFFEWTLIEGKNDGPDQARAVGRLL 301
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
Q VNLIP NP + D FQ +L + + +T+R++ G DI CGQ
Sbjct: 302 RGMQAQVNLIPLNPTSGYAG-EPGRADAAKRFQAVL-AEHGLPSTIRQRRGIDIGAGCGQ 359
Query: 180 LVVN 183
L
Sbjct: 360 LATE 363
>gi|319794361|ref|YP_004156001.1| radical SAM protein [Variovorax paradoxus EPS]
gi|315596824|gb|ADU37890.1| radical SAM enzyme, Cfr family [Variovorax paradoxus EPS]
Length = 384
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 115/194 (59%), Gaps = 7/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R M + +S +R+TVST G+V I++ +D + +AVSLHA
Sbjct: 165 MGEPLQNYTALVPALRTMLDDNAYGLSRRRVTVSTSGVVPMIDRLGTDC-AVAMAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+ +L+ A K Y +++ + I EY MLDGVND+ +HA QL +L
Sbjct: 224 PNDALRDDLVPLNRKYPIAELLEACKRYLEHAPRDFITFEYCMLDGVNDQPEHARQLVEL 283
Query: 119 LETFQVVV--NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ V NLIPFNP + R S +V +F + L + TTVRK G DI A
Sbjct: 284 VRKHDVSCKFNLIPFNPFPASGLLR-SPQPRVLAFARTL-SEAGLVTTVRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDKISA 190
CGQL ++ D+ A
Sbjct: 342 CGQLAGDVKDRTRA 355
>gi|410694045|ref|YP_003624667.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
gi|294340470|emb|CAZ88851.1| putative radical SAM enzyme, Cfr family, yfgB [Thiomonas sp. 3As]
Length = 379
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCP-VALAVSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
PV +R +++P R +PL +L+ A K Y + + I EY MLDGVND A L +L
Sbjct: 230 PVDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAQDLVRL 289
Query: 119 LETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ QV NLIPFNP S + SS +V++F ++L + + TTVRK G DI A
Sbjct: 290 VRAAQVNCKFNLIPFNPFPQ-SGLKRSSAARVAAFAQVLLDA-GLVTTVRKTRGDDIDAA 347
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 348 CGQLAGEVQDR 358
>gi|418962985|ref|ZP_13514832.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383344607|gb|EID22766.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 367
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 169 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 227 HAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 345
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 346 ACGQLRSN 353
>gi|55981906|ref|YP_145203.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB8]
gi|81363686|sp|Q5SGZ3.1|RLMN_THET8 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|55773319|dbj|BAD71760.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 355
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 111/195 (56%), Gaps = 3/195 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +++AVRIM +SP+R+T+STVGI I + + G+ LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R +I+P A +P+ ++M A++ Y +++++ EY +L GVND A L KLL
Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGVNDHLWQARLLAKLL 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIPFNP T ++ +++ R + T++R GQD+ ACGQ
Sbjct: 278 KGLSAHVNLIPFNPWEGAPVVGTPRAGVLAFAEELKR--LGVPTSIRWSRGQDVGAACGQ 335
Query: 180 LVVNLPDKISAKSTP 194
L + +P ++ P
Sbjct: 336 LALKVPRPLTLTPLP 350
>gi|422023278|ref|ZP_16369783.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
gi|414094046|gb|EKT55716.1| ribosomal RNA large subunit methyltransferase N [Providencia
sneebia DSM 19967]
Length = 384
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R IMP + + +E + +++ Y S ++ +EY+MLD +ND +HAHQL
Sbjct: 237 PTDEIRDDIMPINKKYNIETFLGSVRRYLSKSNANSGRVTVEYVMLDHINDSTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 297 ECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 355 CGQLAGEVIDR 365
>gi|90579368|ref|ZP_01235178.1| hypothetical protein VAS14_06663 [Photobacterium angustum S14]
gi|90440201|gb|EAS65382.1| hypothetical protein VAS14_06663 [Photobacterium angustum S14]
Length = 373
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +E ++ ++ Y ++ + ++ +EY++LD VND+ +HA QL
Sbjct: 226 PTDELRSQIMPINDRWNIEAFLDVVRRYVNSTNANRGRVTVEYVLLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK G DI A
Sbjct: 286 KVLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDFTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|410627452|ref|ZP_11338191.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
gi|410152944|dbj|GAC24960.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola mesophila
KMM 241]
Length = 380
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 173 MGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH+L
Sbjct: 232 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 291
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK G DI A
Sbjct: 292 KVLADTPCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAA 349
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 350 CGQLVGDVVDR 360
>gi|296136235|ref|YP_003643477.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
gi|295796357|gb|ADG31147.1| radical SAM enzyme, Cfr family [Thiomonas intermedia K12]
Length = 379
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 171 MGEPLQNYSALVPALRTMLDDDGYGLSRRRVTVSTSGVVPMIDRLSQDCP-VALAVSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
PV +R +++P R +PL +L+ A K Y + + I EY MLDGVND A L +L
Sbjct: 230 PVDALRDELVPLNRKYPLHELLAACKRYLDFAPRDFITFEYCMLDGVNDTPALAEDLVRL 289
Query: 119 LETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ QV NLIPFNP S + SS +V++F ++L + + TTVRK G DI A
Sbjct: 290 VRAAQVNCKFNLIPFNPFPQ-SGLKRSSAARVAAFAQVLLDA-GLVTTVRKTRGDDIDAA 347
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 348 CGQLAGEVQDR 358
>gi|225868978|ref|YP_002744926.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
gi|259491996|sp|C0MD67.1|RLMN_STRS7 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|225702254|emb|CAX00012.1| radical SAM superfamily protein [Streptococcus equi subsp.
zooepidemicus]
Length = 360
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 119/202 (58%), Gaps = 8/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMTFLRTINDDHGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPL+KL +A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLDKLFSAIEYYIETTNRRVTFEYIMLNKVNDGVEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++V++F IL+ + + VR++ G DI
Sbjct: 280 LTKRIRKLSYVNLIPYNPVSEHDQYSRSPKERVAAFYDILKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPVT 197
ACGQL N K K+ T
Sbjct: 339 ACGQLRSNTMKKDRQKAATART 360
>gi|197285703|ref|YP_002151575.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
HI4320]
gi|227356214|ref|ZP_03840603.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|425068640|ref|ZP_18471756.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
gi|425071894|ref|ZP_18475000.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|254807194|sp|B4EZT6.1|RLMN_PROMH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|194683190|emb|CAR43831.1| radical SAM superfamily protein [Proteus mirabilis HI4320]
gi|227163678|gb|EEI48594.1| Fe-S-cluster oxidoreductase [Proteus mirabilis ATCC 29906]
gi|404598263|gb|EKA98749.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW4]
gi|404599019|gb|EKA99481.1| ribosomal RNA large subunit methyltransferase N [Proteus mirabilis
WGLW6]
Length = 393
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+TVST G+V A++K +D + LA+SLHA
Sbjct: 187 MGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKL-ADAVDVALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P + + +E ++ ++ Y S Q ++ +EY+MLD +ND + AHQL
Sbjct: 246 PTDDIRDEIVPINKKYNIEMFLDGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 306 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 364 CGQLAGDVIDR 374
>gi|109899434|ref|YP_662689.1| ribosomal RNA large subunit methyltransferase N [Pseudoalteromonas
atlantica T6c]
gi|109701715|gb|ABG41635.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 380
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 173 MGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH+L
Sbjct: 232 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 291
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK G DI A
Sbjct: 292 KVLADTPCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAA 349
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 350 CGQLVGDVVDR 360
>gi|312866070|ref|ZP_07726291.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
gi|311098474|gb|EFQ56697.1| 23S rRNA m2A2503 methyltransferase [Streptococcus downei F0415]
Length = 375
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 116/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 174 IGEPFDNYDNVIRFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGIQVNLAVSL 231
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL +A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 232 HAPNNELRSSIMRINRSFPLEKLFDAIEYYIQTTNRRVTFEYIMLNEVNDYPENAQELAD 291
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L ++ + + VNLIP+N + Q+ S+ ++V +F +L+ + + VR++ G DI
Sbjct: 292 LTKSIRKLSYVNLIPYNAVSEHDQYSRSTKERVDAFYDVLKKN-GVNCVVRQEHGTDIDA 350
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 351 ACGQLRSN 358
>gi|238763546|ref|ZP_04624507.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
gi|238698178|gb|EEP90934.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
kristensenii ATCC 33638]
Length = 398
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|418965306|ref|ZP_13517083.1| 23S rRNA m2A2503 methyltransferase [Streptococcus constellatus
subsp. constellatus SK53]
gi|383342813|gb|EID21016.1| 23S rRNA m2A2503 methyltransferase [Streptococcus constellatus
subsp. constellatus SK53]
Length = 360
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|123441415|ref|YP_001005402.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|205829928|sp|A1JKR9.1|RLMN_YERE8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|122088376|emb|CAL11167.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 398
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|335032098|ref|ZP_08525505.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus SK52 =
DSM 20563]
gi|333767769|gb|EGL44992.1| 23S rRNA m2A2503 methyltransferase [Streptococcus anginosus SK52 =
DSM 20563]
Length = 367
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 169 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 227 HAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELTE 286
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 287 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 345
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 346 ACGQLRSN 353
>gi|238897947|ref|YP_002923627.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465705|gb|ACQ67479.1| radical SAM domain protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 393
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 195 MGEPLLNINNVVPAMAIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 253
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +++P R + +E L+ A++ Y S Q ++ IEY+ML+ VND + AHQL
Sbjct: 254 PTDDIRNELVPINRKYNIETLLAAVRRYLTKSNANQGRVTIEYVMLNHVNDSLKQAHQLA 313
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ +NLIP+NP R SS+ ++ F K+L Y+ T +RK G DI A
Sbjct: 314 DCLKNTPCKINLIPWNPFPGADYGR-SSNSRIDRFAKVLM-QYDFTTIIRKTRGNDIDAA 371
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 372 CGQLAGDVIDR 382
>gi|205829853|sp|Q15R53.2|RLMN_PSEA6 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 376
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 169 MGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH+L
Sbjct: 228 PDDKLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHELA 287
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK G DI A
Sbjct: 288 KVLADTPCKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAA 345
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 346 CGQLVGDVVDR 356
>gi|261345336|ref|ZP_05972980.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
gi|282566377|gb|EFB71912.1| radical SAM enzyme, Cfr family [Providencia rustigianii DSM 4541]
Length = 393
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDVALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P DVR +I+P + + +E +N++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 246 PTDDVRDEIVPINKKYNIETFLNSVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 306 ECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 364 CGQLAGDVIDR 374
>gi|423069054|ref|ZP_17057842.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius F0395]
gi|355365454|gb|EHG13177.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius F0395]
Length = 360
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|343524663|ref|ZP_08761621.1| 23S rRNA m2A2503 methyltransferase [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|343398312|gb|EGV10845.1| 23S rRNA m2A2503 methyltransferase [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
Length = 360
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GINCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|417934072|ref|ZP_12577392.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
F0392]
gi|340770642|gb|EGR93157.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
F0392]
Length = 361
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|336451639|ref|ZP_08622076.1| methyltransferase [Idiomarina sp. A28L]
gi|336281452|gb|EGN74732.1| methyltransferase [Idiomarina sp. A28L]
Length = 378
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N LV A+++M + +S +RITVST G+V A+++ + + LA+SLHA
Sbjct: 169 MGEPLLNMKNLVPALQLMLEDFGYGLSKRRITVSTSGVVPALDQLREQV-DVALAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +I+P + +P+ + + A + Y + S Q K+ +EY+M+D +ND +HAH+L +
Sbjct: 228 PNNKLRDEIVPINKKYPIAEFLAASRRYVEASKAQTKVTVEYVMIDHINDSTEHAHELAE 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L+ +NLIPFNP S++ SS+ ++ F K+L Y VRK G DI AC
Sbjct: 288 VLKDTPSKINLIPFNPFPG-SEYGRSSNSRIDRFSKVLM-DYGYTVIVRKTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 346 GQLVGDVVDR 355
>gi|440510102|ref|YP_007347538.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
gi|440454315|gb|AGC03807.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia chromaiodes str. 640]
Length = 373
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 11/195 (5%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHS--DLPGLNLAVSL 57
MGEPL N +V A+RI + L F++S + IT+ST GIV I K + D+P LA+SL
Sbjct: 178 MGEPLLNIVNVVSAIRIILDDLGFKLSKRHITLSTAGIVPGIEKLKNMIDIP---LAISL 234
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIMLDGVNDEEQHAHQ 114
HAP +R +IMP + + + ++ A + Y K++ +I IEY++L +ND+ HAHQ
Sbjct: 235 HAPNDIIRNKIMPINKKYNINSVLEAARRYSIDTKSNHGRITIEYVLLKNINDDVLHAHQ 294
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L K L+ +NLIP+NPI ++ ++ SS ++ +F K+L YNI T +RK G DI+
Sbjct: 295 LAKQLQGIPCKINLIPWNPIPNI-RYACSSQIRMRAFLKVLL-KYNIITIIRKIRGADIN 352
Query: 175 GACGQLVVNLPDKIS 189
ACGQL + ++I+
Sbjct: 353 AACGQLTGEVINRIN 367
>gi|284006771|emb|CBA72033.1| radical SAM superfamily protein [Arsenophonus nasoniae]
Length = 389
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 183 MGEPLLNLNNVIPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + +++ Y S Q ++ +EY+ML+GVND +HAHQL
Sbjct: 242 PTDEIRDEIVPINKKYNIETFLASVRRYLTKSNANQGRVTVEYVMLNGVNDSIEHAHQLA 301
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP + + SS+ ++ F K+L Y T VRK G DI A
Sbjct: 302 ECLKHTPSKINLIPWNPFPG-APYSRSSNSRIDRFAKVLM-KYGFTTIVRKTRGDDIDAA 359
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 360 CGQLAGDVIDR 370
>gi|270156690|ref|ZP_06185347.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|289164863|ref|YP_003455001.1| Fe-S containing enzyme [Legionella longbeachae NSW150]
gi|269988715|gb|EEZ94969.1| Cfr family radical SAM enzyme [Legionella longbeachae D-4968]
gi|288858036|emb|CBJ11896.1| putative Fe-S containing enzyme [Legionella longbeachae NSW150]
Length = 376
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 117/191 (61%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMDIMMDDFAYGLSKRRVTLSTSGVLPDLERLREVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +LM K Y KN ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PNDELRNELVPINKKYPLAQLMALCKIYFKNEPRRKVTFEYVMLKGVNDQPEHAIQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q+ SS + + +F++ L ++ I T RK G DI ACG
Sbjct: 286 LRNIPAKVNLIPFNPF-PMTQYERSSQETIDAFREKLM-AHGINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + D+ +
Sbjct: 344 QLAGEVKDRTT 354
>gi|417937398|ref|ZP_12580698.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK970]
gi|343391662|gb|EGV04235.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK970]
Length = 361
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I +F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAEV 359
>gi|238788173|ref|ZP_04631968.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
gi|238723760|gb|EEQ15405.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
frederiksenii ATCC 33641]
Length = 398
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|83589757|ref|YP_429766.1| hypothetical protein Moth_0906 [Moorella thermoacetica ATCC 39073]
gi|123752954|sp|Q2RK16.1|RLMN_MOOTA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|83572671|gb|ABC19223.1| 23S rRNA m(2)A-2503 methyltransferase [Moorella thermoacetica ATCC
39073]
Length = 354
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPLNNY A+++ VRI +G + +S +RIT+ST GIV I + + P L LAVSL
Sbjct: 168 MGEPLNNYEAVMKGVRIFEDPSG--WGISHRRITLSTCGIVPGIERLAREKPPLELAVSL 225
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA ++R ++MP R +PLE+L+ A + Y + + +++ EY ++ GVND + A L +
Sbjct: 226 HAVTNELRDKLMPINRRYPLEELIPACRRYAEITGRRVTFEYALIAGVNDRREDARGLSR 285
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VN+IP NP+ S F+ +F +L+ + +R GQDI+ AC
Sbjct: 286 LLRDMLAFVNIIPLNPVAG-SGFKGVPPAAARAFVALLQ-EAGLEAAIRDSRGQDIAAAC 343
Query: 178 GQL 180
GQL
Sbjct: 344 GQL 346
>gi|387888362|ref|YP_006318660.1| radical SAM protein [Escherichia blattae DSM 4481]
gi|414593916|ref|ZP_11443557.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
gi|386923195|gb|AFJ46149.1| radical SAM enzyme [Escherichia blattae DSM 4481]
gi|403195173|dbj|GAB81209.1| ribosomal RNA large subunit methyltransferase N [Escherichia
blattae NBRC 105725]
Length = 388
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + +E + A++ Y + S Q ++ IEY+MLD +ND +HAHQL
Sbjct: 241 PNDTIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHINDGVEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K L Y T VRK G DI A
Sbjct: 301 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKTLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 359 CGQLAGEVIDR 369
>gi|358464570|ref|ZP_09174534.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
058 str. F0407]
gi|357066970|gb|EHI77103.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. oral taxon
058 str. F0407]
Length = 349
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 114/200 (57%), Gaps = 4/200 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 150 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 209
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 210 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 269
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 270 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 328
Query: 178 GQLVVNLPDKISAKSTPPVT 197
GQL N + K+ V
Sbjct: 329 GQLRSNTMKRDRQKAVAAVN 348
>gi|390568820|ref|ZP_10249112.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|420250111|ref|ZP_14753338.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
gi|389939169|gb|EIN01006.1| radical SAM enzyme, Cfr family protein [Burkholderia terrae BS001]
gi|398062477|gb|EJL54251.1| 23S rRNA methyltransferase [Burkholderia sp. BT03]
Length = 382
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 179 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 238 PNDALRDVLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAV 297
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP FR S ++++ F ++L + + TTVRK G DI ACG
Sbjct: 298 TRDVPCKFNLIPFNPFPESGLFR-SKNEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACG 355
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 356 QLAGAVKDR 364
>gi|385259938|ref|ZP_10038094.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. SK140]
gi|385192975|gb|EIF40364.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. SK140]
Length = 361
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I +F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAEV 359
>gi|85059741|ref|YP_455443.1| ribosomal RNA large subunit methyltransferase N [Sodalis
glossinidius str. 'morsitans']
gi|123752598|sp|Q2NS37.1|RLMN_SODGM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|84780261|dbj|BAE75038.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 393
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A+ K D+ + LA+SLHA
Sbjct: 187 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALEKL-GDMIDVALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + +E ++A++ Y S + ++ +EY+MLD +ND +HAHQL
Sbjct: 246 PNDTIRDEIVPINRKYNIETFLSAVRCYLDKSNANKGRVTVEYVMLDHINDGTEHAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ +NLIP+NP R SS+ +V F K+L G Y T VRK G DI A
Sbjct: 306 ACLKYTPCKINLIPWNPFPGAPYGR-SSNSRVDRFAKVLMG-YEFTTIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 364 CGQLAGEVIDR 374
>gi|418975392|ref|ZP_13523297.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK1074]
gi|383347747|gb|EID25721.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK1074]
Length = 361
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|146293751|ref|YP_001184175.1| ribosomal RNA large subunit methyltransferase N [Shewanella
putrefaciens CN-32]
gi|205829884|sp|A4Y8U3.1|RLMN_SHEPC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145565441|gb|ABP76376.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens CN-32]
Length = 373
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL+E VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 KLMEDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|417937388|ref|ZP_12580690.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis X]
gi|343398663|gb|EGV11194.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis X]
Length = 361
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I +F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAEV 359
>gi|238785318|ref|ZP_04629307.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
gi|238713771|gb|EEQ05794.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
bercovieri ATCC 43970]
Length = 398
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRNEIVPINRKYNIETFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|82703494|ref|YP_413060.1| hypothetical protein Nmul_A2379 [Nitrosospira multiformis ATCC
25196]
gi|123768149|sp|Q2Y6F3.1|RLMN_NITMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|82411559|gb|ABB75668.1| 23S rRNA m(2)A-2503 methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 365
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V ++ +M + +S +R+TVST GI+ A+++ P + LAVSLHA
Sbjct: 167 MGEPLTNFENVVTSLDLMLDDNAYGLSRRRVTVSTSGIIPAMDRLRERCP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P R +P+ +L+ A + Y Q + I EY+MLDGVND A +L +L
Sbjct: 226 PNDALRDQLVPINRKYPIRELLGACERYLQSAPRDFITFEYVMLDGVNDSVAQARELVQL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ +NLIPFNP S FR SS + VS F+ +L + + TTVRK G DI+ ACG
Sbjct: 286 VRDIPCKLNLIPFNPFPD-SGFRRSSANAVSRFRDVLMEA-GLVTTVRKTRGDDIAAACG 343
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 344 QLAGKVLDK 352
>gi|329120380|ref|ZP_08249047.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462335|gb|EGF08661.1| cfr family radical SAM enzyme [Neisseria bacilliformis ATCC
BAA-1200]
Length = 362
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPLANYDNVVRSLSVMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR QI+P + +PL+ LM A + Y K + + EY+MLDGVND+ +HA +L KL
Sbjct: 222 SNDHVRDQIVPLNKKYPLKDLMAACRRYLVKAPRDFVTFEYVMLDGVNDKAEHARELLKL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+E NLIPFNP S + SS + + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VEDVPCKFNLIPFNPFPH-SGYERSSAENIRIFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVKDK 348
>gi|407781692|ref|ZP_11128909.1| radical SAM enzyme [Oceanibaculum indicum P24]
gi|407207318|gb|EKE77255.1| radical SAM enzyme [Oceanibaculum indicum P24]
Length = 383
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A++I M G +S ++IT+ST G+V A+ K +L G+NLAVSLHA
Sbjct: 189 MGEPLYNYDNVAKALKIIMDGEGIALSRRKITLSTAGVVPAMAKCGEEL-GVNLAVSLHA 247
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R I+P R + L +L+ A ++Y S ++I EY+ML GVND ++ AH L KL
Sbjct: 248 VTDEIRDVIVPLNRKYKLAELIQACRDYPGASNARRITFEYVMLKGVNDSDEDAHALVKL 307
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
LE +NLIPFNP S F SS+ ++ F KIL + + VR G DI ACG
Sbjct: 308 LEGIPAKMNLIPFNPWPG-SPFERSSNTRIDKFSKILMAA-GYASPVRTTRGADIMAACG 365
Query: 179 QL 180
QL
Sbjct: 366 QL 367
>gi|443474683|ref|ZP_21064654.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
gi|443020573|gb|ELS34518.1| 23S rRNA m(2)A-2503 methyltransferase [Pseudanabaena biceps PCC
7429]
Length = 355
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 111/180 (61%), Gaps = 3/180 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
MGEPL NY LV A+ ++ + + ITVSTVGI + I +F + + LAVSLHAP
Sbjct: 169 MGEPLLNYENLVGAIGVINK-DIGIGQRNITVSTVGIPNQIPRFAEEHLQVTLAVSLHAP 227
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
Q+VR Q++P+A +PL LM+ +EY + + ++I EY +L GVND + A +L L+
Sbjct: 228 TQEVRAQVIPSADRYPLIALMDDCREYVEITGRRISFEYTLLAGVNDSAEQAQELAYLIR 287
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
FQ VNLIP+NP+ S + ++ S+ + +F +IL + I +VR+ G + ACGQL
Sbjct: 288 GFQSHVNLIPYNPV-SDADYKRPSERAIQTFVQILE-DHKIAVSVRRTRGLEADAACGQL 345
>gi|332162639|ref|YP_004299216.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|418241088|ref|ZP_12867621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|433548003|ref|ZP_20504053.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
gi|325666869|gb|ADZ43513.1| hypothetical protein YE105_C3019 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859271|emb|CBX69621.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica W22703]
gi|351779572|gb|EHB21678.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|431790563|emb|CCO67093.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica IP 10393]
Length = 397
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 191 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 249
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 250 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 309
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 310 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 367
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 368 CGQLAGEVIDR 378
>gi|420259500|ref|ZP_14762205.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
gi|404513031|gb|EKA26861.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. enterocolitica WA-314]
Length = 396
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 190 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 248
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 249 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 308
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 309 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 366
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 367 CGQLAGEVIDR 377
>gi|345022595|ref|ZP_08786208.1| hypothetical protein OTW25_14956 [Ornithinibacillus scapharcae
TW25]
Length = 355
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 109/183 (59%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +N+ LV +R++ ++ + ITVST G+ H I +F +NLA+SLHA
Sbjct: 163 IGEPFDNFTNLVNFIRVVNDEKGLKIGQRHITVSTSGLAHKIYEFADTGLQVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKLM A+ Y + S ++I EYIML VND + A QL KLL
Sbjct: 223 PNDELRTSIMKINRAFPIEKLMKAVDYYLEKSNRRITYEYIMLRDVNDHKGEALQLAKLL 282
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+N + +Q++ S + +F + L+ S I + VR + G DI AC
Sbjct: 283 HKKRHLSYVNLIPYNSVEEHNQYQRSETAVIQAFHETLK-SKGINSGVRWENGADIDAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|326794512|ref|YP_004312332.1| ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
gi|326545276|gb|ADZ90496.1| Ribosomal RNA large subunit methyltransferase N [Marinomonas
mediterranea MMB-1]
Length = 373
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 118/193 (61%), Gaps = 12/193 (6%)
Query: 1 MGEPLNNYAALVEA-VRIMTGLPFQVSPKRITVSTVGIVHAINKF--HSDLPGLNLAVSL 57
MGEPL N+ +V+A + +M + +S +R+T+ST G+V I + +D+ +LA+SL
Sbjct: 170 MGEPLMNFEPVVDAMILMMHDNAYGLSKRRVTLSTSGVVPKIYELVKRTDV---SLAISL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQL 115
HAP +R +++P R +P+E+L+ A + Y N ++ I IEY M+ GVND+EQHA +L
Sbjct: 227 HAPNNPLRDELVPINRKYPIEELLEACQHYLDNLPDKRHITIEYTMMAGVNDQEQHAREL 286
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDIS 174
LL+ + VNLIPFNP S + S+++ FQKIL Y + TVR G DI
Sbjct: 287 AHLLKDLECKVNLIPFNPFPH-SGYEKPSNNQTRRFQKILADDGYTV--TVRTTRGDDID 343
Query: 175 GACGQLVVNLPDK 187
ACGQLV + DK
Sbjct: 344 AACGQLVGDFHDK 356
>gi|386311731|ref|YP_006007787.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
gi|318606744|emb|CBY28242.1| ribosomal RNA large subunit methyltransferase N [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 397
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 191 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 249
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 250 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 309
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 310 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 367
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 368 CGQLAGEVIDR 378
>gi|319760652|ref|YP_004124590.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
gi|318039366|gb|ADV33916.1| Ribosomal RNA large subunit methyltransferase N [Candidatus
Blochmannia vafer str. BVAF]
Length = 359
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 121/185 (65%), Gaps = 6/185 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V +++I + F +S +T+ST G+V I+K D+ ++LAVSLHA
Sbjct: 173 MGEPLLNLMNVVSSIQIILNSSGFNLSKHHVTLSTSGVVPGIDKL-KDMVDVSLAVSLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + + ++ L+ +++ Y K++ +K+ IEY++L+ +NDE +HAH+L
Sbjct: 232 PNDVIRNKIMPINKKYNIDCLLQSIRCYLQKTKSNNKKVTIEYVLLNRINDEIEHAHELA 291
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K L T VNL+ +N I ++ +++SD ++++F K+L+ +Y I TT+RK G DI +
Sbjct: 292 KKLITLPCKVNLMRWNSIKNIKYLKSTSDARLNNFYKVLK-NYGIVTTIRKVRGADIHAS 350
Query: 177 CGQLV 181
CGQL+
Sbjct: 351 CGQLM 355
>gi|238794833|ref|ZP_04638434.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
gi|238725846|gb|EEQ17399.1| Ribosomal RNA large subunit methyltransferase N [Yersinia
intermedia ATCC 29909]
Length = 398
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIEAFLAAVRRYLDKSKANGGRVTVEYVMLDHINDSVEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|46199876|ref|YP_005543.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus HB27]
gi|81567593|sp|Q72HC1.1|RLMN_THET2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|46197503|gb|AAS81916.1| florfenicol resistance protein [Thermus thermophilus HB27]
Length = 355
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 111/195 (56%), Gaps = 3/195 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +++AVRIM +SP+R+T+STVGI I + + G+ LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R +I+P A +P+ ++M A++ Y +++++ EY +L GVND A L KLL
Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYHAKTKRRVTFEYTLLKGVNDHLWQARLLAKLL 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIPFNP T ++ +++ R + T++R GQD+ ACGQ
Sbjct: 278 KGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKR--LGVPTSIRWSRGQDVGAACGQ 335
Query: 180 LVVNLPDKISAKSTP 194
L + +P ++ P
Sbjct: 336 LALKVPRPLTLTPLP 350
>gi|381393545|ref|ZP_09919266.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
gi|379330761|dbj|GAB54399.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola punicea DSM
14233 = ACAM 611]
Length = 388
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 181 MGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 239
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
++R +++P + +P+E+ + A++ Y K +Q ++ +EY+ML+GVND AH L
Sbjct: 240 ADNELRDELVPVNKKYPIEEFLAAVRRYLAKSKANQGRVTVEYVMLNGVNDSTDQAHALA 299
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIPFNP S + SS+ ++ F K+L SY T VRK G DI A
Sbjct: 300 RVLQDTPSKINLIPFNPYPG-SPYTCSSNSRIDRFSKVLM-SYGFTTVVRKTRGDDIDAA 357
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 358 CGQLVGDVVDR 368
>gi|309800021|ref|ZP_07694219.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
gi|308116341|gb|EFO53819.1| radical SAM enzyme, Cfr family [Streptococcus infantis SK1302]
Length = 357
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 115/196 (58%), Gaps = 4/196 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I +F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKST 193
GQL N + KS+
Sbjct: 341 GQLRSNTMKRDRQKSS 356
>gi|306825018|ref|ZP_07458361.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432845|gb|EFM35818.1| cfr family radical SAM enzyme [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 361
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPRERVMAFYDTLKKN-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|348619018|ref|ZP_08885476.1| Fragment of ribosomal RNA large subunit methyltransferase N (part
2) [Candidatus Glomeribacter gigasporarum BEG34]
gi|347815699|emb|CCD30343.1| Fragment of ribosomal RNA large subunit methyltransferase N (part
2) [Candidatus Glomeribacter gigasporarum BEG34]
Length = 250
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V A+R+M + +S +R+TVST G+V +++ LP ++LAVSLHA
Sbjct: 41 MGEPLLNFDAVVRALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLAQQLP-VSLAVSLHA 99
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY ML G+ND E+HA QL L
Sbjct: 100 PDDALRDALVPLNKKYPLRELMRACQRYLKAAPRDFITFEYCMLAGINDHEKHARQLLAL 159
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP S F S+ +++ F +IL + I TT+RK G DI ACG
Sbjct: 160 VQEIPCKFNLIPFNPFPE-SGFTRSAPEQIRRFAQIL-SARGIVTTIRKTRGDDIDAACG 217
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 218 QLAGIVNDR 226
>gi|294637694|ref|ZP_06715971.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451965885|ref|ZP_21919140.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
gi|291089124|gb|EFE21685.1| radical SAM enzyme, Cfr family [Edwardsiella tarda ATCC 23685]
gi|451315134|dbj|GAC64502.1| 23S rRNA methyltransferase RlmN [Edwardsiella tarda NBRC 105688]
Length = 411
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 205 MGEPLLNMTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 263
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R QI+P R + +E + +++ Y + S Q ++ +EY+MLD VND +HAHQL
Sbjct: 264 PNDAIRDQIVPINRKYNIETFLASVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLA 323
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP + F SS+ ++ F K+L Y VRK G DI A
Sbjct: 324 ECLKDTPCKINLIPWNPFPG-APFGRSSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 381
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 382 CGQLAGEVIDR 392
>gi|291563554|emb|CBL42370.1| 23S rRNA m(2)A-2503 methyltransferase [butyrate-producing bacterium
SS3/4]
Length = 348
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP++NY L+ +R+++ GL +S + ITVST GIV I K + + LA+SLH
Sbjct: 160 GEPMDNYDNLIRFIRLLSDENGL--NISQRNITVSTCGIVPKILKLAEEGLSITLALSLH 217
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP + R +MP A ++ L +++ A KEY K + +++ EY ++ GVND A +L L
Sbjct: 218 APDDETRKTLMPIANSYSLSEVLPACKEYYKKTGRRLTFEYSLVQGVNDNLDEAKRLTAL 277
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ Q VNLIP NPI F+ S+ D + +F+ L + I T+R++MG+DI GACG
Sbjct: 278 LKDMQGHVNLIPVNPIKE-RDFKQSNRDAIDAFRGYLE-KHGINVTIRREMGRDIGGACG 335
Query: 179 QL 180
QL
Sbjct: 336 QL 337
>gi|270292529|ref|ZP_06198740.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
gi|270278508|gb|EFA24354.1| radical SAM enzyme, Cfr family [Streptococcus sp. M143]
Length = 361
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGIEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|238753878|ref|ZP_04615238.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
gi|238707866|gb|EEQ00224.1| Ribosomal RNA large subunit methyltransferase N [Yersinia ruckeri
ATCC 29473]
Length = 398
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P R + +E + A++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDEIVPINRKYNIETFLAAVRRYLAKSNANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|91775976|ref|YP_545732.1| hypothetical protein Mfla_1623 [Methylobacillus flagellatus KT]
gi|123078840|sp|Q1H0U6.1|RLMN_METFK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|91709963|gb|ABE49891.1| 23S rRNA m(2)A-2503 methyltransferase [Methylobacillus flagellatus
KT]
Length = 362
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+T+ST G+V A+++ + P + LAVSLHA
Sbjct: 163 MGEPLANFDNVVAAMNIMLDDSAYGLSRRRVTLSTSGMVPAMDRLREECP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +I+P R +P+ +LM A + Y +K + + EY+MLDGVND +HA QL +
Sbjct: 222 PNDALRDEIVPINRKYPIAQLMAACQRYLEKAPRDFVTFEYVMLDGVNDTAEHARQLLNI 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + TS D + F+ IL + + TT RK G+DI ACG
Sbjct: 282 VQDVPCKFNLIPFNPFPN-SGYDTSKPDNIRRFRDILMQAGYVVTT-RKTRGEDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGKVQDK 348
>gi|238020955|ref|ZP_04601381.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
gi|237867935|gb|EEP68941.1| hypothetical protein GCWU000324_00852 [Kingella oralis ATCC 51147]
Length = 366
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ NY ++ A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPMANYDNVITALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKDDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR +I+P + +PL++LM A Y K + I EY+MLDG+ND+ +HA +L +L
Sbjct: 222 SNDKVRDEIVPLNKKYPLKELMAACNRYLAKAPRDFITFEYVMLDGINDKPEHARELVQL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS+ ++ F++IL + ++ TTVRK G DI ACG
Sbjct: 282 VKDTPCKFNLIPFNPFPN-SGYERSSNKNINIFKEILMEA-DLVTTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|157374568|ref|YP_001473168.1| ribosomal RNA large subunit methyltransferase N [Shewanella
sediminis HAW-EB3]
gi|205829886|sp|A8FT67.1|RLMN_SHESH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157316942|gb|ABV36040.1| radical SAM enzyme, Cfr family [Shewanella sediminis HAW-EB3]
Length = 373
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+TVST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PLE+ + ++ Y S + ++ +EY+MLD +ND AH+L
Sbjct: 226 PNDELRDVLVPVNKKYPLEEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ +NLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 KLMKDTPCKINLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|417916651|ref|ZP_12560227.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
SK95]
gi|342829349|gb|EGU63706.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis bv. 2 str.
SK95]
Length = 346
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 113/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 147 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 206
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 207 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 266
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 267 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 325
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 326 GQLRSNTMKRDRQKAVAAV 344
>gi|357032441|ref|ZP_09094379.1| putative Fe-S-cluster redox protein [Gluconobacter morbifer G707]
gi|356413978|gb|EHH67627.1| putative Fe-S-cluster redox protein [Gluconobacter morbifer G707]
Length = 403
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A++I M G +S +RIT+ST G+V +++ +L G+NLA+SLHA
Sbjct: 214 MGEPLYNYENVAKAMKIVMDGDGIALSRRRITLSTSGVVPMMDRCGDEL-GVNLAISLHA 272
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R QI+P R +P+E+LM A K Y S ++I EYIML G+ND E A +L +L
Sbjct: 273 VTNELRDQIVPLNRKYPIEELMAACKRYPAASNSRRITFEYIMLRGINDSEADARELVRL 332
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S FR S+ ++++ F I+ + + +R G+DI ACG
Sbjct: 333 IRDLPAKVNLIPFNPWPG-SDFRPSTKEQLNKFANIVMDA-GFSSPIRTPRGRDILAACG 390
Query: 179 QL 180
QL
Sbjct: 391 QL 392
>gi|337279529|ref|YP_004619001.1| hypothetical protein Rta_18910 [Ramlibacter tataouinensis TTB310]
gi|334730606|gb|AEG92982.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
Length = 385
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 117/194 (60%), Gaps = 10/194 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 165 MGEPLQNYSALVPALRTMLDDHGYGLSRRRVTVSTSGVVPMIDRLGQDCP-VALAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P R +PL +L++A Y +++ + I EY MLDGVND+ +HA QL +L
Sbjct: 224 PNDELRDHLVPLNRKYPLAELLDACNRYLEHAPRDFITFEYCMLDGVNDQPEHAQQLIEL 283
Query: 119 LETF-----QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ +NLIPFNP S S + VS+F + L + I TTVRK G DI
Sbjct: 284 VRGHAGRGVSCKLNLIPFNPFPQ-SGLTRSPNKAVSAFAEKLINA-GIVTTVRKTRGDDI 341
Query: 174 SGACGQLVVNLPDK 187
ACGQL ++ D+
Sbjct: 342 DAACGQLAGDVRDR 355
>gi|336171591|ref|YP_004578729.1| ribosomal RNA large subunit methyltransferase N [Lacinutrix sp.
5H-3-7-4]
gi|334726163|gb|AEH00301.1| Ribosomal RNA large subunit methyltransferase N [Lacinutrix sp.
5H-3-7-4]
Length = 346
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 107/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +++A+ +I + +SPKRI VST G+ I K D NLAVSLH+
Sbjct: 164 MGEPLMNYNNVIKAIDKITSPEGLGMSPKRIVVSTSGVPKMIKKMADDAVKFNLAVSLHS 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ +VR +IMP + FPL L AL+ + + +Q+KI EY++ DG+ND + + L K
Sbjct: 224 AIDEVRTEIMPFNKTFPLNDLKEALEYWYEKTQRKITYEYVVWDGINDRREDINALVKFC 283
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ +N+I +NPI QF+ +S + ++ + L S NI VR+ G+DI ACGQ
Sbjct: 284 KYVPCKINIIEYNPIDD-GQFQQASSKAIDNYIQALE-SNNIVVNVRRSRGKDIDAACGQ 341
Query: 180 L 180
L
Sbjct: 342 L 342
>gi|239826567|ref|YP_002949191.1| ribosomal RNA large subunit methyltransferase N [Geobacillus sp.
WCH70]
gi|239806860|gb|ACS23925.1| radical SAM enzyme, Cfr family [Geobacillus sp. WCH70]
Length = 364
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L++ ++I+ + + ITVST GI+ I +F + +N A+SLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHSKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R ++MP +A+PL KLM+A++ Y + + +++ EY + GVND+ +HA QL +L+
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGRRVTFEYGLFGGVNDQIEHAEQLAELI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP N + + RT D++ +F++ L+ + I T+R++ G DI ACGQ
Sbjct: 296 KGLKCHVNLIPVNYVPERNYVRTPR-DQIFAFERALK-KHGINVTIRREHGHDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|398805477|ref|ZP_10564450.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
gi|398091513|gb|EJL81954.1| 23S rRNA, methyltransferase [Polaromonas sp. CF318]
Length = 382
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 114/194 (58%), Gaps = 10/194 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY LV A+++M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYGQLVPALKVMLDDHGYGLSRRRVTVSTSGVVPMIDRLAGDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +P+ +L+ A YQ ++ + I EY MLDGVND+ HA QL L
Sbjct: 223 PEDALRDNLVPLNKKYPIAELLEACTRYQASAPRDFITFEYCMLDGVNDQPAHARQLVAL 282
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
++ NLIPFNP S + S +V++F KIL + I TTVRK G DI
Sbjct: 283 VQAHAARGLSCKFNLIPFNPF-PASGLKRSDMPQVAAFAKILMDA-GIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDK 187
ACGQL ++ D+
Sbjct: 341 DAACGQLAGDVQDR 354
>gi|423070850|ref|ZP_17059626.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius F0413]
gi|355364944|gb|EHG12671.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
intermedius F0413]
Length = 360
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ VR + GL + + ITVST G+ H I F ++ +NLAVSL
Sbjct: 162 IGEPFDNYDNVLKFVRTVNDDKGLA--IGARHITVSTSGLAHKIRDFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +
Sbjct: 220 HAPNNNLRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNKVNDGVEQALELAE 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI
Sbjct: 280 LLKNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 339 ACGQLRSN 346
>gi|441500899|ref|ZP_20983045.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
gi|441435297|gb|ELR68695.1| Ribosomal RNA large subunit methyltransferase N [Fulvivirga
imtechensis AK7]
Length = 348
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 110/183 (60%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL NY ++EA+ +T GL +SPKRIT+STVGI I K D NLAVSL
Sbjct: 166 MGEPLLNYGNVIEAIEKITKPEGLG--MSPKRITLSTVGIPKMIKKLADDEVKFNLAVSL 223
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H+ + + R ++MP PLE L +ALK + ++ K+ EY++ GVND+E+ A L K
Sbjct: 224 HSGINETRSKVMPINEKNPLEDLADALKYWYHKTKSKVTYEYVVWRGVNDKERDADALVK 283
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ VNLI +NPI +F+ +S+D ++ + + L + +I VR+ G+DI AC
Sbjct: 284 FCKIIPSKVNLIEYNPIDE-GEFQQASEDALNMYIQKLEAA-DIVVKVRRSRGKDIDAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|374314275|ref|YP_005060704.1| 2-vinyl bacteriochlorophyllide hydratase [Serratia symbiotica str.
'Cinara cedri']
gi|363988501|gb|AEW44692.1| 23S rRNA m2A2503 methyltransferase [Serratia symbiotica str.
'Cinara cedri']
Length = 377
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A++IM F +S +RIT+ST G+V A++K SD+ + LA+SLHA
Sbjct: 171 MGEPLLNLKNVVSAIKIMQDDFGFGLSKRRITLSTSGVVPALDKL-SDMIDVALAISLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +E ++ A++ Y K +Q ++ IEY+ML+ VND + AHQL
Sbjct: 230 PNNKIRNEIVPMNSKYNIESVLAAVRRYLAKSKANQGRVTIEYVMLEYVNDSTKDAHQLA 289
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L++ +NLIP+N + + S++ +V SF K+L Y T +R+ G DI A
Sbjct: 290 EILKSTPCKINLIPWNAFPG-APYSRSANSRVDSFMKVLM-KYGFTTIIRRTRGADIDAA 347
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 348 CGQLVGEVIDR 358
>gi|257465082|ref|ZP_05629453.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
gi|257450742|gb|EEV24785.1| hypothetical protein AM202_01135 [Actinobacillus minor 202]
Length = 386
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM + +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 180 MGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKI-DVALAISLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E L+N++ +Y + S K+ IEY+MLD +NDE HAHQL
Sbjct: 239 PNDEIRDEIVPINKKYNIEMLINSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQLA 298
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIP+NP + + SS+ ++ FQK L Y T+RK G DI A
Sbjct: 299 KVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKALM-EYGFTVTIRKTRGDDIDAA 356
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 357 CGQLAGDVIDR 367
>gi|167569729|ref|ZP_02362603.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
C6786]
Length = 378
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V ++K ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R PL +LM A + Y K + + I EY MLDGVND E HA +L L
Sbjct: 234 PNDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S D++ F ++L + + TT+RK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLVR-SKPDQIKRFAQVLIDA-GVVTTIRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|322388131|ref|ZP_08061736.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
gi|419842764|ref|ZP_14366100.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis ATCC
700779]
gi|321141038|gb|EFX36538.1| cfr family radical SAM enzyme [Streptococcus infantis ATCC 700779]
gi|385703520|gb|EIG40634.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis ATCC
700779]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I +F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAEV 359
>gi|293365659|ref|ZP_06612368.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
gi|291316027|gb|EFE56471.1| cfr family radical SAM enzyme [Streptococcus oralis ATCC 35037]
Length = 349
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 114/200 (57%), Gaps = 4/200 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 150 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 209
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 210 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 269
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 270 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 328
Query: 178 GQLVVNLPDKISAKSTPPVT 197
GQL N + K+ V
Sbjct: 329 GQLRSNTMKRDRQKAVAAVN 348
>gi|162453111|ref|YP_001615478.1| radical SAM superfamily protein [Sorangium cellulosum So ce56]
gi|205829655|sp|A9FFJ6.1|RLMN_SORC5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161163693|emb|CAN94998.1| Radical SAM superfamily protein [Sorangium cellulosum So ce56]
Length = 389
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 116/187 (62%), Gaps = 10/187 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPG-LNLAVS 56
MGEPL+NY A ++R++T G+ +S +R+TVST G+V I + +D G + LA+S
Sbjct: 196 MGEPLHNYEATARSLRLLTHPEGI--NLSTRRVTVSTSGLVPEIARLGADFGGQIALAIS 253
Query: 57 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
LHA + R +MP R PL++L+ AL+ Y +++I IEY ++ G ND+ A +L
Sbjct: 254 LHAADDETRSALMPINRKHPLDELLAALRAYPLPRRRRITIEYTLVAGQNDDPAEARRLA 313
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISG 175
KLL V +NLIP NPI S + ++V++FQ++L + Y+ VR++ G D+S
Sbjct: 314 KLLRGLPVKINLIPMNPI-EASSLGPPAQERVAAFQEVLTQAGYS--CFVRRRRGDDVSA 370
Query: 176 ACGQLVV 182
ACGQLV+
Sbjct: 371 ACGQLVL 377
>gi|119775502|ref|YP_928242.1| ribosomal RNA large subunit methyltransferase N [Shewanella
amazonensis SB2B]
gi|205829877|sp|A1S866.1|RLMN_SHEAM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|119768002|gb|ABM00573.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 373
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM F +S +R+T+ST G+V A++K D+ + LAVS+HA
Sbjct: 167 MGEPLLNLANVVPAMNIMLDDYGFGLSKRRVTLSTSGVVPALDKL-GDVIDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + A++ Y + S + ++ +EY+MLD +ND AH+L
Sbjct: 226 PNDELRDVLVPINKKYPLQEFLAAIRRYLEKSNANRGRVTLEYVMLDHINDSTDQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ +NLIPFNP S + SS+ ++ F K+L Y++ VRK G DI A
Sbjct: 286 KLMKDTPCKINLIPFNPYPG-SPYGRSSNSRIDRFAKVLM-EYDLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|421855029|ref|ZP_16287411.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403189529|dbj|GAB73612.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 411
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 121/193 (62%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMHIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDID-VALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVND +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ +LL+ +NLIPFNP R SS +++ +FQK L + + T+R+ G DI
Sbjct: 319 MIRLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKALSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|335029275|ref|ZP_08522783.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK1076]
gi|334269088|gb|EGL87517.1| 23S rRNA m2A2503 methyltransferase [Streptococcus infantis SK1076]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAEV 359
>gi|209521129|ref|ZP_03269857.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
gi|209498439|gb|EDZ98566.1| radical SAM enzyme, Cfr family [Burkholderia sp. H160]
Length = 383
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 179 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y K + + I EY MLDGVND E HA QL +
Sbjct: 238 PNDALRDELVPLNKKYPLRELMAACERYLKVAPRDFITFEYCMLDGVNDSEAHARQLLAV 297
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 298 TRDVPCKFNLIPFNPFPESGLIR-SKQEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACG 355
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 356 QLAGAVKDR 364
>gi|423200200|ref|ZP_17186780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
gi|404620171|gb|EKB17070.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER39]
Length = 367
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+R+M F +S +R+T+ST G+V A++K D + LA+SLHA
Sbjct: 161 MGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKL-GDQIDVALAISLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E+ + ++ Y S ++ +EY++LD +ND+ QHAH+L
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI A
Sbjct: 280 KVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 337
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 338 CGQLVGDVIDR 348
>gi|424776103|ref|ZP_18203088.1| radical SAM superfamily protein 2 [Alcaligenes sp. HPC1271]
gi|422888563|gb|EKU30949.1| radical SAM superfamily protein 2 [Alcaligenes sp. HPC1271]
Length = 382
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 7/198 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 177 MGEPLLNYDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLAKDCP-VALAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +L++A Y +++ + I EYIMLDG+ND +QHA +L +
Sbjct: 236 PNDALRDRLVPLNKKYPLAELLDACNRYLEHAPRDFITFEYIMLDGINDTDQHAQELLDI 295
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGAC 177
+ NLIPFNP S + SS +V F Q+++ G + TTVRK G DI+ AC
Sbjct: 296 ARIVRCKFNLIPFNPFPQ-SGLKRSSAARVKQFAQRLMDGG--VVTTVRKTRGDDIAAAC 352
Query: 178 GQLVVNLPDKISAKSTPP 195
GQL ++ D+ + P
Sbjct: 353 GQLAGDIRDRTRIEQRLP 370
>gi|414158682|ref|ZP_11414975.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0441]
gi|421488597|ref|ZP_15935985.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK304]
gi|400367814|gb|EJP20829.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK304]
gi|410869337|gb|EKS17299.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
F0441]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|421277672|ref|ZP_15728490.1| 23S rRNA methyltransferase [Streptococcus mitis SPAR10]
gi|395874403|gb|EJG85487.1| 23S rRNA methyltransferase [Streptococcus mitis SPAR10]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I +F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAEV 359
>gi|402572536|ref|YP_006621879.1| 2-vinyl bacteriochlorophyllide hydratase [Desulfosporosinus
meridiei DSM 13257]
gi|402253733|gb|AFQ44008.1| 23S rRNA m2A2503 methyltransferase [Desulfosporosinus meridiei DSM
13257]
Length = 354
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 115/183 (62%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++A+RI+ P R IT+ST G+ I +F +NLA+SLHA
Sbjct: 163 IGEPFDNYINVMDALRIIIDHKGLAIPGRGITISTSGLADKIYEFADSDLKVNLAISLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R QIM R +PLEK++ A++ Y +++++ +EYI+L +ND+ +HA QL L+
Sbjct: 223 PTNELREQIMKINRVYPLEKIIPAVEYYLAKTKRRVTLEYILLKDLNDQREHALQLASLI 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ Q + +NLIP+NP+ Q++ S + + +F +L+ + I ++R + G+DI AC
Sbjct: 283 KNIQQLININLIPYNPVDEHPQYQRSDHETMLAFYDVLK-KHGINCSIRLEHGRDIEAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|333369698|ref|ZP_08461804.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
gi|332970237|gb|EGK09230.1| cfr family radical SAM enzyme [Psychrobacter sp. 1501(2011)]
Length = 403
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 119/192 (61%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M + + +S +R+T+ST G+V + + D+ + LA+SLHA
Sbjct: 194 MGEPLLNYKPVVSSMSLMLSDHAYGLSKRRVTLSTSGVVPKMYDLYKDI-DVALAISLHA 252
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS----QQKIFIEYIMLDGVNDEEQHAHQL 115
P ++R +++P + +PL +L+ A K Y ++ ++ + IEY+ML GVND ++HAHQL
Sbjct: 253 PNDELRNELVPINKKYPLSELIAAAKAYVHDNNPRHKKHVTIEYVMLAGVNDSDEHAHQL 312
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LLE +NLIPFNP + + SS++++ +F IL + T+R+ G DI
Sbjct: 313 VALLEGLPSKINLIPFNPFPH-APYDRSSNNRIHAFSNILNNA-GFVCTIRQTRGDDIDA 370
Query: 176 ACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 371 ACGQLVGQVADR 382
>gi|307703606|ref|ZP_07640548.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
gi|331266156|ref|YP_004325786.1| Radical SAM superfamily Fe-S-cluster redox protein [Streptococcus
oralis Uo5]
gi|417793879|ref|ZP_12441146.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK255]
gi|417924708|ref|ZP_12568143.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK569]
gi|417941068|ref|ZP_12584355.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK313]
gi|419767060|ref|ZP_14293228.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK579]
gi|419779250|ref|ZP_14305126.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK10]
gi|419782343|ref|ZP_14308152.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK610]
gi|419813893|ref|ZP_14338702.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD2S]
gi|307623013|gb|EFO02008.1| UPF0063 protein yfgB [Streptococcus oralis ATCC 35037]
gi|326682828|emb|CBZ00445.1| Radical SAM superfamily, predicted Fe-S-cluster redox enzyme
[Streptococcus oralis Uo5]
gi|334271735|gb|EGL90117.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK255]
gi|342835639|gb|EGU69874.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK569]
gi|343388361|gb|EGV00947.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK313]
gi|383183447|gb|EIC75984.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK610]
gi|383186278|gb|EIC78748.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK10]
gi|383353446|gb|EID31058.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK579]
gi|404472494|gb|EKA16917.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD2S]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|37525329|ref|NP_928673.1| hypothetical protein plu1373 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81419944|sp|Q7N709.1|RLMN_PHOLL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|36784756|emb|CAE13666.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 392
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P DVR I+P R + +E+ + ++ Y S Q ++ +EY+MLD +ND + AHQL
Sbjct: 245 PTDDVRDDIVPINRKYNIEQFLAGVRRYLTKSNANQGRVTVEYVMLDHINDSVEQAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 305 ECLKETPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 363 CGQLAGDVIDR 373
>gi|444377292|ref|ZP_21176524.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
gi|443678582|gb|ELT85250.1| Ribosomal RNA large subunit methyltransferase N [Enterovibrio sp.
