BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028700
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2
OS=Protochlamydia amoebophila (strain UWE25) GN=rlmN2
PE=3 SV=2
Length = 358
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 116/183 (63%), Gaps = 3/183 (1%)
Query: 1 MGEPLNNYAALVEAVRIMTGLPF-QVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++V ++R+++ F +S +RITVSTVG+V I + + +NL +SLHA
Sbjct: 159 MGEPLKNYESVVASIRVLSHPDFCNISQRRITVSTVGVVEGIKRLSKEGLKVNLVLSLHA 218
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLL 119
P Q +R +I+P AR +PLE+++ ++ EY + +++ I EY +L G+ND HAH+L LL
Sbjct: 219 PNQHIRKKIIPYARKYPLEEILESMDEYAQKTKRDITFEYTLLAGINDHPDHAHELAHLL 278
Query: 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQ 179
+ Q VNLIP+NPI + + + + F+ +L GS+ I T R G DI ACGQ
Sbjct: 279 KGKQCTVNLIPYNPIPGL-RLKRPEKKAIKQFRSVLYGSH-IVNTCRYTKGDDIGAACGQ 336
Query: 180 LVV 182
L +
Sbjct: 337 LAL 339
>sp|Q8R9T4|RLMN_THETN Probable dual-specificity RNA methyltransferase RlmN
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=rlmN PE=3 SV=1
Length = 342
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 120/180 (66%), Gaps = 3/180 (1%)
Query: 2 GEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAP 60
GEP +NY +++ ++I+ ++ + IT+STVGIV I +F + +NL++SLHAP
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAP 216
Query: 61 VQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLE 120
++R ++MP RA+PLE+LM A + Y + + ++I EY ++DGVND+++HA+QL LL+
Sbjct: 217 NNELRNELMPINRAYPLEELMKACRYYIEKTNRRITFEYALIDGVNDKKEHAYQLVDLLK 276
Query: 121 TFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQL 180
VNLIP N + + FR S+++KV F+KI+ + I TVR+++G DI ACGQL
Sbjct: 277 GMLCHVNLIPINYVKEIG-FRKSNNEKVMMFKKIIENA-GITCTVRRELGSDIEAACGQL 334
>sp|Q0VND7|RLMN_ALCBS Dual-specificity RNA methyltransferase RlmN OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=rlmN PE=3 SV=1
Length = 381
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/191 (45%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL NY ++ A+RIM L + + KRITVST G++ +N+ DL ++LAVSLHA
Sbjct: 168 MGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQLSEDLD-VSLAVSLHA 226
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK---IFIEYIMLDGVNDEEQHAHQLG 116
P ++R Q++P R +PL+ LM A K Y KN + I +EY+ML VND+ +HA QL
Sbjct: 227 PNDELRNQLVPLNRKYPLKDLMAACKRYSKNITHRHNTITMEYVMLRDVNDKPEHARQLV 286
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
KLL V VNLIPFNP R+ +D + F K L + + TTVR G DI A
Sbjct: 287 KLLNGIPVKVNLIPFNPFPHAGYERSRKND-ILEFHKYLNDN-GVMTTVRTTRGDDIDAA 344
Query: 177 CGQLVVNLPDK 187
CGQLV + D+
Sbjct: 345 CGQLVGQVKDR 355
>sp|Q67PQ7|RLMN_SYMTH Probable dual-specificity RNA methyltransferase RlmN
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=rlmN PE=3 SV=1
Length = 371
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 117/182 (64%), Gaps = 6/182 (3%)
Query: 2 GEPLNNYAALVEAVRIM---TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEPL NY +++AVR++ GL + + IT+ST GIV + + + + LA+SLH
Sbjct: 182 GEPLENYDHVLKAVRLVHDPEGL--NIGYRHITISTSGIVPGMRRLAEEGLPITLALSLH 239
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP AR +PL +++ A +EY + + +++ EYI+++GVND + A QL +L
Sbjct: 240 APTDELRRQLMPVARIWPLAEVLAAAREYGEKTGRRVTYEYILIEGVNDGPEEARQLARL 299
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ VNLIP NP+ Q+R ++V+ F++IL S I TTVR++MG +I ACG
Sbjct: 300 LKGALAHVNLIPMNPVAERPQYRRPGPERVNRFKEILE-SNGIATTVRREMGGEIDAACG 358
Query: 179 QL 180
QL
Sbjct: 359 QL 360
>sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1
Length = 342
Score = 144 bits (364), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 10/187 (5%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
MGEPL N +++ A+R++ G+ F S +RIT+ST G+V + + + P +NLAVSL
Sbjct: 160 MGEPLANLDSVLRAIRVIAEPNGMAF--SHRRITLSTAGLVPQLRRLGRESP-VNLAVSL 216
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HA ++R ++MP R +PLE LM A +EY +++I EYI+LDG+ND+ + A QL K
Sbjct: 217 HAAENELRAELMPVNRTYPLEVLMAACREYPLPPRKRITFEYILLDGINDDPKQAKQLVK 276
Query: 118 LLETFQVVVNLIPFNPI-GSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
LL + VNL+PFNP GSV FR S+ +V +FQ+ L+ + I T VR+ G +I A
Sbjct: 277 LLHGIRAKVNLMPFNPHPGSV--FRKPSEQRVLAFQEALQNA-RITTHVRRSRGGEIGAA 333
Query: 177 CGQLVVN 183
CGQLV
Sbjct: 334 CGQLVAE 340
>sp|A8AD69|RLMN_CITK8 Dual-specificity RNA methyltransferase RlmN OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rlmN
PE=3 SV=1
Length = 388
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P R + +E ++A++ Y + S Q ++ IEY+MLD +ND +HAHQL
Sbjct: 241 PNDEIRDEIVPINRKYNIETFLDAVRRYLQKSNANQGRVTIEYVMLDHINDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B0K1Y9|RLMN_THEPX Probable dual-specificity RNA methyltransferase RlmN
OS=Thermoanaerobacter sp. (strain X514) GN=rlmN PE=3
SV=1
Length = 342
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 120/182 (65%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY +++ ++I+ GL + + IT+ST GIV I +F + +NL++SLH
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPHGLG--IGSRHITISTCGIVPKIYQFADEKLQVNLSISLH 214
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP +A+PLE+LM A K Y ++++I EY +++GVND+++HA+QL L
Sbjct: 215 APNDELRTQLMPINKAYPLEELMKACKYYVDKTRRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ +NLIP N + + F+ ++++KV F++I+ + I TVR+++G DI ACG
Sbjct: 275 LKGMLCHINLIPINYVREIG-FKKANNEKVMMFKRIIEDA-GISCTVRRELGSDIEAACG 332
Query: 179 QL 180
QL
Sbjct: 333 QL 334
>sp|B0KA06|RLMN_THEP3 Probable dual-specificity RNA methyltransferase RlmN
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=rlmN PE=3 SV=1
Length = 342
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 120/182 (65%), Gaps = 7/182 (3%)
Query: 2 GEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLH 58
GEP +NY +++ ++I+ GL + + IT+ST GIV