AK16]
Length = 373
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ +M L + +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALNLMLDDLAYGLSKRRVTVSTSGVVSGLDQMAGKI-DVALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +E + +++ Y +S + ++ +EYI+LD VND+ +HA QL
Sbjct: 226 PTDELRSQIMPINDRYDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y+ VRK G DI A
Sbjct: 286 ELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYDYTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|330830071|ref|YP_004393023.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|406676649|ref|ZP_11083834.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
gi|423206308|ref|ZP_17192864.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|423209225|ref|ZP_17195779.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|328805207|gb|AEB50406.1| Ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
B565]
gi|404617083|gb|EKB14019.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AER397]
gi|404621860|gb|EKB18725.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC34]
gi|404624963|gb|EKB21780.1| ribosomal RNA large subunit methyltransferase N [Aeromonas veronii
AMC35]
Length = 367
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+R+M F +S +R+T+ST G+V A++K D + LA+SLHA
Sbjct: 161 MGEPLLNLANVVPAMRLMMDDYGFGISKRRVTISTSGVVPALDKL-GDQIDVALAISLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E+ + ++ Y S ++ +EY++LD +ND+ QHAH+L
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI A
Sbjct: 280 KVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 337
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 338 CGQLVGDVIDR 348
>gi|387773831|ref|ZP_10129116.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
gi|386903652|gb|EIJ68459.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parahaemolyticus
HK385]
Length = 386
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM + +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 180 MGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDALR-DKIDVALAISLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E L++++ Y + S K+ IEY+MLD VNDE HAHQL
Sbjct: 239 PNDEIRDEIVPINKKYNMEMLIDSVNRYLEVSNANHGKVTIEYVMLDHVNDEVDHAHQLA 298
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIP+NP + + SS+ +V FQK L Y T+RK G DI A
Sbjct: 299 KVLKNTPCKINLIPWNPFPE-APYAKSSNSRVDRFQKALM-EYGFTVTIRKTRGDDIDAA 356
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 357 CGQLAGDVIDR 367
>gi|358067540|ref|ZP_09154018.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
gi|356694193|gb|EHI55856.1| cfr family radical SAM enzyme [Johnsonella ignava ATCC 51276]
Length = 344
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 115/189 (60%), Gaps = 3/189 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP++NY +V V +++ + +S + IT+ST GIV I K + + LA+SLHA
Sbjct: 157 VGEPMDNYENIVSFVHMISDIHGLNISQRNITISTCGIVPQIKKLADEKLSVTLALSLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P R ++MP A + + ++++A Y K + +++ EY ++ GVND +Q A++L KL+
Sbjct: 217 PDNITRKRLMPVAEIYDINEVLDACSYYFKKTGRRVSFEYALVAGVNDSKQEAYKLIKLI 276
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP NPI Q+R S K F+ +L + I TT+R++MG+DI GACGQ
Sbjct: 277 KNQKAHVNLIPVNPIEE-RQYRQSDKKKAEDFKNLLLKA-GINTTIRREMGRDIDGACGQ 334
Query: 180 LVVNLPDKI 188
L + D I
Sbjct: 335 LRRHYEDGI 343
>gi|330790726|ref|XP_003283447.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
gi|325086712|gb|EGC40098.1| hypothetical protein DICPUDRAFT_25816 [Dictyostelium purpureum]
Length = 390
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 115/182 (63%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY + +A+ I+T GL + +ITVST G+V I + +D PG+ LA+SLH
Sbjct: 211 GEPFYNYRNVKKAISIITDSNGLA--IGKSKITVSTSGVVPIIERLGTDFPGIGLAISLH 268
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+P +VR +I+ A R +P+E+L+ + ++ K ++ +I +EY+ L V+D EQ A L L
Sbjct: 269 SPNDEVRSKIVTANRQWPIEELVQSCIKFSKTTKSRITLEYVPLQDVHDTEQDALDLIPL 328
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ F +VN+IPFNP S +S+++++ F IL S N++TT+R+ G+DI ACG
Sbjct: 329 CKRFPSLVNIIPFNPWPG-SPHESSTNNQIQIFANILE-SNNVKTTIRQSRGRDIMAACG 386
Query: 179 QL 180
QL
Sbjct: 387 QL 388
>gi|307704572|ref|ZP_07641477.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
gi|307621869|gb|EFO00901.1| UPF0063 protein yfgB [Streptococcus mitis SK597]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLTFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|386834961|ref|YP_006240278.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
gi|385201664|gb|AFI46519.1| radical SAM enzyme, Cfr family [Pasteurella multocida subsp.
multocida str. 3480]
Length = 394
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LA+SLHA
Sbjct: 188 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAISLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM+++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 247 PNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLA 306
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK G DI A
Sbjct: 307 QVLKNIPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 364
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 365 CGQLAGDVIDR 375
>gi|406576653|ref|ZP_11052280.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD6S]
gi|419817895|ref|ZP_14342028.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD4S]
gi|404461200|gb|EKA07177.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD6S]
gi|404465322|gb|EKA10784.1| ribosomal RNA large subunit methyltransferase N [Streptococcus sp.
GMD4S]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|322375441|ref|ZP_08049954.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
gi|321279704|gb|EFX56744.1| radical SAM enzyme, Cfr family [Streptococcus sp. C300]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIEKTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|238758832|ref|ZP_04620005.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
gi|238702940|gb|EEP95484.1| Ribosomal RNA large subunit methyltransferase N [Yersinia aldovae
ATCC 35236]
Length = 398
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R I+P R + +E + A++ Y S+ ++ +EY+MLD +ND + AHQL
Sbjct: 251 PTDDIRDDIVPINRKYNIETFLAAVRRYLAKSKANGGRVTVEYVMLDHINDSTEQAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ACLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|451936487|ref|YP_007460341.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777410|gb|AGF48385.1| ribosomal RNA large subunit methyltransferase N [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 379
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 116/188 (61%), Gaps = 5/188 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++++++++ + + S ++ITVST GIV I+K D P ++LAVSLHA
Sbjct: 182 MGEPLLNYKQVIKSIKLLLDVNAYGFSRRKITVSTSGIVPMIDKLARDCP-VSLAVSLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
D+R +++P + +PL +L+ + K Y ++ + I EY ML GVND ++H +L L
Sbjct: 241 ANDDLRNKLVPINKKYPLNELIESCKRYITRSPRDFITFEYCMLSGVNDTDKHIKELINL 300
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ + +NLIPFN S S FR + +K++SF L S I TTVRK G DI ACG
Sbjct: 301 VSQIKCKINLIPFNSFES-SDFRAPTIEKINSFANKLLNS-GIMTTVRKTRGDDIHAACG 358
Query: 179 QLVVNLPD 186
QL N+ +
Sbjct: 359 QLAGNVKN 366
>gi|424780017|ref|ZP_18206902.1| Ribosomal RNA large subunit methyltransferase N [Catellicoccus
marimammalium M35/04/3]
gi|422843349|gb|EKU27787.1| Ribosomal RNA large subunit methyltransferase N [Catellicoccus
marimammalium M35/04/3]
Length = 351
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 114/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST GIV I +F + +NLA+SL
Sbjct: 162 IGEPFDNYDNVMTFLRVVNDDKGLA--IGARHITVSTCGIVPKIRQFTKEGLQVNLALSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RAF LE +M+AL +Y + +++ EYIM+ VND+++HA +L +
Sbjct: 220 HAPNDEIRTKIMKINRAFKLEDVMDALFDYMDETNRRVTFEYIMIHNVNDQKEHAKELVE 279
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + VNLIP+NP+ ++ S D + +F IL+ + I +R++ G DI
Sbjct: 280 LLKDHKKLCYVNLIPYNPVNEHVDYQRSELDDILAFYDILKKN-GINCVIRQEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|262276957|ref|ZP_06054750.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
gi|262224060|gb|EEY74519.1| radical SAM enzyme, Cfr family [alpha proteobacterium HIMB114]
Length = 357
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 116/183 (63%), Gaps = 8/183 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP N+ + ++V I+ GL F S K+ITVST GI I K +++ G LA+SL
Sbjct: 166 MGEPFYNFENIKKSVEILKDENGLNF--SNKKITVSTSGISPNIKKAANEI-GTYLALSL 222
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IMP + + +E ++ +Y K + +KIFIEY++L VND EQ A +L K
Sbjct: 223 HAPNNEIRNEIMPINKKYNIENIIEHCSQYAKENGEKIFIEYVLLKDVNDTEQCAKELSK 282
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
++ F +NLI FNP V +++T++ ++ S F +I++ + ++ T+RK G DI GAC
Sbjct: 283 IMSQFPCKLNLIQFNPWPGV-KYKTATKEQTSKFIEIIKKNGHV-VTLRKSRGDDILGAC 340
Query: 178 GQL 180
GQL
Sbjct: 341 GQL 343
>gi|269837848|ref|YP_003320076.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
20745]
gi|269787111|gb|ACZ39254.1| radical SAM enzyme, Cfr family [Sphaerobacter thermophilus DSM
20745]
Length = 347
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 110/183 (60%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP NY A + VRI+ G+ F +RITVST G+V I++ + + LAVSL
Sbjct: 159 MGEPFQNYEATMRMVRILHEEEGMNF--GARRITVSTSGLVPFIDRLAREPFQVKLAVSL 216
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R ++P R +P+ +L+ A + Y + +++ EY+++DGVND + +A +L +
Sbjct: 217 HAPNDDLRSSLVPLNRRYPIGELIAACRRYVGETGRRVTFEYVLIDGVNDSDANAEELAR 276
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIP NP + F S ++++ F++ILR + I TVR G DIS AC
Sbjct: 277 LLRGLLCHVNLIPLNPT-PAAPFGRPSVERINRFEQILR-ARGIPATVRYSRGVDISAAC 334
Query: 178 GQL 180
GQL
Sbjct: 335 GQL 337
>gi|401684850|ref|ZP_10816724.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. BS35b]
gi|400184363|gb|EJO18607.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. BS35b]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNVKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|315613373|ref|ZP_07888282.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
gi|315314608|gb|EFU62651.1| cfr family radical SAM enzyme [Streptococcus sanguinis ATCC 49296]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|307706322|ref|ZP_07643134.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
gi|307708956|ref|ZP_07645416.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
gi|417847060|ref|ZP_12493031.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1073]
gi|417849607|ref|ZP_12495526.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1080]
gi|418967600|ref|ZP_13519256.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK616]
gi|418976331|ref|ZP_13524211.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK575]
gi|307618240|gb|EFN97395.1| UPF0063 protein yfgB [Streptococcus mitis SK321]
gi|307620292|gb|EFN99408.1| UPF0063 protein yfgB [Streptococcus mitis SK564]
gi|339455903|gb|EGP68500.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1080]
gi|339457335|gb|EGP69909.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK1073]
gi|383343344|gb|EID21529.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK616]
gi|383351634|gb|EID29413.1| 23S rRNA m2A2503 methyltransferase [Streptococcus mitis SK575]
Length = 361
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|393757562|ref|ZP_10346386.1| radical SAM superfamily protein 2 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393165254|gb|EJC65303.1| radical SAM superfamily protein 2 [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 382
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 120/198 (60%), Gaps = 7/198 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 177 MGEPLLNYDQVLGALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLAQDCP-VALAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +L++A Y +++ + I EYIMLDG+ND +QHA +L +
Sbjct: 236 PNDALRDRLVPLNKKYPLAELLDACNRYLEHAPRDFITFEYIMLDGINDTDQHAQELLDI 295
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGAC 177
+ NLIPFNP S + SS +V F Q+++ G + TTVRK G DI+ AC
Sbjct: 296 ARIVRCKFNLIPFNPFPQ-SGLKRSSAARVKQFAQRLMDG--GVVTTVRKTRGDDIAAAC 352
Query: 178 GQLVVNLPDKISAKSTPP 195
GQL ++ D+ + P
Sbjct: 353 GQLAGDIRDRTRIEQRLP 370
>gi|145589473|ref|YP_001156070.1| radical SAM protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|205829801|sp|A4SYE2.1|RLMN_POLSQ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|145047879|gb|ABP34506.1| 23S rRNA m(2)A-2503 methyltransferase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 402
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 116/193 (60%), Gaps = 5/193 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 181 MGEPLLNYDNVVSALRLMLDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCP-VALAVSLHA 239
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P + +PL +L++A + Y + + EY MLDGVND + A +L +L
Sbjct: 240 PNDALRDQLVPLNQKYPLRELLDACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRL 299
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L + +NLIPFNP S + SS +V++F IL + + TVRK G DI+ ACG
Sbjct: 300 LRNIKCKINLIPFNPFPE-SGLKRSSAQRVNAFAGILLDAGMV-ATVRKTRGDDIAAACG 357
Query: 179 QLVVNLPDKISAK 191
QL ++ D+ +
Sbjct: 358 QLAGDVVDRTRVR 370
>gi|365540822|ref|ZP_09365997.1| ribosomal RNA large subunit methyltransferase N [Vibrio ordalii
ATCC 33509]
Length = 373
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y S + K+ +EY++LD VND+ +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWDIQDFLASVRRYIATSNANRGKVTVEYVLLDHVNDDMEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK G DI A
Sbjct: 286 KLMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|417852143|ref|ZP_12497780.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
gi|338217648|gb|EGP03496.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida str. Anand1_poultry]
Length = 394
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LAVSLHA
Sbjct: 188 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAVSLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM+++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 247 PNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLA 306
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK G DI A
Sbjct: 307 QVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 364
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 365 CGQLAGDVIDR 375
>gi|307708474|ref|ZP_07644939.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
gi|307615390|gb|EFN94598.1| radical SAM enzyme, Cfr family [Streptococcus mitis NCTC 12261]
Length = 361
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|124267188|ref|YP_001021192.1| hypothetical protein Mpe_A1999 [Methylibium petroleiphilum PM1]
gi|205829632|sp|A2SHB8.1|RLMN_METPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|124259963|gb|ABM94957.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 394
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 11/200 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYAAL+ A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 165 MGEPLQNYAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLREDCP-VALAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+ +L+ A + Y + + + I EY MLDGVND E A +L +L
Sbjct: 224 PTDALRDDLVPLNRKYPIAELLEACQRYLEAAPRDFITFEYCMLDGVNDSEAQARELLRL 283
Query: 119 LETFQVV------VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 172
+ V +NLIPFNP S SS +V +F ++L + TTVR+ G D
Sbjct: 284 VGERGPVGRVPCKINLIPFNPF-PASGLTRSSVARVQAFAQLLVDG-GLVTTVRRTRGDD 341
Query: 173 ISGACGQLVVNLPDKISAKS 192
I ACGQL + D+ +A++
Sbjct: 342 IDAACGQLAGEVQDRTNAQA 361
>gi|146329686|ref|YP_001209425.1| hypothetical protein DNO_0514 [Dichelobacter nodosus VCS1703A]
gi|205829748|sp|A5EVN1.1|RLMN_DICNV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146233156|gb|ABQ14134.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
Length = 364
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 118/191 (61%), Gaps = 6/191 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++ A I M+ F +S +R+T+ST G+V AI+K ++ L+LAVSLHA
Sbjct: 166 MGEPLINFNQVLPATEIFMSDWGFGLSKRRVTLSTSGVVPAIHKLR-EVTDLSLAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P ++R +I+P + + L+ L+ A Y +N++Q I EY+ML GVND +HA QL
Sbjct: 225 PNDELRNKIVPINQRYGLKALIEACALYAENNKQHGGITWEYVMLKGVNDTLEHAQQLAD 284
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFN + S F+ SS + + FQ+ L+ + I T+RK G DI AC
Sbjct: 285 LLRNVPGKINLIPFNEFPN-SPFQCSSWEDIVRFQQFLQKAGYI-ATIRKTRGDDIDAAC 342
Query: 178 GQLVVNLPDKI 188
GQLV + D+I
Sbjct: 343 GQLVGRVNDRI 353
>gi|392329641|ref|ZP_10274257.1| radical SAM superfamily protein [Streptococcus canis FSL Z3-227]
gi|391419513|gb|EIQ82324.1| radical SAM superfamily protein [Streptococcus canis FSL Z3-227]
Length = 359
Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 114/192 (59%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYQNVMTFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+F LEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNDLRSSIMRINRSFSLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGIEQAQELAD 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S ++VS+F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKERVSAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDK 187
ACGQL N K
Sbjct: 339 ACGQLRSNTMKK 350
>gi|348028465|ref|YP_004871151.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
gi|347945808|gb|AEP29158.1| ribosomal RNA large subunit methyltransferase N [Glaciecola
nitratireducens FR1064]
Length = 393
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+RIM F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 186 MGEPLLNLKNVVPAMRIMLDDYGFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +P+E+ + ++ Y K +Q K+ +EY+ML+ +ND AH L
Sbjct: 245 PDDKLRDEIVPVNKKYPIEEFLAGVRRYLAKSKANQGKVTVEYVMLNHINDSTDQAHALA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L +NLIPFNP S + SS+ ++ F K+L YN +RK G DI A
Sbjct: 305 KVLADTPCKINLIPFNPYPG-SPYTCSSNSRMDRFSKVLM-DYNFTVVIRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 363 CGQLVGDVVDR 373
>gi|392532134|ref|ZP_10279271.1| ribosomal RNA large subunit methyltransferase N [Carnobacterium
maltaromaticum ATCC 35586]
gi|414085179|ref|YP_006993890.1| radical SAM superfamily protein [Carnobacterium maltaromaticum
LMA28]
gi|412998766|emb|CCO12575.1| radical SAM superfamily protein [Carnobacterium maltaromaticum
LMA28]
Length = 355
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +RI+ + + ITVST G+ I +F + +NLA+SLHA
Sbjct: 162 IGEPFDNYDNVMSFLRIVNNEKGLSIGARHITVSTSGLAPKIKEFAENGLQVNLAISLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM R FP+EKLM+A+ Y + + ++I EYIML GVND+++ A +L KLL
Sbjct: 222 PNNEIRTSIMRINRNFPIEKLMDAVDYYLEKTNRRITFEYIMLRGVNDQKEQALELAKLL 281
Query: 120 --ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ VNLIP+N + Q+ S V +F L+ I + VRK+ G DI AC
Sbjct: 282 ADKRHLAYVNLIPYNAVSEHDQYSRSKKADVLAFHDTLKKK-GINSVVRKEQGSDIDAAC 340
Query: 178 GQL 180
GQL
Sbjct: 341 GQL 343
>gi|419706783|ref|ZP_14234293.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
salivarius PS4]
gi|383283505|gb|EIC81459.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
salivarius PS4]
Length = 369
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 165 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 222
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 223 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 282
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ S+ ++V++F +L+ + + VR++ G DI
Sbjct: 283 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 341
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 342 ACGQLRSN 349
>gi|283769598|ref|ZP_06342494.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
gi|283103866|gb|EFC05252.1| radical SAM enzyme, Cfr family [Bulleidia extructa W1219]
Length = 348
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 108/181 (59%), Gaps = 5/181 (2%)
Query: 2 GEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY ++ + + + + IT+ST GIV I +F NLA+SLHAP
Sbjct: 160 GEPFDNYDHVLGFCKTANQDIGLGIGARHITISTCGIVPKIREFSKSHYQYNLAISLHAP 219
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
Q++R ++MP +PL +LM++LKEY +++ ++I EYI+L GVND +QHA +L L+
Sbjct: 220 NQELRDKLMPINHRYPLSELMDSLKEYSESNHRRITFEYILLHGVNDSDQHAIELAHLIR 279
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVS-SFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VNLIP+N + S+DDK + F +L + ++ T+R++ G DI ACGQ
Sbjct: 280 GMNAYVNLIPYNKVDEKGY--ESTDDKTALHFYDVLM-KHGVKATLRQKHGDDIDAACGQ 336
Query: 180 L 180
L
Sbjct: 337 L 337
>gi|255321140|ref|ZP_05362306.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262380171|ref|ZP_06073326.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|421464220|ref|ZP_15912910.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
gi|255301694|gb|EET80945.1| radical SAM enzyme, Cfr family [Acinetobacter radioresistens SK82]
gi|262298365|gb|EEY86279.1| ribosomal RNA large subunit methyltransferase N [Acinetobacter
radioresistens SH164]
gi|400204973|gb|EJO35954.1| 23S rRNA m2A2503 methyltransferase [Acinetobacter radioresistens
WC-A-157]
Length = 411
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 121/193 (62%), Gaps = 9/193 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A++ ++ IM + +S +R+T+ST G+V I++ D+ + LA+SLHA
Sbjct: 200 MGEPLLNYDAVLSSMYIMLDDFAYGMSKRRVTLSTSGVVPKIDQLAQDID-VALAISLHA 258
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-----QKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
P ++R +++P + +PL +L+ A + Y +++++ + IEY+MLDGVND +HA Q
Sbjct: 259 PNDELRNELVPINKKYPLAQLIAACQRYINKDGNESARKHVTIEYVMLDGVNDSLEHAQQ 318
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ +LL+ +NLIPFNP R SS +++ +FQK L + + T+R+ G DI
Sbjct: 319 MIRLLKNLPSKINLIPFNPFPHAPYGR-SSRNRIIAFQKALSDAGFV-CTIRQTRGDDID 376
Query: 175 GACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 377 AACGQLVGQVADR 389
>gi|119505391|ref|ZP_01627465.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
gi|119458846|gb|EAW39947.1| hypothetical protein MGP2080_14284 [marine gamma proteobacterium
HTCC2080]
Length = 388
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 121/191 (63%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +MT L + +S +++T+ST G+V A+++ ++ ++LAVSLHA
Sbjct: 178 MGEPLLNFDNVVSAMSLMTDDLAYGLSKRKVTLSTSGVVPALDRL-AEFSDVSLAVSLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P R +P+++L+ + K Y Q + ++ + IEY +L GVND+ +HA +L
Sbjct: 237 PNDEIRNKIVPINRRYPIQQLLQSAKSYIDAQSDRKRVVTIEYTLLAGVNDQPEHARELS 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ F +NLIPFN + S F S + VS F ++L + I TVR G DI A
Sbjct: 297 TLLKDFPCKINLIPFNHFPN-SGFDRPSGNAVSRFWQVLVDAGFI-VTVRSTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 355 CGQLVGEVVDR 365
>gi|71892305|ref|YP_278039.1| pyruvate formate lyase activating enzyme 2 [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123761466|sp|Q492D9.1|RLMN_BLOPB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71796411|gb|AAZ41162.1| putative pyruvate formate lyase activating enzyme 2 [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 373
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 11/195 (5%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHS--DLPGLNLAVSL 57
MGEPL N +V A+RI + F++S + IT+ST GIV I K + D+P LA+SL
Sbjct: 178 MGEPLLNIVNVVSAIRIILDDFGFKLSKRHITLSTAGIVPGIEKLKNMIDIP---LAISL 234
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIMLDGVNDEEQHAHQ 114
HAP +R +IMP + + + ++ A + Y K++ +I IEY++L +ND+ HAHQ
Sbjct: 235 HAPNDIIRNKIMPINKKYNINSVLEAARRYSMDTKSNHGRITIEYVLLKNINDDVLHAHQ 294
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L K L+ +NLIP+NPI ++ ++ SS ++ +F K+L YNI T +RK G DI+
Sbjct: 295 LAKQLQGIPCKINLIPWNPIPNI-RYACSSQIRMRAFLKVLL-KYNIVTIIRKIRGADIN 352
Query: 175 GACGQLVVNLPDKIS 189
ACGQL + ++I+
Sbjct: 353 AACGQLTGEVINRIN 367
>gi|221066031|ref|ZP_03542136.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
gi|220711054|gb|EED66422.1| radical SAM enzyme, Cfr family [Comamonas testosteroni KF-1]
Length = 373
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 118/197 (59%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHA
Sbjct: 164 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L
Sbjct: 223 PNDPLRDNLVPLNRKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIEL 282
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP + R+S+ +V+ F +L + I TTVRK G DI
Sbjct: 283 VRARGDGKSWCKFNLIPFNPFPASGLLRSSA-ARVTEFATMLSNA-GIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 341 DAACGQLAGDVKDRTRA 357
>gi|222110300|ref|YP_002552564.1| radical sam enzyme, cfr family [Acidovorax ebreus TPSY]
gi|221729744|gb|ACM32564.1| radical SAM enzyme, Cfr family [Acidovorax ebreus TPSY]
Length = 383
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 115/195 (58%), Gaps = 11/195 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYAALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 173 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCP-VALAVSLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +PL +L+ A + Y ++ + I EY ML+GVND+ +HA QL L
Sbjct: 232 PNDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDL 291
Query: 119 LET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 172
+ NLIPFNP S R S V++F ++L + I TTVRK G D
Sbjct: 292 VGRKAADGGVSCKFNLIPFNPF-PASGLRRSPPAAVTAFAQLLSDA-GIVTTVRKTRGDD 349
Query: 173 ISGACGQLVVNLPDK 187
I ACGQL ++ D+
Sbjct: 350 IDAACGQLAGDVKDR 364
>gi|312863236|ref|ZP_07723474.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
F0396]
gi|322516113|ref|ZP_08069048.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
49124]
gi|311100772|gb|EFQ58977.1| 23S rRNA m2A2503 methyltransferase [Streptococcus vestibularis
F0396]
gi|322125408|gb|EFX96758.1| cfr family radical SAM enzyme [Streptococcus vestibularis ATCC
49124]
Length = 389
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|261856771|ref|YP_003264054.1| Cfr family radical SAM protein [Halothiobacillus neapolitanus c2]
gi|261837240|gb|ACX97007.1| radical SAM enzyme, Cfr family [Halothiobacillus neapolitanus c2]
Length = 392
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++V+A IM + +S +R+T+ST GI+ AI++ LP + LA+SLHA
Sbjct: 183 MGEPLLNFESVVDAATIMLDDNAYGLSRRRVTISTSGIIPAIDRLAERLP-VALAISLHA 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL+ LM A Y K I EY+ML+GVNDE HA ++ +L
Sbjct: 242 PNDALRDVLVPINQKYPLDDLMAACDRYAKVVPHGAIIYEYVMLEGVNDEPVHAEEMIRL 301
Query: 119 LETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L + V VNLIPFNP S S ++ SS +++ F+ L+ + I T RK G DI A
Sbjct: 302 LAPRKDAVKVNLIPFNPFPS-SGYKRSSRNRIERFRATLKAA-GINTVPRKTRGDDIDAA 359
Query: 177 CGQLVVNLPDK 187
CGQLV DK
Sbjct: 360 CGQLVGEFEDK 370
>gi|228477270|ref|ZP_04061908.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
gi|340399559|ref|YP_004728584.1| putative Fe-S-cluster redox enzyme [Streptococcus salivarius
CCHSS3]
gi|387760630|ref|YP_006067607.1| radical SAM enzyme, Cfr family [Streptococcus salivarius 57.I]
gi|387784808|ref|YP_006070891.1| Fe-S-cluster redox enzyme [Streptococcus salivarius JIM8777]
gi|418018552|ref|ZP_12658108.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
salivarius M18]
gi|421453119|ref|ZP_15902475.1| 23S rRNA (adenine-C(2))-methyltransferase [Streptococcus salivarius
K12]
gi|228251289|gb|EEK10460.1| radical SAM enzyme, Cfr family [Streptococcus salivarius SK126]
gi|338743552|emb|CCB94062.1| putative Fe-S-cluster redox enzyme [Streptococcus salivarius
CCHSS3]
gi|338745690|emb|CCB96056.1| predicted Fe-S-cluster redox enzyme [Streptococcus salivarius
JIM8777]
gi|339291397|gb|AEJ52744.1| radical SAM enzyme, Cfr family [Streptococcus salivarius 57.I]
gi|345527401|gb|EGX30712.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
salivarius M18]
gi|400181428|gb|EJO15695.1| 23S rRNA (adenine-C(2))-methyltransferase [Streptococcus salivarius
K12]
Length = 389
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|88812659|ref|ZP_01127906.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
gi|88790075|gb|EAR21195.1| hypothetical protein NB231_00700 [Nitrococcus mobilis Nb-231]
Length = 378
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 117/183 (63%), Gaps = 5/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+A++++A +M + +S +R+T+ST GIV A+ + +++ ++LAVSLHA
Sbjct: 177 MGEPLANFASVLKASNLMVDEHAYNLSRRRVTLSTSGIVPALYRL-AEVSRISLAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +P+ +L+ A + Y + +I EY+MLD VND + HA L +L
Sbjct: 236 PDDALRDELVPINRKYPIAELLAACRNYVECTPHHRITWEYVMLDAVNDTDGHAQALARL 295
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ +NLIPFN + +R+S +V+ F +IL+ + I TTVRK G DI GACG
Sbjct: 296 LKGVPSKINLIPFNAFPG-APYRSSPPQRVARFTEILQRAGYI-TTVRKTRGDDIDGACG 353
Query: 179 QLV 181
QLV
Sbjct: 354 QLV 356
>gi|383453201|ref|YP_005367190.1| radical SAM protein [Corallococcus coralloides DSM 2259]
gi|380734154|gb|AFE10156.1| radical SAM protein [Corallococcus coralloides DSM 2259]
Length = 358
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 106/183 (57%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY + AV I+ GL ++P+ IT+STVG+V I + + + LAVSL
Sbjct: 164 MGEPLHNYEHTMAAVDILVDPKGL--ALAPRFITLSTVGVVPGILRLADEARPVQLAVSL 221
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H R ++PA R +PL +LM+A + Y +++IF E+ ++ G ND +HAH LG+
Sbjct: 222 HGATDAERAALVPAGRRWPLNELMDACRYYVAKRKRRIFFEWTLISGRNDTAEHAHHLGQ 281
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VN+IP NP S D V +FQ +L SY + +TVR++ G DI C
Sbjct: 282 LLHGMDAHVNVIPLNPTVGYDGG-PSVPDAVRAFQDVLT-SYGVPSTVRQRRGIDIDAGC 339
Query: 178 GQL 180
GQL
Sbjct: 340 GQL 342
>gi|374852470|dbj|BAL55402.1| hypothetical conserved protein [uncultured beta proteobacterium]
Length = 382
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+++M + +S +R+TVST G+V A+++ ++ P + LAVSLHA
Sbjct: 185 MGEPLANYDAVVRALKVMLDDFGYGLSRRRVTVSTSGLVPAMDRLRAECP-VALAVSLHA 243
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL++L+ A + Y S + I EY++LDGVND + A +L L
Sbjct: 244 PNDRLRDELVPINKKYPLKELIAACERYLTASPRDFIMFEYVLLDGVNDNPRDAQELIAL 303
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP S FR + ++V +F + L + + TT+R+ G D++ ACG
Sbjct: 304 TRGLSCKFNLIPFNPFPG-SPFRRPAPERVRAFAERLMAAGRL-TTIRRTRGDDVAAACG 361
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 362 QLAGQVKDR 370
>gi|337750136|ref|YP_004644298.1| protein RlmN [Paenibacillus mucilaginosus KNP414]
gi|336301325|gb|AEI44428.1| RlmN [Paenibacillus mucilaginosus KNP414]
Length = 358
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP NY A++ +R+M GL + + ITVST GIV I KF + +NLA+S+
Sbjct: 169 IGEPFENYDAVMTFLRVMIHPKGL--NIGQRHITVSTSGIVPNIYKFAEEETQINLAISI 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R ++MP R FP L+ A K Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 227 HAPNDALRSKLMPVNRRFPFADLIEACKYYVGKTGRRITFEYALMGGVNDQPEHAEELAQ 286
Query: 118 LLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++F + VNLIP N + + RT +D + +FQ+IL + I T+R++ G DI+ A
Sbjct: 287 VLQSFPMAHVNLIPVNFVSERNFVRTPRND-IFTFQRILEKN-KINATIRREQGSDIAAA 344
Query: 177 CGQL 180
CGQL
Sbjct: 345 CGQL 348
>gi|83647153|ref|YP_435588.1| Fe-S-cluster redox protein [Hahella chejuensis KCTC 2396]
gi|123753570|sp|Q2SDW1.1|RLMN_HAHCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83635196|gb|ABC31163.1| predicted Fe-S-cluster redox enzyme [Hahella chejuensis KCTC 2396]
Length = 378
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A +M F +S +R+TVST G+V A++K D+ ++LA+SLHA
Sbjct: 169 MGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKL-GDVTDVSLAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R ++P + +P+E+L+ A Y + + +++I +EY ++ GVND E HAH+L
Sbjct: 228 PNNSLRDVLVPVNKKYPIEELLAACHRYLGKLSDKRRITVEYTLIAGVNDSETHAHELRD 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFNP + S + S + FQK+L + + TVR G DI AC
Sbjct: 288 LLRDLPCKINLIPFNPFPN-SGYERPSRNATLRFQKVLSDAGYV-ATVRTTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 346 GQLVGRVEDR 355
>gi|332522196|ref|ZP_08398448.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
gi|332313460|gb|EGJ26445.1| 23S rRNA m2A2503 methyltransferase [Streptococcus porcinus str.
Jelinkova 176]
Length = 360
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 116/201 (57%), Gaps = 8/201 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ H I +F ++ +NLAVSL
Sbjct: 162 IGEPFDNYKNVMTFLRTINDDNGLA--IGARHITVSTSGLAHKIREFANEGVQVNLAVSL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R IM R+FPLEKL A++ Y + + +++ EYIML+ VND + A +L
Sbjct: 220 HAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQAKELAA 279
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + VNLIP+NP+ Q+ S +V +F +L+ + + VR++ G DI
Sbjct: 280 LTKNIRKLSYVNLIPYNPVSEHDQYSRSPKARVEAFYDVLKKN-GVNCVVRQEHGTDIDA 338
Query: 176 ACGQLVVNLPDKISAKSTPPV 196
ACGQL N K K+ V
Sbjct: 339 ACGQLRSNTMKKDRQKAVAKV 359
>gi|448243474|ref|YP_007407527.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445213838|gb|AGE19508.1| 23S rRNA m(2)A2503 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|453061734|gb|EMF02731.1| ribosomal RNA large subunit methyltransferase N [Serratia
marcescens VGH107]
Length = 398
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + +E ++A++ Y + S Q ++ +EY+MLD +ND AHQL
Sbjct: 251 PNDTIRDEIVPINRKYNIETFLSAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|322373635|ref|ZP_08048171.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
gi|321278677|gb|EFX55746.1| radical SAM enzyme, Cfr family [Streptococcus sp. C150]
Length = 389
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 115/188 (61%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ Q+ S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDQYSRSTKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|343494437|ref|ZP_08732699.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
gi|342825342|gb|EGU59841.1| ribosomal RNA large subunit methyltransferase N [Vibrio
nigripulchritudo ATCC 27043]
Length = 372
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ +M L F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + +++ Y +S + K+ IEY++LD VND+ +HA QL
Sbjct: 226 PNDKLRSEIMPINDRWDIEDFLTSVRRYIASSNANRGKVTIEYVLLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S +R S+ ++ F K L ++ TVRK G DI A
Sbjct: 286 ELLKDTPAKINLIPFNPYPG-SPYRKPSNSRIDRFMKTLM-KHDYTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|407013702|gb|EKE27806.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium (gcode 4)]
Length = 355
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 105/183 (57%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
M EP NY + +++ I+ S +R+T+ST IV I KF +D P +LA+SLHA
Sbjct: 159 MWEPFLNYENVKKSIEIVCSQNKLDFSNRRVTISTCWIVPWIKKFWTDFPQTSLAISLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R IMP +PL LM AL+EY + +K+F EYIM+ VND ++A L +LL
Sbjct: 219 ATDELRKSIMPCNIMYPLSMLMPALEEYVAKTNKKVFYEYIMIAWVNDSLENAKDLAELL 278
Query: 120 ETFQVVVNLIPFN--PIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
VN IP+N S S+ +++S ++ FQ IL + +++T+R MG DI AC
Sbjct: 279 RWKLAHVNFIPYNEGEGDSESEMKSTSKSRIKEFQNILFDVW-LQSTIRHTMGDDIDAAC 337
Query: 178 GQL 180
QL
Sbjct: 338 WQL 340
>gi|284045197|ref|YP_003395537.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
gi|283949418|gb|ADB52162.1| radical SAM enzyme, Cfr family [Conexibacter woesei DSM 14684]
Length = 329
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 111/184 (60%), Gaps = 7/184 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKF-HSDLPGLNLAVSLHA 59
MGEP+ N ++ A R + + ++ +R +STVG + I + S++P + LA+SLHA
Sbjct: 148 MGEPMMNLDHVLAACRALPSI--GITHRRTAISTVGWIPGIERLTDSEMP-IRLALSLHA 204
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + +R QIMP +PL ++ A +++ + ++ +FIEY+ML GVND A QL +LL
Sbjct: 205 PDEALRSQIMPVNDRYPLRDVLRACRDFYEKKRRMVFIEYVMLGGVNDGYAQALQLARLL 264
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
E + VNLIP+NP S+ + SS + + +F+ +L + I TVR G+DI ACGQ
Sbjct: 265 EPWMFKVNLIPYNPTDSI--YDGSSREAIETFRAVLE-EHGISATVRLTRGRDIDAACGQ 321
Query: 180 LVVN 183
L V
Sbjct: 322 LAVK 325
>gi|121593579|ref|YP_985475.1| radical SAM protein [Acidovorax sp. JS42]
gi|205829704|sp|A1W574.1|RLMN_ACISJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120605659|gb|ABM41399.1| 23S rRNA m(2)A-2503 methyltransferase [Acidovorax sp. JS42]
Length = 374
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 115/195 (58%), Gaps = 11/195 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYAALV A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLAQDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +PL +L+ A + Y ++ + I EY ML+GVND+ +HA QL L
Sbjct: 223 PNDVLRDNLVPLNRKYPLHELLAACRRYLDHAPRDFITFEYCMLEGVNDQPEHARQLIDL 282
Query: 119 LET------FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 172
+ NLIPFNP S R S V++F ++L + I TTVRK G D
Sbjct: 283 VGRKAADGGVSCKFNLIPFNPF-PASGLRRSPPAAVTAFAQLLSDA-GIVTTVRKTRGDD 340
Query: 173 ISGACGQLVVNLPDK 187
I ACGQL ++ D+
Sbjct: 341 IDAACGQLAGDVKDR 355
>gi|385263273|ref|ZP_10041365.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. SK643]
gi|385188587|gb|EIF36072.1| 23S rRNA m2A2503 methyltransferase [Streptococcus sp. SK643]
Length = 361
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F +L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDMLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVN 183
GQL N
Sbjct: 341 GQLRSN 346
>gi|315646180|ref|ZP_07899300.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
gi|315278379|gb|EFU41695.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
vortex V453]
Length = 346
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A ++ +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 161 GEPFENYEATMKFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFTEENTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R FP + ++ +L+ YQ + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRHYQAKTGRRITFEYALIGGVNDQVEHAEELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIP N + RTS +D + FQ+ L + T+R++ G DI+ ACG
Sbjct: 279 IKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQRAL-ADKGVNVTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|354724673|ref|ZP_09038888.1| ribosomal RNA large subunit methyltransferase N [Enterobacter mori
LMG 25706]
Length = 388
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + ++ Y + S Q ++ IEY+MLD VND +HAH+L
Sbjct: 241 PNDAIRDEIVPINKKYNIETFLAGVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP++P R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWSPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|358450412|ref|ZP_09160875.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
gi|385331231|ref|YP_005885182.1| hypothetical protein HP15_1490 [Marinobacter adhaerens HP15]
gi|311694381|gb|ADP97254.1| conserved hypothetical protein [Marinobacter adhaerens HP15]
gi|357225343|gb|EHJ03845.1| radical SAM protein [Marinobacter manganoxydans MnI7-9]
Length = 370
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 119/190 (62%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+A+ +M L + +S +R+T+ST G+V A+++ S++ ++LA+SLHA
Sbjct: 169 MGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRL-SEVTDVSLAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R +++P + +P+ +L+ A K Y + ++K IEY +++G+ND+ +HA +L
Sbjct: 228 PNDELRNKLVPLNKKYPISELLAATKRYFARLPDKRKATIEYTVIEGMNDQPEHARELAV 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFNP S FR S + FQ +L + I TT+R G DI AC
Sbjct: 288 LLRDLPCKINLIPFNPFPE-SDFRRPSMNATRRFQNVLNEAGYI-TTIRTTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 346 GQLVGRVEDR 355
>gi|58038729|ref|YP_190693.1| Fe-S-cluster redox protein [Gluconobacter oxydans 621H]
gi|81352583|sp|Q5FUA9.1|RLMN_GLUOX RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|58001143|gb|AAW60037.1| Putative Fe-S-cluster redox enzyme [Gluconobacter oxydans 621H]
Length = 407
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M G +S +RIT+ST G+V +++ +L G+NLA+SLHA
Sbjct: 214 MGEPLYNYENVAKAMRIIMDGEGIALSRRRITLSTSGVVPMMDRCGDEL-GINLAISLHA 272
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R QI+P R +P+E+L+ A + Y S ++I EYIML GVND E A +L +L
Sbjct: 273 VTNELRDQIVPLNRKYPIEELIAACRRYPAASNSRRITFEYIMLRGVNDSEADARELVRL 332
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S F+ S+ +++ F I+ + + +R GQDI ACG
Sbjct: 333 IRDLPAKVNLIPFNPWPG-SDFQPSTRQQLTKFANIVMDA-GFASPIRTPRGQDILAACG 390
Query: 179 QL 180
QL
Sbjct: 391 QL 392
>gi|253575779|ref|ZP_04853114.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
gi|251844822|gb|EES72835.1| cfr family radical SAM enzyme [Paenibacillus sp. oral taxon 786
str. D14]
Length = 348
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A ++ +RIM GL + + ITVST GIV I +F + +NLA+S+H
Sbjct: 161 GEPFENYDATMKFLRIMIHEKGL--NIGQRHITVSTSGIVPNIYRFADENTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R FP + +M AL+ Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDALRSKLMPVNRRFPFDDVMEALRYYIAKTGRRITFEYALIGGVNDQPEHAEELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIP N + RTS +D + FQ+IL I T+R++ G DI+ ACG
Sbjct: 279 IKDMLCHVNLIPVNYVPERKYVRTSRND-IFKFQRIL-ADKGINVTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|358635845|dbj|BAL23142.1| Fe-S cluster redox protein [Azoarcus sp. KH32C]
Length = 377
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 112/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+R+M + +S +R+TVST GIV A+++ + P + LAVSLHA
Sbjct: 177 MGEPLTNFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECP-VALAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y ++ + + EY+MLDGVND + HA L L
Sbjct: 236 PDDALRDRLVPINQKYPLRELMAACQRYLERAPRDFVTFEYVMLDGVNDTDAHARALVAL 295
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + F S D++ F IL + I TT RK G D++ ACG
Sbjct: 296 VRDVPCKFNLIPFNPFPNAG-FERSHPDRIRRFASILIDA-GIVTTTRKTRGDDVNAACG 353
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 354 QLAGQVQDR 362
>gi|344995748|ref|YP_004798091.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor lactoaceticus 6A]
gi|343963967|gb|AEM73114.1| Ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor lactoaceticus 6A]
Length = 344
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 5/181 (2%)
Query: 2 GEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHA 59
GEP +N + + + I+ + + + IT+STVGIV I + D P +NLA+SLHA
Sbjct: 157 GEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R +++P + +P+E +M A+ Y K + +++ EY ++DGVND + A +LGK+L
Sbjct: 216 PNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKML 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ V VNLIP NP+ FR S +K+ +F + LR SY I+ T+R+++G IS ACGQ
Sbjct: 276 KGKLVHVNLIPVNPVEE-KGFRRPSKEKIKAFFETLR-SYQIQVTIRRELGSSISAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|383310914|ref|YP_005363724.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|421264754|ref|ZP_15715719.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|425064743|ref|ZP_18467868.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
gi|425066859|ref|ZP_18469979.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|380872186|gb|AFF24553.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. HN06]
gi|401687798|gb|EJS83499.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. P52VAC]
gi|404380645|gb|EJZ77135.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida P1059]
gi|404380929|gb|EJZ77418.1| Ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. gallicida X73]
Length = 394
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LA+SLHA
Sbjct: 188 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAISLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM+++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 247 PNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLA 306
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK G DI A
Sbjct: 307 QVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 364
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 365 CGQLAGDVIDR 375
>gi|384432095|ref|YP_005641455.1| ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
gi|333967563|gb|AEG34328.1| Ribosomal RNA large subunit methyltransferase N [Thermus
thermophilus SG0.5JP17-16]
Length = 355
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 3/190 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +++AVRIM +SP+R+T+STVGI I + + G+ LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R +I+P A +P+ ++M A++ Y +++++ EY +L GVND A L KLL
Sbjct: 218 PDDETRRKIIPTAHRYPIAEIMEAVRHYYAKTKRRVTFEYTLLKGVNDHLWQARLLAKLL 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIPFNP T ++ +++ R + T++R GQD+ ACGQ
Sbjct: 278 KGLSAHVNLIPFNPWEGAPVAGTPKAGVLAFAEELKR--LGVPTSIRWSRGQDVGAACGQ 335
Query: 180 LVVNLPDKIS 189
L + +P ++
Sbjct: 336 LALKVPRPLT 345
>gi|157961130|ref|YP_001501164.1| ribosomal RNA large subunit methyltransferase N [Shewanella
pealeana ATCC 700345]
gi|205829883|sp|A8H242.1|RLMN_SHEPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157846130|gb|ABV86629.1| radical SAM enzyme, Cfr family [Shewanella pealeana ATCC 700345]
Length = 373
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D+ + LAVS+HA
Sbjct: 167 MGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDVLDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PLE+ + ++ Y S + ++ +EY+MLD +ND AH+L
Sbjct: 226 PNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 KLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|170725898|ref|YP_001759924.1| ribosomal RNA large subunit methyltransferase N [Shewanella woodyi
ATCC 51908]
gi|205829887|sp|B1KKI9.1|RLMN_SHEWM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|169811245|gb|ACA85829.1| radical SAM enzyme, Cfr family [Shewanella woodyi ATCC 51908]
Length = 373
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+TVST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PLE+ + ++ Y S + ++ +EY+MLD +ND AH+L
Sbjct: 226 PNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ +NLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 KLMKDTPCKINLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|354582480|ref|ZP_09001382.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
gi|353199879|gb|EHB65341.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
Length = 346
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A ++ +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 161 GEPFENYDATMKFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFAEEDTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R FP + ++ AL+ YQ + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIEALRFYQAKTGRRITFEYALIGGVNDQVEHAEELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIP N + RTS +D + FQ+ L + T+R++ G DI+ ACG
Sbjct: 279 IKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQRAL-ADKGVNVTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|407071964|ref|ZP_11102802.1| ribosomal RNA large subunit methyltransferase N [Vibrio
cyclitrophicus ZF14]
Length = 380
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ ++ IM L F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L YN TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYNYTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|323342528|ref|ZP_08082760.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
gi|336066671|ref|YP_004561529.1| ribosomal RNA large subunit methyltransferase RlmN [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|322463640|gb|EFY08834.1| cfr family radical SAM enzyme [Erysipelothrix rhusiopathiae ATCC
19414]
gi|334296617|dbj|BAK32488.1| ribosomal RNA large subunit methyltransferase RlmN [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 347
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 111/188 (59%), Gaps = 7/188 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +RI+ GL + + IT+ST G+ I KF + +NLA+SL
Sbjct: 159 IGEPFDNYDNIMRFIRIVNHDHGLG--IGARHITISTSGVAPVIKKFADEQTQVNLAISL 216
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R +IMP + F LEKL +ALK YQ S +++ EYI++D VND+ A +L
Sbjct: 217 HAPNDTLRSEIMPVNKMFNLEKLFDALKYYQSKSNRRLTFEYILIDNVNDQIAQAKELVA 276
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ VNLIP+N + + FR + ++ + F L+ + I+ T+R++ G +I AC
Sbjct: 277 LIRGMNAYVNLIPYNEVDE-NPFRQTKPEQAAKFYDYLKRN-GIQCTIRREKGSEIDAAC 334
Query: 178 GQLVVNLP 185
GQL N+
Sbjct: 335 GQLRANVE 342
>gi|289167665|ref|YP_003445934.1| hypothetical protein smi_0819 [Streptococcus mitis B6]
gi|288907232|emb|CBJ22067.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 361
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|372489753|ref|YP_005029318.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Dechlorosoma suillum PS]
gi|359356306|gb|AEV27477.1| 23S rRNA m2A2503 methyltransferase [Dechlorosoma suillum PS]
Length = 367
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 119/203 (58%), Gaps = 7/203 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A V A+++M + +S +R+TVST G+V A+++ + P + LAVSLHA
Sbjct: 166 MGEPLANFEAAVAALKLMLDDNAYGLSRRRVTVSTSGLVPAMDRLRDECP-VALAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +P+ +LM A + Y +K + + EY+MLDGVND + HA +L +
Sbjct: 225 PNDKLRDELVPINQKYPIAELMAACQRYLEKAPRDFVTFEYVMLDGVNDSDAHARELLAI 284
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP S FR S +++ F IL + + TT RK G DI ACG
Sbjct: 285 TRDVPCKFNLIPFNPFPG-SPFRRSKAERIRRFADILIQA-GVVTTTRKTRGDDIDAACG 342
Query: 179 QLVVNLPDKI--SAKSTPPVTDI 199
QL + DK + + T P+ ++
Sbjct: 343 QLAGQVQDKTRRNERRTIPIQEM 365
>gi|417854881|ref|ZP_12500147.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
gi|338217251|gb|EGP03142.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Anand1_goat]
Length = 394
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LA+SLHA
Sbjct: 188 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAISLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM+++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 247 PNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLA 306
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK G DI A
Sbjct: 307 QVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 364
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 365 CGQLAGDVIDR 375
>gi|312793230|ref|YP_004026153.1| radical sam enzyme, cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180370|gb|ADQ40540.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 344
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 5/181 (2%)
Query: 2 GEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHA 59
GEP +N + + + I+ + + + IT+STVGIV I + D P +NLA+SLHA
Sbjct: 157 GEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R +++P + +P+E +M A+ Y K + +++ EY ++DGVND + A +LGK+L
Sbjct: 216 PNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKML 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ V VNLIP NP+ FR S +K+ +F + LR SY I+ T+R+++G IS ACGQ
Sbjct: 276 KGKLVHVNLIPVNPVEE-KGFRRPSKEKIKAFFETLR-SYQIQVTIRRELGSSISAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|219683780|ref|YP_002470163.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis AD011]
gi|387820682|ref|YP_006300725.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis B420]
gi|387822356|ref|YP_006302305.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bi-07]
gi|219621430|gb|ACL29587.1| radical SAM enzyme, Cfr family protein [Bifidobacterium animalis
subsp. lactis AD011]
gi|386653383|gb|AFJ16513.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis B420]
gi|386654964|gb|AFJ18093.1| Ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bi-07]
Length = 393
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V I + + + LAVSL
Sbjct: 203 MGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSL 262
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R +++P R F ++++++A +Y S++++ IEY ++ G+ND+E HA QL
Sbjct: 263 HAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYALMRGINDQEIHARQLAN 322
Query: 118 LLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L + VN IP NPI S++ S + F +IL + I T+R GQDI
Sbjct: 323 RLNHYGDNWAHVNPIPLNPI-EGSKWTASKPEDERRFLEILHNA-GITATLRDTRGQDID 380
Query: 175 GACGQLVV 182
GACGQL
Sbjct: 381 GACGQLAA 388
>gi|312796090|ref|YP_004029012.1| radical SAM protein [Burkholderia rhizoxinica HKI 454]
gi|312167865|emb|CBW74868.1| Radical SAM family enzyme [Burkholderia rhizoxinica HKI 454]
Length = 391
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V A+R+M + +S +R+T+ST G+V I++ ++LP + LAVSLHA
Sbjct: 183 MGEPLLNFDAVVPAMRLMLDDHAYGLSRRRVTLSTSGVVPMIDRLAAELP-VALAVSLHA 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PL +LM A Y + + + I EY MLDGVND ++HA QL L
Sbjct: 242 PNDALRDELVPLNRKYPLAELMAACNRYLRVAPRDFITFEYCMLDGVNDRDEHARQLLAL 301
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F +IL + + TTVR+ G DI ACG
Sbjct: 302 TRDVPCKFNLIPFNPFPESGLLR-SHPERIKQFAQILIDA-GVVTTVRRTRGDDIDAACG 359
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 360 QLAGEVRDR 368
>gi|374307506|ref|YP_005053937.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
gi|291166481|gb|EFE28527.1| radical SAM enzyme, Cfr family [Filifactor alocis ATCC 35896]
Length = 345
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 116/180 (64%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +N+ LV+ ++++ Q+ + IT+ST G+V I + +NLA+SLH
Sbjct: 158 GEPFDNFDNLVKFLKLVHEDYGLQIGYRHITISTCGLVPKIREMEKLGIPINLAISLHQV 217
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
Q+ R +IMP A+ + +E+L+ A K Y +++++ EY +++GV D + AH+LG LL+
Sbjct: 218 EQNKREEIMPIAKVYDIEELIEAGKHYANVTKRRVTYEYALIEGVTDSLEEAHKLGSLLK 277
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
++NLIP NPI S F+ + +V +FQK+L +Y+I TTVR+++G DI+GACGQL
Sbjct: 278 GSLSLINLIPINPIKEKS-FKKPNLKRVQAFQKVLL-NYHIITTVRRELGSDINGACGQL 335
>gi|197336065|ref|YP_002155383.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
MJ11]
gi|254807222|sp|B5FAW9.1|RLMN_VIBFM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|197317555|gb|ACH67002.1| radical SAM enzyme, Cfr family [Vibrio fischeri MJ11]
Length = 372
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + ++ +EY++LD VND+ HA QL
Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ F K L Y+ T+RK G DI A
Sbjct: 286 ELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDYTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|409385914|ref|ZP_11238437.1| Ribosomal RNA large subunit methyltransferase N [Lactococcus
raffinolactis 4877]
gi|399206801|emb|CCK19352.1| Ribosomal RNA large subunit methyltransferase N [Lactococcus
raffinolactis 4877]
Length = 383
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 106/185 (57%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GE +NY ++ ++ + GL + + ITVST G+ I +F +NLA+SL
Sbjct: 171 IGETFDNYDNVINFIKTINNDNGLA--IGARHITVSTSGLAPKIREFAETGLQINLAISL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP DVR IM R FP+EKL A+ Y + + +++ EYIML GVND +HA +L
Sbjct: 229 HAPNNDVRTSIMRINRQFPIEKLFEAIDYYIEVTNRRVTFEYIMLSGVNDRPEHARELVA 288
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + V VNLIP+NP+ Q+ SS D V F IL+ I +R++ G DI
Sbjct: 289 LLKDKKKLVYVNLIPYNPVSEHDQYSRSSKDDVLKFYDILKKG-GINCVIRQEHGTDIDA 347
Query: 176 ACGQL 180
ACGQL
Sbjct: 348 ACGQL 352
>gi|389872367|ref|YP_006379786.1| radical SAM protein [Advenella kashmirensis WT001]
gi|388537616|gb|AFK62804.1| radical SAM superfamily protein 2 [Advenella kashmirensis WT001]
Length = 242
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 123/207 (59%), Gaps = 11/207 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+ +M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 37 MGEPLLNYDQVLPALLLMLDDNAYGLSRRRVTVSTSGVVPFMDRLAHDCP-VALAVSLHA 95
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P R +PL +L+ A Y +++ + I EY+MLDGVND ++HA QL +
Sbjct: 96 PNDALRDQLVPLNRKYPLAELIAACNRYLEHAPRDFITFEYVMLDGVNDSDEHARQLVDI 155
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ +NLIPFNP S + SS+ ++ F +L + TTVRK G+DI ACG
Sbjct: 156 TRQVKCKLNLIPFNPFPE-SGLKRSSNARIRQFSSLLVDQ-GVITTVRKTRGEDIDAACG 213
Query: 179 QLVVNLPD------KISAKSTPPVTDI 199
QL ++ D ++ A + P+T+I
Sbjct: 214 QLAGDVKDRTRISERMQAFKSIPITEI 240
>gi|379722974|ref|YP_005315105.1| protein RlmN [Paenibacillus mucilaginosus 3016]
gi|386725759|ref|YP_006192085.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
mucilaginosus K02]
gi|378571646|gb|AFC31956.1| RlmN [Paenibacillus mucilaginosus 3016]
gi|384092884|gb|AFH64320.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
mucilaginosus K02]
Length = 358
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP NY A++ +R+M GL + + ITVST GIV I KF + +NLA+S+
Sbjct: 169 IGEPFENYDAVMTFLRVMIHPKGL--NIGQRHITVSTSGIVPNIYKFAEEETQINLAISI 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R ++MP R FP L+ A K Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 227 HAPNDALRSKLMPVNRRFPFADLIEACKFYVGKTGRRITFEYALMGGVNDQPEHAEELAQ 286
Query: 118 LLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++F + VNLIP N + + RT +D + +FQ+IL + I T+R++ G DI+ A
Sbjct: 287 VLQSFPMAHVNLIPVNFVSERNFVRTPRND-IFTFQRILEKN-KINATIRREQGSDIAAA 344
Query: 177 CGQL 180
CGQL
Sbjct: 345 CGQL 348
>gi|332305581|ref|YP_004433432.1| radical SAM family protein [Glaciecola sp. 4H-3-7+YE-5]
gi|410646698|ref|ZP_11357148.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
gi|332172910|gb|AEE22164.1| radical SAM enzyme, Cfr family [Glaciecola sp. 4H-3-7+YE-5]
gi|410133870|dbj|GAC05547.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola agarilytica
NO2]
Length = 380
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 173 MGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH L
Sbjct: 232 PDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALA 291
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK G DI A
Sbjct: 292 KVLADTPSKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAA 349
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 350 CGQLVGDVVDR 360
>gi|269120621|ref|YP_003308798.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
gi|268614499|gb|ACZ08867.1| radical SAM enzyme, Cfr family [Sebaldella termitidis ATCC 33386]
Length = 357
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKR-ITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP N+ +++++ I+ + Q KR TVST G+V I KF +NLAVSLH+
Sbjct: 172 MGEPFLNFDNVMDSIDILNSIDGQNCSKRNFTVSTSGLVPYIEKFTDLDSQVNLAVSLHS 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ R +IMP + +PL+ L +L YQK ++++I EYI++D N + A +L K L
Sbjct: 232 VNDEYRSKIMPVNKKYPLKDLKKSLLAYQKKTKKRISFEYILIDDFNCSKNDAFELTKFL 291
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F +VNLIP+NP+ S + T S + F +IL + NI T+R+ GQDI+ ACGQ
Sbjct: 292 REFSCLVNLIPYNPVAGKS-YATPSKTRQQEFYRILLKN-NINATLRETKGQDIAAACGQ 349
Query: 180 LVV 182
L V
Sbjct: 350 LKV 352
>gi|322376321|ref|ZP_08050814.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
gi|321282128|gb|EFX59135.1| radical SAM enzyme, Cfr family [Streptococcus sp. M334]
Length = 361
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAVV 359
>gi|386866950|ref|YP_006279944.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. animalis ATCC 25527]
gi|385701033|gb|AFI62981.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. animalis ATCC 25527]
Length = 398
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V I + + + LAVSL
Sbjct: 208 MGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSL 267
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R +++P R F ++++++A +Y S++++ IEY ++ G+ND+E HA QL
Sbjct: 268 HAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYALMRGINDQEVHARQLAN 327
Query: 118 LLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L + VN IP NPI S++ S + F +IL + I T+R GQDI
Sbjct: 328 RLNHYGDNWAHVNPIPLNPI-EGSKWTASKPEDERRFLEILHNA-GITATLRDTRGQDID 385
Query: 175 GACGQLVV 182
GACGQL
Sbjct: 386 GACGQLAA 393
>gi|336310628|ref|ZP_08565600.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
gi|386314500|ref|YP_006010665.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|205829898|sp|A1RHQ0.2|RLMN_SHESW RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319427125|gb|ADV55199.1| radical SAM enzyme, Cfr family [Shewanella putrefaciens 200]
gi|335866358|gb|EGM71349.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
HN-41]
Length = 373
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 KLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|410641928|ref|ZP_11352447.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
gi|410138830|dbj|GAC10634.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola
chathamensis S18K6]
Length = 380
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 173 MGEPLLNLKNVVPAMDLMLDDLAFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +P+++ + ++ Y S Q K+ +EY+ML+G+ND AH L
Sbjct: 232 PDDTLRDEIVPINKKYPIQEFLAGVRRYLAKSNANQGKVTVEYVMLNGINDSTDQAHALA 291
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK G DI A
Sbjct: 292 KVLADTPSKINLIPFNPYPG-SPYSRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAA 349
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 350 CGQLVGDVVDR 360
>gi|255292044|dbj|BAH90525.1| conserved hypothetical protein [uncultured bacterium]
gi|255292512|dbj|BAH89627.1| radical SAM enzyme [uncultured bacterium]
gi|255293032|dbj|BAH90127.1| radical SAM enzyme [uncultured bacterium]
Length = 364
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 7/184 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+R+M L + +S +R+TVST G+V I++ + P + LAVSLHA
Sbjct: 168 MGEPLLNFDNVVAAIRVMLDDLAYGLSWRRVTVSTSGVVPMIDRLREECP-VALAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +P++ L++A + Y Q++ I EY +L GVND A L KL
Sbjct: 227 PDDALRAELVPLNRRYPIDVLLDACRRYVAGDQRRRITFEYTLLAGVNDHPGQAKALAKL 286
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMGQDISGAC 177
L VNLIP+NP+ + + TS V+ F+ ++LR + + TVRK G DI+GAC
Sbjct: 287 LARVPSKVNLIPYNPVAGLP-YATSPPQAVAQFRDELLR--HGLVATVRKTRGDDIAGAC 343
Query: 178 GQLV 181
GQL
Sbjct: 344 GQLA 347
>gi|422013650|ref|ZP_16360269.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
gi|414102688|gb|EKT64279.1| ribosomal RNA large subunit methyltransferase N [Providencia
burhodogranariea DSM 19968]
Length = 393
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 187 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P DVR +I+P + + +E +++++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 246 PTDDVRDEIVPINKKYNIETFLSSVRRYLSKSNANSGRVTVEYVMLDHINDSIEQAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP + + SS+ ++ F K+L Y T VRK G DI A
Sbjct: 306 ECLKDTPSKINLIPWNPFPG-APYNRSSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 364 CGQLAGDVIDR 374
>gi|410618485|ref|ZP_11329430.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
gi|410162027|dbj|GAC33568.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola polaris LMG
21857]
Length = 380
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M L F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 173 MGEPLLNLKNVVPAMELMLDDLAFGLSKRRVTLSTSGVVPALD-ILGDKIDVALAISLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +++P + +P+++ + ++ Y S Q K+ +EY+ML+GVND AH L
Sbjct: 232 PDDKLRDELVPVNKKYPIQEFLAGVRRYLAKSHANQGKVTVEYVMLNGVNDSTDQAHALA 291
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L +NLIPFNP S + SS+ ++ F K+L SY + VRK G DI A
Sbjct: 292 KVLADTPCKLNLIPFNPYPG-SPYTRSSNSRIDRFAKVL-SSYGLMVVVRKTRGDDIDAA 349
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 350 CGQLVGDVVDR 360
>gi|152979682|ref|YP_001345311.1| ribosomal RNA large subunit methyltransferase N [Actinobacillus
succinogenes 130Z]
gi|205829707|sp|A6VQX9.1|RLMN_ACTSZ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|150841405|gb|ABR75376.1| radical SAM enzyme, Cfr family [Actinobacillus succinogenes 130Z]
Length = 371
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K ++ + LA+SLHA
Sbjct: 165 MGEPLLNMANVVPAMEIMLDDFAYGLSKRRVTISTSGVVPALDKL-PEMIDVALAISLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM+++ Y + K+ IEY++LD VND +HAHQL
Sbjct: 224 PNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVLLDHVNDGTEHAHQLA 283
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L+ +NLIP+NP + + SS+ +V FQK L Y TVRK G DI A
Sbjct: 284 DVLKNTPCKINLIPWNPFPE-APYAKSSNSRVDRFQKTLM-EYGFTVTVRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 342 CGQLAGDVIDR 352
>gi|59711233|ref|YP_204009.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
ES114]
gi|423685341|ref|ZP_17660149.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
gi|75354452|sp|Q5E775.1|RLMN_VIBF1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59479334|gb|AAW85121.1| predicted enzyme [Vibrio fischeri ES114]
gi|371495253|gb|EHN70849.1| ribosomal RNA large subunit methyltransferase N [Vibrio fischeri
SR5]
Length = 372
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + ++ +EY++LD VND+ HA QL
Sbjct: 226 PTDELRSQIMPINDRWDIDAFLASVRRYIASSNANRGRVTVEYVLLDHVNDDMDHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ F K L Y+ T+RK G DI A
Sbjct: 286 ELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-EYDYTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|407803612|ref|ZP_11150446.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
gi|407022456|gb|EKE34209.1| Fe-S-cluster redox protein [Alcanivorax sp. W11-5]
Length = 382
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 116/192 (60%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+RIM L + +S +RIT+ST G+V I++ DL ++LA+SLHA
Sbjct: 168 MGEPLLNYDNVVRAMRIMKDDLGYGISKRRITLSTSGVVPMIDRLSQDLD-VSLAISLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ---KNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R ++P R +PLE+L+ A + Y ++ + I +EY++L G+ND+ +HA QL
Sbjct: 227 PNDALRDVLVPLNRKYPLEELLAACQRYSDGVEHRHKSITMEYVLLKGINDQPEHARQLV 286
Query: 117 KLLET-FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
KLL + +NLIPFNP R + D V +F K L + TT+R G DI
Sbjct: 287 KLLRNRMPIKLNLIPFNPFPHSGYERPAKPD-VLAFHKYL-NENGLMTTIRTTRGDDIDA 344
Query: 176 ACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 345 ACGQLVGEVMDR 356
>gi|15603872|ref|NP_246946.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida subsp. multocida str. Pm70]
gi|378774950|ref|YP_005177193.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
gi|81636369|sp|Q9CJJ8.1|RLMN_PASMU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|12722449|gb|AAK04091.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597498|gb|AET16224.1| ribosomal RNA large subunit methyltransferase N [Pasteurella
multocida 36950]
Length = 394
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LA+SLHA
Sbjct: 188 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAISLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM+++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 247 PNDELRDEIVPINKKYNIKMLMDSVNRYLSVSNANHGKVTIEYVMLDHVNDGVEHAHQLA 306
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK G DI A
Sbjct: 307 QVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 364
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 365 CGQLAGDVIDR 375
>gi|149200056|ref|ZP_01877081.1| YloN [Lentisphaera araneosa HTCC2155]
gi|149136814|gb|EDM25242.1| YloN [Lentisphaera araneosa HTCC2155]
Length = 345
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 8/187 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+N + ++ +T F++ + I+VST G++ + + P +NLA+SLHA
Sbjct: 158 MGEPLHNTKEVFSSIEELTAEDSFKIGSRHISVSTSGLLKGVKEMAEKFPQVNLALSLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R IMP +AF LEK+ L EY ++ +K+FIEY++L+G N+E HA +L K L
Sbjct: 218 AKDELRSSIMPINKAFDLEKIRTCLDEYIDSTHRKVFIEYVLLEGENNELSHAVELSKFL 277
Query: 120 ETFQ----VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
++ + NLI +N S+ + S+ K F+ L+ S + T+RK +G+DI G
Sbjct: 278 KSLKRPELTHTNLIVYNETD--SEHKGSTKQKADQFRNHLK-SKGLSVTIRKNLGRDIDG 334
Query: 176 ACGQLVV 182
ACGQL V
Sbjct: 335 ACGQLAV 341
>gi|56461137|ref|YP_156418.1| ribosomal RNA large subunit methyltransferase N [Idiomarina
loihiensis L2TR]
gi|81363032|sp|Q5QYC0.1|RLMN_IDILO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56180147|gb|AAV82869.1| Predicted Fe-S-cluster redox enzyme [Idiomarina loihiensis L2TR]
Length = 378
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M L F +S +R+T+ST G+V A+ K + + LA+SLHA
Sbjct: 170 MGEPLLNLNNVVPAMELMLDDLGFGLSKRRVTLSTSGVVPALEKLRERIDVM-LAISLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R +I+P + + +E+ + + + Y Q +Q+K+ +EY+MLD VND AH L K
Sbjct: 229 PDDELRNEIVPINKKYNIEEFLASSRRYVEQSKAQRKVTVEYVMLDHVNDSTDQAHALAK 288
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S + SS+ ++ F K+L Y + VRK G DI AC
Sbjct: 289 TLKDTPSKINLIPFNPFPG-SDYGRSSNSRIDRFAKVLM-EYGLTVMVRKTRGDDIDAAC 346
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 347 GQLVGDVIDR 356
>gi|322392191|ref|ZP_08065652.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
gi|321144726|gb|EFX40126.1| cfr family radical SAM enzyme [Streptococcus peroris ATCC 700780]
Length = 361
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ +R I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFIRTINDDKGMAIGARHITVSTSGLAHKIRAFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVTEHDQYSRSPKERVMAFYDTLK-KHGVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVN 183
GQL N
Sbjct: 341 GQLRSN 346
>gi|336124879|ref|YP_004566927.1| Radical SAM family enzyme [Vibrio anguillarum 775]
gi|335342602|gb|AEH33885.1| Radical SAM family enzyme [Vibrio anguillarum 775]
Length = 386
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 180 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQID-VALAISLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y S + K+ +EY++LD VND+ HAH+L
Sbjct: 239 PNDKLRSEIMPINDRWDIQDFLASVRRYIATSNANRGKVTVEYVLLDHVNDDMDHAHELA 298
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK G DI A
Sbjct: 299 KLMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKTRGDDIDAA 356
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 357 CGQLVGDVIDR 367
>gi|292491212|ref|YP_003526651.1| radical SAM protein [Nitrosococcus halophilus Nc4]
gi|291579807|gb|ADE14264.1| radical SAM enzyme, Cfr family [Nitrosococcus halophilus Nc4]
Length = 372
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 7/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +M + +S +R+T+ST G+V A+++ + P ++LAVSLHA
Sbjct: 167 MGEPLANFNNVVAAMNLMLDDFSYGLSWRRVTLSTAGMVPAMDRLRAICP-VSLAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +P+ +L+ A + Y +++ + EY+ML GVND QHA L +L
Sbjct: 226 PTDELRDELVPLNKRYPIGELLAACRRYVAGDRRRAVTFEYVMLAGVNDSLQHARALLRL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGAC 177
L+ VNLIPFNP S +R S + + F +++LRG + T RK G DI+ AC
Sbjct: 286 LQGLPAKVNLIPFNPFPG-SLYRRSDTETIDRFREELLRGG--LMTVTRKTRGDDIAAAC 342
Query: 178 GQLVVNLPDK 187
GQL + D+
Sbjct: 343 GQLAGRVQDR 352
>gi|422344989|ref|ZP_16425912.1| cfr family radical SAM enzyme [Selenomonas noxia F0398]
gi|355376131|gb|EHG23392.1| cfr family radical SAM enzyme [Selenomonas noxia F0398]
Length = 346
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 108/180 (60%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL NY +V A+R++ +S + IT+ST GIV I + + ++L++SLHAP
Sbjct: 160 GEPLENYDNVVAALRLLHEDYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHAP 219
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+++R +IMP R +PL ++ A + Y + +++++ EYI++ VND + A QL KLL
Sbjct: 220 TEELRSEIMPVNRMYPLADVLRAARFYAERTKRRVTYEYILIRDVNDGPREAEQLAKLLR 279
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NP+ S FR + FQKIL +I T+R++MG DI ACGQL
Sbjct: 280 GQLASVNLIPINPVAERSLFR-PDKAAIRRFQKIL-AQRHITATLRREMGTDIQAACGQL 337
>gi|336236099|ref|YP_004588715.1| ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720640|ref|ZP_17694822.1| ribosomal RNA large subunit methyltransferase N, radical SAM
superfamily [Geobacillus thermoglucosidans TNO-09.020]
gi|335362954|gb|AEH48634.1| Ribosomal RNA large subunit methyltransferase N [Geobacillus
thermoglucosidasius C56-YS93]
gi|383365993|gb|EID43284.1| ribosomal RNA large subunit methyltransferase N, radical SAM
superfamily [Geobacillus thermoglucosidans TNO-09.020]
Length = 364
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L++ ++I+ + + ITVST GI+ I +F + +N A+SLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R ++MP +A+PL KLM+A++ Y + + +++ EY + GVND+ +HA QL +L+
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGRRVTFEYGLFGGVNDQLEHAEQLAELI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP N + + RT +++ +F++ L+ + I T+R++ G DI ACGQ
Sbjct: 296 KGLKCHVNLIPVNYVPERNYVRTPR-EQIFAFERALK-KHGINVTIRREQGHDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|410621688|ref|ZP_11332534.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410158926|dbj|GAC27908.1| 23S rRNA (adenine2503-C2)-methyltransferase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 385
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+RIM F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 178 MGEPLLNLKNVVPAMRIMLDDFGFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + +P+E+ + +++ Y K +Q K+ +EY+ML+ +ND AH+L
Sbjct: 237 PDNKLRDEIVPVNKKYPIEEFLASVRRYLAKSKANQGKVTVEYVMLNQINDSTDQAHELA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP + + SS+ ++ F K+L Y +RK G DI A
Sbjct: 297 KVLKETPCKINLIPFNPYPG-TPYTCSSNSRMDRFSKVLM-EYGFTVVIRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 355 CGQLVGDVVDR 365
>gi|421291572|ref|ZP_15742312.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA56348]
gi|395894874|gb|EJH05851.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA56348]
Length = 344
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 113/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST+G+ H I F + +NLAVSLHA
Sbjct: 145 IGEPFDNYNNVLNFFRTINDDKGMTIGARHITVSTLGLAHKIRDFADEGVQVNLAVSLHA 204
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 205 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDSVEQALELTELL 264
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 265 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 323
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 324 GQLRSNTMKRDRQKAVAAV 342
>gi|183601687|ref|ZP_02963057.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|241190814|ref|YP_002968208.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241196220|ref|YP_002969775.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|384193808|ref|YP_005579554.1| radical SAM enzyme, Cfr family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195372|ref|YP_005581117.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
lactis V9]
gi|423679341|ref|ZP_17654217.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis BS 01]
gi|183219293|gb|EDT89934.1| hypothetical protein BIFLAC_03507 [Bifidobacterium animalis subsp.
lactis HN019]
gi|240249206|gb|ACS46146.1| hypothetical protein Balac_0778 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250774|gb|ACS47713.1| hypothetical protein Balat_0778 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295793803|gb|ADG33338.1| hypothetical protein BalV_0750 [Bifidobacterium animalis subsp.
lactis V9]
gi|345282667|gb|AEN76521.1| radical SAM enzyme, Cfr family [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041452|gb|EHN17947.1| ribosomal RNA large subunit methyltransferase N [Bifidobacterium
animalis subsp. lactis BS 01]
Length = 398
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V I + + + LAVSL
Sbjct: 208 MGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSL 267
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R +++P R F ++++++A +Y S++++ IEY ++ G+ND+E HA QL
Sbjct: 268 HAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYALMRGINDQEIHARQLAN 327
Query: 118 LLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L + VN IP NPI S++ S + F +IL + I T+R GQDI
Sbjct: 328 RLNHYGDNWAHVNPIPLNPI-EGSKWTASKPEDERRFLEILHNA-GITATLRDTRGQDID 385
Query: 175 GACGQLVV 182
GACGQL
Sbjct: 386 GACGQLAA 393
>gi|118602407|ref|YP_903622.1| radical SAM protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|205829871|sp|A1AW44.1|RLMN_RUTMC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|118567346|gb|ABL02151.1| 23S rRNA m(2)A-2503 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 356
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 114/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A+ A ++ L F +S +++T+ST G+V A+ + P ++LAVSLHA
Sbjct: 161 MGEPLLNEHAVYNACDLLLDDLAFGLSRRKVTISTSGVVPAMLRMSERTP-VSLAVSLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
+R +++P + + LE+L+ A K Y + QK I EY+ML GVND +HA++L K
Sbjct: 220 SDDHLRNELVPINQKYSLEELLKACKVYLQAGTQKRHILFEYVMLKGVNDSIEHANKLVK 279
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ +NLIPFN +Q++TSS + FQ IL IRT R+ G+DI GAC
Sbjct: 280 LLKGISAKINLIPFNSFEK-TQYQTSSAQTIEKFQNILYHQ-GIRTMTRRTRGEDIGGAC 337
Query: 178 GQLVVNLPDK 187
GQL + DK
Sbjct: 338 GQLAGKVLDK 347
>gi|313668447|ref|YP_004048731.1| hypothetical protein NLA_11430 [Neisseria lactamica 020-06]
gi|313005909|emb|CBN87365.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 364
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHAH+L L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS + + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|452745027|ref|ZP_21944865.1| ribosomal RNA large subunit methyltransferase N [Mannheimia
haemolytica serotype 6 str. H23]
gi|452086867|gb|EME03252.1| ribosomal RNA large subunit methyltransferase N [Mannheimia
haemolytica serotype 6 str. H23]
Length = 386
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM + +S +R+T+ST G+V A++K + + LA+SLHA
Sbjct: 180 MGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQID-VALAISLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +++P + + ++ LM+++ +Y++ S K+ IEY+MLD VND HAHQL
Sbjct: 239 PNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGKVTIEYVMLDHVNDSTNHAHQLA 298
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ +V FQK L Y TVRK G DI A
Sbjct: 299 EVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVTVRKTRGDDIDAA 356
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 357 CGQLAGDVIDR 367
>gi|270264732|ref|ZP_06192997.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386823492|ref|ZP_10110640.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|421785006|ref|ZP_16221440.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
gi|270041415|gb|EFA14514.1| hypothetical protein SOD_i01490 [Serratia odorifera 4Rx13]
gi|386379610|gb|EIJ20399.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica PRI-2C]
gi|407752723|gb|EKF62872.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica A30]
Length = 398
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND AHQL
Sbjct: 251 PNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|120598175|ref|YP_962749.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
W3-18-1]
gi|120558268|gb|ABM24195.1| radical SAM enzyme, Cfr family [Shewanella sp. W3-18-1]
Length = 399
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 193 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 251
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND + AH+L
Sbjct: 252 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 311
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 312 KLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 369
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 370 CGQLAGDIRDR 380
>gi|333928648|ref|YP_004502227.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333933601|ref|YP_004507179.1| ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|386330471|ref|YP_006026641.1| ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
gi|333475208|gb|AEF46918.1| Ribosomal RNA large subunit methyltransferase N [Serratia
plymuthica AS9]
gi|333492708|gb|AEF51870.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS12]
gi|333962804|gb|AEG29577.1| Ribosomal RNA large subunit methyltransferase N [Serratia sp. AS13]
Length = 398
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + +E + A++ Y + S Q ++ +EY+MLD +ND AHQL
Sbjct: 251 PNDKIRDEIVPINRKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|384191061|ref|YP_005576809.1| radical SAM protein [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192206|ref|YP_005577953.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|289178553|gb|ADC85799.1| Radical SAM family enzyme [Bifidobacterium animalis subsp. lactis
BB-12]
gi|340364943|gb|AEK30234.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
Length = 430
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP+ NY A+V AVR ++ +P F +S + ITVSTVG+V I + + + LAVSL
Sbjct: 240 MGEPMGNYRAIVSAVRQISAMPPEGFGISARNITVSTVGVVPGIRRLAQEGMPVRLAVSL 299
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R +++P R F ++++++A +Y S++++ IEY ++ G+ND+E HA QL
Sbjct: 300 HAPNNALRDELVPMNRRFNVDEVLDAAHDYYLASKRRVSIEYALMRGINDQEIHARQLAN 359
Query: 118 LLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L + VN IP NPI S++ S + F +IL + I T+R GQDI
Sbjct: 360 RLNHYGDNWAHVNPIPLNPI-EGSKWTASKPEDERRFLEILHNA-GITATLRDTRGQDID 417
Query: 175 GACGQLVV 182
GACGQL
Sbjct: 418 GACGQLAA 425
>gi|312111725|ref|YP_003990041.1| radical SAM protein [Geobacillus sp. Y4.1MC1]
gi|311216826|gb|ADP75430.1| radical SAM enzyme, Cfr family [Geobacillus sp. Y4.1MC1]
Length = 364
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 114/181 (62%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L++ ++I+ + + ITVST GI+ I +F + +N A+SLHA
Sbjct: 176 IGEPFDNYDELIKFLKIVNHAKGLNIGARHITVSTSGIIPKIYQFADEGMQVNFAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R ++MP +A+PL KLM+A++ Y + + +++ EY + GVND+ +HA QL +L+
Sbjct: 236 PTTELRTKLMPINKAYPLPKLMDAVRYYIEKTGRRVTFEYGLFGGVNDQLEHAEQLAELI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + VNLIP N + + RT +++ +F++ L+ + I T+R++ G DI ACGQ
Sbjct: 296 KGLKCHVNLIPVNYVPERNYVRTPR-EQIFAFERALK-KHGINVTIRREQGHDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|261405801|ref|YP_003242042.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
Y412MC10]
gi|329926635|ref|ZP_08281048.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|261282264|gb|ACX64235.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
gi|328939176|gb|EGG35539.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 346
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A ++ +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 161 GEPFENYEATMKFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFTEEDTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R FP + ++ +L+ YQ + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDKLRSKLMPVNRRFPFDDVIESLRYYQAKTGRRITFEYALIGGVNDQVEHAEELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIP N + RTS +D + FQ+ L + T+R++ G DI+ ACG
Sbjct: 279 IKDMNCFVNLIPVNHVPERKYVRTSRND-IFKFQRAL-ADKGVNVTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|410697864|gb|AFV76932.1| 23S rRNA m2A2503 methyltransferase [Thermus oshimai JL-2]
Length = 363
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 7/197 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N +++AVR + GL +SP+RIT+STVGI I + + G+ LA+SL
Sbjct: 166 MGEPLLNLTNVLKAVRTLLHPKGL--AMSPRRITLSTVGIPRGIYRLAEEDLGIRLALSL 223
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP + R +I+P A +P+ ++M A++ Y +++++ EY +L G+ND A L +
Sbjct: 224 HAPDDETRKKIIPTAHRYPIAEIMEAVRAYYAKTKRRVTFEYTLLQGLNDHPWQARLLSR 283
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ VNLIPFNP + + + + +F + L+ I T+VR GQD+ AC
Sbjct: 284 LLKGLSAHVNLIPFNPWPG-APVKGTPKAGILAFAEELK-RQGIPTSVRFSRGQDVGAAC 341
Query: 178 GQLVVNLPDKISAKSTP 194
GQL + P ++ K P
Sbjct: 342 GQLALRTPQALTFKPLP 358
>gi|419781460|ref|ZP_14307281.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK100]
gi|383184178|gb|EIC76703.1| 23S rRNA m2A2503 methyltransferase [Streptococcus oralis SK100]
Length = 361
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ VR I + + ITVST G+ H I F ++ +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVRTINDDKGMAIGARHITVSTSGLAHKIRDFANEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVMAFYGTLKKK-GVNCVVRQEHGIDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|34498996|ref|NP_903211.1| hypothetical protein CV_3541 [Chromobacterium violaceum ATCC 12472]
gi|81654669|sp|Q7NS85.1|RLMN_CHRVO RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|34104846|gb|AAQ61203.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 364
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 120/202 (59%), Gaps = 7/202 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A++IM + +S +R+T+ST G+V +++ + P + LAVSLHA
Sbjct: 163 MGEPLANFDNVVSAMQIMLDDHGYGLSRRRVTLSTSGLVPQMDRLREECP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R I+P + +PL +LM A + Y +K + I EY+MLDGVND +HA QL +L
Sbjct: 222 PNDAIRDVIVPINKKYPLSELMAACRRYLEKAPRDFITFEYVMLDGVNDRPEHARQLLEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + SS++ + F++IL+ + TVRK G DI ACG
Sbjct: 282 VRDVPCKFNLIPFNPFPN-SGYDRSSNNAIRIFREILQEQGYV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDKI--SAKSTPPVTD 198
QL + DK AK T + D
Sbjct: 340 QLAGQVQDKTRRQAKWTQIIED 361
>gi|73541777|ref|YP_296297.1| hypothetical protein Reut_A2089 [Ralstonia eutropha JMP134]
gi|123732898|sp|Q46ZI0.1|RLMN_CUPPJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|72119190|gb|AAZ61453.1| 23S rRNA m(2)A-2503 methyltransferase [Ralstonia eutropha JMP134]
Length = 384
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DLP + LAVSLHA
Sbjct: 169 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLP-VALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
+R ++P + +PL +LM A + Y + + + I EY MLDGVND +HA +L KL
Sbjct: 228 SNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP S + S++D++ F ++L + I TT+RK G DI ACG
Sbjct: 288 VADVPCKFNLIPFNPFPE-SGLKRSNNDQIRRFAQVLMDA-GIVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 346 QLAGEVKDR 354
>gi|304404145|ref|ZP_07385807.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304347123|gb|EFM12955.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 356
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY + +RIM GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 169 GEPFENYEPTMNFLRIMIHEKGL--NIGQRHITVSTSGIVPNIYKFADENTQINLAISIH 226
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R FP +M +L+ Y + ++I EY ++ GVND +HA +L ++
Sbjct: 227 APNDALRSKLMPVNRRFPFNDVMESLRYYIAKTGRRITFEYALIGGVNDRPEHAEELAQV 286
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + + RT DD + FQ+IL + I T+R++ G DI+ ACG
Sbjct: 287 LQGMLCHVNLIPVNHVPERNYVRTPRDD-IFEFQRILE-KHKINATIRREQGHDIAAACG 344
Query: 179 QL 180
QL
Sbjct: 345 QL 346
>gi|381151853|ref|ZP_09863722.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
gi|380883825|gb|EIC29702.1| 23S rRNA m2A2503 methyltransferase [Methylomicrobium album BG8]
Length = 370
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +M F +S +R+T+ST G+V A+ + +++ ++LAVSLHA
Sbjct: 169 MGEPLLNFDNVVAAMNLMMDDFAFGLSKRRVTLSTSGVVPAMYRL-TEVCDVSLAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R Q++P + +PL +LM A ++ K + ++ I EY+MLDG+ND + A L +L
Sbjct: 228 VRDELRDQLVPINKKYPLSELMEACRDNAKLAPRRTITFEYVMLDGINDSPEDAKGLIEL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L T +NLIPFNP + S +R SS+++++ F+ +L + I TTVRK G DI ACG
Sbjct: 288 LSTVPSKLNLIPFNPFPN-SPYRCSSNNRINLFKTMLNEA-GIVTTVRKTRGDDIDAACG 345
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 346 QLVGKVKDR 354
>gi|297584286|ref|YP_003700066.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
gi|297142743|gb|ADH99500.1| radical SAM enzyme, Cfr family [Bacillus selenitireducens MLS10]
Length = 358
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L+ +RI+ + + + ITVST G+V I F + +NLAVSLHA
Sbjct: 163 IGEPFDNYDNLMSFLRIVNSDRGLAIGARHITVSTSGLVEKIRAFADENLQVNLAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D+R IM + P+E +M+A+ Y + + ++I +EYI+LDGVND+ +HA +L +L+
Sbjct: 223 PNNDLRSSIMKINKGQPIEDVMSAIDYYLEKTNRRITLEYILLDGVNDKPEHAKELAELV 282
Query: 120 ETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ +NLIP+NP+ Q++ S + +F +L + ++ VR + G DI AC
Sbjct: 283 RDKKKLTYINLIPYNPVDEYIQYKQSEKGAILTFYDLLMKN-GVQCGVRHEQGSDIDAAC 341
Query: 178 GQL 180
GQL
Sbjct: 342 GQL 344
>gi|339326398|ref|YP_004686091.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
gi|338166555|gb|AEI77610.1| ribosomal RNA large subunit methyltransferase N [Cupriavidus
necator N-1]
Length = 384
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DLP + LAVSLHA
Sbjct: 169 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLP-VALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
+R ++P + +PL +LM A + Y + + + I EY MLDGVND +HA +L KL
Sbjct: 228 SNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP S + S++D++ F ++L + I TT+RK G DI ACG
Sbjct: 288 VADVPCKFNLIPFNPFPE-SGLKRSNNDQIRRFAQVLMDA-GIVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 346 QLAGEVKDR 354
>gi|167562546|ref|ZP_02355462.1| radical SAM enzyme, Cfr family protein [Burkholderia oklahomensis
EO147]
Length = 378
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V ++K ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDKLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + PL +LM A + Y K + + I EY MLDGVND E HA +L L
Sbjct: 234 PNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S D++ F ++L + + TT+RK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLVR-SKPDQIKRFAQVLIDA-GVVTTIRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|421206211|ref|ZP_15663275.1| radical SAM superfamily protein [Streptococcus pneumoniae 2090008]
gi|421229413|ref|ZP_15686089.1| radical SAM superfamily protein [Streptococcus pneumoniae 2061376]
gi|421311514|ref|ZP_15762121.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA58981]
gi|395577291|gb|EJG37836.1| radical SAM superfamily protein [Streptococcus pneumoniae 2090008]
gi|395596917|gb|EJG57126.1| radical SAM superfamily protein [Streptococcus pneumoniae 2061376]
gi|395912092|gb|EJH22955.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA58981]
Length = 361
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 113/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST+G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMTIGARHITVSTLGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDSVEQALELTELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|260771398|ref|ZP_05880323.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|375131805|ref|YP_004993905.1| Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
gi|260613524|gb|EEX38718.1| ribosomal RNA large subunit methyltransferase N [Vibrio furnissii
CIP 102972]
gi|315180979|gb|ADT87893.1| predicted Fe-S-cluster redox enzyme [Vibrio furnissii NCTC 11218]
Length = 373
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDTLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK G DI A
Sbjct: 286 QLMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYDHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|354580914|ref|ZP_08999818.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
gi|353201242|gb|EHB66695.1| radical SAM enzyme, Cfr family [Paenibacillus lactis 154]
Length = 347
Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 11/188 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP--FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
MGE L N + +A+ ++T +P F + +RITVST+G++ I K + P +NL SLH
Sbjct: 155 MGEALAN-PYVFDALHVLT-VPKLFGLGHRRITVSTIGLIPGIKKLTKEFPQINLTFSLH 212
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+P D R ++MP FPLE+++ L E+ + +++K++I YI+L G+ND +HA + L
Sbjct: 213 SPFNDQRSELMPINNHFPLEEVLTVLDEHIQQTKRKVYIAYILLRGINDSTKHAEAVADL 272
Query: 119 LET-----FQVVVNLIPFNPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQD 172
L + VNLIP+N + SQ F S + ++ F K+L+ S I TVR Q G D
Sbjct: 273 LRSRGSWEHLYHVNLIPYNSTDATSQSFAESDQNSINMFLKVLK-SKGIHVTVRTQFGSD 331
Query: 173 ISGACGQL 180
I+ ACGQL
Sbjct: 332 INAACGQL 339
>gi|334135998|ref|ZP_08509477.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF7]
gi|333606611|gb|EGL17946.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF7]
Length = 353
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L + +R++ GL + + ITVST G+ I +F +NLAVSL
Sbjct: 163 IGEPFDNFENLSDFLRVVKDHKGLA--IGARHITVSTSGLADKIVEFADSDLHVNLAVSL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM+A+ Y + +++ +EYI+L VND +HA +L +
Sbjct: 221 HAPNNELRTRIMKINKAIPIEKLMDAIDYYLGKTNRRLTLEYILLKDVNDAREHAEELAQ 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + V VNLIP+NP+ SQ++ S + V +F IL+ N+ +VR + G DI
Sbjct: 281 LIGDRRPLVNVNLIPYNPVDEHSQYQRSEKESVRAFYDILKKQ-NVSCSVRLEHGADIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|229916075|ref|YP_002884721.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
gi|229467504|gb|ACQ69276.1| radical SAM enzyme, Cfr family [Exiguobacterium sp. AT1b]
Length = 353
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVE---AVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ LV+ V+ GL ++P++I VST G+ I KF +NLA+SL
Sbjct: 161 IGEPFDNFDNLVDFLLVVKDERGLA--IAPRKINVSTSGLADKIYKFADLDLRINLALSL 218
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RAFPL+KLM +++ Y + + ++I EYI+L VND +HA +L
Sbjct: 219 HAPNDELRTRIMKINRAFPLDKLMPSIRYYVEKTNKRITFEYILLSKVNDLPEHAEELAD 278
Query: 118 LLETF--QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+E + VNLIP+NP+ Q+ S+ + + +F IL+ + T VR + G DI
Sbjct: 279 LIEDIKDKSYVNLIPYNPVNEHIQYERSTPEDIMAFYDILKKR-GVNTGVRLEHGTDIDA 337
Query: 176 ACGQL 180
ACGQL
Sbjct: 338 ACGQL 342
>gi|405355231|ref|ZP_11024457.1| Ribosomal RNA large subunit methyltransferase N [Chondromyces
apiculatus DSM 436]
gi|397091573|gb|EJJ22375.1| Ribosomal RNA large subunit methyltransferase N [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 366
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY + A+ ++ + + P+ IT+STVG+V I + + ++LAVSLH
Sbjct: 172 MGEPLHNYEHTMAAIDVLVDAMGLAMGPRFITLSTVGVVPGIRRLADEERPIHLAVSLHG 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R ++P R +PL++LM+A + Y + ++IF E+ ++ G ND +HAH LG+LL
Sbjct: 232 ATDAERAALVPVGRRWPLDELMDACRYYSEKRGRRIFFEWTLIAGRNDTAEHAHTLGQLL 291
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VN+IP NP S + V +FQ +L SY + +TVR++ G DI CGQ
Sbjct: 292 RGMDAHVNVIPLNPTVGYDGG-PSRPESVRAFQDVLT-SYAVPSTVRQRRGIDIDAGCGQ 349
Query: 180 LVVNLPDKISAKSTP 194
L ++ ++ + +S P
Sbjct: 350 LKADV-ERRARRSLP 363
>gi|343501746|ref|ZP_08739615.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|418481170|ref|ZP_13050218.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342816871|gb|EGU51763.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
ATCC 19109]
gi|384571122|gb|EIF01660.1| ribosomal RNA large subunit methyltransferase N [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 375
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ +M L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALELMLDDLAFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + +++ Y ++S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDKLRSEIMPINDRWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y TVRK G DI A
Sbjct: 286 ELLKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDKISAKST 193
CGQLV ++ D+ +T
Sbjct: 344 CGQLVGDVIDRTKRTAT 360
>gi|374596886|ref|ZP_09669890.1| 23S rRNA m(2)A-2503 methyltransferase [Gillisia limnaea DSM 15749]
gi|373871525|gb|EHQ03523.1| 23S rRNA m(2)A-2503 methyltransferase [Gillisia limnaea DSM 15749]
Length = 347
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +++AV +I + +SPKRIT+ST G+ I K D + LAVSLH+
Sbjct: 164 MGEPLMNYNNVMKAVEKITSKDGLGMSPKRITISTSGVPKMIKKLADDEAKIKLAVSLHS 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ ++R QIMP FPL+ L AL+ + ++ +I EYI+ +G+ND+ + A L +
Sbjct: 224 AIDEIRTQIMPFNATFPLQDLREALEYWYAKTKSRITYEYIVWEGINDKPKDAEALVRFC 283
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLI +NPI QF+ +S ++K+L + I TVR+ G+DI ACGQ
Sbjct: 284 KYVPCKVNLIEYNPIDD-GQFQQASSQATHMYEKMLEQN-GITVTVRRSRGKDIDAACGQ 341
Query: 180 LV 181
L
Sbjct: 342 LA 343
>gi|375311334|ref|ZP_09776589.1| hypothetical protein WG8_5123 [Paenibacillus sp. Aloe-11]
gi|375076514|gb|EHS54767.1| hypothetical protein WG8_5123 [Paenibacillus sp. Aloe-11]
Length = 365
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L + +R++ GL + P+ ITVST G+ I +F +NLA+SL
Sbjct: 163 IGEPFDNFVNLSDFIRVIKDHKGLA--IGPRHITVSTSGLADKIIEFADSDLHVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RA P+EKLM A+ Y + ++I +EYI+L VND ++HA +L +
Sbjct: 221 HAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNRRITLEYILLKDVNDGKEHALELAE 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ S + ++ F +L+ I +VR + G DI
Sbjct: 281 LVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLKKQ-GISCSVRLEHGVDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|332141967|ref|YP_004427705.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410862372|ref|YP_006977606.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
gi|327551989|gb|AEA98707.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Deep ecotype']
gi|410819634|gb|AFV86251.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii AltDE1]
Length = 372
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 165 MGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + ++ Y K +Q ++ +EY+ML +ND + AHQL
Sbjct: 224 PTDELRNEIVPVNKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQLA 283
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP S + SS+ ++ F K+L Y T VRK G DI A
Sbjct: 284 KVLKDTPSKINLIPFNPYPG-SPYTCSSNSRIDRFSKVLM-EYGFTTVVRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 342 CGQLVGDVVDR 352
>gi|308071465|ref|YP_003873070.1| hypothetical protein PPE_04773 [Paenibacillus polymyxa E681]
gi|305860744|gb|ADM72532.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 365
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 113/185 (61%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L + +R++ GL + P+ ITVST G+ I +F +NLA+SL
Sbjct: 163 IGEPFDNFVNLSDFIRVIKDHKGLA--IGPRHITVSTSGLADKIIEFADSDLHVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RA P+EKLM A+ Y + ++I +EYI+L VND ++HA +L +
Sbjct: 221 HAPNNEIRTRIMKINRAIPIEKLMQAIDYYLDKTNRRITLEYILLKDVNDGKEHALELAE 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ S + ++ F +L+ I +VR + G DI
Sbjct: 281 LVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDVLK-KQGISCSVRLEHGVDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|126663212|ref|ZP_01734210.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
gi|126624870|gb|EAZ95560.1| hypothetical protein FBBAL38_07660 [Flavobacteria bacterium BAL38]
Length = 346
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +++A+ ++T +SPKRITVST G+ I K D LAVSLH+
Sbjct: 164 MGEPLMNYPNVMKAIDMITSSEGLGMSPKRITVSTSGVSKMIKKMADDEVKFKLAVSLHS 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++++R +IMP ++FPL +L AL+ + + ++ K+ EY++ G+ND+++ L K
Sbjct: 224 AIEEIRNEIMPFTKSFPLTELREALEYWYRKTKSKVTYEYVVWKGINDDKKSIDALVKFC 283
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLI +NPI F+ +S+D +++ L S NI VR+ G+DI ACGQ
Sbjct: 284 KYVPCKVNLIEYNPIDD-GMFQQASEDATNAYITALAKS-NIVAKVRRSRGKDIDAACGQ 341
Query: 180 L 180
L
Sbjct: 342 L 342
>gi|113868341|ref|YP_726830.1| Fe-S-cluster redox protein [Ralstonia eutropha H16]
gi|123032871|sp|Q0K959.1|RLMN_CUPNH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113527117|emb|CAJ93462.1| Predicted Fe-S-cluster redox enzyme [Ralstonia eutropha H16]
Length = 384
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DLP + LAVSLHA
Sbjct: 169 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLP-VALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
+R ++P + +PL +LM A + Y + + + I EY MLDGVND +HA +L KL
Sbjct: 228 SNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP S + S++D++ F ++L + I TT+RK G DI ACG
Sbjct: 288 VADVPCKFNLIPFNPFPE-SGLKRSNNDQIRRFAQVLMDA-GIVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 346 QLAGEVKDR 354
>gi|167623296|ref|YP_001673590.1| ribosomal RNA large subunit methyltransferase N [Shewanella
halifaxensis HAW-EB4]
gi|205829881|sp|B0TLI1.1|RLMN_SHEHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|167353318|gb|ABZ75931.1| radical SAM enzyme, Cfr family [Shewanella halifaxensis HAW-EB4]
Length = 373
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PLE+ + ++ Y S + ++ +EY+MLD +ND AH+L
Sbjct: 226 PNDELRDVLVPVNKKYPLEEFLGGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 KLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|86145592|ref|ZP_01063922.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218708638|ref|YP_002416259.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
LGP32]
gi|254807223|sp|B7VJT5.1|RLMN_VIBSL RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|85836563|gb|EAQ54689.1| hypothetical protein MED222_01522 [Vibrio sp. MED222]
gi|218321657|emb|CAV17609.1| Predicted Fe-S-cluster redox enzyme [Vibrio splendidus LGP32]
Length = 380
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ ++ +M L F +S +R+TVST G+V +++ +D + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQM-TDNIDVALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L YN TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYNYTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|84387623|ref|ZP_00990640.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
gi|84377468|gb|EAP94334.1| hypothetical protein V12B01_09136 [Vibrio splendidus 12B01]
Length = 380
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ ++ +M L F +S +R+TVST G+V +++ +D + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPSLELMLDDLGFSLSKRRVTVSTSGVVSGLDQM-TDNIDVALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDALRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L YN TVRK G DI A
Sbjct: 286 ELMKETPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYNYTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|389580858|ref|ZP_10170885.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
gi|389402493|gb|EIM64715.1| 23S rRNA m2A2503 methyltransferase [Desulfobacter postgatei 2ac9]
Length = 346
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRIM--TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
MGEPL NY L+ ++ ++ T + S +++TVST GI I + D +NLAVSL+
Sbjct: 162 MGEPLANYDNLLRSLGVIFDTDFGMKFSRRKVTVSTSGIAPKIIQLGLDTE-VNLAVSLN 220
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
A ++R +MP R +P+E L+ A KE++ + KI EYI++ GVND + HAH L +L
Sbjct: 221 ATDNELRSSLMPVNRTWPIEALLAACKEFEMKPRNKITFEYILMSGVNDSDAHAHDLVRL 280
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L + VNLIPFN + F+ S D++++F IL + N+ VRK G DIS ACG
Sbjct: 281 LSPIRAKVNLIPFNE-HPQAPFKRPSRDRINAFLTILL-NRNMTAIVRKSKGDDISAACG 338
Query: 179 QL 180
QL
Sbjct: 339 QL 340
>gi|421493317|ref|ZP_15940674.1| YFGB [Morganella morganii subsp. morganii KT]
gi|400192485|gb|EJO25624.1| YFGB [Morganella morganii subsp. morganii KT]
Length = 395
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 189 MGEPLLNLTHVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDVALAISLHA 247
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P DVR +I+P + + +E + +++ Y S ++ +EY+MLD +ND AHQL
Sbjct: 248 PTDDVRDEIVPINKKYNIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDSTDQAHQLA 307
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 308 ACLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLM-EYGFTTIVRKTRGDDIDAA 365
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 366 CGQLAGDVIDR 376
>gi|430806169|ref|ZP_19433284.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
gi|429501549|gb|EKZ99880.1| Radical SAM enzyme, Cfr family protein [Cupriavidus sp. HMR-1]
Length = 384
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 121/209 (57%), Gaps = 14/209 (6%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DLP + LAVSLHA
Sbjct: 169 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLP-VALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
+R ++P R +PL +LM A + Y + + + I EY MLDGVND +HA +L KL
Sbjct: 228 SNDALRDVLVPLNRKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP S + S+++++ F +IL + I TT+RK G DI ACG
Sbjct: 288 VADVPCKFNLIPFNPFPE-SGLKRSNNEQIRRFAQILMDA-GIVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDKIS-------AKSTP--PVTD 198
QL + D+ K TP PV D
Sbjct: 346 QLAGEVMDRTRLAERGKFGKITPLVPVAD 374
>gi|268601574|ref|ZP_06135741.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291043577|ref|ZP_06569293.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
gi|268585705|gb|EEZ50381.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291012040|gb|EFE04029.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae DGI2]
Length = 364
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLNDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QHA++L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQAEFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|410085619|ref|ZP_11282338.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455738863|ref|YP_007505129.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
gi|409768328|gb|EKN52392.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii SC01]
gi|455420426|gb|AGG30756.1| Ribosomal RNA large subunit methyltransferase N [Morganella
morganii subsp. morganii KT]
Length = 392
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 186 MGEPLLNLTHVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDVALAISLHA 244
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P DVR +I+P + + +E + +++ Y S ++ +EY+MLD +ND AHQL
Sbjct: 245 PTDDVRDEIVPINKKYNIETFLASVRRYLGKSNANGGRVTVEYVMLDHINDSTDQAHQLA 304
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 305 ACLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFAKVLM-EYGFTTIVRKTRGDDIDAA 362
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 363 CGQLAGDVIDR 373
>gi|375109391|ref|ZP_09755639.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
gi|374570481|gb|EHR41616.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
jeotgali KCTC 22429]
Length = 375
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M F +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 169 MGEPLLNLNNVVPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKI-DVALAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +P+E+ + A + Y ++S+ K+ +EY+ML+G+ND AH+L K
Sbjct: 228 PNNALRDELVPVNKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAK 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S ++ SS+ ++ F K+L+ Y VRK G DI AC
Sbjct: 288 ALKDTPSKINLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-DYGFTVMVRKTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 346 GQLVGDVIDR 355
>gi|224373787|ref|YP_002608159.1| ribosomal RNA large subunit methyltransferase N [Nautilia
profundicola AmH]
gi|259491991|sp|B9L721.1|RLMN_NAUPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|223590036|gb|ACM93772.1| radical SAM enzyme, Cfr family [Nautilia profundicola AmH]
Length = 354
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 112/181 (61%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ALV+A++I+ +SP+R TVST GI I + ++ G+NLA+SLHA
Sbjct: 169 MGEPLDNYDALVKAIKILANPDGMNISPRRQTVSTSGIAPKIKRLGNENLGVNLAISLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R Q++P +A+ +E +++A++E+ + ++K+ EY+++ VND+ + A +L KLL
Sbjct: 229 VDDELREQLIPLNKAYNIESVIDAIREFPIDKRKKVMFEYLVIKDVNDDIESAKKLVKLL 288
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VNLI FNP + F+ D + FQ L I T+RK G DIS ACGQ
Sbjct: 289 NGIPSKVNLIYFNPYPG-TNFKRPDDATMKKFQDYLINK-GIMCTIRKSKGMDISAACGQ 346
Query: 180 L 180
L
Sbjct: 347 L 347
>gi|304408290|ref|ZP_07389938.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
gi|304342759|gb|EFM08605.1| radical SAM enzyme, Cfr family [Paenibacillus curdlanolyticus YK9]
Length = 357
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+A +V+ + ++ GL + P+ ITVST G+ + I +F +NLA+SL
Sbjct: 165 IGEPFDNFANMVDFINVVKDHKGLA--IGPRHITVSTSGLANKIYEFTDSNLQVNLAISL 222
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM RA P+ KLM A+ Y + ++I +EYI+L VND ++HA +L +
Sbjct: 223 HAPNDELRTRIMKINRAIPIAKLMEAIDYYLAKTNRRITLEYILLKDVNDRKEHALELAE 282
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ S D + F L+ + +VR + G DI
Sbjct: 283 LVGERRSLANVNLIPYNPVDEHSQYQRSEQDSIREFYDTLKKQ-GVSCSVRLEHGTDIDA 341
Query: 176 ACGQL 180
ACGQL
Sbjct: 342 ACGQL 346
>gi|148979605|ref|ZP_01815610.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
gi|145961690|gb|EDK26987.1| hypothetical protein VSWAT3_08963 [Vibrionales bacterium SWAT-3]
Length = 380
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ ++ IM L F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLMPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYDYTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|347820223|ref|ZP_08873657.1| radical SAM enzyme, Cfr family protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 370
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 119/194 (61%), Gaps = 7/194 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+AL+ A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 164 MGEPLQNYSALIPALRVMLDDHGYGLSRRRVTVSTSGVVPMLDRLAQDCP-VALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +P+ +L+ A K Y ++ + I EY MLDGVND+ A +L L
Sbjct: 223 PNDPLRDKLVPLNRKYPIHELLQACKRYLVHAPRDFITFEYCMLDGVNDQLAQARELIDL 282
Query: 119 LETFQVVV--NLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ ++ NLIPFNP + R S+ +++ +F K+L + I TTVR+ G DI A
Sbjct: 283 VRGAEIRCKFNLIPFNPFPASGLLR-STQNQLLAFAKVLSDA-GIVTTVRRTRGDDIDAA 340
Query: 177 CGQLVVNLPDKISA 190
CGQL ++ D+ A
Sbjct: 341 CGQLAGDVRDRTRA 354
>gi|220931837|ref|YP_002508745.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
gi|219993147|gb|ACL69750.1| radical SAM enzyme, Cfr family [Halothermothrix orenii H 168]
Length = 349
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++++A+ IM + ++ITVST G+V I + + LA+SL+A
Sbjct: 166 MGEPLANMKSVLKAIEIMNDSKGLNIGKRKITVSTSGLVPQIKELADKKLQIVLAISLNA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R ++MP R FPLEKL+ A++ Y + + +++ EY++L G ND +HA QL LL
Sbjct: 226 PNNALRDKLMPINRKFPLEKLLEAVRYYTEVTNRRVTFEYVLLKGTNDSPEHAFQLVNLL 285
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VNLIPFNP+ ++F+ S + V+ F+ IL + + TTVR++ G I ACGQ
Sbjct: 286 SDIHGHVNLIPFNPVQE-TEFKRPSKETVNRFKDILINN-GVETTVRQERGTRIEAACGQ 343
Query: 180 L 180
L
Sbjct: 344 L 344
>gi|375309203|ref|ZP_09774484.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus sp.
Aloe-11]
gi|375078512|gb|EHS56739.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus sp.
Aloe-11]
Length = 346
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 161 GEPFENYEATMTFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R +P +M+AL+ Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDALRSKLMPVNRRYPFNDVMDALRYYLAKTGRRISFEYALIGGVNDQAEHAEELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + RTS D + +FQ+IL I T+R++ G DI+ ACG
Sbjct: 279 LKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRIL-ADKGINVTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|417950305|ref|ZP_12593429.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
ATCC 33789]
gi|342806784|gb|EGU41996.1| ribosomal RNA large subunit methyltransferase N [Vibrio splendidus
ATCC 33789]
Length = 380
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ ++ IM L F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLMPSLEIMLDDLGFALSKRRVTVSTSGVVSGLDQMTDNID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-EYDYTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|33597413|ref|NP_885056.1| hypothetical protein BPP2857 [Bordetella parapertussis 12822]
gi|81579190|sp|Q7W6P5.1|RLMN_BORPA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33573840|emb|CAE38149.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 382
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 112/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+R+M + +S +R+TVST G+V +++ D P L LAVSLHA
Sbjct: 178 MGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCP-LALAVSLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PL L+ A + Y ++ + I EY MLDG+ND +QHA +L +L
Sbjct: 237 PNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQL 296
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ +NLIPFNP S + S +V F + L + I TTVRK G DI ACG
Sbjct: 297 ARQVRCKLNLIPFNPF-PASGLKRSPSARVRVFAQRLMDA-GIVTTVRKTRGDDIDAACG 354
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 355 QLAGEVRDR 363
>gi|59801026|ref|YP_207738.1| hypothetical protein NGO0596 [Neisseria gonorrhoeae FA 1090]
gi|194098883|ref|YP_002001947.1| hypothetical protein NGK_1322 [Neisseria gonorrhoeae NCCP11945]
gi|240013924|ref|ZP_04720837.1| hypothetical protein NgonD_04618 [Neisseria gonorrhoeae DGI18]
gi|240016366|ref|ZP_04722906.1| hypothetical protein NgonFA_04214 [Neisseria gonorrhoeae FA6140]
gi|240121493|ref|ZP_04734455.1| hypothetical protein NgonPI_06948 [Neisseria gonorrhoeae PID24-1]
gi|254493940|ref|ZP_05107111.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268594999|ref|ZP_06129166.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268596621|ref|ZP_06130788.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268599227|ref|ZP_06133394.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268603913|ref|ZP_06138080.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682376|ref|ZP_06149238.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684534|ref|ZP_06151396.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686844|ref|ZP_06153706.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|293398890|ref|ZP_06643055.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|385335912|ref|YP_005889859.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|75356171|sp|Q5F911.1|RLMN_NEIG1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807190|sp|B4RMG2.1|RLMN_NEIG2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|59717921|gb|AAW89326.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934173|gb|ACF29997.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226512980|gb|EEH62325.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548388|gb|EEZ43806.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae 35/02]
gi|268550409|gb|EEZ45428.1| ribosomal RNA large subunit methyltransferase N [Neisseria
gonorrhoeae FA19]
gi|268583358|gb|EEZ48034.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268588044|gb|EEZ52720.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622660|gb|EEZ55060.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624818|gb|EEZ57218.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627128|gb|EEZ59528.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610304|gb|EFF39414.1| cfr family radical SAM enzyme [Neisseria gonorrhoeae F62]
gi|317164455|gb|ADV07996.1| hypothetical protein NGTW08_1028 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 364
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QHA++L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHAYELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQAEFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|261212143|ref|ZP_05926429.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
gi|260838751|gb|EEX65402.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC341]
Length = 373
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +++ + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDKISAKST 193
CGQLV ++ D+ T
Sbjct: 344 CGQLVGDVIDRTKRTKT 360
>gi|293394872|ref|ZP_06639162.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
gi|291422623|gb|EFE95862.1| cfr family radical SAM enzyme [Serratia odorifera DSM 4582]
Length = 398
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + +E +++++ Y + S Q ++ +EY+MLD +ND AHQL
Sbjct: 251 PNDTIRDEIVPINRKYNIETFLSSVRRYLEKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|125973091|ref|YP_001037001.1| ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum ATCC 27405]
gi|256004594|ref|ZP_05429572.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281417286|ref|ZP_06248306.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|385779008|ref|YP_005688173.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|419721503|ref|ZP_14248666.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
gi|419725127|ref|ZP_14252180.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|205829739|sp|A3DCX9.1|RLMN_CLOTH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|125713316|gb|ABN51808.1| radical SAM enzyme, Cfr family [Clostridium thermocellum ATCC
27405]
gi|255991466|gb|EEU01570.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 2360]
gi|281408688|gb|EFB38946.1| radical SAM enzyme, Cfr family [Clostridium thermocellum JW20]
gi|316940688|gb|ADU74722.1| radical SAM enzyme, Cfr family [Clostridium thermocellum DSM 1313]
gi|380771448|gb|EIC05315.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum YS]
gi|380782443|gb|EIC12078.1| Ribosomal RNA large subunit methyltransferase N [Clostridium
thermocellum AD2]
Length = 349
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 119/185 (64%), Gaps = 3/185 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEPL+NY +V+ +R++ + + I+VST G+V I + + + L++SLHA
Sbjct: 159 IGEPLDNYENVVKFLRLVNHKDGINLGARHISVSTCGLVPEILRLAEEKIPVTLSISLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IMP + + ++K++ A K Y + + ++I EY M+DG+ND +++A +L K +
Sbjct: 219 PNDEIREKIMPINKRYSIDKIIEACKIYTETTNRRITFEYAMIDGLNDSKENALELAKRI 278
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VNLIP N + S + F+ SS +K+++F++IL + + TTVR+++G DI+ ACGQ
Sbjct: 279 RGMLCHVNLIPVNTV-SDTGFKRSSREKITAFKEILE-RFGVETTVRRELGSDINAACGQ 336
Query: 180 LVVNL 184
L NL
Sbjct: 337 LRRNL 341
>gi|336317392|ref|ZP_08572248.1| methyltransferase [Rheinheimera sp. A13L]
gi|335878325|gb|EGM76268.1| methyltransferase [Rheinheimera sp. A13L]
Length = 374
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 115/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M F +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 169 MGEPLLNLNNVVPAMELMLEDFGFGLSKRRVTLSTSGVVPALDMLKERID-VALAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +P+E+ + A K Y +S+ K+ +EY+MLDGVND + AH+L
Sbjct: 228 PNNTLRDELVPVNKKYPMEEFLAAAKRYVTDSRANDKVTVEYVMLDGVNDSMEQAHELAH 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ VNLIPFNP S ++ SS+ ++ F K+L+ + VRK G DI AC
Sbjct: 288 ALKGTPSKVNLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-EHGYTVMVRKTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 346 GQLVGDVIDR 355
>gi|365858071|ref|ZP_09398029.1| 23S rRNA m2A2503 methyltransferase [Acetobacteraceae bacterium
AT-5844]
gi|363714792|gb|EHL98275.1| 23S rRNA m2A2503 methyltransferase [Acetobacteraceae bacterium
AT-5844]
Length = 403
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 113/182 (62%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M +S +RIT+ST G+V ++K ++L + LAVSLHA
Sbjct: 204 MGEPLYNYENVAKAMRIIMDNEGIALSRRRITLSTSGVVPMMDKCGAEL-NVGLAVSLHA 262
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKL 118
D+R +I+P R +P+E+LM A + Y S ++I EY+ML GVND E A +L +L
Sbjct: 263 VRNDIRDEIVPLNRKYPIEELMAACRRYPAASNARRITFEYVMLKGVNDSEADARELVRL 322
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIPFNP S + TSS++ + F +I++ + + +R G+DI ACG
Sbjct: 323 LKGIPAKVNLIPFNPWPG-SPYETSSNNAIHRFARIVQEA-GYASPIRAPRGRDILAACG 380
Query: 179 QL 180
QL
Sbjct: 381 QL 382
>gi|456063410|ref|YP_007502380.1| radical SAM protein [beta proteobacterium CB]
gi|455440707|gb|AGG33645.1| radical SAM protein [beta proteobacterium CB]
Length = 397
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 114/193 (59%), Gaps = 5/193 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 166 MGEPLLNYDNVVTALRLMLDDRAYGLSRRRVTVSTSGVVPMIDRLAQDCP-VALAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P + +PL +L+ A + Y + + EY MLDGVND + A +L +L
Sbjct: 225 PNDKLRDQLVPLNQKYPLRELLAACERYLPFAPRDFLTFEYCMLDGVNDSDIQAKELVRL 284
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L + +NLIPFNP S + SS +V +F IL + + TVRK G DI+ ACG
Sbjct: 285 LANIKCKINLIPFNPFPE-SGLKRSSAQRVHAFASILLDA-GMVATVRKTRGDDIAAACG 342
Query: 179 QLVVNLPDKISAK 191
QL ++ D+ +
Sbjct: 343 QLAGDVVDRTRVR 355
>gi|383787538|ref|YP_005472107.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
gi|383110385|gb|AFG35988.1| 23S rRNA m(2)A-2503 methyltransferase [Fervidobacterium pennivorans
DSM 9078]
Length = 353
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 112/183 (61%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V++VRI+ + +S +RI++STVGI I + +DLP + LA+SLHA
Sbjct: 158 MGEPLLNYNEVVKSVRILNHKKGKNISMRRISISTVGIPEKIVQLANDLPEVKLAISLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P R I+P R + +E++++A+KEYQK ++ ++ EYI++ ND A +L +LL
Sbjct: 218 PTNYKRDLIIPMNRKYSVEEIIHAVKEYQKITKNRVTFEYILIREFNDFVDDAEKLAELL 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSS--DDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
VNLIP NP+ + S+ + + F++IL +NI +R++ G DI AC
Sbjct: 278 RGIGAYVNLIPVNPVETDSEIKMERPHHWAIERFKEIL-DKHNIENEIRREKGTDIDAAC 336
Query: 178 GQL 180
GQL
Sbjct: 337 GQL 339
>gi|416920669|ref|ZP_11932606.1| radical SAM superfamily protein [Burkholderia sp. TJI49]
gi|325526956|gb|EGD04412.1| radical SAM superfamily protein [Burkholderia sp. TJI49]
Length = 379
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 234 PNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAV 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F +IL + + TTVRK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLIR-SKPEQIKRFAQILIDA-GVVTTVRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|347759028|ref|YP_004866590.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13]
gi|347591546|gb|AEP10588.1| radical SAM superfamily protein [Micavibrio aeruginosavorus ARL-13]
Length = 378
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYA + +A++I M +S +RIT+ST G+V I + +L +NLA+SLHA
Sbjct: 189 MGEPLYNYANVAKAMQICMDEDGLGISKRRITLSTSGVVPQIVQCGEEL-NVNLAISLHA 247
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P VR +IMP +PL +L++A + Y + ++I EY+ML VND + A +L +L
Sbjct: 248 PNDAVRSEIMPINNKYPLAELLDACRNYPGLSDNRRITFEYVMLKDVNDSDDQARELAQL 307
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP + S + SS +++ +F +IL G +RK GQDI ACG
Sbjct: 308 LRGIPCKVNLIPFNPWPN-SPYECSSGNRIHAFARILNGE-GYDAPIRKTRGQDILAACG 365
Query: 179 QL 180
QL
Sbjct: 366 QL 367
>gi|339627429|ref|YP_004719072.1| radical SAM enzyme, Cfr family [Sulfobacillus acidophilus TPY]
gi|379008195|ref|YP_005257646.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
gi|339285218|gb|AEJ39329.1| radical SAM enzyme, Cfr family [Sulfobacillus acidophilus TPY]
gi|361054457|gb|AEW05974.1| 23S rRNA m(2)A-2503 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
Length = 353
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 3/190 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEPL+NY ++ + ++ L + + ITVST G+V I + + + LAVSLHA
Sbjct: 165 IGEPLDNYPNVIRFLHLVHDPLAMGLGYRHITVSTSGVVPKIYQLADEGLPVTLAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R Q+MP RA+P+ KLM+A + Y + + ++I EY++L G+ND ++ A +L +L+
Sbjct: 225 PTDALRSQLMPVNRAYPIRKLMDACRYYVERTGRRITFEYLLLRGINDHDELAVKLAELV 284
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F VNLIP+NP+ F S +V FQ I++ + I T+R+++GQ+I ACGQ
Sbjct: 285 RGFPSHVNLIPWNPVDE-HPFLPSPSAQVRRFQHIVQDA-GISCTIRRELGQEIDAACGQ 342
Query: 180 LVVNLPDKIS 189
L + + +S
Sbjct: 343 LRLREEEPVS 352
>gi|160880358|ref|YP_001559326.1| chloramphenicol/florfenicol resistance protein [Clostridium
phytofermentans ISDg]
gi|205829630|sp|A9KK15.1|CFR_CLOPH RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA
(adenine(2503)-C(8))-methyltransferase; AltName:
Full=23S rRNA m8A2503 methyltransferase
gi|160429024|gb|ABX42587.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
Length = 344
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 115/189 (60%), Gaps = 11/189 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L +A+ I+ F +S +RIT+ST+GI+ I + + P +NLA SLH+
Sbjct: 154 MGEPLAN-PNLFDALNILNDSSLFGLSQRRITISTIGIIPGIKRLTHEFPQINLAYSLHS 212
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++ R ++MP R+FPL ++MNAL + +++ +++F+ YIML+GVND HA L +LL
Sbjct: 213 PFENQRSELMPVNRSFPLHEVMNALDNHIRHTGRRLFLAYIMLNGVNDSVDHAKALVELL 272
Query: 120 E-----TFQVVVNLIPFNPIGSVSQFRTSSDDKVS--SFQKILRGSYNIRTTVRKQMGQD 172
+ V+LIP+N + + +S DK++ F+ IL + I R Q G D
Sbjct: 273 QDRGPWAHLYHVDLIPYNATDKTPR-KFASSDKITMKRFRDILHAN-GISVATRTQFGSD 330
Query: 173 ISGACGQLV 181
IS ACGQL+
Sbjct: 331 ISAACGQLL 339
>gi|93005478|ref|YP_579915.1| hypothetical protein Pcryo_0648 [Psychrobacter cryohalolentis K5]
gi|123264706|sp|Q1QD22.1|RLMN_PSYCK RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|92393156|gb|ABE74431.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter cryohalolentis
K5]
Length = 413
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 122/208 (58%), Gaps = 10/208 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M + + +S +R+T+ST G+V + + +L + LA+SLHA
Sbjct: 208 MGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQEL-DVALAISLHA 266
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
P ++R +++P + +PLE+LM A + Y ++ + IEY+MLDGVND +HA QL
Sbjct: 267 PNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQL 326
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL +NLIPFNP + + SS++++ +F IL + T+R+ G DI
Sbjct: 327 VALLGNLPSKINLIPFNPFPH-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDA 384
Query: 176 ACGQLVVNLPDKI--SAKSTPPVTDIED 201
ACGQLV + D+ SA + D E+
Sbjct: 385 ACGQLVGQVADRTRRSAAWQQSIKDREN 412
>gi|406915762|gb|EKD54811.1| hypothetical protein ACD_60C00041G0002 [uncultured bacterium]
Length = 381
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+T+ST G++ A+ + + + LAVSLHA
Sbjct: 171 MGEPLLNFENVVNAMNIMLDDFGYGLSKRRVTLSTAGVIPAMYELRK-VSDVALAVSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P + +PL++LM A KEY K +++ + +EY+ML G+ND +QHA QL +L
Sbjct: 230 PTDELRNVLVPLNKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDSDQHAQQLIRL 289
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ + VNLIPFNP + + ++ S + F++ L + I RK G I ACG
Sbjct: 290 LKGVRAKVNLIPFNPFPNTA-YKRSDQPTIDRFRETLMRA-GINAITRKTRGDAIDAACG 347
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 348 QLVGEVKDR 356
>gi|386345398|ref|YP_006041562.1| hypothetical protein STH8232_1952 [Streptococcus thermophilus JIM
8232]
gi|339278859|emb|CCC20607.1| hypothetical protein STH8232_1952 [Streptococcus thermophilus JIM
8232]
Length = 389
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ + S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKEIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYNVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|387910398|ref|YP_006340704.1| hypothetical protein Y1U_C1590 [Streptococcus thermophilus
MN-ZLW-002]
gi|387575333|gb|AFJ84039.1| hypothetical protein Y1U_C1590 [Streptococcus thermophilus
MN-ZLW-002]
Length = 389
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ + S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKEIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYNVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|55821670|ref|YP_140112.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus LMG 18311]
gi|386087297|ref|YP_006003171.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus ND03]
gi|81560179|sp|Q5M2V3.1|RLMN_STRT2 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|55737655|gb|AAV61297.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|312279010|gb|ADQ63667.1| Ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus ND03]
Length = 389
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ + S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVATFYDVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|31789482|gb|AAP58595.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 396
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 110/186 (59%), Gaps = 7/186 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY ++A+R++ GL VSP+R+T+STVGIV + + + NLAVSL
Sbjct: 198 MGEPLHNYDNTMKALRMLHAEAGL--AVSPRRVTLSTVGIVPGLERLAKESLMPNLAVSL 255
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA + R ++P R +PL +++A + + + +I EY++L+GVND + A +L +
Sbjct: 256 HATTDEQRTALVPPNRKYPLAAILDACRAFPLKKRNRITFEYVLLEGVNDTPEDAKRLVR 315
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL + VNLIP NP + F D +V F +L ++ +VRK G+DI AC
Sbjct: 316 LLSGIKSKVNLIPLNPAPGIP-FSRPPDARVDRFADVL-ARAHLTVSVRKSRGRDIRAAC 373
Query: 178 GQLVVN 183
GQL+V
Sbjct: 374 GQLIVE 379
>gi|384440606|ref|YP_005655330.1| ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
gi|359291739|gb|AEV17256.1| Ribosomal RNA large subunit methyltransferase N [Thermus sp.
CCB_US3_UF1]
Length = 358
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 111/188 (59%), Gaps = 7/188 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N +++AVR+M GL +SP+RIT+STVGI I + + G+ LA+SL
Sbjct: 161 MGEPLLNLTQVLKAVRLMLHPKGL--AMSPRRITLSTVGIPRGIYRLAEEDLGVRLALSL 218
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP + R +I+P A +P+ +++ A++ Y ++++I EY +L GVND A L +
Sbjct: 219 HAPDDETRRRIIPTAHRYPMAEILEAVRHYYAKTKRRITFEYTLLQGVNDHPWQARLLAR 278
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ VNLIPFNP + + + + +F + LR + T++R G+D+ AC
Sbjct: 279 LLQGISAHVNLIPFNPWEG-APVKGTPRAGILAFAQELR-RLGVPTSIRWSRGRDVGAAC 336
Query: 178 GQLVVNLP 185
GQL + P
Sbjct: 337 GQLALKAP 344
>gi|325577793|ref|ZP_08148068.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
gi|325160538|gb|EGC72664.1| cfr family radical SAM enzyme [Haemophilus parainfluenzae ATCC
33392]
Length = 382
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 175 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLR-DKIDVALAISLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + + LM+++ Y + S K+ IEY++LD VND +HAHQL
Sbjct: 234 PNDELRDEIMPINKKYNIRMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLA 293
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIP+NP + + SS+ +V FQK L Y VRK G DI A
Sbjct: 294 KVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKTRGDDIDAA 351
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 352 CGQLAGDVIDR 362
>gi|31789377|gb|AAP58494.1| conserved hypothetical protein [uncultured Acidobacteria bacterium]
Length = 413
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 114/184 (61%), Gaps = 3/184 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+NY ++A+R++ F +S +R+T+STVG++ A+ + ++ NLA+SLHA
Sbjct: 216 MGEPLHNYEETMKALRVLADEHGFAMSARRMTLSTVGVLPALERLATEPLMPNLAISLHA 275
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+D R ++P R + L++L++A + + +++I EY++L VND + A +L KLL
Sbjct: 276 TTEDQRDLLVPINRKYGLKELLDACRRFPLKRRERITFEYVLLREVNDTPEDARRLVKLL 335
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNL+P N + F SDD+V+SF +IL + I +VRK G+DI ACGQ
Sbjct: 336 HGIKGKVNLLPLNEAAGIP-FERPSDDRVNSFARIL-ADHGIPVSVRKSRGRDIRAACGQ 393
Query: 180 LVVN 183
L+
Sbjct: 394 LITE 397
>gi|301632243|ref|XP_002945200.1| PREDICTED: ribosomal RNA large subunit methyltransferase N-like
[Xenopus (Silurana) tropicalis]
Length = 328
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYAALV A+R+M + +S +R+TVST G+V + + D P + LAVSLHA
Sbjct: 120 MGEPLQNYAALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMERLALDCP-VALAVSLHA 178
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++ R +PLE+L+ Y ++ + I EY MLDGVND+ +HA QL +L
Sbjct: 179 PNDALRDHLVSLNRKYPLEELLQTCVRYLDHAPRDFITFEYCMLDGVNDQPEHAQQLIQL 238
Query: 119 LE-----TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP R S +VS F ++L + I TTVRK G DI
Sbjct: 239 VRGHAQGKVWCKFNLIPFNPFPESGLVR-SPPQRVSGFARLLSDA-GIVTTVRKTRGDDI 296
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL + D+ A
Sbjct: 297 DAACGQLAGEVKDRTRA 313
>gi|313899948|ref|ZP_07833450.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
gi|346313780|ref|ZP_08855307.1| cfr family radical SAM enzyme [Erysipelotrichaceae bacterium
2_2_44A]
gi|373122012|ref|ZP_09535879.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 21_3]
gi|422329434|ref|ZP_16410459.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 6_1_45]
gi|312955256|gb|EFR36922.1| 23S rRNA m2A2503 methyltransferase [Clostridium sp. HGF2]
gi|345907635|gb|EGX77345.1| cfr family radical SAM enzyme [Erysipelotrichaceae bacterium
2_2_44A]
gi|371656974|gb|EHO22291.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 6_1_45]
gi|371664991|gb|EHO30160.1| 23S rRNA methyltransferase [Erysipelotrichaceae bacterium 21_3]
Length = 351
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 108/184 (58%), Gaps = 7/184 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY ++ + + GL + + IT+ST G+V I +F + NLA+SLH
Sbjct: 160 GEPFDNYEHVMNFLSTVNHDRGLG--IGARHITISTCGVVPKIYEFAKEHTQYNLAISLH 217
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R ++MP RA+PLE+LM A++ Y + + +++ EYI+L GVND+++H QL KL
Sbjct: 218 APNNELRDRLMPVNRAYPLEELMEAIQYYARENNRRLTFEYILLRGVNDQKEHVAQLAKL 277
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP+N + + F+ F L +R T+RK+ G DI ACG
Sbjct: 278 LKGLNAYVNLIPYNAVDE-NGFQGVDHAHAMVFYDALMKQ-GVRCTIRKEHGADIDAACG 335
Query: 179 QLVV 182
QL V
Sbjct: 336 QLRV 339
>gi|445382482|ref|ZP_21427241.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus MTCC 5460]
gi|445395134|ref|ZP_21428971.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus MTCC 5461]
gi|444748592|gb|ELW73552.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus MTCC 5461]
gi|444748691|gb|ELW73648.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus MTCC 5460]
Length = 389
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ + S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|349574484|ref|ZP_08886432.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
gi|348013953|gb|EGY52849.1| cfr family radical SAM enzyme [Neisseria shayeganii 871]
Length = 363
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+ IM + +S +R+TVST G+V +++ D+P + LAVSLHA
Sbjct: 163 MGEPLANYDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEDMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR +I+P + +PL +LM A + Y K + + EY+MLDGVND +HA +L L
Sbjct: 222 SNDAVRNEIVPLNKKYPLTELMAACRRYLAKAPRDFVTFEYVMLDGVNDRPEHARELLTL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP S ++ SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VRDVPCKFNLIPFNPFPH-SGYQRSSNENIRIFRDILQQA-GLVVTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVRDK 348
>gi|383784040|ref|YP_005468608.1| radical SAM family protein [Leptospirillum ferrooxidans C2-3]
gi|383082951|dbj|BAM06478.1| putative radical SAM family protein [Leptospirillum ferrooxidans
C2-3]
Length = 372
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 114/198 (57%), Gaps = 5/198 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKF-HSDLPGLNLAVSLH 58
MGEPL N ++ ++R +T +SP+RITVST G+ I + S +P +NLAVSL
Sbjct: 174 MGEPLANLDQVINSIRTLTSSDGLGMSPRRITVSTSGLPSKIIELGQSGIP-VNLAVSLT 232
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
A R ++MP R +P+ +++A+++ +Q++ EY++L GVND + A +L +L
Sbjct: 233 AADDPTREKLMPINRHYPIRAILDAIRQLPLKKRQRVTFEYVLLSGVNDRPEDAKKLARL 292
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L F+ VNLIPFNP S F + S D V FQKIL + TT+R+ G DI GACG
Sbjct: 293 LAPFKSKVNLIPFNPYEG-SPFVSPSKDDVLLFQKILLEKM-VATTIRQSRGDDILGACG 350
Query: 179 QLVVNLPDKISAKSTPPV 196
QL I S PV
Sbjct: 351 QLAWEKKTAIKETSWNPV 368
>gi|329897039|ref|ZP_08271811.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
gi|328921479|gb|EGG28865.1| Radical SAM superfamily protein [gamma proteobacterium IMCC3088]
Length = 383
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 122/191 (63%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A+V A+ +M L + +S +R+T+ST G+V A++K +++ ++LAVSLHA
Sbjct: 175 MGEPLLNFDAVVSAMDLMMDDLAYGLSKRRVTLSTSGVVPALDKL-AEVSCVSLAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R Q++P + +P+ +L+ + + Y Q + ++ + IEY ++ GVND+ +HA +L
Sbjct: 234 PNDALRNQLVPINKKYPIAELLASAQRYLDAQNDRKRVVTIEYTLIAGVNDQPEHARELA 293
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ F +NLIPFN S ++ S + VS F ++L + I TVR G DIS A
Sbjct: 294 VLLKNFPCKINLIPFNAFPG-SSYQRPSGNAVSRFWQVLIDAGFI-VTVRTTRGDDISAA 351
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 352 CGQLVGDVVDR 362
>gi|304415499|ref|ZP_07396137.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
gi|304282648|gb|EFL91173.1| hypothetical protein in radical SAM superfamily [Candidatus
Regiella insecticola LSR1]
Length = 378
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 171 MGEPLLNLNNVVPAMDIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P R + ++ + A++ Y S Q ++ +EY+MLD +ND + AHQL
Sbjct: 230 PTDEIRDEIVPINRKYNIDTFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSPEQAHQLA 289
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 290 ECLKNTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLI-QYGFTTIVRKTRGDDIDAA 347
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 348 CGQLAGEVIDR 358
>gi|261880280|ref|ZP_06006707.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
gi|270332967|gb|EFA43753.1| cfr family radical SAM enzyme [Prevotella bergensis DSM 17361]
Length = 359
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP++N ++ I+T F SPKRITVST+GI + + +F + +LAVSLH+P
Sbjct: 171 GEPMDNLDNVLRTTEILTAPYAFAWSPKRITVSTIGIKNELKRFIEE-SDCHLAVSLHSP 229
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+ R ++MP R P+E++++ L+ Y + Q+++ EYI+ +G+ND ++HA + +LLE
Sbjct: 230 FHEQRAELMPIERTTPVEEIVDLLRNYDFSHQRRLSFEYIVFEGINDSKEHARAIVRLLE 289
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLI F+PI V+ + D ++ SF+ L ++ I TT+R GQDI ACG L
Sbjct: 290 GLFCRVNLIRFHPIPHVN-LHGADDKQMESFRNYLT-THGIHTTIRASRGQDILAACGLL 347
>gi|71065245|ref|YP_263972.1| hypothetical protein Psyc_0679 [Psychrobacter arcticus 273-4]
gi|123748144|sp|Q4FTX0.1|RLMN_PSYA2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|71038230|gb|AAZ18538.1| 23S rRNA m(2)A-2503 methyltransferase [Psychrobacter arcticus
273-4]
Length = 409
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 122/208 (58%), Gaps = 10/208 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M + + +S +R+T+ST G+V + + +L + LA+SLHA
Sbjct: 204 MGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAKEL-DVALAISLHA 262
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY----QKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
P ++R +++P + +PLE+LM A + Y ++ + IEY+MLDGVND +HA QL
Sbjct: 263 PNDELRNELVPINKKYPLEQLMAAARNYVFDVNPRHKKHVTIEYVMLDGVNDSNEHAEQL 322
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL +NLIPFNP + + SS++++ +F IL + T+R+ G DI
Sbjct: 323 VALLGDLPSKINLIPFNPFPH-ANYDKSSNNRIHAFSNILSEA-GFVCTIRQTRGDDIDA 380
Query: 176 ACGQLVVNLPDKI--SAKSTPPVTDIED 201
ACGQLV + D+ SA + D E+
Sbjct: 381 ACGQLVGQVADRTRRSAAWQQSIKDREN 408
>gi|55823590|ref|YP_142031.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
thermophilus CNRZ1066]
gi|116628382|ref|YP_821001.1| hypothetical protein STER_1660 [Streptococcus thermophilus LMD-9]
gi|81558991|sp|Q5LY98.1|RLMN_STRT1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|122267023|sp|Q03J17.1|RLMN_STRTD RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|55739575|gb|AAV63216.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
gi|116101659|gb|ABJ66805.1| Predicted Fe-S-cluster redox enzyme [Streptococcus thermophilus
LMD-9]
Length = 389
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 114/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R + GL + + ITVST G+ I +F ++ +NLAVSL
Sbjct: 185 IGEPFDNYDNVLRFLRTINNDNGLA--IGARHITVSTSGLAPKIKEFANEGVQVNLAVSL 242
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IM R+FPLEKL A++ Y + + +++ EYIML+ VND ++A +L
Sbjct: 243 HAPNNDLRSSIMRINRSFPLEKLFEAIEYYIQTTNRRVTFEYIMLNEVNDHPENAQELAD 302
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L + + + +NLIP+NP+ + S+ ++V++F +L+ + + VR++ G DI
Sbjct: 303 LTKKIRKLSYINLIPYNPVSEHDHYSRSTKERVAAFYDVLKKN-GVNCVVRQEHGTDIDA 361
Query: 176 ACGQLVVN 183
ACGQL N
Sbjct: 362 ACGQLRSN 369
>gi|94311047|ref|YP_584257.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
gi|123260051|sp|Q1LLI8.1|RLMN_RALME RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|93354899|gb|ABF08988.1| Radical SAM enzyme, Cfr family [Cupriavidus metallidurans CH34]
Length = 384
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 121/209 (57%), Gaps = 14/209 (6%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DLP + LAVSLHA
Sbjct: 169 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLP-VALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
+R ++P R +PL +LM A + Y + + + I EY MLDGVND +HA +L KL
Sbjct: 228 SNDALRDVLVPLNRKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP S + S+++++ F ++L + I TT+RK G DI ACG
Sbjct: 288 VADVPCKFNLIPFNPFPE-SGLKRSNNEQIRRFAQVLMDA-GIVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDKIS-------AKSTP--PVTD 198
QL + D+ K TP PV D
Sbjct: 346 QLAGEVMDRTRLAERGKFGKITPLVPVAD 374
>gi|256830852|ref|YP_003159580.1| radical SAM protein [Desulfomicrobium baculatum DSM 4028]
gi|256580028|gb|ACU91164.1| radical SAM enzyme, Cfr family [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 122/197 (61%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNL-AVS 56
MGEPL N+ + +++I++ GL F S +RIT+ST I ++ F + GL L A+S
Sbjct: 161 MGEPLTNWDEVRRSLQILSNAEGLEF--SRRRITLSTCAIKGKMDVF--GIEGLALPAIS 216
Query: 57 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
LHAP Q++R +MP A +P+E+L+ AL+ + +++++ IEYI++ GVND QHA QL
Sbjct: 217 LHAPTQEIRESLMPGAARWPIEELIAALQGMELKARERVTIEYILIKGVNDSLQHARQLV 276
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL + +NLI +NP G ++ + V +F+++LR T+RK GQDI+ A
Sbjct: 277 RLLSHLKCKINLIAYNP-GPGIEYAAPAPGDVLAFEELLR-KKGFTVTLRKSKGQDIAAA 334
Query: 177 CGQLVVNLPDKISAKST 193
CGQL ++++ ++
Sbjct: 335 CGQLKTEAQGRMNSTTS 351
>gi|254513997|ref|ZP_05126058.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
gi|219676240|gb|EED32605.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR5-3]
Length = 381
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 120/191 (62%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ +M L + +S +R+T+ST G+V A++K +++ +LAVSLHA
Sbjct: 175 MGEPLLNFDNVVTAMDLMMDDLGYGISKRRVTLSTSGVVPALDKL-AEVSEASLAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R Q++P R +P+ +L+++ + Y QK+ ++ + IEY ++ GVND+ A +L
Sbjct: 234 PNDELRNQLVPVNRRYPIAQLLDSARRYIDAQKDKKRVVTIEYTLMAGVNDQPDQARELA 293
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL F +NLIPFNP + S + S + VS F ++L + + TVR G DI A
Sbjct: 294 TLLADFPCKINLIPFNPFPN-SGYERPSGNAVSRFWQVLVDAGFV-VTVRTTRGDDIDAA 351
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 352 CGQLVGDVVDR 362
>gi|407684519|ref|YP_006799693.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407688447|ref|YP_006803620.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407700813|ref|YP_006825600.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407246130|gb|AFT75316.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'English Channel 673']
gi|407249960|gb|AFT79145.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Black Sea 11']
gi|407291827|gb|AFT96139.1| ribosomal RNA large subunit methyltransferase N [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 372
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 165 MGEPLLNLKNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + ++ Y K +Q ++ +EY+ML +ND + AHQL
Sbjct: 224 PTDELRNEIVPINKKYNIEAFLAGVRRYLAKSKANQGRVTVEYVMLSNINDSTEQAHQLA 283
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP S + SS+ ++ F K+L Y T VRK G DI A
Sbjct: 284 KVLKDTPSKINLIPFNPYPG-SPYTCSSNSRIDRFAKVLM-EYGFTTVVRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 342 CGQLVGDVVDR 352
>gi|386361418|ref|YP_006059663.1| 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin
oxidoreductase subunit CD [Thermus thermophilus JL-18]
gi|383510445|gb|AFH39877.1| 23S rRNA m2A2503 methyltransferase [Thermus thermophilus JL-18]
Length = 355
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 110/195 (56%), Gaps = 3/195 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +++AVRIM +SP+R+T+STVGI I + + G+ LA+SLHA
Sbjct: 158 MGEPLLNLRNVLKAVRIMLHKKALALSPRRVTLSTVGIPKGIYRLAEEDLGVRLALSLHA 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R I+P A +P+ ++M A++ Y +++++ EY +L GVND A L KLL
Sbjct: 218 PDDETRKAIIPTAHRYPIAEIMEAVRHYYAKTKRRVTFEYTLLKGVNDHLWQARLLAKLL 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIPFNP T ++ +++ R + ++R GQD+ ACGQ
Sbjct: 278 KGLSAHVNLIPFNPWEGAPVAGTPRAAILAFAEELKR--LGVPVSIRWSRGQDVGAACGQ 335
Query: 180 LVVNLPDKISAKSTP 194
L + +P ++ + P
Sbjct: 336 LALKVPKPLTFRPLP 350
>gi|269926508|ref|YP_003323131.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
gi|269790168|gb|ACZ42309.1| radical SAM enzyme, Cfr family [Thermobaculum terrenum ATCC
BAA-798]
Length = 371
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 109/183 (59%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N A+ +V + TG+ F S +RIT+ST G+VH I++F +NLA+SL
Sbjct: 178 MGEPLANLDAVWRSVENLHEPTGMNF--SARRITISTAGLVHQIDRFPPTDLQVNLAISL 235
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R IMP R +P+ +L+ + K Y + + ++I EY+++ G N ++HA L
Sbjct: 236 HAPNDDLRTSIMPINRRWPISELIASAKRYVERTHRRITFEYVLIAGCNSSKEHARDLSN 295
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIP N + S F S ++V++F+ IL S I TVR + G DI AC
Sbjct: 296 LLRGLLCHVNLIPLNRVPG-SPFEPPSTEEVNTFRDILL-SAGIPCTVRLERGADILAAC 353
Query: 178 GQL 180
GQL
Sbjct: 354 GQL 356
>gi|269140148|ref|YP_003296849.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|387868669|ref|YP_005700138.1| ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
FL6-60]
gi|267985809|gb|ACY85638.1| hypothetical protein ETAE_2805 [Edwardsiella tarda EIB202]
gi|304559982|gb|ADM42646.1| Ribosomal RNA large subunit methyltransferase N [Edwardsiella tarda
FL6-60]
Length = 411
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 205 MGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 263
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + ++ + +++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 264 PNDAIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 323
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP + F SS+ ++ F K+L Y VRK G DI A
Sbjct: 324 ECLKDTPCKINLIPWNPFPG-APFGRSSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 381
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 382 CGQLAGEVIDR 392
>gi|340357579|ref|ZP_08680192.1| cfr family radical SAM enzyme [Sporosarcina newyorkensis 2681]
gi|339617155|gb|EGQ21783.1| cfr family radical SAM enzyme [Sporosarcina newyorkensis 2681]
Length = 358
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L+ + I+ + + ITVST G+ I +F + +NLAVSLHA
Sbjct: 162 IGEPFDNYTNLMNFLHIVNDQKGLSIGARHITVSTSGLTEKIKEFAEENIQINLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IM +AFP+EKLM+A+ Y + + ++I EYI+L VND + A +LG+LL
Sbjct: 222 PNNELRSKIMKINKAFPIEKLMDAINYYLETTNRRITFEYILLRDVNDHVKEAEELGRLL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+NP+ Q++ S + SF + L+ I VR + G DI AC
Sbjct: 282 ADKRHLSYVNLIPYNPVDEHGQYQRSEPQAIKSFYEALKRK-GINCGVRWENGTDIDAAC 340
Query: 178 GQL 180
GQL
Sbjct: 341 GQL 343
>gi|149197716|ref|ZP_01874766.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
gi|149139286|gb|EDM27689.1| hypothetical protein LNTAR_20823 [Lentisphaera araneosa HTCC2155]
Length = 343
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 108/183 (59%), Gaps = 2/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +++++ IM + +S KR+TVST+GI I K P +NLA+SLHA
Sbjct: 157 MGEPLRNTDNVLKSLEIMLSSAYMGLSSKRVTVSTIGITDNITKLRHSFPEVNLALSLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
VR +MP + FP+E + L Q+ + + I+Y+++ +ND + A +L L
Sbjct: 217 SNDQVRDILMPINKTFPMETIKETLLSAQELASGDLMIQYLLIKDLNDSPEQAQELAAFL 276
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ ++NLIP+N + ++ SS++K+S+FQ +L+ S + + T R +G+DI ACGQ
Sbjct: 277 KGINCIINLIPYNDSMGMGNWKCSSEEKMSAFQDVLQES-DFQVTRRHSLGRDIDAACGQ 335
Query: 180 LVV 182
L
Sbjct: 336 LAA 338
>gi|160900454|ref|YP_001566036.1| radical SAM protein [Delftia acidovorans SPH-1]
gi|160366038|gb|ABX37651.1| radical SAM enzyme, Cfr family [Delftia acidovorans SPH-1]
Length = 397
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R M + +S +R+TVST G+V I++ D + +AVSLHA
Sbjct: 188 MGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-AVAMAVSLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L
Sbjct: 247 PNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIEL 306
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP + R+ + +V+ F +L + I TTVRK G DI
Sbjct: 307 VRARGDGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTTVRKTRGDDI 364
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 365 DAACGQLAGDVKDRTRA 381
>gi|226328008|ref|ZP_03803526.1| hypothetical protein PROPEN_01899 [Proteus penneri ATCC 35198]
gi|225203712|gb|EEG86066.1| 23S rRNA m2A2503 methyltransferase [Proteus penneri ATCC 35198]
Length = 357
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+TVST G+V A++K +D + LA+SLHA
Sbjct: 151 MGEPLLNLNNVIPALEIMMDDFGFGLSKRRVTVSTSGVVPALDKL-ADAVDVALAISLHA 209
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +I+P + + + + ++ Y S Q ++ +EY+MLD +ND + AHQL
Sbjct: 210 PTDDIRDEIVPINKKYNIAMFLEGVRRYIAKSNANQGRVTVEYVMLDHINDSTEQAHQLA 269
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 270 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 327
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 328 CGQLAGDVIDR 338
>gi|440231978|ref|YP_007345771.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
gi|440053683|gb|AGB83586.1| 23S rRNA m(2)A-2503 methyltransferase [Serratia marcescens FGI94]
Length = 398
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P VR +I+P R + +E + ++ Y S Q ++ +EY+MLD VND AHQL
Sbjct: 251 PNDAVRDEIVPINRKYNIEAFLAGVRRYLAKSNANQGRVTVEYVMLDHVNDSTDDAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|261401249|ref|ZP_05987374.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
gi|269208732|gb|EEZ75187.1| radical SAM enzyme, Cfr family [Neisseria lactamica ATCC 23970]
Length = 364
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V ++ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTSLSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHAH+L L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDKAQHAHELINL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS + + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSKENIRVFKDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|120554052|ref|YP_958403.1| radical SAM protein [Marinobacter aquaeolei VT8]
gi|387814569|ref|YP_005430055.1| Fe-S protein [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|205829787|sp|A1TZP7.1|RLMN_MARAV RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120323901|gb|ABM18216.1| 23S rRNA m(2)A-2503 methyltransferase [Marinobacter aquaeolei VT8]
gi|381339585|emb|CCG95632.1| putative Fe-S containing enzyme (yfgB) [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 369
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 118/190 (62%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+A+ +M L + +S +R+T+ST G+V A+++ ++ ++LA+SLHA
Sbjct: 168 MGEPLLNFENVVDAMNLMMEDLAYGISKRRVTLSTSGVVPALDRL-GEVTDVSLAISLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R Q++P + +P+ +L+ A + Y ++K IEY +++GVND+ +HA +L
Sbjct: 227 PNDELRNQLVPLNKKYPIAELLAATRRYLSRLPDKRKATIEYTVIEGVNDQPEHARELVV 286
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ +NLIPFNP S FR S + FQ +L + + TT+R G DI AC
Sbjct: 287 LLKGLPCKINLIPFNPFPE-SDFRRPSMNATRRFQTVLNEAGYV-TTIRTTRGDDIDAAC 344
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 345 GQLVGRVEDR 354
>gi|429741487|ref|ZP_19275145.1| 23S rRNA methyltransferase [Porphyromonas catoniae F0037]
gi|429158593|gb|EKY01132.1| 23S rRNA methyltransferase [Porphyromonas catoniae F0037]
Length = 352
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 6/182 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQV--SPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
MGEPL+N A ++ ++ +MT P+ + SPKRIT+STVG+ + +F S+ +LAVSLH
Sbjct: 160 MGEPLDNAAHVLSSISVMTA-PWGLGWSPKRITLSTVGVRKGLERFLSETT-CHLAVSLH 217
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P + R +MPA PLE+ + ++E Q+++ EYI+ DGVND +HA +L +L
Sbjct: 218 NPFHEGRLALMPAEGGMPLEETLRMIREADFTGQRRVSFEYIVFDGVNDSREHAEELARL 277
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L +NLIPF+ I V R S + F+ L S TT+R G+DIS ACG
Sbjct: 278 LRGIPCRINLIPFHQIPDVP-LRPLSAQGMELFKSYLE-SRGYVTTIRTSRGEDISAACG 335
Query: 179 QL 180
L
Sbjct: 336 ML 337
>gi|157364703|ref|YP_001471470.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
lettingae TMO]
gi|205829915|sp|A8F8C2.1|RLMN_THELT RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|157315307|gb|ABV34406.1| radical SAM enzyme, Cfr family [Thermotoga lettingae TMO]
Length = 343
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++++++I+ + + +R+T+STVGI I K + LNLA+SLHA
Sbjct: 156 MGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ R QI+P R + +++++NA K YQ+ S +++ IEYI++ ND ++ A +L KLL
Sbjct: 216 STNEKRDQIIPINRKYSIQEIINAAKNYQERSDRRLTIEYILIKEFNDFDEDARKLAKLL 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+V VNLIP N + S F + K++ F++IL S I +R + G DI ACGQ
Sbjct: 276 NGLKVFVNLIPVN--STFSNFEKPAKWKINRFKEILINS-GIEAEIRYEKGADIEAACGQ 332
Query: 180 L-VVNLPDK 187
L + NL K
Sbjct: 333 LRIRNLLSK 341
>gi|126733857|ref|ZP_01749604.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
gi|126716723|gb|EBA13587.1| hypothetical protein RCCS2_06859 [Roseobacter sp. CCS2]
Length = 391
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ + +A++I M +S +RIT+ST G+V I + ++ G LAVS HA
Sbjct: 193 MGEPLYNFENVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAQEI-GCQLAVSFHA 251
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
DVR +++P + +P+ L++AL+EY K ++ ++I EY+MLDGVND ++ AH+L KL
Sbjct: 252 TTNDVRDRLVPINKRWPISDLLDALREYPKVSNSERITFEYVMLDGVNDSDEDAHRLIKL 311
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+E +NLIPFN + ++ SS++++ F +I+ + + VRK G+DI ACG
Sbjct: 312 IEGIPAKINLIPFNEWPG-APYKRSSNNRIRKFSEIIYQA-GYASPVRKPRGEDIMAACG 369
Query: 179 QL 180
QL
Sbjct: 370 QL 371
>gi|403378882|ref|ZP_10920939.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
JC66]
Length = 349
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP NY A++ ++IM GL + + ITVST GIV I +F + +NLA+S+
Sbjct: 160 IGEPFENYEAMISFLKIMIHDKGL--NIGQRHITVSTSGIVPNIYRFTEERTQINLAISI 217
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R ++MP R +P L+ A K Y + + +++ EY ++ GVND+ +HA +L +
Sbjct: 218 HAPNDALRSKLMPVNRRYPFADLIAACKHYVEVTGRRLTFEYALMGGVNDQPEHAEELAQ 277
Query: 118 LLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L+ + VNLIP N + + RT DD + +FQ+IL + I TT+R++ G DI+ A
Sbjct: 278 VLKEIPLCHVNLIPVNFVVERNFVRTERDD-IFTFQRILE-KHKITTTIRREQGSDIAAA 335
Query: 177 CGQL 180
CGQL
Sbjct: 336 CGQL 339
>gi|260913157|ref|ZP_05919639.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
gi|260632744|gb|EEX50913.1| cfr family radical SAM enzyme [Pasteurella dagmatis ATCC 43325]
Length = 391
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LA+SLHA
Sbjct: 185 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAISLHA 243
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ L++++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 244 PNDELRDEIVPINKKYNIKALIDSVNRYLSVSNANHGKVTIEYVMLDHVNDSVEHAHQLA 303
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y VRK G DI A
Sbjct: 304 QVLKNTPSKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGFTVIVRKTRGDDIDAA 361
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 362 CGQLAGDVIDR 372
>gi|107029007|ref|YP_626102.1| hypothetical protein Bcen_6265 [Burkholderia cenocepacia AU 1054]
gi|116689835|ref|YP_835458.1| radical SAM protein [Burkholderia cenocepacia HI2424]
gi|170733174|ref|YP_001765121.1| radical SAM protein [Burkholderia cenocepacia MC0-3]
gi|123179922|sp|Q1BGX6.1|RLMN_BURCA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829678|sp|B1JT94.1|RLMN_BURCC RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829679|sp|A0K7T8.1|RLMN_BURCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|105898171|gb|ABF81129.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia AU
1054]
gi|116647924|gb|ABK08565.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia cenocepacia
HI2424]
gi|169816416|gb|ACA90999.1| radical SAM enzyme, Cfr family [Burkholderia cenocepacia MC0-3]
Length = 379
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 234 PNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAV 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLIR-SKPEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|333913248|ref|YP_004486980.1| ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
gi|333743448|gb|AEF88625.1| Ribosomal RNA large subunit methyltransferase N [Delftia sp. Cs1-4]
Length = 397
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R M + +S +R+TVST G+V I++ D + +AVSLHA
Sbjct: 188 MGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-AVAMAVSLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L
Sbjct: 247 PNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIEL 306
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP + R+ + +V+ F +L + I TTVRK G DI
Sbjct: 307 VRARGDGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTTVRKTRGDDI 364
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 365 DAACGQLAGDVKDRTRA 381
>gi|147675306|ref|YP_001216242.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
O395]
gi|227117131|ref|YP_002819027.1| hypothetical protein VC395_0774 [Vibrio cholerae O395]
gi|262168795|ref|ZP_06036490.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
gi|205829925|sp|A5F3F8.1|RLMN_VIBC3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146317189|gb|ABQ21728.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012581|gb|ACP08791.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262022913|gb|EEY41619.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC27]
Length = 373
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELLKRTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|398795004|ref|ZP_10554946.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
gi|398797058|ref|ZP_10556384.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398103873|gb|EJL94034.1| 23S rRNA methyltransferase [Pantoea sp. GM01]
gi|398207283|gb|EJM94033.1| 23S rRNA methyltransferase [Pantoea sp. YR343]
Length = 389
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 183 MGEPLLNLNNVVPAMDIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A+K Y S Q ++ IEY+MLD VND +AH+L
Sbjct: 242 PNDAIRDEIVPINKKYNIETFLAAVKRYIGKSNANQGRVTIEYVMLDHVNDSTDNAHELA 301
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 302 ALLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTTIVRKTRGDDIDAA 359
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 360 CGQLAGDVIDR 370
>gi|212710618|ref|ZP_03318746.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|422017490|ref|ZP_16364055.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
gi|212686699|gb|EEB46227.1| hypothetical protein PROVALCAL_01684 [Providencia alcalifaciens DSM
30120]
gi|414105640|gb|EKT67197.1| ribosomal RNA large subunit methyltransferase N [Providencia
alcalifaciens Dmel2]
Length = 399
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 193 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTISTSGVVPALDKL-GDMIDVALAISLHA 251
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P DVR +I+P + + +E + ++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 252 PTDDVRDEIVPINKKYNIETFLASVNRYLTKSNANAGRVTVEYVMLDHINDSVEQAHQLA 311
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 312 ECLKNTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 369
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 370 CGQLAGDVIDR 380
>gi|430377501|ref|ZP_19431634.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
gi|429540638|gb|ELA08667.1| Cfr family radical SAM protein [Moraxella macacae 0408225]
Length = 402
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 115/192 (59%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M F +S +R+T+ST G+V + D+ + LA+SLHA
Sbjct: 194 MGEPLLNYEPVVASMSLMLDDFGFGLSKRRVTLSTSGVVPKMYDLAKDI-DVALAISLHA 252
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQK--IFIEYIMLDGVNDEEQHAHQL 115
P +R +++P + +PL +L+ A K Y +N + K + IEY+ML VND ++HAHQL
Sbjct: 253 PNDKLRNELVPINKKYPLAELIKAAKAYVYDENPRHKKHVTIEYVMLKDVNDSDEHAHQL 312
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ +NLIPFNP + + SS++++ +F IL + T+R+ G DI
Sbjct: 313 AVLLQDLPSKINLIPFNPFAH-APYERSSNNRIHAFSGILNNA-GFVCTIRQTRGDDIDA 370
Query: 176 ACGQLVVNLPDK 187
ACGQLV + DK
Sbjct: 371 ACGQLVGQVADK 382
>gi|37678948|ref|NP_933557.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
YJ016]
gi|81758246|sp|Q7MNF3.1|RLMN_VIBVY RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|37197690|dbj|BAC93528.1| predicted Fe-S-cluster redox enzyme [Vibrio vulnificus YJ016]
Length = 374
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 QLMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|319892212|ref|YP_004149087.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|386319519|ref|YP_006015682.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
ED99]
gi|317161908|gb|ADV05451.1| Ribosomal RNA large subunit methyltransferase N [Staphylococcus
pseudintermedius HKU10-03]
gi|323464690|gb|ADX76843.1| radical SAM enzyme, Cfr family [Staphylococcus pseudintermedius
ED99]
Length = 364
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ ++I+ + + ITVST GIV I F + +N AVSLHA
Sbjct: 176 IGEPFENYDEMMDFLKIVNDDHSLNIGARHITVSTSGIVPRIYDFADESLQINFAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R ++MP RA+ ++KLM A++ YQ+ ++++I EY + GVND+ +HA +L KL+
Sbjct: 236 ANNEIRSKLMPINRAYDVDKLMEAIQYYQEKTKRRITFEYGLFGGVNDQLEHARELAKLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +T DD + F+K L+ I T+R++ G DI ACGQ
Sbjct: 296 KPLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-KLGINATIRREQGADIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|149375014|ref|ZP_01892787.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
gi|149360903|gb|EDM49354.1| predicted Fe-S-cluster redox enzyme [Marinobacter algicola DG893]
Length = 370
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+A+ +M L + +S +R+TVST G+V A++K ++ ++LA+SLHA
Sbjct: 169 MGEPLLNFDNVVDAMNLMMEDLAYGISKRRVTVSTSGVVPALDKL-GEVTDVSLAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R Q++P + +P+ +L+ A + Y ++K IEY +++GVND+ +HA +L
Sbjct: 228 PNDELRNQLVPLNKKYPIAELLAATRRYLARLPDKRKATIEYTVIEGVNDQPEHARELAV 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L +NLIPFNP S FR S + FQ +L + I TVR G DI AC
Sbjct: 288 VLRGLPCKINLIPFNPFPE-SDFRRPSMNATRRFQSVLNEAGYI-ATVRTTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 346 GQLVGMVEDR 355
>gi|335043890|ref|ZP_08536915.1| putative Fe-S-cluster redox enzyme [Methylophaga aminisulfidivorans
MP]
gi|333787136|gb|EGL53020.1| putative Fe-S-cluster redox enzyme [Methylophaga aminisulfidivorans
MP]
Length = 366
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ +V A+ +M + +S +R+T+ST GIV I+K D ++LA+SLHA
Sbjct: 165 MGEPLANYSNVVTAMNLMRDDFGYGISWRRLTLSTSGIVPMIDKLREDCH-VSLAISLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
++R QI+P + +P+ +L+ A K Y Q++ I +EY+MLDG+ND Q A L +L
Sbjct: 224 ANDELRDQIVPINQKYPIAELLAACKRYVVGQQRRHITVEYVMLDGINDSIQDAKDLVRL 283
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ +NLIPFNP + ++ SS +++ FQ+ L + TVRK G DI ACG
Sbjct: 284 LKGLPNKINLIPFNPFPG-THYKCSSRNQIVRFQQYLIDQ-GLVATVRKTRGDDIVAACG 341
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 342 QLAGEVQDK 350
>gi|297182513|gb|ADI18675.1| predicted Fe-S cluster redox enzyme [uncultured Acidobacteria
bacterium HF4000_26D02]
Length = 384
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 111/189 (58%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGL-NLAVSLH 58
MGEPL+NY A ++A+RI+ ++P+R+T+ST+GI+ A+ + + P L NLA+SLH
Sbjct: 187 MGEPLHNYDATMKALRILAAPAGLALTPRRVTLSTIGILPALERLAHE-PWLPNLAISLH 245
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
A +R +++P +R L L + + + +I EY++L GVND E A +L KL
Sbjct: 246 ATTDRLRHELIPTSRTQRLGDLAAVCRRFPVKHRDRITFEYVLLAGVNDTEADATRLPKL 305
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L + VNLIP N + F SD +V F + L S +R +VRK G+DI ACG
Sbjct: 306 LRGLRAKVNLIPLNEAPGIP-FSRPSDRRVDWFARSL-ASAGLRVSVRKSRGRDIRAACG 363
Query: 179 QLVVNLPDK 187
QL+V P +
Sbjct: 364 QLIVEGPRR 372
>gi|206560249|ref|YP_002231013.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
gi|421866980|ref|ZP_16298642.1| Ribosomal RNA large subunit methyltransferase N [Burkholderia
cenocepacia H111]
gi|444359172|ref|ZP_21160500.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia BC7]
gi|444370037|ref|ZP_21169731.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia
K56-2Valvano]
gi|254807159|sp|B4EAX1.1|RLMN_BURCJ RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|198036290|emb|CAR52186.1| radical SAM superfamily protein [Burkholderia cenocepacia J2315]
gi|358073144|emb|CCE49520.1| Ribosomal RNA large subunit methyltransferase N [Burkholderia
cenocepacia H111]
gi|443598135|gb|ELT66520.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia
K56-2Valvano]
gi|443602509|gb|ELT70584.1| 23S rRNA m2A2503 methyltransferase [Burkholderia cenocepacia BC7]
Length = 379
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 234 PNDALRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAV 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLIR-SKPEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|117919675|ref|YP_868867.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
ANA-3]
gi|205829885|sp|A0KUJ2.1|RLMN_SHESA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117612007|gb|ABK47461.1| radical SAM enzyme, Cfr family [Shewanella sp. ANA-3]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 QLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|114046802|ref|YP_737352.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-7]
gi|123326715|sp|Q0HX60.1|RLMN_SHESR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113888244|gb|ABI42295.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-7]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 QLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|258619955|ref|ZP_05714995.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258627187|ref|ZP_05721975.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580489|gb|EEW05450.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258587688|gb|EEW12397.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 396
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 190 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 248
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +++ + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 249 PNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 308
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 309 ELMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 366
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 367 CGQLVGDVIDR 377
>gi|418102483|ref|ZP_12739559.1| radical SAM superfamily protein [Streptococcus pneumoniae NP070]
gi|419475160|ref|ZP_14015001.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA14688]
gi|419486270|ref|ZP_14026037.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA44128]
gi|421208599|ref|ZP_15665623.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070005]
gi|421224623|ref|ZP_15681368.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070768]
gi|353776649|gb|EHD57124.1| radical SAM superfamily protein [Streptococcus pneumoniae NP070]
gi|379561498|gb|EHZ26515.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA14688]
gi|379589179|gb|EHZ54019.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA44128]
gi|395576056|gb|EJG36615.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070005]
gi|395590954|gb|EJG51253.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070768]
Length = 361
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|350546572|ref|ZP_08915951.1| hypothetical protein GUU_02007 [Mycoplasma iowae 695]
gi|349503870|gb|EGZ31434.1| hypothetical protein GUU_02007 [Mycoplasma iowae 695]
Length = 355
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 114/183 (62%), Gaps = 9/183 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ LV+ ++++ GL + ++ITVST G+VH I ++ +NLA+SL
Sbjct: 171 IGEPFDNFNNLVQFMKVIKEQKGLG--IGGRKITVSTCGLVHRIKEWADLNNQVNLAISL 228
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA ++R +IMP AF +EKL+ A+ Y + ++I IEYIM+ +ND+++HA++L +
Sbjct: 229 HASNNEIRNKIMPINAAFNIEKLLEAIDYYLNKTNRRITIEYIMIKDLNDKKEHAYELIE 288
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + V +NLIP+NP+ S R+ +K F IL+ S I T+R++ G I AC
Sbjct: 289 MFKNRLVYINLIPYNPVFENSYARS---EKCKEFYDILKNS-GITCTIRQEKGSSIDAAC 344
Query: 178 GQL 180
GQL
Sbjct: 345 GQL 347
>gi|328951573|ref|YP_004368908.1| ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
gi|328451897|gb|AEB12798.1| Ribosomal RNA large subunit methyltransferase N [Marinithermus
hydrothermalis DSM 14884]
Length = 353
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 3/186 (1%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +++AVR M +SP+RIT+STVGI I + + G+ LA+SLHA
Sbjct: 170 MGEPLLNLTNVLKAVRRMIHKQALAMSPRRITLSTVGIPRGIYRLAEEDVGVKLALSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R +I+P A + +E++M+A++ Y + +++++ +EY +L GVND A L K
Sbjct: 230 PDDETRRRIIPTAHRYAIEEIMDAVRHYYRRTKRRVTLEYTLLRGVNDHLWQAKMLAKHT 289
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VNLIPFNP SS +++ F +L + I +VR G+D+ ACGQ
Sbjct: 290 RGLTAHVNLIPFNPWEGAPH-EGSSREQIRRFAAVLEAA-GIPVSVRWSRGRDVGAACGQ 347
Query: 180 LVVNLP 185
L + P
Sbjct: 348 LALRTP 353
>gi|317049139|ref|YP_004116787.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
gi|316950756|gb|ADU70231.1| radical SAM enzyme, Cfr family [Pantoea sp. At-9b]
Length = 389
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 183 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R I+P + + +E + A+K Y S Q ++ IEY++LD VND AHQL
Sbjct: 242 PNDKLRDDIVPINKKYNIETFLAAVKRYLAKSNANQGRVTIEYVLLDHVNDSTDDAHQLA 301
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 302 ELLKDTPSKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 359
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 360 CGQLAGDVIDR 370
>gi|121726066|ref|ZP_01679365.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|153216236|ref|ZP_01950336.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153800552|ref|ZP_01955138.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153829401|ref|ZP_01982068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080936|ref|YP_002809487.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
M66-2]
gi|229513104|ref|ZP_04402570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|229523420|ref|ZP_04412827.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229525403|ref|ZP_04414808.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229530113|ref|ZP_04419503.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|254225020|ref|ZP_04918634.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|254285475|ref|ZP_04960439.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|262192502|ref|ZP_06050653.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297581156|ref|ZP_06943080.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499110|ref|ZP_07008917.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|384423989|ref|YP_005633347.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|417820180|ref|ZP_12466794.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|417823870|ref|ZP_12470461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|419829369|ref|ZP_14352855.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|419832339|ref|ZP_14355801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|419835669|ref|ZP_14359113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|421342513|ref|ZP_15792919.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|421350580|ref|ZP_15800945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|421353555|ref|ZP_15803887.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|422306247|ref|ZP_16393429.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|422916540|ref|ZP_16950876.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|423734032|ref|ZP_17707246.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|423818058|ref|ZP_17715479.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|423850017|ref|ZP_17719268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|423879140|ref|ZP_17722873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|423950223|ref|ZP_17733663.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|423977919|ref|ZP_17737211.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|423996962|ref|ZP_17740223.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|424008316|ref|ZP_17751265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|424015666|ref|ZP_17755511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|424018605|ref|ZP_17758403.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|424589995|ref|ZP_18029441.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|424624146|ref|ZP_18062621.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|424628642|ref|ZP_18066945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|424632676|ref|ZP_18070790.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|424635765|ref|ZP_18073784.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|424639680|ref|ZP_18077574.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|424647742|ref|ZP_18085416.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|429884994|ref|ZP_19366599.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443526528|ref|ZP_21092607.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
gi|254807221|sp|C3LT10.1|RLMN_VIBCM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121631548|gb|EAX63918.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114381|gb|EAY33201.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124123841|gb|EAY42584.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|125622407|gb|EAZ50727.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|148875121|gb|EDL73256.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|150424337|gb|EDN16274.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008824|gb|ACP05036.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229333887|gb|EEN99373.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
12129(1)]
gi|229338984|gb|EEO04001.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
bv. albensis VL426]
gi|229339783|gb|EEO04798.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae TM
11079-80]
gi|229349997|gb|EEO14951.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
TMA 21]
gi|262031661|gb|EEY50248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae CT
5369-93]
gi|297534472|gb|EFH73309.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297543443|gb|EFH79493.1| cfr family radical SAM enzyme [Vibrio cholerae MAK 757]
gi|327483542|gb|AEA77949.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
LMA3984-4]
gi|340037811|gb|EGQ98785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE39]
gi|340047555|gb|EGR08478.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE48]
gi|341640017|gb|EGS64620.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02A1]
gi|395945264|gb|EJH55934.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43B1]
gi|395951025|gb|EJH61639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-25]
gi|395952680|gb|EJH63293.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-45]
gi|408015207|gb|EKG52801.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A1]
gi|408020588|gb|EKG57884.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-52A1]
gi|408026436|gb|EKG63443.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A1]
gi|408026850|gb|EKG63844.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55A1]
gi|408035820|gb|EKG72275.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1037(10)]
gi|408036323|gb|EKG72761.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A1]
gi|408058508|gb|EKG93304.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-51A1]
gi|408620954|gb|EKK93957.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-1A2]
gi|408626931|gb|EKK99760.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1035(8)]
gi|408631478|gb|EKL04018.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41B1]
gi|408636371|gb|EKL08519.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55C2]
gi|408643360|gb|EKL15085.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-60A1]
gi|408644484|gb|EKL16168.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59A1]
gi|408650983|gb|EKL22239.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A2]
gi|408661139|gb|EKL32132.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-40]
gi|408665931|gb|EKL36737.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HE-46]
gi|408854015|gb|EKL93785.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-02C1]
gi|408858423|gb|EKL98097.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46B1]
gi|408861652|gb|EKM01225.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-55B2]
gi|408865756|gb|EKM05148.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-44C1]
gi|408869611|gb|EKM08905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-59B1]
gi|429228326|gb|EKY34254.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
PS15]
gi|443455091|gb|ELT18879.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-78A1]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|418220688|ref|ZP_12847344.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47751]
gi|353877557|gb|EHE57400.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47751]
Length = 361
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|289207917|ref|YP_003459983.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
gi|288943548|gb|ADC71247.1| radical SAM enzyme, Cfr family [Thioalkalivibrio sp. K90mix]
Length = 377
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 118/194 (60%), Gaps = 10/194 (5%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKF--HSDLPGLNLAVSL 57
MGEPL NY A+V A ++MT + +S +R+T+ST G+V A+++ H+D+ LAVSL
Sbjct: 169 MGEPLANYDAVVAACQLMTDDNAYGLSRRRVTLSTSGLVPALDRLSEHTDVA---LAVSL 225
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQL 115
HAP ++R +++P R +P+ +LM + + Y + + EY++L GVND +HA+QL
Sbjct: 226 HAPNDELRDRLVPINRKYPIARLMESCRRYVEATGAHSGVTFEYVLLAGVNDRPEHANQL 285
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
+L +NLIPFNP + F ++ + F++ L+ + + TTVR+ G DI
Sbjct: 286 AGVLRGIPGKINLIPFNPFPG-APFDRPAEGDIERFERQLQKAGYV-TTVRRTRGDDIDA 343
Query: 176 ACGQLVVNLPDKIS 189
ACGQLV + D+ +
Sbjct: 344 ACGQLVGQVEDRTN 357
>gi|251797737|ref|YP_003012468.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus sp.
JDR-2]
gi|247545363|gb|ACT02382.1| radical SAM enzyme, Cfr family [Paenibacillus sp. JDR-2]
Length = 348
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +RIM GL + + ITVST GIV ++ KF + +NLA+S+H
Sbjct: 161 GEPFENYDATMTFLRIMIHEKGL--NIGQRHITVSTSGIVPSMYKFTEENTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R FP E +M A + + + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDKLRSKLMPVNRRFPFEDVMAACRNHIAKTGRRITFEYALIGGVNDQAEHAQELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + + RT +D + FQ+IL + I T+R++ G DI+ ACG
Sbjct: 279 LQGMLCHVNLIPVNHVPERNYVRTPRND-IFEFQRILEKN-KINCTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|113969569|ref|YP_733362.1| ribosomal RNA large subunit methyltransferase N [Shewanella sp.
MR-4]
gi|122943998|sp|Q0HKW2.1|RLMN_SHESM RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|113884253|gb|ABI38305.1| radical SAM enzyme, Cfr family [Shewanella sp. MR-4]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 QLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|229505629|ref|ZP_04395139.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229510699|ref|ZP_04400178.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229517821|ref|ZP_04407265.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229608647|ref|YP_002879295.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
gi|229344536|gb|EEO09510.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
RC9]
gi|229350664|gb|EEO15605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
B33]
gi|229357852|gb|EEO22769.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae BX
330286]
gi|229371302|gb|ACQ61725.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
MJ-1236]
Length = 377
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 171 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 230 PNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 289
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 290 ELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 347
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 348 CGQLVGDVIDR 358
>gi|15640776|ref|NP_230406.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121591437|ref|ZP_01678715.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153817298|ref|ZP_01969965.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153822713|ref|ZP_01975380.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153824544|ref|ZP_01977211.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254847894|ref|ZP_05237244.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744563|ref|ZP_05418514.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262161302|ref|ZP_06030413.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|360034664|ref|YP_004936427.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|379740604|ref|YP_005332573.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|417812800|ref|ZP_12459457.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|417815665|ref|ZP_12462297.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|418331799|ref|ZP_12942739.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|418336563|ref|ZP_12945461.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|418343056|ref|ZP_12949850.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|418348225|ref|ZP_12952959.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|418354747|ref|ZP_12957468.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|419825217|ref|ZP_14348722.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|421316095|ref|ZP_15766666.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|421320395|ref|ZP_15770952.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|421324391|ref|ZP_15774917.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|421328052|ref|ZP_15778566.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|421331070|ref|ZP_15781550.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|421334645|ref|ZP_15785112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|421338538|ref|ZP_15788973.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|421346881|ref|ZP_15797263.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|422890860|ref|ZP_16933268.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|422901735|ref|ZP_16937095.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|422905960|ref|ZP_16940802.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|422912555|ref|ZP_16947078.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|422921978|ref|ZP_16955180.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|422925036|ref|ZP_16958065.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|423144356|ref|ZP_17131969.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|423149008|ref|ZP_17136366.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|423152853|ref|ZP_17140050.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|423155662|ref|ZP_17142770.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|423159493|ref|ZP_17146464.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|423164180|ref|ZP_17150965.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|423730312|ref|ZP_17703629.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|423749156|ref|ZP_17711643.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|423892030|ref|ZP_17725716.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|423926805|ref|ZP_17730332.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|424001360|ref|ZP_17744448.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|424005516|ref|ZP_17748499.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|424023527|ref|ZP_17763190.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|424026330|ref|ZP_17765945.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|424585655|ref|ZP_18025248.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|424594351|ref|ZP_18033688.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|424598216|ref|ZP_18037413.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|424600969|ref|ZP_18040125.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|424605949|ref|ZP_18044913.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|424609782|ref|ZP_18048639.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|424612585|ref|ZP_18051391.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|424616406|ref|ZP_18055096.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|424621344|ref|ZP_18059871.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|424644321|ref|ZP_18082074.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|424651965|ref|ZP_18089486.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|424655912|ref|ZP_18093213.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|440709044|ref|ZP_20889702.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443502858|ref|ZP_21069846.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443506771|ref|ZP_21073560.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443510878|ref|ZP_21077541.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443514440|ref|ZP_21080978.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443518253|ref|ZP_21084669.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443523120|ref|ZP_21089359.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443530752|ref|ZP_21096767.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443534509|ref|ZP_21100420.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443538101|ref|ZP_21103956.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|449056719|ref|ZP_21735387.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
gi|81623203|sp|Q9KTX3.1|RLMN_VIBCH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|9655203|gb|AAF93922.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546714|gb|EAX56891.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126512214|gb|EAZ74808.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519744|gb|EAZ76967.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|149741762|gb|EDM55791.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|254843599|gb|EET22013.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737594|gb|EET92988.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholera
CIRS 101]
gi|262029052|gb|EEY47705.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
INDRE 91/1]
gi|340041391|gb|EGR02357.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HCUF01]
gi|340042104|gb|EGR03069.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-49A2]
gi|341624720|gb|EGS50204.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-70A1]
gi|341625937|gb|EGS51358.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48A1]
gi|341626532|gb|EGS51905.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-40A1]
gi|341640341|gb|EGS64931.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HFU-02]
gi|341647343|gb|EGS71426.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
BJG-01]
gi|341648033|gb|EGS72100.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-38A1]
gi|356419961|gb|EHH73491.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-06A1]
gi|356420909|gb|EHH74417.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-21A1]
gi|356425758|gb|EHH79104.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-19A1]
gi|356432141|gb|EHH85338.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-23A1]
gi|356433744|gb|EHH86929.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-22A1]
gi|356437494|gb|EHH90583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-28A1]
gi|356442563|gb|EHH95402.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-32A1]
gi|356446964|gb|EHH99754.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-43A1]
gi|356449792|gb|EHI02530.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-33A2]
gi|356453149|gb|EHI05812.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-61A1]
gi|356456125|gb|EHI08736.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-48B2]
gi|356645818|gb|AET25873.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. 2010EL-1786]
gi|378794114|gb|AFC57585.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
IEC224]
gi|395920061|gb|EJH30883.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1041(14)]
gi|395921052|gb|EJH31872.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1032(5)]
gi|395923377|gb|EJH34188.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1038(11)]
gi|395929558|gb|EJH40307.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1042(15)]
gi|395932334|gb|EJH43077.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1046(19)]
gi|395936506|gb|EJH47229.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1048(21)]
gi|395943486|gb|EJH54160.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-20A2]
gi|395945941|gb|EJH56605.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-46A1]
gi|395961834|gb|EJH72144.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-56A2]
gi|395963271|gb|EJH73543.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-57A2]
gi|395965953|gb|EJH76089.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-42A1]
gi|395974209|gb|EJH83742.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-47A1]
gi|395977203|gb|EJH86622.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1030(3)]
gi|395978636|gb|EJH88011.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1047(20)]
gi|408009242|gb|EKG47157.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-39A1]
gi|408016022|gb|EKG53583.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-41A1]
gi|408036554|gb|EKG72979.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1040(13)]
gi|408044443|gb|EKG80361.1| ribosomal RNA large subunit methyltransferase N [Vibrio Cholerae
CP1044(17)]
gi|408046037|gb|EKG81758.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1050(23)]
gi|408056511|gb|EKG91389.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A2]
gi|408610754|gb|EKK84119.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
CP1033(6)]
gi|408626825|gb|EKK99659.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A1]
gi|408639974|gb|EKL11776.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-50A2]
gi|408657806|gb|EKL28882.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-77A1]
gi|408658862|gb|EKL29920.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62A1]
gi|408847951|gb|EKL88007.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-37A1]
gi|408848879|gb|EKL88915.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-17A2]
gi|408872904|gb|EKM12112.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-62B1]
gi|408880917|gb|EKM19832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-69A1]
gi|439975344|gb|ELP51467.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
4260B]
gi|443432755|gb|ELS75277.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-64A1]
gi|443436580|gb|ELS82698.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-65A1]
gi|443440142|gb|ELS89832.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-67A1]
gi|443444236|gb|ELS97511.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-68A1]
gi|443448074|gb|ELT04710.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-71A1]
gi|443450848|gb|ELT11113.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-72A2]
gi|443457835|gb|ELT25231.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-7A1]
gi|443462293|gb|ELT33333.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-80A1]
gi|443465690|gb|ELT40349.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HC-81A1]
gi|448263887|gb|EMB01127.1| Ribosomal RNA large subunit methyltransferase N [Vibrio cholerae O1
str. Inaba G4222]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWNIEAFLEVVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELLKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|320157276|ref|YP_004189655.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|326423711|ref|NP_759425.2| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
gi|341941982|sp|Q8DEZ6.2|RLMN_VIBVU RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|319932588|gb|ADV87452.1| ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
MO6-24/O]
gi|319999069|gb|AAO08952.2| Ribosomal RNA large subunit methyltransferase N [Vibrio vulnificus
CMCP6]
Length = 374
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 QLMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|409197663|ref|ZP_11226326.1| ribosomal RNA large subunit methyltransferase N [Marinilabilia
salmonicolor JCM 21150]
Length = 345
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 109/183 (59%), Gaps = 8/183 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKF--HSDLPGLNLAVSL 57
MGEP++N +++++ I T SP+R VST+G+ A+ +F SD +LA+SL
Sbjct: 154 MGEPMDNVENVLKSLEIFTSDWGMGWSPRRFNVSTIGVEPAMRRFIEESDA---HLAISL 210
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H P + R ++MP + +P+E+++++LKEY Q++I EYIM DGVND H L K
Sbjct: 211 HTPFNEERKKLMPIEQVYPIEEVIDSLKEYDFGRQRRISFEYIMFDGVNDTPAHVKGLTK 270
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL + +NLI F+PI S R SSD+K+ F L + TT+R+ G+DI AC
Sbjct: 271 LLNGIRCRINLIRFHPIPD-SPLRGSSDEKIKWFSDQL-NRKGLTTTIRRSRGEDIYAAC 328
Query: 178 GQL 180
G L
Sbjct: 329 GLL 331
>gi|418166379|ref|ZP_12803035.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17971]
gi|353829975|gb|EHE10105.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17971]
Length = 361
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|313672236|ref|YP_004050347.1| 23S rRNA m(2)a-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938992|gb|ADR18184.1| 23S rRNA m(2)A-2503 methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 350
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 110/183 (60%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY +V+A+ I+T GL + S +++TVST G+V I++ +NLAVSL
Sbjct: 160 MGEPLDNYHNVVKAIGIITDEMGLGY--SHRKVTVSTSGVVDRIDELFKLKKQVNLAVSL 217
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
+A D+R IMP + F +EKLM LK +++I IEY+M+ GVND A +L +
Sbjct: 218 NATTDDIRSAIMPINKKFNIEKLMKKLKSLPIQKRKRITIEYVMIKGVNDTLDDAKRLVR 277
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL + +NLI +N G +R + V SFQK L + I +RK +G++I GAC
Sbjct: 278 LLNGLPIKINLIAYND-GGNENYRAPDEQTVLSFQKYLVDKH-ITAFIRKSLGKNIEGAC 335
Query: 178 GQL 180
GQL
Sbjct: 336 GQL 338
>gi|262402858|ref|ZP_06079419.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
gi|262351640|gb|EEZ00773.1| ribosomal RNA large subunit methyltransferase N [Vibrio sp. RC586]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +++ + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|187924520|ref|YP_001896162.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
gi|205829686|sp|B2SXT2.1|RLMN_BURPP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|187715714|gb|ACD16938.1| radical SAM enzyme, Cfr family [Burkholderia phytofirmans PsJN]
Length = 383
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 179 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E A +L L
Sbjct: 238 PSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAL 297
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 298 TRDVPCKFNLIPFNPFPESGLIR-SKPEQIKRFAQVLMDA-GVVTTVRKTRGDDIDAACG 355
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 356 QLAGAVKDR 364
>gi|262165069|ref|ZP_06032806.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|262172172|ref|ZP_06039850.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|424808315|ref|ZP_18233717.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
gi|261893248|gb|EEY39234.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
MB-451]
gi|262024785|gb|EEY43453.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
VM223]
gi|342324852|gb|EGU20633.1| hypothetical protein SX4_2236 [Vibrio mimicus SX-4]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +++ + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|160880620|ref|YP_001559588.1| radical SAM protein [Clostridium phytofermentans ISDg]
gi|205829644|sp|A9KM95.1|RLMN_CLOPH RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|160429286|gb|ABX42849.1| radical SAM enzyme, Cfr family [Clostridium phytofermentans ISDg]
Length = 356
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 112/187 (59%), Gaps = 3/187 (1%)
Query: 2 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP++NY V+ +R+++ +S + ITVST GIV + + + LA+SLHAP
Sbjct: 164 GEPMDNYDNFVKFIRMISSSDGLNISQRNITVSTCGIVPKMRALAEEGFAITLALSLHAP 223
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+ R +IMP A ++ L+ ++NA Y + + +++ EY ++DGVND A +L +LL+
Sbjct: 224 NDEERAKIMPVANSYQLQDVLNACDYYYEKTGRRVSYEYSLVDGVNDTAACAKELSRLLK 283
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NPI ++ S+ + + +F+ IL + I T+R++MG DI+ ACGQL
Sbjct: 284 GKNCHVNLIPVNPIKE-RDYKRSTGNNIQNFKNILEKN-RINVTIRREMGSDINAACGQL 341
Query: 181 VVNLPDK 187
+ DK
Sbjct: 342 RKSYTDK 348
>gi|56476113|ref|YP_157702.1| Fe-S-cluster redox protein [Aromatoleum aromaticum EbN1]
gi|81358332|sp|Q5P7B0.1|RLMN_AROAE RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|56312156|emb|CAI06801.1| predicted Fe-S-cluster redox enzyme [Aromatoleum aromaticum EbN1]
Length = 408
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+R+M + +S +R+TVST GIV A+++ + P + LAVSLHA
Sbjct: 209 MGEPLANFDNVVTALRLMLDDHAYGLSRRRVTVSTSGIVPAMDRLRDECP-VALAVSLHA 267
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PL +LM A + Y ++ + + EY+MLD VND + HA L +L
Sbjct: 268 PDDALRDRLVPINRKYPLRELMAACQRYLERAPRDFVTFEYVMLDDVNDSDAHARALVEL 327
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S F S +++ F IL + I TT RK G D++ ACG
Sbjct: 328 VRDVPCKFNLIPFNPFPN-SGFDRSPAERIRRFAAILIDA-GIVTTTRKTRGDDVNAACG 385
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 386 QLAGQVQDR 394
>gi|323526580|ref|YP_004228733.1| radical SAM protein [Burkholderia sp. CCGE1001]
gi|323383582|gb|ADX55673.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1001]
Length = 383
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 179 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E A +L L
Sbjct: 238 PSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAL 297
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 298 TRDVPCKFNLIPFNPFPESGLVR-SKQEQIKRFAQVLMDA-GVVTTVRKTRGDDIDAACG 355
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 356 QLAGAVKDR 364
>gi|170718501|ref|YP_001783713.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
2336]
gi|205829771|sp|B0UWR0.1|RLMN_HAES2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|205829859|sp|Q0I3U8.2|RLMN_HAES1 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|168826630|gb|ACA32001.1| radical SAM enzyme, Cfr family [Haemophilus somnus 2336]
Length = 372
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LA+SLHA
Sbjct: 165 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAISLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM ++ Y + K+ IEY+MLD +ND +HAHQL
Sbjct: 224 PNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLA 283
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK G DI A
Sbjct: 284 EVLKNTPCKINLIPWNPFPD-APYAKSSNTRIDRFQKTLM-EYGFTVILRKTRGDDIDAA 341
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 342 CGQLAGDVIDR 352
>gi|157371847|ref|YP_001479836.1| ribosomal RNA large subunit methyltransferase N [Serratia
proteamaculans 568]
gi|205829876|sp|A8GHW8.1|RLMN_SERP5 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|157323611|gb|ABV42708.1| radical SAM enzyme, Cfr family [Serratia proteamaculans 568]
Length = 398
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R I+P R + +E + A++ Y S Q ++ +EY+MLD +ND AHQL
Sbjct: 251 PNDKIRDDIVPINRKYNIETFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 EVLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVIDR 379
>gi|24374826|ref|NP_718869.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
gi|81589118|sp|Q8EC29.1|RLMN_SHEON RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|24349512|gb|AAN56313.1| 23S rRNA (adenine2503-C2)-methyltransferase RlmN [Shewanella
oneidensis MR-1]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND + AH+L
Sbjct: 226 PNDELRDILVPVNKKYPLQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 286 QLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|405760932|ref|YP_006701528.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae SPNA45]
gi|404277821|emb|CCM08377.1| Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)
[Streptococcus pneumoniae SPNA45]
Length = 361
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|113461341|ref|YP_719410.1| ribosomal RNA large subunit methyltransferase N [Haemophilus somnus
129PT]
gi|112823384|gb|ABI25473.1| 23S rRNA m(2)A-2503 methyltransferase [Haemophilus somnus 129PT]
Length = 365
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++K S++ + LA+SLHA
Sbjct: 158 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKL-SEMIDVALAISLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ LM ++ Y + K+ IEY+MLD +ND +HAHQL
Sbjct: 217 PNDELRNEIVPINKKYNIKMLMESVNRYLNVSNANHGKVTIEYVMLDHINDGTEHAHQLA 276
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y +RK G DI A
Sbjct: 277 EVLKNTPCKINLIPWNPFPD-APYAKSSNTRIDRFQKTLM-EYGFTVILRKTRGDDIDAA 334
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 335 CGQLAGDVIDR 345
>gi|449146973|ref|ZP_21777724.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
gi|449077467|gb|EMB48450.1| ribosomal RNA large subunit methyltransferase N [Vibrio mimicus
CAIM 602]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLEQMIGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +++ + ++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDELRSQIMPINDRWNIQEFLATVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 ELMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|148244511|ref|YP_001219205.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
gi|205829924|sp|A5CX33.1|RLMN_VESOH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|146326338|dbj|BAF61481.1| Fe-S-cluster redox enzyme [Candidatus Vesicomyosocius okutanii HA]
Length = 356
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 9/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A+ A ++ L F +S +++T+ST GIV +I + P ++LA+SLHA
Sbjct: 161 MGEPLLNEQAVYNACDLLLDDLAFGLSRRKVTISTSGIVPSILRMSKRTP-VSLAISLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + + +E+L+ A K Y Q+ I EY+ML VND +HA++L K
Sbjct: 220 PNNQLRDKLVPVNQKYSIEELLKACKVYLNAGTQERHILFEYVMLKDVNDSTEHANKLAK 279
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ VNLIPFN +Q+++S+ + FQ IL IRT +R+ G+DI GAC
Sbjct: 280 LLKAISAKVNLIPFNSFER-TQYQSSNAQTIEKFQDILYQQ-GIRTMMRRTRGEDIDGAC 337
Query: 178 GQL---VVNLPDKISAK 191
GQL V+N K++A+
Sbjct: 338 GQLAGKVLNKTKKLNAR 354
>gi|387129969|ref|YP_006292859.1| ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM7]
gi|386271258|gb|AFJ02172.1| Ribosomal RNA large subunit methyltransferase N [Methylophaga sp.
JAM7]
Length = 281
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V A+RIM + +S +R+T+ST G+V I++ D P ++LA+SLHA
Sbjct: 80 MGEPLANYLNVVRAMRIMRDDYGYGISWRRLTLSTSGMVPMIDRLKEDCP-VSLAISLHA 138
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVNDEEQHAHQLGK 117
+R +++P +P+ L+ A Y QQ+ I IEY+ML GVND Q A L +
Sbjct: 139 ANDTLRSEMIPLNDKYPIADLLAACHRYVSGGQQRRHITIEYVMLAGVNDSAQDARDLIR 198
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ +NLIPFNP + +R SS + F++ L + I TVRK G DI AC
Sbjct: 199 LLKGLPNKINLIPFNPFPG-THYRCSSRKNLERFKQQLIDAGQI-VTVRKTRGDDIVAAC 256
Query: 178 GQLVVNLPDK 187
GQL + DK
Sbjct: 257 GQLAGEVKDK 266
>gi|319649619|ref|ZP_08003775.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
gi|317398781|gb|EFV79463.1| hypothetical protein HMPREF1013_00379 [Bacillus sp. 2_A_57_CT2]
Length = 361
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 113/183 (61%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +++ ++I+ GL + + ITVST GI+ I KF + +N A+SL
Sbjct: 173 IGEPFDNYDSMLSFLKIINHDKGL--NIGARHITVSTSGIIPKIYKFADENMQINFAISL 230
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP RA+ L LM++++ Y + +++ EY + GVND+ +HA +L K
Sbjct: 231 HAPNTEIRSRLMPINRAYKLPDLMDSIRYYINKTGRRVSFEYGLFGGVNDQVEHAEELAK 290
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + RT D++ +F+K L+ ++ I T+R++ G DI AC
Sbjct: 291 LIKNVKCHVNLIPVNYVPERDYVRTPK-DQIFAFEKTLK-NHGINVTIRREHGHDIDAAC 348
Query: 178 GQL 180
GQL
Sbjct: 349 GQL 351
>gi|334705279|ref|ZP_08521145.1| ribosomal RNA large subunit methyltransferase N [Aeromonas caviae
Ae398]
Length = 367
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+++M F +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 161 MGEPLLNLANVVPAMKLMMDDFGFSISKRRVTLSTSGVVPALDML-GDQIDVALAISLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + ++ Y S ++ +EY++LD +ND+ QHAH+L
Sbjct: 220 PNDALRSEIMPINDKYNIEAFLAGVRRYLAKSNANGGRVTVEYVLLDHINDDMQHAHELA 279
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP + F S+ ++ F K+L Y + VRK G DI A
Sbjct: 280 KVLKETPCKINLIPFNPFPG-NPFGKPSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 337
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 338 CGQLVGEVIDR 348
>gi|78066584|ref|YP_369353.1| hypothetical protein Bcep18194_A5115 [Burkholderia sp. 383]
gi|123770007|sp|Q39FQ7.1|RLMN_BURS3 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77967329|gb|ABB08709.1| 23S rRNA m(2)A-2503 methyltransferase [Burkholderia sp. 383]
Length = 379
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 234 PNDPLRDELVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAV 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLIR-SKPEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|320353873|ref|YP_004195212.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
gi|320122375|gb|ADW17921.1| 23S rRNA m(2)A-2503 methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 371
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 114/184 (61%), Gaps = 10/184 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N+ L++A+ I+T GL F S +RITVST G+V + + + +NLAVSL
Sbjct: 166 MGEPLANFDNLLDAIAILTEQRGLDF--SNRRITVSTCGLVPQMRRLGEE-TDVNLAVSL 222
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA +VR ++MP + +P+ +L+ + Y++ +++I EY +L G+ND + A QL +
Sbjct: 223 HAVNDEVRSRLMPVNKRYPIAELIEVCRTYRQKRRKRIMFEYTLLQGINDSDADAVQLAE 282
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG-SYNIRTTVRKQMGQDISGA 176
LL +NL+ NP GS S +++ +++V FQ+ILR Y + +R G+DIS A
Sbjct: 283 LLREVPCKINLLAVNP-GSGSAYQSPGEERVLCFQRILRDRGYTV--FIRTSRGEDISAA 339
Query: 177 CGQL 180
CGQL
Sbjct: 340 CGQL 343
>gi|156973378|ref|YP_001444285.1| ribosomal RNA large subunit methyltransferase N [Vibrio harveyi
ATCC BAA-1116]
gi|388601640|ref|ZP_10160036.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
DS40M4]
gi|444426831|ref|ZP_21222235.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|205829926|sp|A7MU39.1|RLMN_VIBHB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|156524972|gb|ABU70058.1| hypothetical protein VIBHAR_01065 [Vibrio harveyi ATCC BAA-1116]
gi|444239929|gb|ELU51482.1| ribosomal RNA large subunit methyltransferase N [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 375
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|390453287|ref|ZP_10238815.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
peoriae KCTC 3763]
Length = 366
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 181 GEPFENYEATMTFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 238
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R +P +M++L+ Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 239 APNDALRSKLMPVNRRYPFNDVMDSLRYYLAKTGRRISFEYALIGGVNDQAEHAEELADV 298
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + RTS D + +FQ+IL I T+R++ G DI+ ACG
Sbjct: 299 LKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRIL-ADKGINVTIRREQGHDIAAACG 356
Query: 179 QL 180
QL
Sbjct: 357 QL 358
>gi|377820992|ref|YP_004977363.1| radical SAM enzyme, Cfr family [Burkholderia sp. YI23]
gi|357935827|gb|AET89386.1| radical SAM enzyme, Cfr family [Burkholderia sp. YI23]
Length = 380
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 175 MGEPMLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLAADLP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 234 PNDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAHARELLAV 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP S S ++++ F ++L + + TTVRK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPE-SGLTRSKNEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVQDR 360
>gi|373496938|ref|ZP_09587481.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
gi|404366950|ref|ZP_10972326.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|313689832|gb|EFS26667.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
ulcerans ATCC 49185]
gi|371964597|gb|EHO82110.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
12_1B]
Length = 350
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 111/188 (59%), Gaps = 2/188 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + +++A+ I++ +S ++IT+ST GIV I K + + LA+SLH+
Sbjct: 164 MGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAISLHS 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ R I+P R++PLE L L+EYQ+ ++++I EYIM++ N + A+ L +
Sbjct: 224 AINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKRRISFEYIMINDFNVSDIDANALADFV 283
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F VVNLIP+NP+ ++F S+ K+ F L+ + T+R++ G DI GACGQ
Sbjct: 284 HEFDHVVNLIPYNPVAG-TEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDGACGQ 342
Query: 180 LVVNLPDK 187
L P K
Sbjct: 343 LRQKAPKK 350
>gi|407714027|ref|YP_006834592.1| ribosomal RNA large subunit methyltransferase N [Burkholderia
phenoliruptrix BR3459a]
gi|407236211|gb|AFT86410.1| Ribosomal RNA large subunit methyltransferase N [Burkholderia
phenoliruptrix BR3459a]
Length = 388
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 184 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 242
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E A +L L
Sbjct: 243 PSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAL 302
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 303 TRDVPCKFNLIPFNPFPESGLVR-SKQEQIKRFAQVLMDA-GVVTTVRKTRGDDIDAACG 360
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 361 QLAGAVKDR 369
>gi|418531067|ref|ZP_13096986.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
gi|371451776|gb|EHN64809.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni ATCC
11996]
Length = 373
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHA
Sbjct: 164 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHA 222
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L
Sbjct: 223 PNDPLRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIEL 282
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP + R+ S +V+ F +L + I TTVRK G DI
Sbjct: 283 VRARGDGRSWCKFNLIPFNPFPASGLLRSPS-ARVTEFAALLSNA-GIVTTVRKTRGDDI 340
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 341 DAACGQLAGDVKDRTRA 357
>gi|374262913|ref|ZP_09621473.1| radical SAM protein [Legionella drancourtii LLAP12]
gi|363536729|gb|EHL30163.1| radical SAM protein [Legionella drancourtii LLAP12]
Length = 378
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 5/191 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+T+ST G++ + + P + LAVSLHA
Sbjct: 167 MGEPLLNFDNVVSAMNIMMDDFAYGLSKRRVTLSTSGVLPDLERLRQVSP-VALAVSLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +++P + +PL +LM K Y K+ ++K+ EY+ML GVND+ +HA QL KL
Sbjct: 226 PNDELRNELVPINKKYPLAQLMALCKIYFKDEPRRKVTFEYVMLKGVNDQPEHATQLIKL 285
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP ++Q++ SS + +F+ L + I T RK G DI ACG
Sbjct: 286 LRDVPAKVNLIPFNPF-PMTQYQRSSQAAIDAFRDKLIAN-GINTITRKTRGDDIDAACG 343
Query: 179 QLVVNLPDKIS 189
QL + D+ S
Sbjct: 344 QLAGEVKDRTS 354
>gi|160915438|ref|ZP_02077649.1| hypothetical protein EUBDOL_01446 [Eubacterium dolichum DSM 3991]
gi|158432558|gb|EDP10847.1| 23S rRNA m2A2503 methyltransferase [Eubacterium dolichum DSM 3991]
Length = 347
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 7/184 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY ++ +R + GL + + IT+ST G+V I F + NLA+SLH
Sbjct: 160 GEPFDNYDHVMNFLRTVNHDRGLG--IGARHITISTCGVVPRIYDFSKEHTQYNLAISLH 217
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP +A+PLE+LM A++ Y + +++ EYI+L GVND + ++L KL
Sbjct: 218 APSNELRNQLMPINKAYPLEELMQAIRYYTSENNRRLTFEYILLKGVNDGMKQVNELAKL 277
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP+N + ++ + + +++ IR T+RK+ G DI ACG
Sbjct: 278 LKGLNAYVNLIPYNAVDENGFLGVKYEEAMVFYDALMKRG--IRCTIRKEHGADIDAACG 335
Query: 179 QLVV 182
QL V
Sbjct: 336 QLRV 339
>gi|427430954|ref|ZP_18920650.1| Ribosomal RNA large subunit methyltransferase N [Caenispirillum
salinarum AK4]
gi|425878131|gb|EKV26850.1| Ribosomal RNA large subunit methyltransferase N [Caenispirillum
salinarum AK4]
Length = 421
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 108/182 (59%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V+A++I+ G +S +RIT+ST G+V + + +D+ +NLAVSLHA
Sbjct: 219 MGEPLYNYDNVVKALKILVDGDGIALSRRRITLSTSGVVPEMYRLGNDI-NVNLAVSLHA 277
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKL 118
++R +IMP + +PL +LM A +EY S ++I EY+ML VND + A L KL
Sbjct: 278 ATDEIRNRIMPINKKYPLAELMKACREYPNVSNARRITFEYVMLKDVNDSDADARALAKL 337
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+E NLIPFNP SQF SS +++ F +L +R G+DI ACG
Sbjct: 338 VEGIPCKFNLIPFNPWPG-SQFECSSWNRIRKFSDLLY-DLGFSAPIRMPRGRDILAACG 395
Query: 179 QL 180
QL
Sbjct: 396 QL 397
>gi|340753859|ref|ZP_08690632.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
gi|229423409|gb|EEO38456.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium sp.
2_1_31]
Length = 358
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 103/181 (56%), Gaps = 2/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L A+ I++ +S ++IT+ST GIV I K + + LAVSLH+
Sbjct: 170 MGEPLLNIDNLSTALSIISNENGINISKRKITISTSGIVSGIEKILLEKIPIELAVSLHS 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ D R QI+P + FPLE L L EYQK ++++I EYI++D N E A+ L +
Sbjct: 230 AINDKRDQIIPINKNFPLEDLSAVLVEYQKQTKRRITFEYILIDNFNISEADANALADFI 289
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F VVNLIP+N + V R S K+ F L+ + T+R++ G DI GACGQ
Sbjct: 290 HQFDHVVNLIPYNEVEGVEHKRPSM-KKIDRFYNYLKNVRKVNVTLRQEKGSDIDGACGQ 348
Query: 180 L 180
L
Sbjct: 349 L 349
>gi|406997882|gb|EKE15886.1| YloN [uncultured bacterium]
Length = 346
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 112/186 (60%), Gaps = 8/186 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP N+ + E+++I+T F + ++VST GI I K + P +NLA+SLH
Sbjct: 161 MGEPFLNWENVSESLKILTSKDLFGFGSRSLSVSTSGIAEGILKLAEEFPQVNLAISLHF 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R + MP + LEK+ AL++Y + +++K+F+EYI+LDG+ND E+ A +L K L
Sbjct: 221 PDDEKRSEFMPVNKKDNLEKIKEALQKYFQKTKRKVFVEYILLDGINDSEKDAEKLAKYL 280
Query: 120 ETFQ----VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
+ + +NLI +N + + F SS +K F++ L I +T+RK +G++I G
Sbjct: 281 HSIGNAHLLHINLIRYNM--TSADFLPSSRNKAYIFKEFL-SKRKINSTIRKSLGEEIQG 337
Query: 176 ACGQLV 181
ACGQL
Sbjct: 338 ACGQLA 343
>gi|308069673|ref|YP_003871278.1| hypothetical protein PPE_02915 [Paenibacillus polymyxa E681]
gi|305858952|gb|ADM70740.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 346
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 161 GEPFENYEATMTFLRTMVHEKGL--NIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R +P + +M++L+ Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGRRISFEYALIGGVNDQAEHAEELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + RTS D + +FQ+IL + T+R++ G DI+ ACG
Sbjct: 279 LKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRIL-AEKGVNVTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|259047489|ref|ZP_05737890.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
gi|259035680|gb|EEW36935.1| Cfr family radical SAM enzyme [Granulicatella adiacens ATCC 49175]
Length = 371
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY +++ ++++ + + + ITVST G+ I +F + +NLA+SLHA
Sbjct: 175 IGEPFDNYDNVIKFLKVVNSDKGLGIGARHITVSTSGLAPKIREFADEGLQVNLALSLHA 234
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D R +IM R +P+E +M+A+ EY + +++ EYIMLD VND + A QL LL
Sbjct: 235 PDNDTRSRIMRINRKYPIEVVMDAINEYIAKTNRRVTFEYIMLDHVNDSVEQAQQLADLL 294
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + VNLIP+N + Q+ S ++V +F +L+ ++ I VRK+ G DI AC
Sbjct: 295 ADKKRLSYVNLIPYNKVREHDQYERSGKERVVAFYDVLKKNH-INCVVRKEFGHDIEAAC 353
Query: 178 GQL 180
GQL
Sbjct: 354 GQL 356
>gi|205829861|sp|A9BMV6.2|RLMN_DELAS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
Length = 374
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ALV A+R M + +S +R+TVST G+V I++ D + +AVSLHA
Sbjct: 165 MGEPLQNYTALVPALRAMLDDHGYGLSRRRVTVSTSGVVPMIDRLSQDC-AVAMAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P R +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L
Sbjct: 224 PNDELRDPLVPLNRKYPIHELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIEL 283
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP + R+ + +V+ F +L + I TTVRK G DI
Sbjct: 284 VRARGDGRSWCKFNLIPFNPFPASGLLRSPA-ARVTEFASLLSNA-GIVTTVRKTRGDDI 341
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 342 DAACGQLAGDVKDRTRA 358
>gi|264679426|ref|YP_003279333.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
gi|262209939|gb|ACY34037.1| radical SAM enzyme, Cfr family [Comamonas testosteroni CNB-2]
Length = 369
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHA
Sbjct: 160 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L
Sbjct: 219 PNDPLRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQPEHARQLIEL 278
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP + R+ S +V+ F +L + I TTVRK G DI
Sbjct: 279 VRARGDGKSWCKFNLIPFNPFPASGLLRSPS-ARVTEFATLLSNA-GIVTTVRKTRGDDI 336
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 337 DAACGQLAGDVKDRTRA 353
>gi|296314505|ref|ZP_06864446.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
gi|296838812|gb|EFH22750.1| radical SAM enzyme, Cfr family [Neisseria polysaccharea ATCC 43768]
Length = 364
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACRRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|255067157|ref|ZP_05319012.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
gi|255048525|gb|EET43989.1| radical SAM enzyme, Cfr family [Neisseria sicca ATCC 29256]
Length = 364
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QHA +L +L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|340757467|ref|ZP_08694065.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
gi|251834729|gb|EES63292.1| ribosomal RNA large subunit methyltransferase N [Fusobacterium
varium ATCC 27725]
Length = 350
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 111/188 (59%), Gaps = 2/188 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + +++A+ I++ +S ++IT+ST GIV I K + + LA+SLH+
Sbjct: 164 MGEPLLNLSNVLKALDILSNENGINISKRKITISTSGIVPNIEKILLEKLPIELAISLHS 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ R I+P R++PLE L L+EYQ+ ++++I EYIM++ N + A+ L +
Sbjct: 224 AINAKRDMIIPVNRSYPLEDLYAILQEYQRQTKRRISFEYIMINEFNVSDVDANALADFV 283
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
F VVNLIP+NP+ ++F S+ K+ F L+ + T+R++ G DI GACGQ
Sbjct: 284 HEFDHVVNLIPYNPVAG-TEFERPSEKKIEKFFTFLKDVRKVNVTLRREKGTDIDGACGQ 342
Query: 180 LVVNLPDK 187
L P K
Sbjct: 343 LRQKAPKK 350
>gi|431931243|ref|YP_007244289.1| 2-vinyl bacteriochlorophyllide hydratase [Thioflavicoccus mobilis
8321]
gi|431829546|gb|AGA90659.1| 23S rRNA m2A2503 methyltransferase [Thioflavicoccus mobilis 8321]
Length = 374
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 11/199 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A V A+ I+ + +S R+T+ST GIV I + + + + LAVSLHA
Sbjct: 170 MGEPLANFDAAVAAMEILQDDFAYMLSKYRVTLSTSGIVPNIYRLGT-VSDVALAVSLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PLE L+ A K Y + + +++I EY+MLDGVND + A QL +L
Sbjct: 229 PNNALRDELVPINRKYPLEVLLPACKTYLRGDRRRRITWEYVMLDGVNDGMKEAKQLIRL 288
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTVRKQMGQDISGAC 177
LE +NLIPFNP +F S ++V +F Q++LR + TT RK G I+ AC
Sbjct: 289 LEGIPSKINLIPFNPFPG-GRFAASPPERVEAFRQRLLRS--GLMTTTRKTRGDAIAAAC 345
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQLV ++ TPP
Sbjct: 346 GQLV----GQVQRHRTPPA 360
>gi|320539274|ref|ZP_08038944.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
gi|320030666|gb|EFW12675.1| putative 23S rRNA m(2)A2503 methyltransferase, SAM-dependen
[Serratia symbiotica str. Tucson]
Length = 399
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 193 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 251
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + +E + A++ Y S Q ++ +EY+MLD +ND AHQL
Sbjct: 252 PNDKIRNEIVPINRNYNIESFLAAVRRYLAKSNANQGRVTVEYVMLDHINDSTDDAHQLA 311
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L+ +NLIP+NP + R SS+ +V F K+L Y T VR+ G DI A
Sbjct: 312 NVLKNTPCKINLIPWNPFPAAPYGR-SSNSRVDRFAKVLM-EYGFTTIVRRTRGDDIDAA 369
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 370 CGQLAGEVIDR 380
>gi|83720408|ref|YP_442753.1| radical SAM protein [Burkholderia thailandensis E264]
gi|167619819|ref|ZP_02388450.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
Bt4]
gi|123753780|sp|Q2SWE6.1|RLMN_BURTA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|83654233|gb|ABC38296.1| radical SAM enzyme, Cfr family [Burkholderia thailandensis E264]
Length = 378
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 115/201 (57%), Gaps = 5/201 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + PL +LM A + Y K + + I EY MLDGVND E HA +L L
Sbjct: 234 PNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TT+RK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLLR-SKTEQIKRFAQVLIDA-GVVTTIRKTRGDDIDAACG 351
Query: 179 QLVVNLPDKISAKSTPPVTDI 199
QL + D+ T I
Sbjct: 352 QLAGAVKDRTRLAERTGATKI 372
>gi|329930082|ref|ZP_08283701.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
gi|328935341|gb|EGG31816.1| 23S rRNA m2A2503 methyltransferase [Paenibacillus sp. HGF5]
Length = 346
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 110/187 (58%), Gaps = 9/187 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGE L N + +A+ ++T F + +RITVST+G++ + K + P +NL SLH+
Sbjct: 155 MGEALAN-PYVFDALHVLTDPKLFGLGHRRITVSTIGLIPGVKKLTKEFPQINLTFSLHS 213
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D R ++MP FPLE++M L E+ + +++K++I YI+L G+ND +HA + LL
Sbjct: 214 PFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKRKVYIAYILLRGINDSTKHAEAVADLL 273
Query: 120 E-----TFQVVVNLIPFNPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
VNLIP+N + SQ F S + ++ F +IL+ S I TVR Q G DI
Sbjct: 274 RGRGPWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILK-SKGIHVTVRTQFGSDI 332
Query: 174 SGACGQL 180
+ ACGQL
Sbjct: 333 NAACGQL 339
>gi|310642737|ref|YP_003947495.1| ribosomal RNA large subunit methyltransferase n [Paenibacillus
polymyxa SC2]
gi|309247687|gb|ADO57254.1| Ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa SC2]
Length = 355
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 170 GEPFENYEATMTFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 227
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R +P + +M++L+ Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 228 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGRRISFEYALIGGVNDQAEHAEELADV 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + RTS D + +FQ+IL + T+R++ G DI+ ACG
Sbjct: 288 LKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRIL-AEKGVNVTIRREQGHDIAAACG 345
Query: 179 QL 180
QL
Sbjct: 346 QL 347
>gi|224826446|ref|ZP_03699548.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|347540922|ref|YP_004848347.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
gi|224601547|gb|EEG07728.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania ferrooxidans
2002]
gi|345644100|dbj|BAK77933.1| radical SAM enzyme, Cfr family [Pseudogulbenkiania sp. NH8B]
Length = 364
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A++IM + +S +R+TVST G+V +++ P + LAVSLHA
Sbjct: 163 MGEPLANFDNVVSALQIMLDDHGYGLSRRRVTVSTSGMVPQMDRLREACP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R I+P + +PL +LM A + Y +K + + EY+MLD VND +HA QL +L
Sbjct: 222 PNDAIRDVIVPINKKYPLRELMAACQRYLEKAPRDFVTFEYVMLDDVNDRPEHARQLIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F++IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNNAIHRFREILQEAGYV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDKISAKS 192
QL + DK K+
Sbjct: 340 QLAGQVQDKTRRKT 353
>gi|407772688|ref|ZP_11119990.1| Fe-S-cluster redox protein [Thalassospira profundimaris WP0211]
gi|407284641|gb|EKF10157.1| Fe-S-cluster redox protein [Thalassospira profundimaris WP0211]
Length = 418
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M G +S +RIT+ST G+V I + DL G+ LA+SLHA
Sbjct: 205 MGEPLFNYENVRDALRIAMDGEGISISRRRITLSTSGVVPEIVRCGEDL-GVGLAISLHA 263
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P D+R +IMP + +PL++LM+A + Y S + I +EY+ML GVND+ +HA L KL
Sbjct: 264 PDDDLRNEIMPINKKYPLKELMDACRNYPGMSNARPITMEYVMLKGVNDKPEHARALAKL 323
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFN S + + + + F +IL + +R G+DI ACG
Sbjct: 324 VKGVHCKFNLIPFNKWPG-SDYECTPTNDIKKFAQILLDN-GYEAPIRWPRGRDILAACG 381
Query: 179 QL 180
QL
Sbjct: 382 QL 383
>gi|421238401|ref|ZP_15694970.1| radical SAM superfamily protein [Streptococcus pneumoniae 2071247]
gi|421244595|ref|ZP_15701098.1| radical SAM superfamily protein [Streptococcus pneumoniae 2081685]
gi|395602988|gb|EJG63129.1| radical SAM superfamily protein [Streptococcus pneumoniae 2071247]
gi|395610253|gb|EJG70332.1| radical SAM superfamily protein [Streptococcus pneumoniae 2081685]
Length = 361
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ V I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVCTINDDKGMAIGARHITVSTSGLAHKIRNFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEYGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAEV 359
>gi|384917380|ref|ZP_10017506.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
gi|384525238|emb|CCG93379.1| Radical SAM family enzyme (modular protein) [Methylacidiphilum
fumariolicum SolV]
Length = 362
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 115/182 (63%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY L++A+R++T +SP+RIT+ST GIV I + ++ LA+SLHA
Sbjct: 159 MGEPLLNYEQLIQAIRLITSSWGLSISPRRITISTSGIVPNILRLANESLPFRLAISLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R ++MP R +PL+ L+ + + + +QKI +EYI++ GVND + +L K+
Sbjct: 219 TTDELRNKLMPINRKYPLQDLLKSCEVFCSKRKQKITLEYILIAGVNDRMEDVERLAKIA 278
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI-LRGSYNIRTTVRKQMGQDISGACG 178
++ + VNLI +NP+ + + + ++ F K+ ++G ++ ++R++ G+DI GACG
Sbjct: 279 KSLKAKVNLIAYNPVLQMPWKTPNKKEIMTFFHKLQIKG---VQVSLRQERGRDIDGACG 335
Query: 179 QL 180
QL
Sbjct: 336 QL 337
>gi|419720356|ref|ZP_14247592.1| 23S rRNA m2A2503 methyltransferase [Lachnoanaerobaculum saburreum
F0468]
gi|383303456|gb|EIC94905.1| 23S rRNA m2A2503 methyltransferase [Lachnoanaerobaculum saburreum
F0468]
Length = 351
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL+NY +V+ VRI++ + +S + ITVST GIV I K + + LA+SLHAP
Sbjct: 158 GEPLDNYDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLHAP 217
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R IMP A + L+ ++ A Y K + +++ EY ++ GVND + A L +L+
Sbjct: 218 NDEIRKTIMPVANKYALKDIIAACDYYFKKTGRRVSYEYSLVAGVNDNMEEAKSLVRLVN 277
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
V +NLIP NPI F+ S K+ +F+ L + T+R++MG+DI GACGQL
Sbjct: 278 GRNVHINLIPVNPIKE-RDFKQSDKLKIKAFRDFLEKK-GVNATIRREMGRDIDGACGQL 335
>gi|340362818|ref|ZP_08685184.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
gi|339886976|gb|EGQ76579.1| cfr family radical SAM enzyme [Neisseria macacae ATCC 33926]
Length = 364
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFENVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDGVND+ QHA +L +L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGVNDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|15644462|ref|NP_229514.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|403253350|ref|ZP_10919651.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
gi|418045773|ref|ZP_12683868.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|81553682|sp|Q9X240.1|RLMN_THEMA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|4982292|gb|AAD36781.1|AE001811_1 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351676658|gb|EHA59811.1| Ribosomal RNA large subunit methyltransferase N [Thermotoga
maritima MSB8]
gi|402810884|gb|EJX25372.1| ribosomal RNA large subunit methyltransferase N [Thermotoga sp.
EMP]
Length = 343
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++++RI+ + +RIT+STVGI I + + + LA+SLHA
Sbjct: 157 MGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P R Q++P + + +E+++NA+K YQ+ + ++ IEY+++ G+NDE A +L ++L
Sbjct: 217 PTNFKRDQLVPLNKKYSIEEILNAVKIYQRKTGNRVTIEYVLIRGINDEISDAKKLAEIL 276
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+V VNLIP NP +V R S +++ +F++IL + I +R++ G DI ACGQ
Sbjct: 277 RNMKVFVNLIPVNP--TVEGLRRPSRERLLTFKRILLEN-GIEAEIRREKGTDIEAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|304387385|ref|ZP_07369577.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
gi|304338636|gb|EFM04754.1| cfr family radical SAM enzyme [Neisseria meningitidis ATCC 13091]
Length = 364
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S++ SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VTDVPCKFNLIPFNPFPN-SRYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|78484965|ref|YP_390890.1| hypothetical protein Tcr_0620 [Thiomicrospira crunogena XCL-2]
gi|123741643|sp|Q31I07.1|RLMN_THICR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|78363251|gb|ABB41216.1| radical SAM enzyme, Cfr family [Thiomicrospira crunogena XCL-2]
Length = 370
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 114/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N RI M + +S +R+T+ST G+V AI+K L ++LA+SLHA
Sbjct: 169 MGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKESL-DVSLAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK--NSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +PLE LM AL Y + +S++ + +EY+MLD VND +HA QL +
Sbjct: 228 PNNALRDELVPINKKYPLEVLMPALHRYVEGGHSKKHVTVEYVMLDHVNDRLEHAQQLIE 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIPFNP + + ++ SS++ V F+ L + + TVR+ G DI AC
Sbjct: 288 LLGDLPCKVNLIPFNPFPN-TDYKRSSNNAVHRFKDALMEA-GVNCTVRRTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQL + D+
Sbjct: 346 GQLAGKVKDR 355
>gi|410460746|ref|ZP_11314419.1| ribosomal RNA large subunit methyltransferase N [Bacillus
azotoformans LMG 9581]
gi|409926676|gb|EKN63832.1| ribosomal RNA large subunit methyltransferase N [Bacillus
azotoformans LMG 9581]
Length = 363
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 112/183 (61%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY +L+ +RI+ GL + + ITVST GI+ I F + +N A+SL
Sbjct: 175 IGEPFDNYNSLLSFLRIVNDDKGL--NIGARHITVSTSGIIPRIYDFADEGLQINFAISL 232
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP +A+ L+ LM A+K Y + + ++I EY + GVND+++HA +L +
Sbjct: 233 HAPNTELRTRLMPVNKAYDLQDLMKAVKYYTEKTGRRITFEYGLFGGVNDQQEHAEELAR 292
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + RT +++ F+K L+ + I T+R++ G DI AC
Sbjct: 293 LIKGLKCHVNLIPVNYVPERDYVRTPR-NQIFEFEKTLKKN-GINVTIRREQGHDIEAAC 350
Query: 178 GQL 180
GQL
Sbjct: 351 GQL 353
>gi|149190092|ref|ZP_01868369.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
gi|148836122|gb|EDL53082.1| hypothetical protein VSAK1_12070 [Vibrio shilonii AK1]
Length = 374
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ ++ + LA+SLHA
Sbjct: 167 MGEPLLNMKNLMPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGEID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDKLRSEIMPINDRWDIEDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ F K L Y+ TVRK G DI A
Sbjct: 286 ELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFMKTLM-QYDYTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|21672555|ref|NP_660622.1| hypothetical protein BUsg275 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091617|sp|Q8K9P5.1|RLMN_BUCAP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|21623181|gb|AAM67833.1| hypothetical 43.1 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 363
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 117/192 (60%), Gaps = 7/192 (3%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A++I + F +S +RIT+ST GIV A+NK + ++LA+SLHA
Sbjct: 173 MGEPLLNLNNVISAIKIILDKNGFGLSKRRITLSTSGIVPALNKLIKKID-VSLAISLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLG 116
P +R IMP + ++ +N++ +Y K+S + +EY+ML G+ND +HA +LG
Sbjct: 232 PNDFIRNSIMPINMKYNIKSFLNSVSKYLKHSHANRGGVTVEYVMLRGINDLNEHAEELG 291
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L+ +NLIP+N + + F SS ++++ F ILR TT+RK GQDI A
Sbjct: 292 NILKKIPSKINLIPWNFFKN-ANFICSSKNRINIFANILRKK-GFNTTIRKNRGQDIGAA 349
Query: 177 CGQLVVNLPDKI 188
CGQL ++ ++I
Sbjct: 350 CGQLTGDIVNRI 361
>gi|386287223|ref|ZP_10064398.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
gi|385279755|gb|EIF43692.1| radical SAM enzyme, Cfr family protein [gamma proteobacterium
BDW918]
Length = 386
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 119/191 (62%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +VEA+ +M + +S +R+T+ST G+V ++K D+ ++LA+SLHA
Sbjct: 179 MGEPLLNFDNVVEAMSLMLDDFGYGLSKRRVTLSTSGVVPMLDKL-GDVSTVSLAISLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R Q++P + +P+ +L+ A K Y Q ++ + + IEY ++ GVND +HA +L
Sbjct: 238 PNDELRSQLVPINKKYPIAELLAASKRYIAKQDDTHRVVTIEYTLIAGVNDGVEHAKELA 297
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L VNLIPFNP S+S ++ S++ V+ F ++ + + TTVR G DI A
Sbjct: 298 EVLRDLPCKVNLIPFNPF-SLSNYKRPSNNAVNRFWLVMTEAGYV-TTVRTPRGDDIDAA 355
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 356 CGQLAGQVQDR 366
>gi|225028096|ref|ZP_03717288.1| hypothetical protein EUBHAL_02366 [Eubacterium hallii DSM 3353]
gi|224954566|gb|EEG35775.1| 23S rRNA m2A2503 methyltransferase [Eubacterium hallii DSM 3353]
Length = 349
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 112/182 (61%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +N+ +L + ++ GL +S + ITVST GIV I +F P + LA+SLH
Sbjct: 161 GEPFDNFESLCRMIELLCSPDGL--NISHRNITVSTCGIVPKIYEFADRNPQVTLAISLH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+P +R ++MP A + +++LM A + Y + + ++I EY ++ GVND+++HA +L
Sbjct: 219 SPNDTMRRELMPIANKYSMDELMEAARYYTRTTGRRITFEYSLVKGVNDKKEHAQELISR 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ +NLIP NPI F S+ + V++F+ IL + I+ TVR++MG+DI ACG
Sbjct: 279 VKGMNCHINLIPVNPIKE-RDFEQSTQNNVAAFKHILERQH-IQVTVRREMGRDIQAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|261494121|ref|ZP_05990624.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496038|ref|ZP_05992448.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261308288|gb|EEY09581.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310287|gb|EEY11487.1| radical SAM enzyme, Cfr family [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 415
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM + +S +R+T+ST G+V A++K + + LA+SLHA
Sbjct: 209 MGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDKMREQID-VALAISLHA 267
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +++P + + ++ LM+++ +Y + S K+ IEY+MLD VND HAHQL
Sbjct: 268 PNDELRDELVPINKKYNIKMLMDSVNKYLEVSNANHGKVTIEYVMLDHVNDSTDHAHQLA 327
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ +V FQK L Y TVRK G DI A
Sbjct: 328 EVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVTVRKTRGDDIDAA 385
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 386 CGQLAGDVIDR 396
>gi|413962504|ref|ZP_11401731.1| radical SAM enzyme, Cfr family protein [Burkholderia sp. SJ98]
gi|413928336|gb|EKS67624.1| radical SAM enzyme, Cfr family protein [Burkholderia sp. SJ98]
Length = 380
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 175 MGEPMLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLAADLP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E HA +L +
Sbjct: 234 PNDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAV 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP S S ++++ F ++L + + TTVRK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPE-SGLTRSKNEQIKRFAQVLIDA-GVVTTVRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVQDR 360
>gi|418294917|ref|ZP_12906794.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379066277|gb|EHY79020.1| Ribosomal RNA large subunit methyltransferase N [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 382
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 119/191 (62%), Gaps = 8/191 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM L + +S +++T+ST G+V I++ + + ++LA+SLHA
Sbjct: 169 MGEPLLNFDNVVAAMHIMMDDLGYGISKRKVTLSTSGVVPMIDEL-AKVIDVSLALSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R Q++P + +PL+ L+ A K Y Q ++ + IEY +L G+ND+ +HA Q+
Sbjct: 228 PNDELRDQLVPINKKYPLDMLLAACKRYISQLGEKRVLTIEYTLLKGINDQPEHAEQMIT 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR-GSYNIRTTVRKQMGQDISGA 176
LL +NLIPFNP S + S++ + FQ ILR G +N+ TVR G+DI A
Sbjct: 288 LLANIPCKINLIPFNPFPH-SGYERPSNNAIRRFQDILRKGGHNV--TVRTTRGEDIDAA 344
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 345 CGQLVGQVLDR 355
>gi|386041818|ref|YP_005960772.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa M1]
gi|343097856|emb|CCC86065.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
polymyxa M1]
Length = 346
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 161 GEPFENYEATMTFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R +P + +M++L+ Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDALRSKLMPVNRRYPFKDVMDSLRYYLAKTGRRISFEYALIGGVNDQAEHAEELADV 278
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + RTS D + +FQ+IL + T+R++ G DI+ ACG
Sbjct: 279 LKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRIL-AEKGVNVTIRREQGHDIAAACG 336
Query: 179 QL 180
QL
Sbjct: 337 QL 338
>gi|334129939|ref|ZP_08503742.1| Putative Fe-S-cluster redox enzyme [Methyloversatilis universalis
FAM5]
gi|333444975|gb|EGK72918.1| Putative Fe-S-cluster redox enzyme [Methyloversatilis universalis
FAM5]
Length = 369
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 117/202 (57%), Gaps = 6/202 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A V A+++M + +S +R+TVST GIV A+++ P + LAVSLHA
Sbjct: 168 MGEPLANFDATVAALKLMLDDNAYGLSRRRVTVSTSGIVPAMDRLRDACP-VALAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +L+ A Y + + I EY+MLDGVND ++HA QL +
Sbjct: 227 PNDALRDELVPINKKYPLRELLAACVRYLDRAPRDFITFEYVMLDGVNDSDEHARQLVDI 286
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP + F SS +++ F +IL + I TT RK G D+ ACG
Sbjct: 287 ARQVPCKYNLIPFNPFPQ-APFGRSSKERIRRFSEILIEA-GIVTTTRKTRGDDVDAACG 344
Query: 179 QLVVNLPDKI-SAKSTPPVTDI 199
QL + DK + T P+ ++
Sbjct: 345 QLAGQVLDKTRRTRKTIPLQEV 366
>gi|160876257|ref|YP_001555573.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS195]
gi|217972550|ref|YP_002357301.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS223]
gi|373950343|ref|ZP_09610304.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
gi|378709457|ref|YP_005274351.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|386323818|ref|YP_006019935.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|418024003|ref|ZP_12662987.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|205829880|sp|A9KXL1.1|RLMN_SHEB9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|254807210|sp|B8E9S4.1|RLMN_SHEB2 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|160861779|gb|ABX50313.1| radical SAM enzyme, Cfr family [Shewanella baltica OS195]
gi|217497685|gb|ACK45878.1| radical SAM enzyme, Cfr family [Shewanella baltica OS223]
gi|315268446|gb|ADT95299.1| radical SAM enzyme, Cfr family [Shewanella baltica OS678]
gi|333817963|gb|AEG10629.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
BA175]
gi|353536876|gb|EHC06434.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS625]
gi|373886943|gb|EHQ15835.1| Ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS183]
Length = 373
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDAIDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND AH+L
Sbjct: 226 PNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ VNLIPFNP S + SS+ ++ F K+L Y VRK G DI A
Sbjct: 286 KLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|330817169|ref|YP_004360874.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
gi|327369562|gb|AEA60918.1| hypothetical protein bgla_1g22910 [Burkholderia gladioli BSR3]
Length = 378
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +LM A + Y + + I EY MLDGVND + HA +L +
Sbjct: 234 PNDALRDELVPLNKKYPLRELMAACQRYLTVAPRDFITFEYCMLDGVNDTDAHARELLAV 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S ++++ F +IL + + TTVRK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLLR-SKNERIKQFSQILIDA-GVVTTVRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|167581703|ref|ZP_02374577.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
TXDOH]
Length = 378
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + PL +LM A + Y K + + I EY MLDGVND E HA +L L
Sbjct: 234 PNDALRDELVPLNKKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTEAHARELLAL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TT+RK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLLR-SKTEQIKRFAQVLIDA-GVVTTIRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVKDR 360
>gi|323490277|ref|ZP_08095492.1| ribosomal RNA large subunit methyltransferase N [Planococcus
donghaensis MPA1U2]
gi|323395947|gb|EGA88778.1| ribosomal RNA large subunit methyltransferase N [Planococcus
donghaensis MPA1U2]
Length = 357
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 111/183 (60%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY L++ ++++ + + ITVST GIV I + + +NLA+S+HA
Sbjct: 162 IGEPFDNYTNLMDFLKVVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IM +A+P+EKLM ++ Y + S ++I EYI+L VND + A+QL KLL
Sbjct: 222 PTNELRTRIMKINKAYPIEKLMASIDYYLEKSNRRITFEYILLRDVNDHVEEANQLAKLL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
E + + VNLIP+N + Q++ S+ + +S+F L+ I VR + G DI AC
Sbjct: 282 EDKRHLSYVNLIPYNSVDEHDQYQQSTPEAISAFYDALKKK-GINCGVRHEQGADIDAAC 340
Query: 178 GQL 180
GQL
Sbjct: 341 GQL 343
>gi|345875081|ref|ZP_08826877.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
gi|343969508|gb|EGV37720.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
LMG 5135]
Length = 362
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPLANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR +I+P + +PL +LM A + Y K + I EY+MLDGVND+ QHA++L +L
Sbjct: 222 SNDEVRDEIVPLNKKYPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQA-GLVVTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|345428624|ref|YP_004821740.1| hypothetical protein PARA_00390 [Haemophilus parainfluenzae T3T1]
gi|419802385|ref|ZP_14327572.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK262]
gi|419846048|ref|ZP_14369306.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK2019]
gi|301154683|emb|CBW14146.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
gi|385190247|gb|EIF37695.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK262]
gi|386414678|gb|EIJ29230.1| 23S rRNA m2A2503 methyltransferase [Haemophilus parainfluenzae
HK2019]
Length = 382
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 175 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDMLR-DKIDVALAISLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + ++ LM+++ Y + S K+ IEY++LD VND +HAHQL
Sbjct: 234 PNDELRDEIMPINKKYNIKMLMDSVHRYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLA 293
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ +V FQK L Y VRK G DI A
Sbjct: 294 QVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKTRGDDIDAA 351
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 352 CGQLAGDVIDR 362
>gi|238921042|ref|YP_002934557.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
gi|259491987|sp|C5BET4.1|RLMN_EDWI9 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|238870611|gb|ACR70322.1| radical SAM enzyme, Cfr family [Edwardsiella ictaluri 93-146]
Length = 390
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+T+ST G+V A++K D + LA+SLHA
Sbjct: 184 MGEPLLNLTNVIPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDTIDVALAISLHA 242
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + ++ + +++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 243 PNDTIRDEIVPINRKYNIDMFLGSVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 302
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP + F SS+ ++ F K+L Y VRK G DI A
Sbjct: 303 ECLKDTPCKINLIPWNPFPG-APFGRSSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 360
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 361 CGQLAGEVIDR 371
>gi|416218218|ref|ZP_11624766.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|416237493|ref|ZP_11631003.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
gi|326559876|gb|EGE10276.1| Cfr family radical SAM protein [Moraxella catarrhalis 7169]
gi|326569638|gb|EGE19690.1| Cfr family radical SAM protein [Moraxella catarrhalis BC1]
Length = 395
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 116/192 (60%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M F +S +R+T+ST G+V + D+ + LA+SLHA
Sbjct: 188 MGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDI-DVALAISLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQK--IFIEYIMLDGVNDEEQHAHQL 115
P ++R +++P + +PL+ L+ A K Y +N + K I IEY+ML GVND ++HAHQL
Sbjct: 247 PNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQL 306
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ +NLIPFNP R SS++++ +F IL + T+R+ G DI
Sbjct: 307 VDLLKDLPSKINLIPFNPFPHAPYGR-SSNNRIHAFSHILNQA-GFVCTIRQTRGDDIDA 364
Query: 176 ACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 365 ACGQLVGQVADR 376
>gi|262274790|ref|ZP_06052601.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
gi|262221353|gb|EEY72667.1| ribosomal RNA large subunit methyltransferase N [Grimontia hollisae
CIP 101886]
Length = 373
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 121/205 (59%), Gaps = 9/205 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ +M L + +S +R+TVST G+V + + + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALNLMLDDLGYGLSKRRVTVSTSGVVSGLEQMIGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + +E + +++ Y +S + ++ +EYI+LD VND+ +HA QL
Sbjct: 226 PNDELRSQIMPINDRYDIETFLASVRRYIASSNANRGRVTVEYILLDHVNDDMEHARQLA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y+ VRK G DI A
Sbjct: 286 ELLKDTPAKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYDYTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDKISAKSTPPVTDIED 201
CGQLV ++ D+ K T +IE+
Sbjct: 344 CGQLVGDVIDR--TKRTQNRLNIEE 366
>gi|115379954|ref|ZP_01467009.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
gi|115363034|gb|EAU62214.1| radical SAM enzyme, Cfr family [Stigmatella aurantiaca DW4/3-1]
Length = 384
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY A +EAV I+ GL + P+ IT+STVG+V I + + + LAVSL
Sbjct: 193 MGEPLHNYDATLEAVDILVDPRGL--AIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSL 250
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H R ++P + +PL +LM+A + Y + ++IF E+ ++ G ND AH LG+
Sbjct: 251 HGATDAERAALVPVGKRWPLNELMDACRYYSEKRGRRIFFEWTLIAGQNDTVDQAHTLGQ 310
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ + VN+IP NP S+ + V +FQ++L SY + +TVR++ G DI C
Sbjct: 311 LLKGMEAHVNVIPLNPTVGFGGT-PSTPEAVRAFQQVLT-SYGLPSTVRQRRGIDIDAGC 368
Query: 178 GQL 180
GQL
Sbjct: 369 GQL 371
>gi|87118480|ref|ZP_01074379.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
gi|86166114|gb|EAQ67380.1| radical SAM enzyme, Cfr family protein [Marinomonas sp. MED121]
Length = 378
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 118/191 (61%), Gaps = 8/191 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+A+ +M + +S +R+T+ST G+V I + ++ ++LA+SLHA
Sbjct: 177 MGEPLMNFEPVVDAMTLMMDDNAYGMSKRRVTLSTSGVVPKIYEL-AERTDVSLAISLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKN--SQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R ++P + +P+ +L+ A + Y + ++ I IEY M+ GVND E+ A L K
Sbjct: 236 PTNELRDVLVPINKKYPINELLGACQHYLTSLPDKRHITIEYTMMAGVNDSEEQARALSK 295
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGA 176
LL+T + +NLIPFNP + S + S+++V FQK+L Y + TVR G DI A
Sbjct: 296 LLKTLECKINLIPFNPFPN-SGYDKPSNNQVRRFQKVLADDGYTV--TVRTTRGDDIDAA 352
Query: 177 CGQLVVNLPDK 187
CGQLV + DK
Sbjct: 353 CGQLVGDFHDK 363
>gi|417958218|ref|ZP_12601134.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
gi|343967280|gb|EGV35529.1| ribosomal RNA large subunit methyltransferase N [Neisseria weaveri
ATCC 51223]
Length = 362
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPLANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR +I+P + +PL +LM A + Y K + I EY+MLDGVND+ QHA++L +L
Sbjct: 222 SNDEVRDEIVPLNKKYPLRELMAACQRYLVKAPRDFITFEYVMLDGVNDKPQHAYELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRIFRDILQQA-GLVVTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|373469057|ref|ZP_09560274.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371765149|gb|EHO53495.1| 23S rRNA m2A2503 methyltransferase [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 351
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP++NY +V+ VRI++ + +S + ITVST GIV I + + + LA+SLHAP
Sbjct: 158 GEPMDNYENIVKFVRIISSEMGLNISQRNITVSTCGIVPKIRQLADEGLNITLALSLHAP 217
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R IMP A + L+ +++A Y K + +++ EY ++ GVND + A +L KL+
Sbjct: 218 NDEIRKTIMPVANKYALKDVISACDYYFKKTGRRVSYEYSLVAGVNDNIEEAKKLVKLVN 277
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
+ +NLIP NPI F+ S K+ +F++ L + TVR++MG+DI GACGQL
Sbjct: 278 GRNIHINLIPVNPIKE-RDFKQSDKLKIKAFREFLEKK-GVNATVRREMGRDIDGACGQL 335
>gi|406977258|gb|EKD99451.1| hypothetical protein ACD_22C00256G0024 [uncultured bacterium]
Length = 350
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 110/186 (59%), Gaps = 8/186 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP N L EA++I+T +S +I+VSTVG+V I + + P +NLA SLH
Sbjct: 160 MGEPFAN-PNLWEAIKILTDKDKIGISRHKISVSTVGLVPGIERLTKEFPQINLAFSLHT 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +D R ++MP +A+ +E +M A+K Y ++ K+FI Y +++G ND +HA L L+
Sbjct: 219 PFRDQRAELMPITKAYSIETVMEAVKNYVLSTNNKVFIAYALMEGTNDSLEHAKALVSLI 278
Query: 120 -----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+++ VNLI FNP ++F+ S +V F +I+ + I+ T+R+ G DI
Sbjct: 279 KKQGAKSYLYHVNLIRFNPGPGTAEFKRPSVTRVDKFMEIIEKA-GIKVTLRQSFGLDIY 337
Query: 175 GACGQL 180
ACGQL
Sbjct: 338 AACGQL 343
>gi|406941482|gb|EKD73958.1| hypothetical protein ACD_45C00125G0007 [uncultured bacterium]
Length = 368
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+T+ST G+V A+ + ++ + LAVSLHA
Sbjct: 171 MGEPLLNFENVVNAMDIMLDDFAYGLSKRRVTLSTAGVVPAMYELR-NVSDVALAVSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R ++P + +PL++LM A KEY K +++ + +EY+ML G+ND ++HA QL +L
Sbjct: 230 PNDELRNVLVPLNKKYPLKELMTACKEYFKEDKRRYVTMEYVMLAGINDTDEHAQQLIRL 289
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L + VNLIPFNP + S ++ S + F++ L + I RK G I ACG
Sbjct: 290 LNGIRAKVNLIPFNPFPNTS-YQRSDAPTIDRFRETLMHA-GINAITRKTRGDAIDAACG 347
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 348 QLVGQVKDR 356
>gi|302386502|ref|YP_003822324.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
gi|302197130|gb|ADL04701.1| radical SAM enzyme, Cfr family [Clostridium saccharolyticum WM1]
Length = 350
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 111/182 (60%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEPL+NY LV+ VR++T GL +S + ITVST GIV I K + + LA+SLH
Sbjct: 160 GEPLDNYDHLVQFVRLLTDENGL--NISQRNITVSTCGIVPGILKLAEEDLQITLALSLH 217
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +VR +MP A FPL+ +++A + Y + + +++ EY ++ GVND + A L L
Sbjct: 218 APNDEVRKTLMPVANRFPLKDVLDACQTYFEKTGRRLTFEYSLVSGVNDNLKEASALAAL 277
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP NPI F S + +F+ +L + I T+R++MG+DI+GACG
Sbjct: 278 LKGQHGHVNLIPVNPIKE-RNFVQSDRKAIEAFKNLLEKN-GINVTIRREMGRDINGACG 335
Query: 179 QL 180
QL
Sbjct: 336 QL 337
>gi|240950291|ref|ZP_04754566.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
gi|240295193|gb|EER46001.1| hypothetical protein AM305_03483 [Actinobacillus minor NM305]
Length = 386
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM + +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 180 MGEPLLNVNNVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDGLREKI-DVALAISLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ L++++ +Y + S K+ IEY+MLD +NDE HAHQL
Sbjct: 239 PNDEIRDEIVPINKKYNIKMLIDSVNKYLEVSNANHGKVTIEYVMLDHINDEVDHAHQLA 298
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIP+NP + + SS+ ++ FQK L Y T+RK G DI A
Sbjct: 299 KVLKNTPCKINLIPWNPFPE-APYAKSSNSRIDRFQKALM-EYGFTVTIRKTRGDDIDAA 356
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 357 CGQLAGDVIDR 367
>gi|163802471|ref|ZP_02196364.1| hypothetical protein 1103602000590_AND4_19477 [Vibrio sp. AND4]
gi|159173772|gb|EDP58587.1| hypothetical protein AND4_19477 [Vibrio sp. AND4]
Length = 375
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + K+ +EY++LD +ND+ HA +L
Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHINDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|218295831|ref|ZP_03496611.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
gi|218243569|gb|EED10097.1| radical SAM enzyme, Cfr family [Thermus aquaticus Y51MC23]
Length = 349
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +++A+R+M +SP+RIT+STVGI I + + G+ LA+SLHA
Sbjct: 152 MGEPLLNLTNVLKAIRVMLHPKALAMSPRRITLSTVGIPRGILRLAEEDVGVRLALSLHA 211
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R +I+P A +P+ ++M A++ Y + +++++ EY +L G+ND A L KLL
Sbjct: 212 PDDETRRKIIPTAHRYPIAEIMAAVRRYYERTKRRVTFEYTLLKGLNDHLWQARLLAKLL 271
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIPFNP + + + + +F + LR + T++R G+D+ ACGQ
Sbjct: 272 KGISAHVNLIPFNPWEN-APVEGTPKAGILAFAEELR-RLGVSTSIRWSRGRDVGAACGQ 329
Query: 180 LVVNLPDKISAKSTPPVTD 198
L + P ++ TP + D
Sbjct: 330 LALKAPKALT--FTPLLED 346
>gi|183599740|ref|ZP_02961233.1| hypothetical protein PROSTU_03244 [Providencia stuartii ATCC 25827]
gi|386741991|ref|YP_006215170.1| ribosomal RNA large subunit methyltransferase N [Providencia
stuartii MRSN 2154]
gi|188022000|gb|EDU60040.1| 23S rRNA m2A2503 methyltransferase [Providencia stuartii ATCC
25827]
gi|384478684|gb|AFH92479.1| ribosomal RNA large subunit methyltransferase N [Providencia
stuartii MRSN 2154]
Length = 393
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 187 MGEPLLNLNNVVPAMEIMMDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P D+R I+P + + +E +++++ Y S ++ +EY+MLD +ND + AHQL
Sbjct: 246 PTDDIRDDIVPINKKYNIETFLSSVRRYLSKSNANGGRVTVEYVMLDHINDSIEQAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 306 ECLKDTPSKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 364 CGQLAGEVIDR 374
>gi|148997156|ref|ZP_01824810.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
SP11-BS70]
gi|168575427|ref|ZP_02721363.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
gi|194397178|ref|YP_002037414.1| ribosomal RNA large subunit methyltransferase N [Streptococcus
pneumoniae G54]
gi|307067370|ref|YP_003876336.1| putative Fe-S-cluster redox enzyme [Streptococcus pneumoniae AP200]
gi|417698190|ref|ZP_12347363.1| radical SAM superfamily protein [Streptococcus pneumoniae GA41317]
gi|418148198|ref|ZP_12784963.1| radical SAM superfamily protein [Streptococcus pneumoniae GA13856]
gi|419452822|ref|ZP_13992796.1| 23S rRNA methyltransferase [Streptococcus pneumoniae EU-NP03]
gi|419470728|ref|ZP_14010587.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA07914]
gi|419490695|ref|ZP_14030435.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA47179]
gi|419503577|ref|ZP_14043248.1| 23S rRNA large subunit methyltransferase [Streptococcus pneumoniae
GA47760]
gi|419505710|ref|ZP_14045371.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA49194]
gi|419532003|ref|ZP_14071521.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA47794]
gi|421274678|ref|ZP_15725510.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA52612]
gi|421313941|ref|ZP_15764531.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA47562]
gi|254807215|sp|B5E369.1|RLMN_STRP4 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|147756856|gb|EDK63896.1| hypothetical protein CGSSp11BS70_10350 [Streptococcus pneumoniae
SP11-BS70]
gi|183578600|gb|EDT99128.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae MLV-016]
gi|194356845|gb|ACF55293.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
G54]
gi|306408907|gb|ADM84334.1| Predicted Fe-S-cluster redox enzyme [Streptococcus pneumoniae
AP200]
gi|332202631|gb|EGJ16700.1| radical SAM superfamily protein [Streptococcus pneumoniae GA41317]
gi|353812873|gb|EHD93106.1| radical SAM superfamily protein [Streptococcus pneumoniae GA13856]
gi|379545444|gb|EHZ10583.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA07914]
gi|379594274|gb|EHZ59084.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA47179]
gi|379607624|gb|EHZ72370.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA49194]
gi|379608759|gb|EHZ73504.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA47794]
gi|379609175|gb|EHZ73916.1| 23S rRNA large subunit methyltransferase [Streptococcus pneumoniae
GA47760]
gi|379627406|gb|EHZ92018.1| 23S rRNA methyltransferase [Streptococcus pneumoniae EU-NP03]
gi|395875406|gb|EJG86487.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA52612]
gi|395914441|gb|EJH25285.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA47562]
Length = 361
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELTELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|410473483|ref|YP_006896764.1| hypothetical protein BN117_2930 [Bordetella parapertussis Bpp5]
gi|408443593|emb|CCJ50263.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
Length = 382
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 178 MGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PL L+ A + Y ++ + I EY MLDG+ND +QHA +L +L
Sbjct: 237 PNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQL 296
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ +NLIPFNP S + S +V F + L + I TTVRK G DI ACG
Sbjct: 297 ARQVRCKLNLIPFNPF-PASGLKRSPSARVRVFAQRLMDA-GIVTTVRKTRGDDIDAACG 354
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 355 QLAGEVRDR 363
>gi|296113393|ref|YP_003627331.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|416157002|ref|ZP_11604848.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|416225542|ref|ZP_11626890.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|416231838|ref|ZP_11628904.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|416235984|ref|ZP_11630379.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|416242273|ref|ZP_11633309.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|416246881|ref|ZP_11635250.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|416249828|ref|ZP_11636925.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|416255365|ref|ZP_11639202.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|421780199|ref|ZP_16216689.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
gi|295921087|gb|ADG61438.1| Cfr family radical SAM protein [Moraxella catarrhalis BBH18]
gi|326559237|gb|EGE09668.1| Cfr family radical SAM protein [Moraxella catarrhalis 46P47B1]
gi|326560775|gb|EGE11142.1| Cfr family radical SAM protein [Moraxella catarrhalis 103P14B1]
gi|326563516|gb|EGE13775.1| Cfr family radical SAM protein [Moraxella catarrhalis 12P80B1]
gi|326570119|gb|EGE20164.1| Cfr family radical SAM protein [Moraxella catarrhalis BC8]
gi|326570857|gb|EGE20881.1| Cfr family radical SAM protein [Moraxella catarrhalis BC7]
gi|326574406|gb|EGE24348.1| Cfr family radical SAM protein [Moraxella catarrhalis 101P30B1]
gi|326576000|gb|EGE25923.1| Cfr family radical SAM protein [Moraxella catarrhalis CO72]
gi|326576412|gb|EGE26321.1| Cfr family radical SAM protein [Moraxella catarrhalis O35E]
gi|407812993|gb|EKF83777.1| Cfr family radical SAM protein [Moraxella catarrhalis RH4]
Length = 395
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 116/192 (60%), Gaps = 8/192 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +V ++ +M F +S +R+T+ST G+V + D+ + LA+SLHA
Sbjct: 188 MGEPLLNYDPVVASMSLMLDDHAFGLSKRRVTLSTSGVVPKMYDLAKDI-DVALAISLHA 246
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQK--IFIEYIMLDGVNDEEQHAHQL 115
P ++R +++P + +PL+ L+ A K Y +N + K I IEY+ML GVND ++HAHQL
Sbjct: 247 PNDELRNELVPINKKYPLKDLIKAAKSYVYDENPRHKKHITIEYVMLAGVNDSDEHAHQL 306
Query: 116 GKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ +NLIPFNP R SS++++ +F IL + T+R+ G DI
Sbjct: 307 VDLLKDLPSKINLIPFNPFPHAPYGR-SSNNRIHAFSHILNQA-GFVCTIRQTRGDDIDA 364
Query: 176 ACGQLVVNLPDK 187
ACGQLV + D+
Sbjct: 365 ACGQLVGQVADR 376
>gi|169831742|ref|YP_001717724.1| radical SAM protein [Candidatus Desulforudis audaxviator MP104C]
gi|205829744|sp|B1I501.1|RLMN_DESAP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|169638586|gb|ACA60092.1| radical SAM enzyme, Cfr family [Candidatus Desulforudis audaxviator
MP104C]
Length = 318
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 111/182 (60%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF--QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
MGEPL+NY ++ V +T P+ ++S +RIT+ST G+V I K + L LA+SLH
Sbjct: 129 MGEPLDNYENTLKFVANVTA-PYGLRLSQRRITLSTCGLVPEIQKLARERLALTLAISLH 187
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++P R +PLE+L+ A EY + + +++ EYI+L GVND + A +L L
Sbjct: 188 APNNALRDTLVPVNRKYPLEQLIPACAEYARRTGRRVSFEYILLGGVNDSPELARELSDL 247
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIP NP+ S +R S + V +F+++L + ++R+++G DI ACG
Sbjct: 248 LTGLLGHVNLIPANPVPE-SGYRAPSPEAVRTFRRVLE-EGGVPVSLRRELGADIGAACG 305
Query: 179 QL 180
QL
Sbjct: 306 QL 307
>gi|94987122|ref|YP_595055.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis PHE/MN1-00]
gi|442555960|ref|YP_007365785.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
gi|123082152|sp|Q1MQJ3.1|RLMN_LAWIP RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|94731371|emb|CAJ54734.1| predicted Fe-S-cluster redox enzyme [Lawsonia intracellularis
PHE/MN1-00]
gi|441493407|gb|AGC50101.1| ribosomal RNA large subunit methyltransferase N [Lawsonia
intracellularis N343]
Length = 358
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 109/184 (59%), Gaps = 10/184 (5%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN-LAVS 56
MGEPL N L A+ I+ GL F S +RITVST GI I + GL LA+S
Sbjct: 168 MGEPLLNLTELTRALHILHSEKGLNF--SARRITVSTCGIKKGIQALSEN--GLAFLALS 223
Query: 57 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
LHA Q++R IMP A + L++L++ LK Y ++KI EY++L G+ND +HA +L
Sbjct: 224 LHASNQELRSTIMPKAAKWDLKELIDTLKNYSLKKREKITFEYLLLGGINDSPEHAKELA 283
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL+ + +NLIP+NP + +++ + FQK+L S I T +RK GQDI+ A
Sbjct: 284 KLITDIKGKLNLIPYNP-AQGQPYLKPTEENILKFQKVL-WSKGIVTILRKSKGQDINAA 341
Query: 177 CGQL 180
CGQL
Sbjct: 342 CGQL 345
>gi|421565597|ref|ZP_16011370.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|433536930|ref|ZP_20493435.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
gi|402344032|gb|EJU79174.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3081]
gi|432273866|gb|ELL28963.1| 23S rRNA methyltransferase [Neisseria meningitidis 77221]
Length = 364
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|381183406|ref|ZP_09892143.1| ribosomal RNA large subunit methyltransferase N [Listeriaceae
bacterium TTU M1-001]
gi|380316698|gb|EIA20080.1| ribosomal RNA large subunit methyltransferase N [Listeriaceae
bacterium TTU M1-001]
Length = 390
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY ++ +R++ GL + + ITVST G+ I F ++ +NLAVSL
Sbjct: 163 IGEPFDNYDNVMSFLRVVNHDKGLA--IGARHITVSTSGLAPRIKDFANEDFQVNLAVSL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP D+R +IM R F +E LM A++ Y + + +++ EYIML VND Q A +L
Sbjct: 221 HAPNNDIRTKIMRINRTFSIETLMEAIEYYIEKTNRRVTYEYIMLRDVNDSRQEAQELAN 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL+ + VNLIP+NP+ +Q+ S + V +F +L+ + + +R++ G DI
Sbjct: 281 LLKNHKKLAYVNLIPYNPVDEHNQYERSRKEDVLAFYDVLKKN-GVNCVIRREHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|320527283|ref|ZP_08028468.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
gi|320132307|gb|EFW24852.1| radical SAM enzyme, Cfr family [Solobacterium moorei F0204]
Length = 346
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Query: 2 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY ++ I+ + L + + IT+ST GIV I F NLA+SLHAP
Sbjct: 160 GEPFDNYDNVMRFCEIINSDLGLAIGARHITISTCGIVPRIKDFAKGHYQYNLAISLHAP 219
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R ++MP +A+PL+ LM+AL EY + + ++I EYI+L GVND + HA QL L+
Sbjct: 220 NDELRRKLMPIDQAYPLDVLMDALHEYSEGNNRRITFEYILLHGVNDTDAHAIQLANLIR 279
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVS-SFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VNLIP+N + S+++KV+ F +L + ++ T+R + G DI ACGQ
Sbjct: 280 GMNAYVNLIPYNQVDENGY--VSTNEKVALHFYDVLM-KHGVKATLRSKHGDDIDAACGQ 336
Query: 180 L 180
L
Sbjct: 337 L 337
>gi|237650461|ref|ZP_04524713.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
CCRI 1974]
gi|237821909|ref|ZP_04597754.1| radical SAM enzyme, Cfr family protein [Streptococcus pneumoniae
CCRI 1974M2]
Length = 361
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELTELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|85859749|ref|YP_461951.1| radical SAM protein [Syntrophus aciditrophicus SB]
gi|123752486|sp|Q2LUM5.1|RLMN_SYNAS RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|85722840|gb|ABC77783.1| radical SAM family enzyme [Syntrophus aciditrophicus SB]
Length = 348
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL NY ++A+RI+T GL F S ++IT+ST GI I + DL +NLA+SL
Sbjct: 162 MGEPLANYRNTLKAIRIITSDYGLGF--STRKITLSTSGITPMIEQLGRDL-CINLAISL 218
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
+AP +R ++MP R +PL++L+ A + Y ++ + EYI++DGVN HA L +
Sbjct: 219 NAPTDSIRSELMPVNRKYPLDRLLQACRNYPMPGRRMLTFEYILIDGVNSSPAHAEMLCR 278
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ + +NLI FN F+T S++ V +FQ+IL ++ +R G+DI AC
Sbjct: 279 LLKGIRCKLNLIRFNEFPDCP-FKTPSEETVLAFQQIL-VKHHYTAIIRASRGRDILAAC 336
Query: 178 GQL 180
GQL
Sbjct: 337 GQL 339
>gi|310819181|ref|YP_003951539.1| ribosomal RNA large subunit methyltransferase n [Stigmatella
aurantiaca DW4/3-1]
gi|309392253|gb|ADO69712.1| Ribosomal RNA large subunit methyltransferase N [Stigmatella
aurantiaca DW4/3-1]
Length = 360
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+NY A +EAV I+ GL + P+ IT+STVG+V I + + + LAVSL
Sbjct: 169 MGEPLHNYDATLEAVDILVDPRGL--AIGPRFITLSTVGVVPGIRRLADEDRPVQLAVSL 226
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H R ++P + +PL +LM+A + Y + ++IF E+ ++ G ND AH LG+
Sbjct: 227 HGATDAERAALVPVGKRWPLNELMDACRYYSEKRGRRIFFEWTLIAGQNDTVDQAHTLGQ 286
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ + VN+IP NP S+ + V +FQ++L SY + +TVR++ G DI C
Sbjct: 287 LLKGMEAHVNVIPLNPTVGFGGT-PSTPEAVRAFQQVLT-SYGLPSTVRQRRGIDIDAGC 344
Query: 178 GQL 180
GQL
Sbjct: 345 GQL 347
>gi|33602154|ref|NP_889714.1| hypothetical protein BB3178 [Bordetella bronchiseptica RB50]
gi|427814221|ref|ZP_18981285.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|81579923|sp|Q7WHM8.1|RLMN_BORBR RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|33576592|emb|CAE33670.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|410565221|emb|CCN22774.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
Length = 382
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 112/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 178 MGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCP-VALAVSLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +PL L+ A + Y ++ + I EY MLDG+ND +QHA +L +L
Sbjct: 237 PNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQL 296
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ +NLIPFNP S + S +V F + L + I TTVRK G DI ACG
Sbjct: 297 ARQVRCKLNLIPFNPF-PASGLKRSPSARVRVFAQRLMDA-GIVTTVRKTRGDDIDAACG 354
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 355 QLAGEVRDR 363
>gi|357012409|ref|ZP_09077408.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
elgii B69]
Length = 361
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP NY A+++ +++M GL + + ITVST GIV I +F + +NLA+S+
Sbjct: 172 IGEPFENYDAVMKFLKVMIHPKGL--NIGQRHITVSTSGIVPNIYRFADEDTQINLAISI 229
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R ++MP R +P +L+ A + Y + ++I EY ++ GVND+ +HA +L K
Sbjct: 230 HAPNDVLRSKLMPVNRRYPFAELIEACQYYVAKTGRRITFEYALMGGVNDQAEHAEELAK 289
Query: 118 LLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L+ F + VNLIP N + RT +D + +FQ+IL + I T+R++ G DI+ A
Sbjct: 290 VLKAFPMAHVNLIPVNFVSERDYVRTPRND-IFTFQRILERN-KINATIRREQGSDIAAA 347
Query: 177 CGQL 180
CGQL
Sbjct: 348 CGQL 351
>gi|430750392|ref|YP_007213300.1| 2-vinyl bacteriochlorophyllide hydratase [Thermobacillus composti
KWC4]
gi|430734357|gb|AGA58302.1| 23S rRNA m2A2503 methyltransferase [Thermobacillus composti KWC4]
Length = 347
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP NY A ++ +RI+T + + ITVST GIV I +F + +NLA+S+HAP
Sbjct: 161 GEPFENYDATMKFLRIVTHAKGLNIGQRHITVSTSGIVPNIYRFADENTQINLAISIHAP 220
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+R ++MP R +P +++M A++ Y + +++ EY ++ GVND +HA +L +L
Sbjct: 221 NDALRSKLMPVNRRYPFDEVMEAIRYYIAKTGRRVTFEYALIGGVNDRPEHAEELADVLN 280
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP N + RT +D + +F +IL+ S I T+R++ G DI+ ACGQL
Sbjct: 281 GMLCHVNLIPVNYVPERKYVRTPRED-IFAFHRILQ-SRGINATIRREQGHDIAAACGQL 338
>gi|163856328|ref|YP_001630626.1| hypothetical protein Bpet2017 [Bordetella petrii DSM 12804]
gi|205829671|sp|A9IK57.1|RLMN_BORPD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|163260056|emb|CAP42357.1| conserved hypothetical protein [Bordetella petrii]
Length = 381
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 119/207 (57%), Gaps = 10/207 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY L+ A+R+M + +S +R+TVST G+V +++ D P + LAVSLHA
Sbjct: 177 MGEPLLNYDQLLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSRDCP-VALAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P + +PL +L+ A + Y ++ + I EY MLDG+ND +QHA L ++
Sbjct: 236 PTDALRDELVPLNKKYPLAELLAACERYLASAPRDFITFEYCMLDGINDTDQHARALIQV 295
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ +NLIPFNP S + S +V F + L + I TTVRK G DI ACG
Sbjct: 296 ARQVRCKLNLIPFNPF-PASGLKRSPSARVKVFAQRLMDA-GIVTTVRKTRGDDIDAACG 353
Query: 179 QLVVNLPDKI-----SAKSTPPVTDIE 200
QL + D+ +A T P+ ++
Sbjct: 354 QLAGEVRDRTRVAQRNAGRTIPIAQVQ 380
>gi|121635020|ref|YP_975265.1| hypothetical protein NMC1245 [Neisseria meningitidis FAM18]
gi|254805109|ref|YP_003083330.1| hypothetical protein NMO_1149 [Neisseria meningitidis alpha14]
gi|385340216|ref|YP_005894088.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|416177921|ref|ZP_11610290.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|416191949|ref|ZP_11616330.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|416203929|ref|ZP_11620162.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|421538259|ref|ZP_15984436.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|421544602|ref|ZP_15990678.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|421546717|ref|ZP_15992762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|421548969|ref|ZP_15994993.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|421552920|ref|ZP_15998892.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|433467457|ref|ZP_20424911.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|433492708|ref|ZP_20449801.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|433494842|ref|ZP_20451910.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|433497009|ref|ZP_20454047.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|433499071|ref|ZP_20456080.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|433501047|ref|ZP_20458033.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|433503188|ref|ZP_20460149.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
gi|205829823|sp|A1KUD6.1|RLMN_NEIMF RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|120866726|emb|CAM10479.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254668651|emb|CBA06309.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|325132491|gb|EGC55184.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M6190]
gi|325138265|gb|EGC60834.1| radical SAM enzyme, Cfr family [Neisseria meningitidis ES14902]
gi|325142519|gb|EGC64920.1| radical SAM enzyme, Cfr family [Neisseria meningitidis 961-5945]
gi|325198460|gb|ADY93916.1| radical SAM enzyme, Cfr family [Neisseria meningitidis G2136]
gi|402317078|gb|EJU52617.1| 23S rRNA methyltransferase [Neisseria meningitidis 93003]
gi|402322962|gb|EJU58412.1| 23S rRNA methyltransferase [Neisseria meningitidis NM183]
gi|402323793|gb|EJU59235.1| 23S rRNA methyltransferase [Neisseria meningitidis NM140]
gi|402325648|gb|EJU61057.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|402330099|gb|EJU65448.1| 23S rRNA methyltransferase [Neisseria meningitidis NM576]
gi|432202291|gb|ELK58355.1| 23S rRNA methyltransferase [Neisseria meningitidis 87255]
gi|432228494|gb|ELK84194.1| 23S rRNA methyltransferase [Neisseria meningitidis NM586]
gi|432230045|gb|ELK85724.1| 23S rRNA methyltransferase [Neisseria meningitidis NM762]
gi|432233502|gb|ELK89129.1| 23S rRNA methyltransferase [Neisseria meningitidis M7089]
gi|432234905|gb|ELK90525.1| 23S rRNA methyltransferase [Neisseria meningitidis M7124]
gi|432236338|gb|ELK91947.1| 23S rRNA methyltransferase [Neisseria meningitidis NM174]
gi|432239953|gb|ELK95497.1| 23S rRNA methyltransferase [Neisseria meningitidis NM126]
Length = 364
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|374324699|ref|YP_005077828.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
terrae HPL-003]
gi|357203708|gb|AET61605.1| ribosomal RNA large subunit methyltransferase N [Paenibacillus
terrae HPL-003]
Length = 362
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +R M GL + + ITVST GIV I KF + +NLA+S+H
Sbjct: 177 GEPFENYEATMTFLRTMIHEKGL--NIGQRHITVSTSGIVPNIYKFADEDTQINLAISIH 234
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R +P + +M +L+ Y + ++I EY ++ GVND+ +HA +L +
Sbjct: 235 APNDALRSKLMPVNRRYPFQDVMESLRYYLAKTGRRISFEYALIGGVNDQAEHAEELADV 294
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP N + RTS D + +FQ+IL + T+R++ G DI+ ACG
Sbjct: 295 LKDMLCHVNLIPVNHVPERKYVRTSRSD-IFNFQRIL-AEKGVNVTIRREQGHDIAAACG 352
Query: 179 QL 180
QL
Sbjct: 353 QL 354
>gi|385851095|ref|YP_005897610.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|325205918|gb|ADZ01371.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M04-240196]
gi|389605577|emb|CCA44494.1| ribosomal RNA large subunit methyltransferase N [Neisseria
meningitidis alpha522]
Length = 364
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|299530509|ref|ZP_07043929.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
gi|298721485|gb|EFI62422.1| radical SAM enzyme, Cfr family protein [Comamonas testosteroni S44]
Length = 369
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 117/197 (59%), Gaps = 10/197 (5%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+ALV A+R+M + +S +R+TVST G+V +++ D + LAVSLHA
Sbjct: 160 MGEPLQNYSALVPALRVMLDDHGYGLSRRRVTVSTSGVVPMMDRLSQDC-AVALAVSLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +P+ +L++A + Y + + + I EY MLDGVND+ +HA QL +L
Sbjct: 219 PNDPLRDNLVPLNKKYPIAELLDACERYLEFAPRDFITFEYCMLDGVNDQLEHARQLIEL 278
Query: 119 LET-----FQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+ NLIPFNP + R+ S +V+ F +L + I TTVRK G DI
Sbjct: 279 VRARGDGKSWCKFNLIPFNPFPASGLLRSPS-ARVTEFATLLSNA-GIVTTVRKTRGDDI 336
Query: 174 SGACGQLVVNLPDKISA 190
ACGQL ++ D+ A
Sbjct: 337 DAACGQLAGDVKDRTRA 353
>gi|292670255|ref|ZP_06603681.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
gi|292648207|gb|EFF66179.1| cfr family radical SAM enzyme [Selenomonas noxia ATCC 43541]
Length = 346
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL NY +V A+R++ +S + IT+ST GIV I + + ++L++SLHAP
Sbjct: 160 GEPLENYDNVVAALRLLHEDYTIGLSYRGITLSTSGIVPGIERLAEEGIPISLSISLHAP 219
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+++R +IMP R +PL ++ A Y + +++++ EYI++ VND + A QL KLL
Sbjct: 220 TEELRSEIMPVNRMYPLADVLRAACFYAERTKRRVTYEYILIRDVNDGPRDAEQLAKLLR 279
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NP+ S FR + FQKIL +I T+R++MG DI ACGQL
Sbjct: 280 GQLASVNLIPINPVAERSLFR-PDKAAIRRFQKIL-AQRHITATLRREMGTDIQAACGQL 337
>gi|374321186|ref|YP_005074315.1| hypothetical protein HPL003_06645 [Paenibacillus terrae HPL-003]
gi|357200195|gb|AET58092.1| hypothetical protein HPL003_06645 [Paenibacillus terrae HPL-003]
Length = 365
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 112/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L + +R++ GL + P+ ITVST G+ I +F +NLA+SL
Sbjct: 163 IGEPFDNFVNLSDFIRVIKDHKGLA--IGPRHITVSTSGLADKIIEFADSDLHVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP + R +IM RA P+E+LM A+ Y + ++I +EYI+L +ND ++HA +L +
Sbjct: 221 HAPNNETRTRIMKINRAIPIEELMQAIDYYLDKTNRRITLEYILLKDINDSKEHALELAE 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
L+ + + VNLIP+NP+ SQ++ S + ++ F IL+ I +VR + G DI
Sbjct: 281 LVGHRRNLANVNLIPYNPVDEHSQYQRSESESITGFYDILK-KQGISCSVRLEHGVDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|323487018|ref|ZP_08092330.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
WAL-14163]
gi|323692060|ref|ZP_08106307.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
gi|355630344|ref|ZP_09050803.1| ribosomal RNA large subunit methyltransferase N [Clostridium sp.
7_3_54FAA]
gi|323399666|gb|EGA92052.1| hypothetical protein HMPREF9474_04081 [Clostridium symbiosum
WAL-14163]
gi|323503860|gb|EGB19675.1| radical SAM enzyme [Clostridium symbiosum WAL-14673]
gi|354818692|gb|EHF03159.1| ribosomal RNA large subunit methyltransferase N [Clostridium sp.
7_3_54FAA]
Length = 350
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 111/187 (59%), Gaps = 3/187 (1%)
Query: 2 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL+NY L+ +R++TG +S + +TVST GIV I K + + LA+SLHAP
Sbjct: 160 GEPLDNYDNLIRFIRLLTGEGGLNISQRNVTVSTCGIVPGIRKLAEEDLQITLALSLHAP 219
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+VR +MP A+ + L ++M+A + Y + + +++ EY ++ GVND A L +L++
Sbjct: 220 NDEVRRTLMPVAKRYGLNEVMDACRYYFEKTGRRLTFEYSLVQGVNDNLDEAKALVRLIK 279
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP NPI ++ S + +F+ L S I TVR++MG+DI GACGQL
Sbjct: 280 DQHGHVNLIPVNPIKE-REYVQSGRQAIEAFKNQLEKS-GINVTVRREMGRDIDGACGQL 337
Query: 181 VVNLPDK 187
+ DK
Sbjct: 338 RKSFIDK 344
>gi|315651136|ref|ZP_07904168.1| cfr family radical SAM enzyme [Lachnoanaerobaculum saburreum DSM
3986]
gi|315486601|gb|EFU76951.1| cfr family radical SAM enzyme [Lachnoanaerobaculum saburreum DSM
3986]
Length = 352
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 107/180 (59%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL+NY +V+ VRI++ + +S + ITVST GIV I K + + LA+SLHAP
Sbjct: 159 GEPLDNYDNIVKFVRIISSDMGLNISQRNITVSTCGIVPKIKKLADEGLNITLALSLHAP 218
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R IMP A + L+ ++ A Y K + +++ EY ++ GVND + A L +L+
Sbjct: 219 NDEIRKTIMPVANKYALKDIIAACDYYFKKTGRRVSYEYSLVAGVNDNMEEAKSLVRLVN 278
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
+ +NLIP NPI F+ S K+ +F+ L + T+R++MG+DI GACGQL
Sbjct: 279 GRNIHINLIPVNPIKE-RDFKQSDKLKIKAFRDFLEKK-GVNATIRREMGRDIDGACGQL 336
>gi|161870181|ref|YP_001599351.1| hypothetical protein NMCC_1221 [Neisseria meningitidis 053442]
gi|205829821|sp|A9LZN6.1|RLMN_NEIM0 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|161595734|gb|ABX73394.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 364
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDRAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|167836392|ref|ZP_02463275.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
MSMB43]
gi|424904625|ref|ZP_18328135.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
MSMB43]
gi|390930603|gb|EIP88005.1| radical SAM enzyme, Cfr family protein [Burkholderia thailandensis
MSMB43]
Length = 378
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY+A+V A+R+M + +S +R+T+ST G+V +++ ++LP + LAVSLHA
Sbjct: 175 MGEPLLNYSAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGAELP-VALAVSLHA 233
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R PL +LM A + Y K + + I EY MLDGVND + HA +L L
Sbjct: 234 PNDALRDELVPLNRKHPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDTQAHARELLAL 293
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + I TT+RK G DI ACG
Sbjct: 294 TRDVPCKFNLIPFNPFPESGLVR-SKTEQIKRFAQVLIDA-GIVTTIRKTRGDDIDAACG 351
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 352 QLAGAVRDR 360
>gi|358052140|ref|ZP_09146066.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
simiae CCM 7213]
gi|357258368|gb|EHJ08499.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
simiae CCM 7213]
Length = 364
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 107/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ ++I+ + + ITVST GI+ I F + +N AVSLHA
Sbjct: 176 IGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
DVR ++MP RA+ +EKL+ A+K YQ+ + +++ EY + GVND+ +HA +L L+
Sbjct: 236 AKDDVRSRLMPINRAYNVEKLIEAIKYYQEKTNRRVTFEYGLFGGVNDQLEHARELAHLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +T DD + F+K L+ + T+R++ G DI ACGQ
Sbjct: 296 KDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGVNATIRREQGSDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|322831763|ref|YP_004211790.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
gi|321166964|gb|ADW72663.1| radical SAM enzyme, Cfr family [Rahnella sp. Y9602]
Length = 399
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + ++ + A++ Y S Q ++ IEY+MLD +ND +HAH+L
Sbjct: 251 PNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y VRK G DI A
Sbjct: 311 ERLKNTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTVIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 369 CGQLAGDVIDR 379
>gi|349611007|ref|ZP_08890323.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
gi|348615037|gb|EGY64569.1| ribosomal RNA large subunit methyltransferase N [Neisseria sp.
GT4A_CT1]
Length = 364
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|313203119|ref|YP_004041776.1| 23S rRNA m(2)a-2503 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312442435|gb|ADQ78791.1| 23S rRNA m(2)A-2503 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 350
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 111/181 (61%), Gaps = 4/181 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL+N A+++++ +MT + SPKRITVST+GI+ A+ F + +LAVSLH+
Sbjct: 159 MGEPLDNVQAVMDSIEVMTSPWGYDWSPKRITVSTIGIIPAMMTFLENSKA-HLAVSLHS 217
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D R IMP +P+ ++++ ++ ++ SQ+++ EYIM GVND +HA++L +LL
Sbjct: 218 PFDDERRDIMPIQSVYPITEVVSNIRRWELGSQRRVSFEYIMFKGVNDTPRHANELVRLL 277
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ +NLI F+PI T+ +D V FQ L+ + T+R G+DI ACG
Sbjct: 278 NGIKCRINLIRFHPIPDTPLEGTALEDIV-DFQNRLKAK-GLTVTIRASRGEDIFAACGM 335
Query: 180 L 180
L
Sbjct: 336 L 336
>gi|153001521|ref|YP_001367202.1| ribosomal RNA large subunit methyltransferase N [Shewanella baltica
OS185]
gi|205829879|sp|A6WQQ0.1|RLMN_SHEB8 RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|151366139|gb|ABS09139.1| radical SAM enzyme, Cfr family [Shewanella baltica OS185]
Length = 373
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 113/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A ++ A+ IM F +S +R+T+ST G+V A++K D + LAVS+HA
Sbjct: 167 MGEPLLNLANVIPAMDIMLDDFGFSLSKRRVTLSTSGVVPALDKL-GDALDVALAVSIHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PL++ + ++ Y S + ++ +EY+MLD +ND AH+L
Sbjct: 226 PNDELRDILVPINKKYPLDEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ +NLIPFNP S + SS+ ++ F K+L Y VRK G DI A
Sbjct: 286 KLMKDTPCKINLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 344 CGQLAGDIRDR 354
>gi|418200413|ref|ZP_12836858.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47976]
gi|353865460|gb|EHE45369.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47976]
Length = 361
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ V I + + IT+ST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ I VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GINCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|424738861|ref|ZP_18167290.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZB2]
gi|422947345|gb|EKU41742.1| ribosomal RNA large subunit methyltransferase N [Lysinibacillus
fusiformis ZB2]
Length = 380
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 114/183 (62%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY A++ ++++ GL + + ITVST GIV I +F + +N AVSL
Sbjct: 192 IGEPFDNYDAMMNFLKVINHEKGL--NIGARHITVSTSGIVPKIYQFADEQLQINFAVSL 249
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP Q+ R ++MP ARA+ LE+LM+A++ Y K + +++ EY ++ G ND + A +L
Sbjct: 250 HAPNQEARQKLMPIARAYKLEELMDAVRYYTKKTGRRVSFEYGLMSGENDSVEIAEELSA 309
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + RTS ++ +F+K L+ + I T+R++ G DI+ AC
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSR-SQIFAFEKTLKKN-GINVTIRREQGSDIAAAC 367
Query: 178 GQL 180
GQL
Sbjct: 368 GQL 370
>gi|406881559|gb|EKD29588.1| hypothetical protein ACD_78C00346G0001, partial [uncultured
bacterium (gcode 4)]
Length = 264
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 102/185 (55%), Gaps = 4/185 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NY + ++ I +S +RITVST GI+ I K D P ++LA+SLHA
Sbjct: 75 MGEPFLNYENVRHSIEIACSQKKLDLSSRRITVSTCGIIPGIQKIAEDFPQVSLAISLHA 134
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P + R IMP + +PL LM AL Y + ++IF EYIM++G+ D ++A L LL
Sbjct: 135 PTDEARRVIMPVEQTYPLANLMEALDAYVVKTNKRIFYEYIMINGLTDRPEYAKALADLL 194
Query: 120 ETFQVVVNLIPFNP--IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
VN IP+NP S S+ +S + FQ L + + +T+R MG DI AC
Sbjct: 195 HGRLAHVNFIPYNPGEGSSDSKMLPTSKVMIKKFQDALELA-GVPSTIRHTMGDDIDAAC 253
Query: 178 GQLVV 182
GQL +
Sbjct: 254 GQLAL 258
>gi|332527850|ref|ZP_08403887.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
gi|332112427|gb|EGJ12220.1| hypothetical protein RBXJA2T_17901 [Rubrivivax benzoatilyticus JA2]
Length = 372
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYAA+V A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 162 MGEPLQNYAAVVPALRVMLDDHGYGLSRRRVTVSTSGMVAMIDRLREDCP-VALAVSLHA 220
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R +E L++A Y + + + I EY MLDGVND + A QL L
Sbjct: 221 PDDALRDMLVPINRKDGIEALLDACLRYVEAAPRDFITFEYCMLDGVNDAPEQAQQLVHL 280
Query: 119 LETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ +V NLIPFNP S + S ++V++F K+L+ + I TT+RK G DI A
Sbjct: 281 VRRRRVPCKFNLIPFNPFPE-SGLKRSPRERVTAFAKVLQDA-GIVTTIRKVRGDDIDAA 338
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 339 CGQLAGEVQDR 349
>gi|261365781|ref|ZP_05978664.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
gi|288565687|gb|EFC87247.1| radical SAM enzyme, Cfr family [Neisseria mucosa ATCC 25996]
Length = 364
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|237745509|ref|ZP_04575989.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
gi|229376860|gb|EEO26951.1| radical SAM enzyme [Oxalobacter formigenes HOxBLS]
Length = 387
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 119/197 (60%), Gaps = 9/197 (4%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A V A+++M + +S +R+TVST G+V I++ + P + LAVSLHA
Sbjct: 171 MGEPLFNFDASVNALKLMLDDNAYGLSRRRVTVSTSGVVPMIDRLAKECP-VALAVSLHA 229
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P R PL +LM A + Y + + + I EY MLDG+ND ++HA +L +L
Sbjct: 230 PSDKLRDMLVPLNRKHPLSELMAACRRYLEYAPRDFITFEYCMLDGINDTDEHAKELVEL 289
Query: 119 L----ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ + +NLIPFN I + + SSD ++S+F KIL + I TTVRK G+DI
Sbjct: 290 VKHGSDPVSCKLNLIPFNSI-PMPGLKRSSDARISAFAKILLDA-GIVTTVRKTRGEDIE 347
Query: 175 GACGQLVVNLPDKISAK 191
ACG L ++ D+ +
Sbjct: 348 AACGLLAGDVRDRTRVR 364
>gi|312127903|ref|YP_003992777.1| radical sam enzyme, cfr family [Caldicellulosiruptor hydrothermalis
108]
gi|311777922|gb|ADQ07408.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor hydrothermalis
108]
Length = 344
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 113/181 (62%), Gaps = 5/181 (2%)
Query: 2 GEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHA 59
GEP +N + + + I+ + + + IT+STVGIV I + D P +NLA+SLHA
Sbjct: 157 GEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R +++P + +P+E +M A+ Y + + +++ EY ++DGVND + A +LGK+L
Sbjct: 216 PNNSLRDKLVPINKKYPIEDIMKAVDYYIQRTNRRVTFEYALIDGVNDSIECAQELGKML 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ V VNLIP NP+ F+ S +K+ +F + LR SY I+ T+R+++G IS ACGQ
Sbjct: 276 KGKLVHVNLIPVNPVEE-KGFKRPSKEKIKTFFETLR-SYQIQVTIRRELGSSISAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|261407206|ref|YP_003243447.1| chloramphenicol/florfenicol resistance protein [Paenibacillus sp.
Y412MC10]
gi|261283669|gb|ACX65640.1| radical SAM enzyme, Cfr family [Paenibacillus sp. Y412MC10]
Length = 346
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 114/187 (60%), Gaps = 9/187 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGE L N + +A+ ++T F + +RITVST+G++ + K + P +NL SLH+
Sbjct: 155 MGEALAN-PYVFDALHLLTDPKLFGLGHRRITVSTIGLLPGVKKLTKEFPQINLTFSLHS 213
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D R ++MP FPLE++M L E+ + +++K++I YI+L G+ND +HA + LL
Sbjct: 214 PFHDQRSELMPINNHFPLEEVMTVLDEHIQQTKRKVYIAYILLRGINDSTKHAKAVADLL 273
Query: 120 E---TFQVV--VNLIPFNPIGSVSQ-FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173
+++ + VNLIP+N + SQ F S + ++ F +IL+ S I TVR Q G DI
Sbjct: 274 RERGSWEHLYHVNLIPYNSTDATSQSFVESDQNSINMFLRILK-SKGIHVTVRTQFGSDI 332
Query: 174 SGACGQL 180
+ ACGQL
Sbjct: 333 NAACGQL 339
>gi|56962848|ref|YP_174574.1| chloramphenicol/florfenicol resistance protein [Bacillus clausii
KSM-K16]
gi|81366753|sp|Q5WJ42.1|CFR_BACSK RecName: Full=Ribosomal RNA large subunit methyltransferase Cfr;
AltName: Full=23S rRNA
(adenine(2503)-C(8))-methyltransferase; AltName:
Full=23S rRNA m8A2503 methyltransferase
gi|56909086|dbj|BAD63613.1| florfenicol/chloramphenicol resistance protein [Bacillus clausii
KSM-K16]
Length = 350
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 114/186 (61%), Gaps = 8/186 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGE L N + +A+ ++ F +SP+RITVSTVGI+ I + S P +NL SLH+
Sbjct: 158 MGEALAN-VRIFDALNVLVDRQLFALSPRRITVSTVGIIPNIQRMTSSFPQMNLTFSLHS 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P D R ++MP +PL+++MN L ++ + +K++I Y+ML GVND E+HA L K +
Sbjct: 217 PFHDQRSELMPINNKYPLDQVMNVLDQHIHETGRKVYIAYVMLRGVNDSEKHAEALVKRI 276
Query: 120 ETFQ----VVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
+ VNLI +NP +G+ + + ++K+ +F ++++ S I T+R Q G++I
Sbjct: 277 LNNRYPHLYHVNLIRYNPTVGTPENYGQTIEEKLQTFYRVVK-SARIPVTIRSQFGREID 335
Query: 175 GACGQL 180
ACGQL
Sbjct: 336 AACGQL 341
>gi|241758847|ref|ZP_04756960.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|261380196|ref|ZP_05984769.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
gi|241321055|gb|EER57268.1| radical SAM enzyme, Cfr family [Neisseria flavescens SK114]
gi|284797045|gb|EFC52392.1| radical SAM enzyme, Cfr family [Neisseria subflava NJ9703]
Length = 362
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|408674051|ref|YP_006873799.1| Ribosomal RNA large subunit methyltransferase N [Emticicia
oligotrophica DSM 17448]
gi|387855675|gb|AFK03772.1| Ribosomal RNA large subunit methyltransferase N [Emticicia
oligotrophica DSM 17448]
Length = 351
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 101/186 (54%), Gaps = 3/186 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYA ++E+V RI + SPKRITVST GI I K D NLA+SLHA
Sbjct: 162 MGEPLLNYAGMMESVNRITSPDGLNWSPKRITVSTAGIAKMIQKLGDDEVKFNLALSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
R +IMP + L+ L AL + K + +I EYI+ + ND Q A +L +
Sbjct: 222 ANDTKRNEIMPINESNSLQNLAAALNYFYKKTGNRITFEYIVFNDFNDSLQDAKELWEFT 281
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VN+I +NPI + T ++DK+S F K L + VR+ G+DI ACGQ
Sbjct: 282 KKVPAKVNIIEYNPIAEANYINT-TEDKLSKFAKFLEDK-GVVVNVRRSRGKDIDAACGQ 339
Query: 180 LVVNLP 185
L + P
Sbjct: 340 LAIKEP 345
>gi|212704175|ref|ZP_03312303.1| hypothetical protein DESPIG_02230 [Desulfovibrio piger ATCC 29098]
gi|212672379|gb|EEB32862.1| 23S rRNA m2A2503 methyltransferase [Desulfovibrio piger ATCC 29098]
Length = 357
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 110/184 (59%), Gaps = 10/184 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLN-LAVS 56
MGEPL N ++ A+ + GL F SP+RITVST GI + + GL LAVS
Sbjct: 168 MGEPLLNLKNVMRALESLNNDKGLNF--SPRRITVSTCGIEKGLRELGES--GLAYLAVS 223
Query: 57 LHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
LHAP Q++R +IMP A +PLE L+ ALK Y ++++I EY++L GVND + A QL
Sbjct: 224 LHAPTQELRARIMPKAARWPLEDLLQALKSYPLKTRERITFEYLLLGGVNDGLEQARQLA 283
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+++ + +NLI +NP ++ S ++V +F++ L NI +RK GQDI A
Sbjct: 284 RVVSDVKGKLNLIVYNP-SEGDPYKAPSPERVLAFEQYL-WDRNITAIIRKSKGQDIKAA 341
Query: 177 CGQL 180
CGQL
Sbjct: 342 CGQL 345
>gi|419797471|ref|ZP_14322948.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
gi|385698033|gb|EIG28425.1| 23S rRNA m2A2503 methyltransferase [Neisseria sicca VK64]
Length = 364
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|349700300|ref|ZP_08901929.1| iron-sulfur (Fe-S) cluster redox enzyme [Gluconacetobacter
europaeus LMG 18494]
Length = 414
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A+RI M G +S +RIT+ST G+V +++ ++L G+NLAVSLHA
Sbjct: 214 MGEPLYNYDNVAKAMRIIMDGEGIGLSRRRITLSTSGVVPMMDQCGAEL-GINLAVSLHA 272
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKL 118
D+R +I+P R +P+++++ A + Y S ++I EYIML GVND E A +L +L
Sbjct: 273 VRDDLRDEIVPLNRKYPIKEVIAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRL 332
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S +R S+ +++ F KI+ + + +R G+DI ACG
Sbjct: 333 ISGIPAKVNLIPFNPWPG-SSYRPSTREQLDRFAKIVMDA-GFASPIRMPRGRDILAACG 390
Query: 179 QL 180
QL
Sbjct: 391 QL 392
>gi|260773387|ref|ZP_05882303.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
gi|260612526|gb|EEX37729.1| ribosomal RNA large subunit methyltransferase N [Vibrio
metschnikovii CIP 69.14]
Length = 373
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ +M L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGQID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND +HAH+L
Sbjct: 226 PNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDGTEHAHELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y T+RK G DI A
Sbjct: 286 QLMKGTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTIRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|227547301|ref|ZP_03977350.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
longum ATCC 55813]
gi|227212260|gb|EEI80156.1| possible Fe-S-cluster redox enzyme [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 389
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 113/188 (60%), Gaps = 8/188 (4%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEP+ NY +++ AVR ++ +P F +S + ITVSTVG+V I K ++ + LAVSL
Sbjct: 201 MGEPMGNYNSVLSAVRQISAMPPEGFGISARNITVSTVGVVPGIKKLTAEGIPVRLAVSL 260
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +++P + F +++++A +Y S++++ IEY ++ G+ND+ +HA L K
Sbjct: 261 HAPSDELRDELVPMNKRFNTKQVLDAAHDYWLASKRRVSIEYALMRGINDQAEHAQLLAK 320
Query: 118 LLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L + VN IP NPI S++ S + F +IL S I T+R GQDI
Sbjct: 321 RLNHYGDNWAHVNPIPLNPI-EGSKWTASKPEDEQRFLEILHRS-GITATLRDTRGQDID 378
Query: 175 GACGQLVV 182
GACGQL
Sbjct: 379 GACGQLAA 386
>gi|384256879|ref|YP_005400813.1| ribosomal RNA large subunit methyltransferase N [Rahnella aquatilis
HX2]
gi|380752855|gb|AFE57246.1| ribosomal RNA large subunit methyltransferase N [Rahnella aquatilis
HX2]
Length = 389
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + ++ + A++ Y S Q ++ IEY+MLD +ND +HAH+L
Sbjct: 241 PNDAIRDEIVPINRKYNIDTFLAAVERYISKSNANQGRVTIEYVMLDHINDGTEHAHELA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y VRK G DI A
Sbjct: 301 ERLKNTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTVIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>gi|194290009|ref|YP_002005916.1| hypothetical protein RALTA_A1912 [Cupriavidus taiwanensis LMG
19424]
gi|193223844|emb|CAQ69853.1| Conserved hypothetical protein; radical SAM enzyme, Cfr family
domain; putative iron binding enzyme [Cupriavidus
taiwanensis LMG 19424]
Length = 384
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ DLP + LAVSLHA
Sbjct: 169 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSKDLP-VALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
+R ++P + +PL +LM A + Y + + + I EY MLDGVND +HA +L KL
Sbjct: 228 SNDALRDVLVPLNKKYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDGVEHARELLKL 287
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP S + S+++++ F ++L + + TT+RK G DI ACG
Sbjct: 288 VADVPCKFNLIPFNPFPE-SGLKRSNNEQIRRFAQVLMDA-GVVTTIRKTRGDDIDAACG 345
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 346 QLAGEVKDR 354
>gi|237807659|ref|YP_002892099.1| ribosomal RNA large subunit methyltransferase N [Tolumonas auensis
DSM 9187]
gi|259491997|sp|C4LC34.1|RLMN_TOLAT RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|237499920|gb|ACQ92513.1| radical SAM enzyme, Cfr family [Tolumonas auensis DSM 9187]
Length = 373
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N + LV A+ +M F +S +R+TVST G+V A++K D+ + LA+SLHA
Sbjct: 167 MGEPLLNLSNLVPALSLMMEDFGFGLSKRRVTVSTSGVVPALDKL-GDMIDVALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +++ + +++ Y S ++ +EY++LD VND+ +HA +L
Sbjct: 226 PNDKLRSEIMPINDKYNIQEFLGSVQRYLSKSNANHGRVTVEYVLLDHVNDDMEHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S + + S+ +V F K+L Y VRK G DI A
Sbjct: 286 ELLKDTPSKINLIPFNPFPS-NPYGKPSNSRVDRFSKVLM-EYGYTVIVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|85712740|ref|ZP_01043785.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
gi|85693472|gb|EAQ31425.1| Predicted Fe-S-cluster redox enzyme [Idiomarina baltica OS145]
Length = 378
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 114/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M F +S +R+T+ST G+V A++K + + LA+SLHA
Sbjct: 170 MGEPLLNLNNVVPAMDLMMDDYGFGLSKRRVTLSTSGVVPALDKLREQIDVM-LAISLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY--QKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
P ++R +I+P + + +E+ + + ++Y Q +Q K+ +EY+MLD VND AH+L +
Sbjct: 229 PNDELRNEIVPINKKYNIEQFLASSRKYVEQSKAQHKVTVEYVMLDHVNDSMDQAHELAR 288
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S + SS+ ++ F K+L Y VRK G DI AC
Sbjct: 289 TLKDTPSKINLIPFNPFPG-SDYGRSSNSRIDRFAKVLM-DYGFTVMVRKTRGDDIDAAC 346
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 347 GQLVGDVIDR 356
>gi|148270145|ref|YP_001244605.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
petrophila RKU-1]
gi|281412513|ref|YP_003346592.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
gi|205829917|sp|A5ILF6.1|RLMN_THEP1 RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|147735689|gb|ABQ47029.1| radical SAM enzyme, Cfr family [Thermotoga petrophila RKU-1]
gi|281373616|gb|ADA67178.1| radical SAM enzyme, Cfr family [Thermotoga naphthophila RKU-10]
Length = 343
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++++R + + +RIT+STVGI I + + + LA+SLHA
Sbjct: 157 MGEPLLNYENTIKSIRTLNHKKMGNIGIRRITISTVGIPDRIIQLAEEGLDVKLALSLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P R Q++P + + +E+++NA+K YQK + ++ IEY+++ G+NDE A +L ++L
Sbjct: 217 PTNFKRDQLVPLNKKYSIEEILNAVKIYQKKTGNRVTIEYVLIKGMNDEISDAKKLAEIL 276
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ +V VNLIP NP +V + S +++ +F++IL S I +R++ G DI ACGQ
Sbjct: 277 KNMKVFVNLIPVNP--TVEDLKKPSRERLLTFKRILLES-GIEAEIRREKGADIEAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|32477801|ref|NP_870795.1| Fe-S oxidoreductase [Rhodopirellula baltica SH 1]
gi|81658686|sp|Q7UHU7.1|RLMN_RHOBA RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|32448358|emb|CAD77872.1| conserved hypothetical protein-putative Fe-S-oxidoreductase
[Rhodopirellula baltica SH 1]
Length = 371
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 113/186 (60%), Gaps = 7/186 (3%)
Query: 1 MGEPLNNYAALVEAV---RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N ++ A+ R GL +SP+RIT+STVG+ AI+K + NLAVSL
Sbjct: 182 MGEPLANLPGVLSALDVARSEDGL--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 239
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +++P R +E ++ A Y S +++ EY++L G+ND ++HA QL +
Sbjct: 240 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQ 299
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L V++N+IP+NP+ + +RT S ++ F+ IL S + R++ G +I+ AC
Sbjct: 300 ILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAAC 357
Query: 178 GQLVVN 183
GQL N
Sbjct: 358 GQLRRN 363
>gi|421612644|ref|ZP_16053746.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SH28]
gi|408496597|gb|EKK01154.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SH28]
Length = 371
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 113/186 (60%), Gaps = 7/186 (3%)
Query: 1 MGEPLNNYAALVEAV---RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N ++ A+ R GL +SP+RIT+STVG+ AI+K + NLAVSL
Sbjct: 182 MGEPLANLPGVLSALDVARSEDGL--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 239
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +++P R +E ++ A Y S +++ EY++L G+ND ++HA QL +
Sbjct: 240 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQ 299
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L V++N+IP+NP+ + +RT S ++ F+ IL S + R++ G +I+ AC
Sbjct: 300 ILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAAC 357
Query: 178 GQLVVN 183
GQL N
Sbjct: 358 GQLRRN 363
>gi|27262416|gb|AAN87489.1| florfenicol resistance protein [Heliobacillus mobilis]
Length = 360
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP NY + A+ + T Q + +RITVST GIV I +F + +NLA+SLHA
Sbjct: 172 MGEPFLNYEQVRRAIELFTHPEGQNIGQRRITVSTSGIVPGIERFARENWEINLALSLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+R Q MP R +P+EK++NA + Y + ++++ +EY +++GVND + A QLGKL
Sbjct: 232 ADDQLRSQWMPVNRQYPIEKVLNACRRYWEQGRRRLSVEYALIEGVNDRLEDARQLGKLF 291
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ + +N+IP NP+ R V ++ R I +R++ G DI ACGQ
Sbjct: 292 TRWPIHLNVIPVNPVTESGARRPDKARMVQFLDELKR--QGIDAVIREERGVDIEAACGQ 349
Query: 180 L 180
L
Sbjct: 350 L 350
>gi|323499824|ref|ZP_08104783.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
gi|323315065|gb|EGA68117.1| ribosomal RNA large subunit methyltransferase N [Vibrio sinaloensis
DSM 21326]
Length = 374
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ +M L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALELMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R IMP + +E + +++ Y ++S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDKLRSDIMPINDRWDIEDFLASVRRYIQSSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIPFNP S ++ S+ ++ FQK L Y TVRK G DI A
Sbjct: 286 ELLKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|397170950|ref|ZP_10494360.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
gi|396087424|gb|EJI85024.1| ribosomal RNA large subunit methyltransferase N [Alishewanella
aestuarii B11]
Length = 375
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M F +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 169 MGEPLLNLNNVVPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKI-DVALAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +P+E+ + A + Y ++S+ K+ +EY+ML+G+ND AH+L K
Sbjct: 228 PNNALRDELVPVNKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAK 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S ++ SS+ ++ F K+L+ + VRK G DI AC
Sbjct: 288 ALKDTPSKINLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-DHGFTVMVRKTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 346 GQLVGDVIDR 355
>gi|319638408|ref|ZP_07993170.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
gi|317400157|gb|EFV80816.1| ribosomal RNA large subunit methyltransferase N [Neisseria mucosa
C102]
Length = 362
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRIFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|222529035|ref|YP_002572917.1| ribosomal RNA large subunit methyltransferase N
[Caldicellulosiruptor bescii DSM 6725]
gi|222455882|gb|ACM60144.1| radical SAM enzyme, Cfr family [Caldicellulosiruptor bescii DSM
6725]
Length = 341
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 111/181 (61%), Gaps = 5/181 (2%)
Query: 2 GEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHA 59
GEP +N + + + I+ + + + IT+STVGIV I + D P +NLA+SLHA
Sbjct: 157 GEPFDNIENVFKFIEIINSKEGKNIGARHITISTVGIVEGIYRL-CDFPKQVNLAISLHA 215
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P +R +++P + +P+E +M A+ Y K + +++ EY ++DGVND + A +LGK+L
Sbjct: 216 PNNSLRDKLVPINKKYPVEDIMKAVDYYIKRTNRRVTFEYALIDGVNDSIECAQELGKML 275
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ V VNLIP NP+ FR S +K+ F + L+ SY I T+R+++G IS ACGQ
Sbjct: 276 KGKLVHVNLIPVNPVEE-KGFRRPSKEKIKVFFETLK-SYQINVTIRRELGSSISAACGQ 333
Query: 180 L 180
L
Sbjct: 334 L 334
>gi|430760187|ref|YP_007216044.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009811|gb|AGA32563.1| Ribosomal RNA large subunit methyltransferase N [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 377
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 115/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A+V+A+ +M + +S +R+TVST G+V A+++ + + LAVSLHA
Sbjct: 169 MGEPLANLDAVVDAIDLMLDDNAYGLSKRRVTVSTSGLVPALDRLGA-ATDVALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P R +P+ +L+NA + Y ++ ++ EY++L G+ND+ +HA +L
Sbjct: 228 PNDALRNRLVPINRKYPIHELLNACRRYTRDGARHHRVTFEYVLLAGINDQPRHARELMA 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFNP S F S + V F+K+L + + T VR+ G DI AC
Sbjct: 288 LLRDVPCKINLIPFNPFPG-SPFVRPSSNAVRVFEKLLDDAGFV-TIVRRTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 346 GQLVGEVADR 355
>gi|421858978|ref|ZP_16291227.1| predicted Fe-S-cluster redox enzyme [Paenibacillus popilliae ATCC
14706]
gi|410831497|dbj|GAC41664.1| predicted Fe-S-cluster redox enzyme [Paenibacillus popilliae ATCC
14706]
Length = 350
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 112/186 (60%), Gaps = 13/186 (6%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP NY A + +R M GL + + ITVST GIV +I +F + +NLA+S+H
Sbjct: 161 GEPFENYDATMAFLRTMIHERGL--NIGQRHITVSTSGIVPSIYRFADENTQINLAISIH 218
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP +R ++MP R FP ++M ALK YQ + ++I EY ++ GVND+ +HA +L +
Sbjct: 219 APNDALRSKLMPVNRRFPFIEVMEALKHYQVKTGRRITFEYALIGGVNDKVEHAEELADV 278
Query: 119 LETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDIS 174
L+ ++V VNLIP N + + RT +D + F + L RG I +T+R++ G DI+
Sbjct: 279 LKRMEMVAHVNLIPVNYVPERNYIRTPRND-IFKFHRTLLDRG---INSTIRREQGHDIA 334
Query: 175 GACGQL 180
ACGQL
Sbjct: 335 AACGQL 340
>gi|418188992|ref|ZP_12825507.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47373]
gi|353856134|gb|EHE36103.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47373]
Length = 349
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 112/200 (56%), Gaps = 4/200 (2%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ V I + + IT+ST G+ H I F + +NLAVSLHA
Sbjct: 150 IGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVSLHA 209
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 210 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 269
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 270 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 328
Query: 178 GQLVVNLPDKISAKSTPPVT 197
GQL N + K+ V
Sbjct: 329 GQLRSNTMKRDRQKAVAAVN 348
>gi|319779677|ref|YP_004130590.1| ribosomal RNA large subunit methyltransferase N [Taylorella
equigenitalis MCE9]
gi|397661904|ref|YP_006502604.1| ribosomal RNA large subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
gi|317109701|gb|ADU92447.1| Ribosomal RNA large subunit methyltransferase N [Taylorella
equigenitalis MCE9]
gi|394350083|gb|AFN35997.1| ribosomal RNA large subunit methyltransferase [Taylorella
equigenitalis ATCC 35865]
Length = 378
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ AV+++ + +S +R+TVST G++ ++K D P + LAVSLHA
Sbjct: 173 MGEPLLNYDQVLPAVKMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P + +PL++L++A Y + + + I EYIML+ VND + HA+QL ++
Sbjct: 232 PNDALRNQLIPLNKKYPLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHANQLIEI 291
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S + SS +V +F IL + I T RK G DI ACG
Sbjct: 292 CREVKSKVNLIPFNPFPE-SGLKRSSSQRVKAFSAILNDA-GIVATTRKTRGDDIDAACG 349
Query: 179 QLVVNLPDK 187
QL ++ DK
Sbjct: 350 QLAGDIKDK 358
>gi|417301677|ref|ZP_12088822.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica WH47]
gi|327542013|gb|EGF28512.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica WH47]
Length = 365
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 113/186 (60%), Gaps = 7/186 (3%)
Query: 1 MGEPLNNYAALVEAV---RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N ++ A+ R GL +SP+RIT+STVG+ AI+K + NLAVSL
Sbjct: 176 MGEPLANLPGVLSALDVARSEDGL--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 233
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +++P R +E ++ A Y S +++ EY++L G+ND ++HA QL +
Sbjct: 234 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQ 293
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L V++N+IP+NP+ + +RT S ++ F+ IL S + R++ G +I+ AC
Sbjct: 294 ILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAAC 351
Query: 178 GQLVVN 183
GQL N
Sbjct: 352 GQLRRN 357
>gi|145631818|ref|ZP_01787577.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
gi|144982537|gb|EDJ90091.1| hypothetical protein CGSHi22421_06593 [Haemophilus influenzae
R3021]
Length = 383
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + + LA+SLHA
Sbjct: 176 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDVALAISLHA 234
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P R + ++ L++++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 235 PNDELRDEIVPINRKYNIQMLIDSVNRYLTVSNANHGKVTIEYVMLDHVNDGVEHAHQLA 294
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y+ +RK G DI A
Sbjct: 295 EVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYDFTVIIRKTRGDDIDAA 352
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 353 CGQLAGDVIDR 363
>gi|393764186|ref|ZP_10352798.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
gi|392604816|gb|EIW87715.1| ribosomal RNA large subunit methyltransferase N [Alishewanella agri
BL06]
Length = 375
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ +M F +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 169 MGEPLLNLNNVVPAMELMMEDFGFGLSKRRVTLSTSGVVPALDLLREKI-DVALAISLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P + +P+E+ + A + Y ++S+ K+ +EY+ML+G+ND AH+L K
Sbjct: 228 PNNALRDELVPVNKKYPMEEFLAASRRYIEHSKANDKVTVEYVMLEGINDSTDQAHELAK 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L+ +NLIPFNP S ++ SS+ ++ F K+L+ + VRK G DI AC
Sbjct: 288 ALKDTPSKINLIPFNPYPG-SPYKRSSNSRIDRFNKVLQ-EHGFTVMVRKTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV ++ D+
Sbjct: 346 GQLVGDVIDR 355
>gi|388257762|ref|ZP_10134941.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
gi|387938929|gb|EIK45481.1| radical SAM enzyme, Cfr family [Cellvibrio sp. BR]
Length = 392
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 7/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+++ +M + +S +R+T+ST G+V +++ S LA+SLHA
Sbjct: 183 MGEPLLNFDNVVDSMNLMMHDNAYGISKRRVTLSTSGVVPQLDRL-SQYTDACLAISLHA 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +++P R +P+ L+++ K Y + ++ +KI IEY ++D VND HAH+L
Sbjct: 242 PNDELRNELVPINRKYPIAMLLDSAKRYIEAMPDTHRKITIEYTLIDQVNDRPHHAHELA 301
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL V +NLIPFNP ++S ++ S++ + FQ IL + I TTVR G DI A
Sbjct: 302 ELLRDVPVKINLIPFNPF-NLSNYKRVSNNALRKFQDILMEAGYI-TTVRTTRGDDIDAA 359
Query: 177 CGQLVVNLPD 186
CGQL + D
Sbjct: 360 CGQLAGQVND 369
>gi|383189011|ref|YP_005199139.1| 2-vinyl bacteriochlorophyllide hydratase [Rahnella aquatilis CIP
78.65 = ATCC 33071]
gi|371587269|gb|AEX50999.1| 23S rRNA m2A2503 methyltransferase [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 399
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P R + ++ + A++ Y S Q ++ IEY+MLD +ND +HAH+L
Sbjct: 251 PNDAIRDEIVPINRKYNIDTFLAAVERYIGKSNANQGRVTIEYVMLDHINDGTEHAHELA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ ++ F K+L Y VRK G DI A
Sbjct: 311 ERLKNTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTVIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 369 CGQLAGDVIDR 379
>gi|340027865|ref|ZP_08663928.1| radical SAM protein [Paracoccus sp. TRP]
Length = 396
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ + +A+++ M G +S +RIT+ST GIV I + ++ G LAVS HA
Sbjct: 196 MGEPLYNFENVRDAMKVVMDGEGISLSRRRITLSTSGIVPEIARTAEEI-GCLLAVSFHA 254
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK-NSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
DVR +++P R + +E L+NAL+EY + ++ ++I EY+MLDGVND + A +L KL
Sbjct: 255 TTDDVRNRLVPVNRKWNIEVLLNALREYPRLSNSERITFEYVMLDGVNDSDDDARRLVKL 314
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFN S +R SS D++ +F I+ + + +R G+DI ACG
Sbjct: 315 IRGIPAKVNLIPFNEWPG-SPYRRSSWDRIEAFADIVHKA-GYASPIRTPRGEDIMAACG 372
Query: 179 QL 180
QL
Sbjct: 373 QL 374
>gi|251791823|ref|YP_003006543.1| Cfr family radical SAM protein [Aggregatibacter aphrophilus NJ8700]
gi|247533210|gb|ACS96456.1| radical SAM enzyme, Cfr family [Aggregatibacter aphrophilus NJ8700]
Length = 311
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + + LA+SLHA
Sbjct: 105 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDVALAISLHA 163
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ L++++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 164 PNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLA 223
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK G DI A
Sbjct: 224 EVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKTRGDDIDAA 281
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 282 CGQLAGDVIDR 292
>gi|307729247|ref|YP_003906471.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
gi|307583782|gb|ADN57180.1| radical SAM enzyme, Cfr family [Burkholderia sp. CCGE1003]
Length = 383
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 111/189 (58%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 179 MGEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E A +L L
Sbjct: 238 PSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAL 297
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R S +++ F ++L + + TTVRK G DI ACG
Sbjct: 298 TRDVPCKFNLIPFNPFPESGLVR-SRPEQIKRFAQVLVDA-GVVTTVRKTRGDDIDAACG 355
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 356 QLAGAVKDR 364
>gi|452974521|gb|EME74341.1| ribosomal RNA large subunit methyltransferase N [Bacillus
sonorensis L12]
Length = 362
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 113/183 (61%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ ++ ++I+ GL + + ITVST GI+ I +F + +N A+SL
Sbjct: 174 IGEPFDNFQEMLAFLKIVNHDKGL--NIGARHITVSTSGIIPKIYEFADEKLQINFAISL 231
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R ++MP RA+ L +LM A++ Y K + +++ EY + GVND+ +HA +L +
Sbjct: 232 HAPNTEIRSRLMPINRAYKLPELMKAVEYYIKKTGRRVTFEYGLFGGVNDQVEHAEELAE 291
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL+ + VNLIP N + RT D++ +F+K L+ S+ + T+R++ G DI AC
Sbjct: 292 LLKGIKCHVNLIPVNYVPERDYVRTPK-DQIFAFEKTLK-SHGVNVTIRREQGHDIDAAC 349
Query: 178 GQL 180
GQL
Sbjct: 350 GQL 352
>gi|350571836|ref|ZP_08940152.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
gi|349791021|gb|EGZ44914.1| cfr family radical SAM enzyme [Neisseria wadsworthii 9715]
Length = 362
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPLANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLKEAMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
VR +I+P + +PL++LM A + Y K + + EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDAVRDEIVPLNKKYPLKELMAACQRYLVKAPRDFVTFEYVMLDGINDKPQHAKELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + SS+D + F++IL+ + + TVRK G DI ACG
Sbjct: 282 VKDVPCKFNLIPFNPFPN-SGYDRSSNDAIRVFKEILQEAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|192359958|ref|YP_001981965.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
gi|190686123|gb|ACE83801.1| radical SAM enzyme, Cfr family [Cellvibrio japonicus Ueda107]
Length = 402
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 7/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V+A+ +M + +S +R+T+ST G+V +++ S LA+SLHA
Sbjct: 194 MGEPLLNFDNVVDAMNLMMHDNAYGISKRRVTLSTSGVVPQLDRL-SQYTDACLAISLHA 252
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQK---NSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +++P R +P+ L+++ + Y + ++ +KI IEY ++D VND QHA QL
Sbjct: 253 PNDELRNELVPINRKYPIAMLLDSARRYIQSMPDTHRKITIEYTLIDQVNDRPQHAQQLA 312
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL V +NLIPFNP ++S ++ S++ + FQ IL I TTVR G DI A
Sbjct: 313 ELLRDVPVKINLIPFNPF-NLSNYKRVSNNALRKFQDILMQEGYI-TTVRTTRGDDIDAA 370
Query: 177 CGQLVVNLPD 186
CGQL ++ D
Sbjct: 371 CGQLAGSVND 380
>gi|440713152|ref|ZP_20893756.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SWK14]
gi|436442084|gb|ELP35262.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
baltica SWK14]
Length = 371
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 113/186 (60%), Gaps = 7/186 (3%)
Query: 1 MGEPLNNYAALVEAV---RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N ++ A+ R GL +SP+RIT+STVG+ AI+K + NLAVSL
Sbjct: 182 MGEPLANLPGVLAALDVARSEDGL--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 239
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +++P R +E ++ A Y S +++ EY++L G+ND ++HA QL +
Sbjct: 240 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQ 299
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L V++N+IP+NP+ + +RT S ++ F+ IL S + R++ G +I+ AC
Sbjct: 300 ILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAAC 357
Query: 178 GQLVVN 183
GQL N
Sbjct: 358 GQLRRN 363
>gi|291522861|emb|CBK81154.1| 23S rRNA m(2)A-2503 methyltransferase [Coprococcus catus GD/7]
Length = 352
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEPL+NY ALV + I+T P +S + +TVST G+V I + + LA+SLHA
Sbjct: 162 GEPLDNYDALVRMIDILTHAPGLDISQRNVTVSTCGLVPKIYELADLKLQITLAISLHAV 221
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
+ R ++MP A + +E+++ A + Y + ++I EY ++ GVND + A L LLE
Sbjct: 222 NDEKRRELMPIANTYSIEEILKACRYYYSQTNRRITFEYSLVKGVNDSREDAKALAALLE 281
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
+NLIP NPI S +R + D V F+ +L Y T+R++MG+DI ACGQL
Sbjct: 282 GINCHINLIPVNPIEERS-YRQTEADAVLKFKNMLE-KYGRNVTIRREMGRDIQAACGQL 339
>gi|449133516|ref|ZP_21769067.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
europaea 6C]
gi|448887798|gb|EMB18155.1| ribosomal RNA large subunit methyltransferase N [Rhodopirellula
europaea 6C]
Length = 365
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 113/186 (60%), Gaps = 7/186 (3%)
Query: 1 MGEPLNNYAALVEAV---RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N ++ A+ R GL +SP+RIT+STVG+ AI+K + NLAVSL
Sbjct: 176 MGEPLANLPGVLAALDVARSEDGL--GISPRRITISTVGLPPAIDKLAAAGIPYNLAVSL 233
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +++P R +E ++ A Y S +++ EY++L G+ND ++HA QL +
Sbjct: 234 HAPNDELRSELVPVNRKIGIEPVLQAADRYFHASGRRLTFEYVLLGGINDGDEHARQLSQ 293
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+L V++N+IP+NP+ + +RT S ++ F+ IL S + R++ G +I+ AC
Sbjct: 294 ILRGRSVMMNVIPYNPVAGLP-YRTPSGAAIARFRAILE-SAGVNVNFRQRKGDEINAAC 351
Query: 178 GQLVVN 183
GQL N
Sbjct: 352 GQLRRN 357
>gi|406945406|gb|EKD76900.1| Ribosomal RNA large subunit methyltransferase N [uncultured
bacterium]
Length = 374
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 113/189 (59%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY +++A+ +M L + +S R+T+ST G+V + +F D +LAVSLHA
Sbjct: 163 MGEPLLNYQPVIDAMELMMHDLAYGLSKYRVTLSTSGVVPQLLQFKKDSIA-SLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P + +PLE LM ++Y +S++ I EY+ML G+ND A QL +L
Sbjct: 222 PTNELREQLVPINKKYPLEVLMPVCRDYFPTDSKRCIVFEYVMLKGINDSLLQAKQLIRL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ +NLIPFNP + + S + +FQ L + ++T VRK G DI GACG
Sbjct: 282 LDNMPCKINLIPFNPFPK-TDYVCSDMQTILAFQDRLTKA-GVKTWVRKTRGDDIDGACG 339
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 340 QLAGDFKDR 348
>gi|385328576|ref|YP_005882879.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
gi|308389428|gb|ADO31748.1| hypothetical protein NMBB_1442 [Neisseria meningitidis alpha710]
Length = 364
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|70726698|ref|YP_253612.1| ribosomal RNA large subunit methyltransferase N [Staphylococcus
haemolyticus JCSC1435]
gi|123776132|sp|Q4L5R9.1|RLMN_STAHJ RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|68447422|dbj|BAE05006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + + ITVST GI+ I F + +N AVSLHA
Sbjct: 176 IGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHA 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R ++MP RA+ ++KLM A+K YQ+ + +++ EY + GVND+ +HA L L+
Sbjct: 236 AKDEIRSKLMPINRAYHVDKLMEAIKYYQEKTNRRVTFEYGLFGGVNDQLEHARDLAHLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +T DD + F+K L+ I T+R++ G DI ACGQ
Sbjct: 296 KDLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRREQGSDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|86742258|ref|YP_482658.1| ribosomal RNA large subunit methyltransferase N [Frankia sp. CcI3]
gi|123764529|sp|Q2J713.1|RLMN_FRASC RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|86569120|gb|ABD12929.1| 23S rRNA m(2)A-2503 methyltransferase [Frankia sp. CcI3]
Length = 421
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 110/186 (59%), Gaps = 5/186 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP---FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL NYAA++ A+R +T P +S + +TVSTVG+V AI + + + LAVSL
Sbjct: 201 MGEPLANYAAVIAALRRLTAHPPEGLGLSARGLTVSTVGLVPAIRRLAGEGLPVTLAVSL 260
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +R +++P +P+ +++ A EY + + +++ +EY ++DGVND+ A L
Sbjct: 261 HAPDDVLRNELVPINTRWPVVEVLAAAWEYAEVTGRRVSVEYALIDGVNDDVGRADALAD 320
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL VNLIP NP G S +R S+ +F + LR I TTVR G++I+ AC
Sbjct: 321 LLVGRLAHVNLIPLNPTGG-SSWRASAPAGQRAFVRRLR-DRGIVTTVRDTRGREIAAAC 378
Query: 178 GQLVVN 183
GQL
Sbjct: 379 GQLAAE 384
>gi|399115746|emb|CCG18549.1| ribosomal RNA large subunit methyltransferase [Taylorella
equigenitalis 14/56]
Length = 378
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ AV+++ + +S +R+TVST G++ ++K D P + LAVSLHA
Sbjct: 173 MGEPLLNYDQVLPAVKMLVDQNAYGLSRRRVTVSTSGVIPFMDKLSQDCP-VALAVSLHA 231
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P + +PL++L++A Y + + + I EYIML+ VND + HA+QL ++
Sbjct: 232 PNDALRDQLIPLNKKYPLKELIDACNRYIEFAPRDFITFEYIMLEDVNDTDIHANQLIEI 291
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S + SS +V +F IL + I T RK G DI ACG
Sbjct: 292 CREVKSKVNLIPFNPFPE-SGLKRSSSQRVKAFSAILNDA-GIVATTRKTRGDDIDAACG 349
Query: 179 QLVVNLPDK 187
QL ++ DK
Sbjct: 350 QLAGDIKDK 358
>gi|421563510|ref|ZP_16009329.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
gi|421907044|ref|ZP_16336932.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|393292008|emb|CCI72901.1| Ribosomal RNA large subunit methyltransferase N 2 [Neisseria
meningitidis alpha704]
gi|402341206|gb|EJU76393.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2795]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|390444460|ref|ZP_10232237.1| ribosomal RNA large subunit methyltransferase N [Nitritalea
halalkaliphila LW7]
gi|389664467|gb|EIM75959.1| ribosomal RNA large subunit methyltransferase N [Nitritalea
halalkaliphila LW7]
Length = 367
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NYA ++ A+ +I + ++P+RIT+STVGI I + + NLAVSLH+
Sbjct: 176 MGEPLLNYANVLAAIEKITSPEGLGMAPRRITLSTVGIPKMIRRMADEEVKFNLAVSLHS 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+ + R ++MP PLE+L AL + + +Q+++ EY++ G+ND+E+HA L K
Sbjct: 236 AINETRSRLMPINDKSPLEELAEALVYWYQKTQRRVTYEYVIWQGINDDERHARALVKFC 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
VN+I +NPI FR ++ + V + +IL + I VR+ GQDI ACGQ
Sbjct: 296 RHIPSKVNIIQYNPIDE-GDFRQAAQEAVDMYVRILEEN-GIVAKVRRSRGQDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|385855368|ref|YP_005901881.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
gi|325204309|gb|ADY99762.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240355]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|170694776|ref|ZP_02885927.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
gi|170140407|gb|EDT08584.1| radical SAM enzyme, Cfr family [Burkholderia graminis C4D1M]
Length = 383
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 111/189 (58%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
M EPL NY A+V A+R+M + +S +R+T+ST G+V +++ +DLP + LAVSLHA
Sbjct: 179 MAEPLLNYDAVVPAMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLGADLP-VALAVSLHA 237
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R ++P + +PL +LM A + Y K + + I EY MLDGVND E A +L L
Sbjct: 238 PSDPLRDMLVPLNKKYPLRELMAACQRYLKVAPRDFITFEYCMLDGVNDSEAQARELLAL 297
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
NLIPFNP R+ S +++ F ++L + + TTVRK G DI ACG
Sbjct: 298 TRDVPCKFNLIPFNPFPESGLVRSKS-EQIKRFAQVLMDA-GVVTTVRKTRGDDIDAACG 355
Query: 179 QLVVNLPDK 187
QL + D+
Sbjct: 356 QLAGAVKDR 364
>gi|406936421|gb|EKD70145.1| hypothetical protein ACD_46C00621G0003, partial [uncultured
bacterium]
Length = 342
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++ A+ +M + +S +R+TVST G+V + + ++ + LAVSLHA
Sbjct: 137 MGEPLLNFDNVLPALNLMLDDFAYGLSKRRVTVSTAGVVPIMYQLR-EMSEVALAVSLHA 195
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R +I+P + +PL++LM +EY K+ ++ I +EY+ML VND HA QL KL
Sbjct: 196 PNDELRNKIVPLNKKYPLKELMAVCREYFKDDNRRSITMEYVMLANVNDSPIHAKQLIKL 255
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ + VNLIPFNP + ++ S + + F+ IL + + TT+R+ G DI ACG
Sbjct: 256 LDGVRAKVNLIPFNPFPH-TDYQRSDTETIMRFRDILMQA-GLNTTIRRTRGDDIDAACG 313
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 314 QLVGQVKDR 322
>gi|418145988|ref|ZP_12782772.1| radical SAM superfamily protein [Streptococcus pneumoniae GA13637]
gi|353815556|gb|EHD95772.1| radical SAM superfamily protein [Streptococcus pneumoniae GA13637]
Length = 361
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKLNRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKKGG-NCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRFNTMKRDRQKAVAAV 359
>gi|337752109|ref|YP_004646271.1| protein RlmN2 [Paenibacillus mucilaginosus KNP414]
gi|336303298|gb|AEI46401.1| RlmN2 [Paenibacillus mucilaginosus KNP414]
Length = 361
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L++ + ++ GL + + ITVST G+ I +F +NLA+SL
Sbjct: 163 IGEPFDNFTNLIDFLGVVIDHKGLA--IGARHITVSTSGLTQKIKEFADLNLRVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM A+ Y + Q++ IEYI+L VND +HA +L +
Sbjct: 221 HAPNNELRSRIMKINKALPIEKLMEAMDYYWAKTNQRVTIEYILLKDVNDRTEHALELAE 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + V VNLIP+NP+ SQ++ + + V +F L+ + +VR + G DI
Sbjct: 281 LLADRKQSVNVNLIPYNPVDEHSQYQRTEKESVRAFYDTLKKQ-GLSCSVRLEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|416161426|ref|ZP_11606391.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|421557411|ref|ZP_16003316.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|421561379|ref|ZP_16007227.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|433469505|ref|ZP_20426926.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|433473705|ref|ZP_20431066.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|433482269|ref|ZP_20439529.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|433484252|ref|ZP_20441478.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|433486519|ref|ZP_20443714.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
gi|254670500|emb|CBA06240.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325128395|gb|EGC51278.1| radical SAM enzyme, Cfr family [Neisseria meningitidis N1568]
gi|402335049|gb|EJU70324.1| 23S rRNA methyltransferase [Neisseria meningitidis 80179]
gi|402338842|gb|EJU74072.1| 23S rRNA methyltransferase [Neisseria meningitidis NM2657]
gi|432203775|gb|ELK59825.1| 23S rRNA methyltransferase [Neisseria meningitidis 98080]
gi|432210003|gb|ELK65969.1| 23S rRNA methyltransferase [Neisseria meningitidis 97021]
gi|432216062|gb|ELK71945.1| 23S rRNA methyltransferase [Neisseria meningitidis 2006087]
gi|432220938|gb|ELK76755.1| 23S rRNA methyltransferase [Neisseria meningitidis 2002038]
gi|432221804|gb|ELK77608.1| 23S rRNA methyltransferase [Neisseria meningitidis 97014]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|222099877|ref|YP_002534445.1| ribosomal RNA large subunit methyltransferase N [Thermotoga
neapolitana DSM 4359]
gi|254807220|sp|B9K7Z6.1|RLMN_THENN RecName: Full=Probable dual-specificity RNA methyltransferase RlmN;
AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase; AltName:
Full=23S rRNA m2A2503 methyltransferase; AltName:
Full=Ribosomal RNA large subunit methyltransferase N;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase;
AltName: Full=tRNA m2A37 methyltransferase
gi|221572267|gb|ACM23079.1| Radical SAM enzyme, Cfr family [Thermotoga neapolitana DSM 4359]
Length = 343
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 117/191 (61%), Gaps = 6/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++++RI+ + +RIT+STVGI I + + + LA+SLHA
Sbjct: 157 MGEPLLNYENTIKSIRILNHKKMGNIGIRRITISTVGIPEKIIQLADEGLDVKLALSLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P R Q++P R + +E+++NA+K YQ + +++ IEY+++ GVNDE A +L ++L
Sbjct: 217 PTNFKRDQLVPLNRKYSVEEILNAIKVYQMKTGKRVTIEYVLIRGVNDEISDAKKLAEIL 276
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ +V VNLIP NP +V+ S ++ +F++IL + I +R++ G DI ACGQ
Sbjct: 277 KGLKVFVNLIPVNP--TVAGLSKPSRQRILAFKRILLEN-GIEAEIRQEKGSDIEAACGQ 333
Query: 180 LVVNLPDKISA 190
L L K+S+
Sbjct: 334 L--RLKRKVSS 342
>gi|389821936|ref|ZP_10210083.1| ribosomal RNA large subunit methyltransferase N [Planococcus
antarcticus DSM 14505]
gi|388462488|gb|EIM04927.1| ribosomal RNA large subunit methyltransferase N [Planococcus
antarcticus DSM 14505]
Length = 357
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NYA L+ + I+ + + ITVST GIV I + + +NLA+S+HA
Sbjct: 162 IGEPFDNYANLMGFLNIVNSQKGLAIGARHITVSTSGIVPKIYDYADEGLQVNLAISIHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R +IM +A+P+EKLM ++ Y + S ++I EYIML +ND + A+QL KLL
Sbjct: 222 PTNELRTRIMKINKAYPVEKLMASIDYYLEKSNRRITFEYIMLRDINDHVEEANQLAKLL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
E + + VNLIP+N + Q++ S+ + +++F L+ I VR + G DI AC
Sbjct: 282 EDKRHLSYVNLIPYNSVDEHDQYQQSTPEAIAAFYDALKKK-GINCGVRHEQGADIDAAC 340
Query: 178 GQL 180
GQL
Sbjct: 341 GQL 343
>gi|350552153|ref|ZP_08921359.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
gi|349795018|gb|EGZ48824.1| Ribosomal RNA large subunit methyltransferase N [Thiorhodospira
sibirica ATCC 700588]
Length = 390
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT-GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ A V A+ +M + +S +R+TVST G+V AI++ L ++LA+SLHA
Sbjct: 180 MGEPLLNFEASVAAMELMLHDHAYGLSKRRVTVSTAGVVPAIDRLRDTL-DVSLAISLHA 238
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ--QKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R Q++P R +P+ +L+ A K Y + + Q+I +EY +++GVND Q A L +
Sbjct: 239 PDDALRDQLVPLNRKYPIRELLAACKRYVREGRHHQRITVEYALINGVNDAPQQAQALAR 298
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL-RGSYNIRTTVRKQMGQDISGA 176
LL +NLIPFNP S + ++ V+ FQ +L + Y T +R+ G +I A
Sbjct: 299 LLRDLPCKLNLIPFNPFAQ-SPYAAPTEAAVARFQDVLTQAGYT--TVIRRTRGDEIDAA 355
Query: 177 CGQLV 181
CGQLV
Sbjct: 356 CGQLV 360
>gi|259907715|ref|YP_002648071.1| ribosomal RNA large subunit methyltransferase N [Erwinia pyrifoliae
Ep1/96]
gi|385785505|ref|YP_005816614.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
Ejp617]
gi|387870486|ref|YP_005801856.1| hypothetical protein EPYR_01105 [Erwinia pyrifoliae DSM 12163]
gi|224963337|emb|CAX54822.1| conserved uncharacterized protein YfgB [Erwinia pyrifoliae Ep1/96]
gi|283477569|emb|CAY73485.1| UPF0063 protein yfgB [Erwinia pyrifoliae DSM 12163]
gi|310764777|gb|ADP09727.1| ribosomal RNA large subunit methyltransferase N [Erwinia sp.
Ejp617]
Length = 389
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 183 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 241
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + ++ Y S Q ++ IEY+MLD +ND +AH+L
Sbjct: 242 PNDSIRNEIVPINKKYNIETFLASVSRYIGKSNANQGRVTIEYVMLDHINDSTDNAHELA 301
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 302 ALLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-EYGFTTIVRKTRGDDIDAA 359
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 360 CGQLAGDVIDR 370
>gi|148992431|ref|ZP_01822126.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
SP9-BS68]
gi|168488437|ref|ZP_02712636.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
gi|417678729|ref|ZP_12328126.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17570]
gi|418125371|ref|ZP_12762287.1| radical SAM superfamily protein [Streptococcus pneumoniae GA44511]
gi|418191315|ref|ZP_12827819.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47388]
gi|418213937|ref|ZP_12840672.1| radical SAM superfamily protein [Streptococcus pneumoniae GA54644]
gi|418233957|ref|ZP_12860537.1| radical SAM superfamily protein [Streptococcus pneumoniae GA08780]
gi|419484369|ref|ZP_14024145.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA43257]
gi|419507831|ref|ZP_14047485.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA49542]
gi|421219950|ref|ZP_15676805.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070425]
gi|421222281|ref|ZP_15679075.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070531]
gi|421278531|ref|ZP_15729341.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA17301]
gi|421293779|ref|ZP_15744503.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA56113]
gi|421300620|ref|ZP_15751291.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA19998]
gi|147928748|gb|EDK79761.1| hypothetical protein CGSSp9BS68_08432 [Streptococcus pneumoniae
SP9-BS68]
gi|183572944|gb|EDT93472.1| radical SAM enzyme, Cfr family [Streptococcus pneumoniae SP195]
gi|332073108|gb|EGI83587.1| radical SAM superfamily protein [Streptococcus pneumoniae GA17570]
gi|353799415|gb|EHD79734.1| radical SAM superfamily protein [Streptococcus pneumoniae GA44511]
gi|353857216|gb|EHE37179.1| radical SAM superfamily protein [Streptococcus pneumoniae GA47388]
gi|353871220|gb|EHE51091.1| radical SAM superfamily protein [Streptococcus pneumoniae GA54644]
gi|353889396|gb|EHE69167.1| radical SAM superfamily protein [Streptococcus pneumoniae GA08780]
gi|379583880|gb|EHZ48757.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA43257]
gi|379612676|gb|EHZ77393.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA49542]
gi|395589605|gb|EJG49923.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070531]
gi|395590025|gb|EJG50340.1| radical SAM superfamily protein [Streptococcus pneumoniae 2070425]
gi|395881903|gb|EJG92951.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA17301]
gi|395895111|gb|EJH06087.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA56113]
gi|395900044|gb|EJH10983.1| 23S rRNA methyltransferase [Streptococcus pneumoniae GA19998]
Length = 361
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAVR-IMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ R I + + ITVST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFFRTINDDKGMAIGARHITVSTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDSVEQALELTELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + NLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYANLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|218768330|ref|YP_002342842.1| hypothetical protein NMA1522 [Neisseria meningitidis Z2491]
gi|385324024|ref|YP_005878463.1| hypothetical protein NMV_1088 [Neisseria meningitidis 8013]
gi|385338161|ref|YP_005892034.1| hypothetical protein NMAA_1039 [Neisseria meningitidis WUE 2594]
gi|416182800|ref|ZP_11612236.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|421550805|ref|ZP_15996806.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|433471445|ref|ZP_20428831.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|433475156|ref|ZP_20432497.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|433477755|ref|ZP_20435075.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|433479825|ref|ZP_20437115.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|433513632|ref|ZP_20470422.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|433515920|ref|ZP_20472688.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|433517705|ref|ZP_20474451.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|433520087|ref|ZP_20476807.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|433522022|ref|ZP_20478713.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|433524326|ref|ZP_20480987.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|433526413|ref|ZP_20483043.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|433528380|ref|ZP_20484989.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|433530581|ref|ZP_20487170.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|433532850|ref|ZP_20489413.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|433534647|ref|ZP_20491187.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|433539090|ref|ZP_20495566.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|433541165|ref|ZP_20497617.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
gi|205829822|sp|A1ISB3.1|RLMN_NEIMA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|121052338|emb|CAM08669.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|261392411|emb|CAX49953.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|319410575|emb|CBY90944.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
gi|325134450|gb|EGC57095.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M13399]
gi|402329342|gb|EJU64703.1| 23S rRNA methyltransferase [Neisseria meningitidis 69166]
gi|432208297|gb|ELK64275.1| 23S rRNA methyltransferase [Neisseria meningitidis 68094]
gi|432210974|gb|ELK66929.1| 23S rRNA methyltransferase [Neisseria meningitidis 88050]
gi|432215420|gb|ELK71309.1| 23S rRNA methyltransferase [Neisseria meningitidis 70012]
gi|432216164|gb|ELK72046.1| 23S rRNA methyltransferase [Neisseria meningitidis 63041]
gi|432247164|gb|ELL02603.1| 23S rRNA methyltransferase [Neisseria meningitidis 63049]
gi|432252846|gb|ELL08196.1| 23S rRNA methyltransferase [Neisseria meningitidis 2004090]
gi|432253441|gb|ELL08785.1| 23S rRNA methyltransferase [Neisseria meningitidis 96023]
gi|432254809|gb|ELL10143.1| 23S rRNA methyltransferase [Neisseria meningitidis 65014]
gi|432259570|gb|ELL14841.1| 23S rRNA methyltransferase [Neisseria meningitidis 97020]
gi|432259839|gb|ELL15109.1| 23S rRNA methyltransferase [Neisseria meningitidis 61103]
gi|432261177|gb|ELL16434.1| 23S rRNA methyltransferase [Neisseria meningitidis 69096]
gi|432265181|gb|ELL20377.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3652]
gi|432266673|gb|ELL21855.1| 23S rRNA methyltransferase [Neisseria meningitidis 2007056]
gi|432267088|gb|ELL22269.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3642]
gi|432271389|gb|ELL26514.1| 23S rRNA methyltransferase [Neisseria meningitidis 2001212]
gi|432273452|gb|ELL28550.1| 23S rRNA methyltransferase [Neisseria meningitidis 70030]
gi|432277178|gb|ELL32227.1| 23S rRNA methyltransferase [Neisseria meningitidis 63006]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|294955468|ref|XP_002788520.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239904061|gb|EER20316.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 242
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 25/196 (12%)
Query: 23 FQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 82
F + + ITVSTVG++ I D G+ LA+SLHAP Q +R +I+P+A+A+ +++LM
Sbjct: 5 FGIPQRCITVSTVGVIPRIRSLAHDASGVKLALSLHAPTQALREKIVPSAKAWSIDELMA 64
Query: 83 ALKEYQKNSQ---------------QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVN 127
A+ EY + S+ + IEY+++ VND E+ AHQLG L++ + VVN
Sbjct: 65 AVDEYSEASRVAGRPDGSGGGGRKKGSVMIEYVVIRDVNDTEECAHQLGVLMKNRKAVVN 124
Query: 128 LIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDK 187
IP+N + + S F + V+ IL+ Y +R R+ G+DI ACGQL
Sbjct: 125 FIPYNAVDNGSNFEPPLESSVTRMVSILKDVYGVRVYYRRHHGRDIDAACGQL------- 177
Query: 188 ISAKSTPP-VTDIEDL 202
AK P V D+EDL
Sbjct: 178 --AKKRPRMVPDLEDL 191
>gi|223043733|ref|ZP_03613776.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
gi|417907096|ref|ZP_12550872.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus capitis VCU116]
gi|222442830|gb|EEE48932.1| radical SAM enzyme, Cfr family [Staphylococcus capitis SK14]
gi|341596727|gb|EGS39318.1| 23S rRNA m2A2503 methyltransferase [Staphylococcus capitis VCU116]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 105/181 (58%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + + ITVST GI+ I F + +N AVSLH
Sbjct: 176 IGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHG 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R ++MP RA+ +EKLM A+K YQ+ + +++ EY + GVND+ +HA L L+
Sbjct: 236 AKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNRRVTFEYGLFGGVNDQLEHARDLAHLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +T DD + F+K L+ I T+R++ G DI ACGQ
Sbjct: 296 KNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRREQGSDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|15677174|ref|NP_274327.1| hypothetical protein NMB1308 [Neisseria meningitidis MC58]
gi|385341775|ref|YP_005895646.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|385853062|ref|YP_005899576.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|385857379|ref|YP_005903891.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|416170615|ref|ZP_11608367.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|416187679|ref|ZP_11614291.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|416196373|ref|ZP_11618143.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|418288492|ref|ZP_12900973.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|418290737|ref|ZP_12902857.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|421540565|ref|ZP_15986710.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|421559264|ref|ZP_16005139.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|421567660|ref|ZP_16013394.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|427827981|ref|ZP_18995000.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|433465256|ref|ZP_20422738.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|433488593|ref|ZP_20445755.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|433490636|ref|ZP_20447762.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|433504965|ref|ZP_20461904.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|433507319|ref|ZP_20464227.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|433509250|ref|ZP_20466119.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|433511525|ref|ZP_20468352.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
gi|81784539|sp|Q9JZ42.1|RLMN_NEIMB RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|7226549|gb|AAF41683.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984107|gb|EFV63085.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325130328|gb|EGC53094.1| radical SAM enzyme, Cfr family [Neisseria meningitidis OX99.30304]
gi|325136188|gb|EGC58796.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M0579]
gi|325140467|gb|EGC62988.1| radical SAM enzyme, Cfr family [Neisseria meningitidis CU385]
gi|325200066|gb|ADY95521.1| radical SAM enzyme, Cfr family [Neisseria meningitidis H44/76]
gi|325201981|gb|ADY97435.1| radical SAM enzyme, Cfr family [Neisseria meningitidis M01-240149]
gi|325208268|gb|ADZ03720.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NZ-05/33]
gi|372201111|gb|EHP15078.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM220]
gi|372201790|gb|EHP15672.1| radical SAM enzyme, Cfr family [Neisseria meningitidis NM233]
gi|402318719|gb|EJU54235.1| 23S rRNA methyltransferase [Neisseria meningitidis 93004]
gi|402336659|gb|EJU71919.1| 23S rRNA methyltransferase [Neisseria meningitidis 92045]
gi|402343693|gb|EJU78839.1| 23S rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|432203200|gb|ELK59254.1| 23S rRNA methyltransferase [Neisseria meningitidis NM422]
gi|432223426|gb|ELK79207.1| 23S rRNA methyltransferase [Neisseria meningitidis M13255]
gi|432227627|gb|ELK83336.1| 23S rRNA methyltransferase [Neisseria meningitidis NM418]
gi|432241090|gb|ELK96620.1| 23S rRNA methyltransferase [Neisseria meningitidis 9506]
gi|432241684|gb|ELK97213.1| 23S rRNA methyltransferase [Neisseria meningitidis 9757]
gi|432246638|gb|ELL02084.1| 23S rRNA methyltransferase [Neisseria meningitidis 12888]
gi|432247573|gb|ELL03010.1| 23S rRNA methyltransferase [Neisseria meningitidis 4119]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 163 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDVMP-VALAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 222 SNDEVRNQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 281
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ NLIPFNP + S + SS++ + F+ IL+ + + TVRK G DI ACG
Sbjct: 282 VTDVPCKFNLIPFNPFPN-SGYERSSNENIRVFRDILQQAGFV-VTVRKTRGDDIDAACG 339
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 340 QLAGQVQDK 348
>gi|314933392|ref|ZP_07840757.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
gi|313653542|gb|EFS17299.1| radical SAM enzyme, Cfr family [Staphylococcus caprae C87]
Length = 364
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 105/181 (58%), Gaps = 3/181 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP NY +++ +RI+ + + ITVST GI+ I F + +N AVSLH
Sbjct: 176 IGEPFENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHG 235
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
++R ++MP RA+ +EKLM A+K YQ+ + +++ EY + GVND+ +HA L L+
Sbjct: 236 AKDEIRSRLMPINRAYNVEKLMEAIKYYQEQTNRRVTFEYGLFGGVNDQLEHARDLAHLI 295
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP N + + +T DD + F+K L+ I T+R++ G DI ACGQ
Sbjct: 296 KNLNCHVNLIPVNHVPERNYVKTPKDD-IFKFEKELK-RLGINATIRREQGSDIDAACGQ 353
Query: 180 L 180
L
Sbjct: 354 L 354
>gi|291547144|emb|CBL20252.1| 23S rRNA m(2)A-2503 methyltransferase [Ruminococcus sp. SR1/5]
Length = 346
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 113/193 (58%), Gaps = 7/193 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP++NY LV VRI+T GL +S + +TVST GIV + + + LA+SLH
Sbjct: 157 GEPMDNYDNLVRFVRILTDENGLG--ISQRNVTVSTCGIVPKMYDLAEEKLQITLALSLH 214
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP + R ++MP A + ++++++A + Y + ++I EY ++ GVND E+ A QL
Sbjct: 215 APNDEKRQELMPIANKYSMDEVLDACRNYFDKTGRRITFEYSLVAGVNDSEEDARQLAGR 274
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ VNLIP NPI S R S+ V +F KI Y I T+R++MG DI GACG
Sbjct: 275 IKGINCHVNLIPVNPIKERSYVR-STRQAVENF-KIKLEKYGINVTIRREMGSDIDGACG 332
Query: 179 QLVVNLPDKISAK 191
QL + +K ++
Sbjct: 333 QLRKSYMEKTESE 345
>gi|254283024|ref|ZP_04957992.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
gi|219679227|gb|EED35576.1| radical SAM enzyme, Cfr family [gamma proteobacterium NOR51-B]
Length = 380
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V ++ +MT + +S +R+T+ST G+V A++K ++ ++LA+SLH
Sbjct: 178 MGEPLLNFDNVVSSMSLMTDDWAYGLSKRRVTLSTSGVVPALDKL-AECSDVSLAISLHG 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + +P+ +L+ + + Y Q ++++ + IEY +L GVND+ +HA QL
Sbjct: 237 PTDEIRNRIVPINKRYPIAELLRSARNYIDAQSDTKRVVTIEYTLLAGVNDQVEHARQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL+ F +NLIPFN S F S + VS F ++L + + TVR G DI A
Sbjct: 297 VLLKDFPCKINLIPFNDFPH-SGFTRPSGNAVSRFWQVLIDAGYV-VTVRTTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 355 CGQLVGEVVDR 365
>gi|117619957|ref|YP_856292.1| ribosomal RNA large subunit methyltransferase N [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|205829708|sp|A0KJ41.1|RLMN_AERHH RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|117561364|gb|ABK38312.1| radical SAM enzyme, Cfr family [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 367
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 112/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+R+M + +S +R+T+ST G+V A++ D + LA+SLHA
Sbjct: 161 MGEPLLNLANVVPAMRLMMDDFGYGISKRRVTISTSGVVPALDML-GDQIDVALAISLHA 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + +E+ + ++ Y S ++ +EY++LD +ND+ QHAH+L
Sbjct: 220 PNDKLRSEIMPINDKYNIEEFLAGVRRYLGKSNANGGRVTVEYVLLDHINDDMQHAHELA 279
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
K+L+ +NLIPFNP + + S+ ++ F K+L Y VRK G DI A
Sbjct: 280 KVLKDTPSKINLIPFNPFPG-NPYGKPSNSRIDRFSKVLM-EYGFTVIVRKTRGDDIDAA 337
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 338 CGQLVGEVIDR 348
>gi|365920703|ref|ZP_09445025.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
gi|364577686|gb|EHM54940.1| 23S rRNA m2A2503 methyltransferase [Cardiobacterium valvarum F0432]
Length = 367
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++ A R+M F +S +R+T+ST GIV AI+ ++ L+LAVSLHA
Sbjct: 166 MGEPLVNFNNVLPATRLMMDDYAFGLSKRRVTLSTSGIVPAIHALR-EVTDLSLAVSLHA 224
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQK-IFIEYIMLDGVNDEEQHAHQLGK 117
P ++R QI+P + L+ L++A +Y Q N Q + EY+ML GVND +HA QL +
Sbjct: 225 PNDELRNQIVPVNARYGLDALLDACHQYVQHNGQHGGVTWEYVMLRGVNDSLEHARQLVE 284
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFN S+F S + +FQ+ L + + T+RK G+DI AC
Sbjct: 285 LLRGIPGKINLIPFNAFPG-SRFECSKRGDILAFQRYLTENGYV-ATIRKTRGEDIDAAC 342
Query: 178 GQLVVNLPDKISAKSTPPVTDIEDL 202
GQLV + D+ + ++E L
Sbjct: 343 GQLVGQVKDRSRRERKLSRKEVETL 367
>gi|225075197|ref|ZP_03718396.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
gi|224953372|gb|EEG34581.1| hypothetical protein NEIFLAOT_00197 [Neisseria flavescens
NRL30031/H210]
Length = 398
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEP+ N+ +V A+ IM + +S +R+TVST G+V +++ +P + LAVSLHA
Sbjct: 199 MGEPMANFDNVVTALSIMLDDHGYGLSRRRVTVSTSGMVPQMDRLRDAMP-VALAVSLHA 257
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQ-KNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
+VR QI+P + +PL++LM A + Y K + I EY+MLDG+ND+ QHA +L +L
Sbjct: 258 SNDEVRDQIVPLNKKYPLKELMAACQRYLVKAPRDFITFEYVMLDGINDKAQHARELIEL 317
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
++ NLIPFNP + S + S+++ + F+ IL+ TVRK G DI ACG
Sbjct: 318 VKDVPCKFNLIPFNPFPN-SGYERSTNENIRVFRDILQ-QVGFVVTVRKTRGDDIDAACG 375
Query: 179 QLVVNLPDK 187
QL + DK
Sbjct: 376 QLAGQVQDK 384
>gi|350561447|ref|ZP_08930285.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780479|gb|EGZ34797.1| radical SAM enzyme, Cfr family [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 377
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 115/190 (60%), Gaps = 6/190 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A+V+AV +M + +S +R+TVST G+V A+++ + + LAVSLHA
Sbjct: 169 MGEPLANVEAVVDAVDLMLDDNAYGLSKRRVTVSTSGLVPALDRLGAST-DVALAVSLHA 227
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQHAHQLGK 117
P +R +++P R +P+ +L++A + Y ++ ++ EY++L G+ND+ QHA +L
Sbjct: 228 PNDALRDRLVPINRKYPIRELLDACRRYTRDGARHHRVTFEYVLLAGINDQPQHARELIT 287
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
LL +NLIPFNP S F S + V F+K+L + + T VR+ G DI AC
Sbjct: 288 LLRDVPCKINLIPFNPFPG-SPFVRPSANAVQVFEKLLDDAGFV-TIVRRTRGDDIDAAC 345
Query: 178 GQLVVNLPDK 187
GQLV + D+
Sbjct: 346 GQLVGQVADR 355
>gi|303252097|ref|ZP_07338266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248296|ref|ZP_07530322.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649079|gb|EFL79266.1| hypothetical protein APP2_1072 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306855230|gb|EFM87407.1| hypothetical protein appser2_12750 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 393
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM + +S +R+T+ST G+V A++ + + LA+SLHA
Sbjct: 187 MGEPLLNLNNVIPAMEIMLDDFAYGLSKRRVTLSTAGVVPALDIMREKID-VALAISLHA 245
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +IMP + + +E LM+++ +Y + S K+ IEY++LD VND +HAHQL
Sbjct: 246 PNDELRDEIMPINKKYNIEMLMDSVHKYLEVSNANHGKVTIEYVLLDHVNDGTEHAHQLA 305
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ +V FQK L Y VRK G DI A
Sbjct: 306 EVLKNTPCKINLIPWNPFPE-APYGKSSNSRVDRFQKTLM-EYGFTVIVRKTRGDDIDAA 363
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 364 CGQLAGDVIDR 374
>gi|149010606|ref|ZP_01831977.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
SP19-BS75]
gi|421267971|ref|ZP_15718843.1| 23S rRNA methyltransferase [Streptococcus pneumoniae SPAR95]
gi|147765087|gb|EDK72016.1| hypothetical protein CGSSp19BS75_04607 [Streptococcus pneumoniae
SP19-BS75]
gi|395871395|gb|EJG82501.1| 23S rRNA methyltransferase [Streptococcus pneumoniae SPAR95]
Length = 361
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 1 MGEPLNNYAALVEAV-RIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
+GEP +NY ++ V I + + IT+ST G+ H I F + +NLAVSLHA
Sbjct: 162 IGEPFDNYNNVLNFVCTINDDKGMAIGARHITISTSGLAHKIRDFADEGVQVNLAVSLHA 221
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P ++R IM RAFP+EKL A++ Y + + +++ EYIML+ VND + A +L +LL
Sbjct: 222 PNNELRSSIMKINRAFPIEKLFAAIEYYIETTNRRVTFEYIMLNEVNDGVEQALELAELL 281
Query: 120 ETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ + + VNLIP+NP+ Q+ S ++V +F L+ + VR++ G DI AC
Sbjct: 282 KNIKKLSYVNLIPYNPVSEHDQYSRSPKERVLAFYDTLKKK-GVNCVVRQEHGTDIDAAC 340
Query: 178 GQLVVNLPDKISAKSTPPV 196
GQL N + K+ V
Sbjct: 341 GQLRSNTMKRDRQKAVAAV 359
>gi|379725016|ref|YP_005317147.1| protein RlmN2 [Paenibacillus mucilaginosus 3016]
gi|386727765|ref|YP_006194091.1| protein RlmN2 [Paenibacillus mucilaginosus K02]
gi|378573688|gb|AFC33998.1| RlmN2 [Paenibacillus mucilaginosus 3016]
gi|384094890|gb|AFH66326.1| protein RlmN2 [Paenibacillus mucilaginosus K02]
Length = 360
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ L++ + ++ GL + + ITVST G+ I +F +NLA+SL
Sbjct: 162 IGEPFDNFTNLIDFLGVVIDHKGLA--IGARHITVSTSGLTQKIKEFADLNLRVNLAISL 219
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM A+ Y + Q++ IEYI+L VND +HA +L +
Sbjct: 220 HAPNNELRSRIMKINKALPIEKLMEAMDYYWAKTNQRVTIEYILLKDVNDRTEHALELAE 279
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + V VNLIP+NP+ SQ++ + + V +F L+ + +VR + G DI
Sbjct: 280 LLADRKQSVNVNLIPYNPVDEHSQYQRTEKESVRAFYDTLKKQ-GLSCSVRLEHGTDIDA 338
Query: 176 ACGQL 180
ACGQL
Sbjct: 339 ACGQL 343
>gi|317121759|ref|YP_004101762.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
DSM 12885]
gi|315591739|gb|ADU51035.1| 23S rRNA m(2)A-2503 methyltransferase [Thermaerobacter marianensis
DSM 12885]
Length = 448
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 112/186 (60%), Gaps = 13/186 (6%)
Query: 1 MGEPLNNYAALVEAVRIM-----TGLPFQVSPKRITVSTVGIVHAINKF-HSDLPGLNLA 54
+GEPL N A ++ +R+ G+ + + +TVST G+V I + H+ LP + LA
Sbjct: 257 IGEPLQNLDATLQFLRVAHHPQGAGISY----RHMTVSTSGLVPRIRQLAHAGLP-ITLA 311
Query: 55 VSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQ 114
VSLHAP +R +MP R +P+ +LM+A +EY + + ++I EY++++ VND +HA +
Sbjct: 312 VSLHAPNDALRSWLMPVNRRWPIAELMDACREYVERTGRRITFEYVLIEDVNDRPEHAAE 371
Query: 115 LGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174
L L+ VNLIP+NP+ S FR S ++V +F LR + TVR+++GQ I
Sbjct: 372 LADLVAGLNGHVNLIPWNPV-SERPFRAPSPERVQAFVAALR-RRGVNVTVRRELGQRIE 429
Query: 175 GACGQL 180
ACGQL
Sbjct: 430 AACGQL 435
>gi|424032150|ref|ZP_17771570.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|424045068|ref|ZP_17782635.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
gi|408876155|gb|EKM15284.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-01]
gi|408886922|gb|EKM25572.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-03]
Length = 375
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYDHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|212555780|gb|ACJ28234.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 242
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 111/191 (58%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N ++ A+ IM F +S +R+TVST G+V A++ D + LAVS+HA
Sbjct: 36 MGEPLLNLKNVIPAMDIMLDDFGFSLSKRRVTVSTSGVVPALDIL-GDALDVALAVSIHA 94
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R ++P + +PLE + ++ Y S + ++ +EY+MLD +ND AH+L
Sbjct: 95 PNDELRDVLVPVNKKYPLEDFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTDQAHELA 154
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KL++ VNLIPFNP S + SS+ ++ F K+L Y + VRK G DI A
Sbjct: 155 KLMKDTPCKVNLIPFNPYPG-SPYGRSSNSRIDRFSKVLM-EYGLTVIVRKTRGDDIDAA 212
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 213 CGQLAGDIRDR 223
>gi|261252176|ref|ZP_05944749.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417955687|ref|ZP_12598696.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260935567|gb|EEX91556.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342812341|gb|EGU47345.1| ribosomal RNA large subunit methyltransferase N [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 374
Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 114/191 (59%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R QIMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDELRSQIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
L++ +NLIPFNP S ++ S+ ++ FQK L Y TVRK G DI A
Sbjct: 286 VLMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYEHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|294101228|ref|YP_003553086.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
gi|293616208|gb|ADE56362.1| radical SAM enzyme, Cfr family [Aminobacterium colombiense DSM
12261]
Length = 347
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 110/181 (60%), Gaps = 4/181 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPFQ-VSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N AL ++++I+ + + + +T+ST GIV I + L+VSLH
Sbjct: 160 MGEPLLNQEALFKSIKILNHPKMRGLGARHMTISTAGIVPGIRALTELEIPVRLSVSLHG 219
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
+R ++MP + +PL L+ AL++YQ+ + ++ IEY+M+D VND + A++L L+
Sbjct: 220 TNDMLRNKLMPINQQYPLGSLIEALRDYQQKTGDRVTIEYVMIDRVNDNTEQAYELAALM 279
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ VNLIP+NP+ + +R SS +++ +F KIL NI +R++ G DI+ ACGQ
Sbjct: 280 NGLSIYVNLIPYNPVDAT--YRRSSQERIKAFGKIL-SELNIEYEIRREKGSDINAACGQ 336
Query: 180 L 180
L
Sbjct: 337 L 337
>gi|126649673|ref|ZP_01721909.1| Radical SAM family enzyme [Bacillus sp. B14905]
gi|126593392|gb|EAZ87337.1| Radical SAM family enzyme [Bacillus sp. B14905]
Length = 380
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 113/183 (61%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NY A++ ++++ GL + + ITVST GIV I +F + +N AVSL
Sbjct: 192 IGEPFDNYDAMMNFLKVINHEKGL--NIGARHITVSTSGIVPKIYQFADEQLQINFAVSL 249
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP Q+ R ++MP ARA+ LE+LM A++ Y K + +++ EY ++ G ND + A +L
Sbjct: 250 HAPNQEARQKLMPIARAYKLEELMEAVRYYTKKTGRRVSFEYGLMSGENDSVEIAEELSA 309
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
L++ + VNLIP N + RTS ++ +F+K L+ + I T+R++ G DI+ AC
Sbjct: 310 LIKGIKCHVNLIPVNYVPERDYVRTSR-SQIFAFEKTLKKN-GINVTIRREQGSDIAAAC 367
Query: 178 GQL 180
GQL
Sbjct: 368 GQL 370
>gi|288554554|ref|YP_003426489.1| ribosomal RNA large subunit methyltransferase N [Bacillus
pseudofirmus OF4]
gi|288545714|gb|ADC49597.1| ribosomal RNA methyltransferase N, heat shock prot [Bacillus
pseudofirmus OF4]
Length = 360
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +N+ +V+ + IM GL + + ITVST G+ I +F +NLA+SL
Sbjct: 163 IGEPFDNFDNMVDFLEIMKDHKGLA--IGARHITVSTSGLADKIYEFADLKLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP ++R +IM +A P+EKLM A+ Y + + +KI IEYI+L GVND+ +HA +L +
Sbjct: 221 HAPNNELRTKIMKINKAIPIEKLMKAIDYYLEKTNRKITIEYILLKGVNDQREHAKELAE 280
Query: 118 LLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
+ + + VNLIP+NP+ Q++ S + + F L+ + I VR + G DI
Sbjct: 281 MFKDKRHLTYVNLIPYNPVDEHGQYQRSIKEDILGFYDELKKN-GINCGVRLEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>gi|424038688|ref|ZP_17777220.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
gi|408893832|gb|EKM30909.1| ribosomal RNA large subunit methyltransferase N [Vibrio cholerae
HENC-02]
Length = 375
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N L+ A+ IM L F +S +R+TVST G+V +++ + + LA+SLHA
Sbjct: 167 MGEPLLNMKNLIPALEIMLDDLGFGLSKRRVTVSTSGVVSGLDQMTGKID-VALAISLHA 225
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +IMP + ++ + +++ Y +S + K+ +EY++LD VND+ HA +L
Sbjct: 226 PNDKLRSEIMPINDRWDIQDFLASVRRYIASSNANRGKVTVEYVLLDHVNDDMDHARELA 285
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+L++ +NLIPFNP S ++ S+ ++ FQK L Y+ TVRK G DI A
Sbjct: 286 ELMKDTPCKINLIPFNPYPG-SPYKKPSNSRIDRFQKTLM-QYDHTVTVRKTRGDDIDAA 343
Query: 177 CGQLVVNLPDK 187
CGQLV ++ D+
Sbjct: 344 CGQLVGDVIDR 354
>gi|182415989|ref|YP_001821055.1| radical SAM protein [Opitutus terrae PB90-1]
gi|205829654|sp|B2A0B9.1|RLMN3_OPITP RecName: Full=Probable dual-specificity RNA methyltransferase RlmN
3; AltName: Full=23S rRNA
(adenine(2503)-C(2))-methyltransferase 3; AltName:
Full=23S rRNA m2A2503 methyltransferase 3; AltName:
Full=Ribosomal RNA large subunit methyltransferase N 3;
AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase
3; AltName: Full=tRNA m2A37 methyltransferase 3
gi|177843203|gb|ACB77455.1| radical SAM enzyme, Cfr family [Opitutus terrae PB90-1]
Length = 374
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 108/183 (59%), Gaps = 7/183 (3%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL NY AL+ A+ I+ GL F +RITVST G+V I + + G LA+SL
Sbjct: 180 MGEPLANYDALIRALTILNADWGLGF--GARRITVSTSGLVPKILQLADEPLGFRLAISL 237
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
H +VR +IMP +AFPL KL+ A+K + + + I +E+I++DGVND + A +L
Sbjct: 238 HGATDEVREKIMPVNKAFPLAKLLPAVKAFSEKHGRMITLEFILIDGVNDSLEQAEKLRD 297
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177
+ VNLIP+N + ++ ++ S + F +LR + + T+R++ G DI AC
Sbjct: 298 IALDLHAHVNLIPYNTVEGLA-WKRPSITRQERFADVLR-ARRVSVTLRREKGHDIDAAC 355
Query: 178 GQL 180
GQL
Sbjct: 356 GQL 358
>gi|404493665|ref|YP_006717771.1| ribosomal RNA large subunit methyltransferase N [Pelobacter
carbinolicus DSM 2380]
gi|123729427|sp|Q3A2Z4.1|RLMN_PELCD RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName:
Full=23S rRNA (adenine(2503)-C(2))-methyltransferase;
AltName: Full=23S rRNA m2A2503 methyltransferase;
AltName: Full=Ribosomal RNA large subunit
methyltransferase N; AltName: Full=tRNA
(adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA
m2A37 methyltransferase
gi|77545701|gb|ABA89263.1| 23S rRNA (2-methyl-A2503)-methyltransferase [Pelobacter
carbinolicus DSM 2380]
Length = 371
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 119/185 (64%), Gaps = 12/185 (6%)
Query: 1 MGEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL+N +V+A++I+ GL + SP+++T+ST G+V + + + +NLAVSL
Sbjct: 164 MGEPLHNLDNVVKALQILYMPQGLDY--SPRKVTLSTAGLVPQMQELGKRVR-VNLAVSL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
+A +VR ++MP + +PL++LM A ++Y +++++I EYI++ VND +Q A +L K
Sbjct: 221 NATTDEVRNRLMPVNQRYPLQQLMAACRQYPLHAKKRITFEYILIRDVNDSDQDARRLVK 280
Query: 118 LLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RGSYNIRTTVRKQMGQDISG 175
LL + VN+IPFN S S+FR +++++S FQ L G IR R GQDIS
Sbjct: 281 LLHGIKAKVNIIPFNE-HSASEFRAPTEERISRFQGYLLDHGMVAIR---RASKGQDISA 336
Query: 176 ACGQL 180
ACGQL
Sbjct: 337 ACGQL 341
>gi|339024848|ref|ZP_08646746.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter tropicalis
NBRC 101654]
gi|338750147|dbj|GAA10050.1| iron-sulfur (Fe-S) cluster redox enzyme [Acetobacter tropicalis
NBRC 101654]
Length = 404
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 112/182 (61%), Gaps = 5/182 (2%)
Query: 1 MGEPLNNYAALVEAVRI-MTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY + +A++I M G +S +RIT+ST G+V +++ +L G+NLAVSLHA
Sbjct: 214 MGEPLYNYENIAKAMKIIMDGEGIGLSRRRITLSTSGVVPLMDRCGDEL-GINLAVSLHA 272
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKL 118
D+R QI+P R +P+E+++ A + Y S ++I EYIML GVND E A +L +L
Sbjct: 273 VRNDLRDQIVPLNRKYPIEEVLAACRRYPAASNARRITFEYIMLRGVNDSEADARELVRL 332
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
+ VNLIPFNP S +R S+ ++ + F I+ + + +R G+DI ACG
Sbjct: 333 ISGIPAKVNLIPFNPWPG-SDYRPSTREQQNKFADIIMDA-GFASPIRTPRGRDILAACG 390
Query: 179 QL 180
QL
Sbjct: 391 QL 392
>gi|315634916|ref|ZP_07890198.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
gi|315476468|gb|EFU67218.1| cfr family radical SAM enzyme [Aggregatibacter segnis ATCC 33393]
Length = 384
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A +V A+ IM + +S +R+T+ST G+V A++ S + + LA+SLHA
Sbjct: 178 MGEPLLNVANVVPAMEIMLDDFAYGLSKRRVTLSTSGVVPALDNL-SKMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY---QKNSQQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + ++ L++++ Y + K+ IEY+MLD VND +HAHQL
Sbjct: 237 PNDELRDEIVPLNKKYNIKTLIDSVNRYLSVSNANHGKVTIEYVMLDHVNDHVEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
++L+ +NLIP+NP + + SS+ ++ FQK L Y + VRK G DI A
Sbjct: 297 EVLKNTPCKINLIPWNPFPE-APYAKSSNTRIDRFQKTLM-EYGLTVIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,931,864,808
Number of Sequences: 23463169
Number of extensions: 107642136
Number of successful extensions: 273924
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3683
Number of HSP's successfully gapped in prelim test: 238
Number of HSP's that attempted gapping in prelim test: 261319
Number of HSP's gapped (non-prelim): 3943
length of query: 205
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 69
effective length of database: 9,168,204,383
effective search space: 632606102427
effective search space used: 632606102427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)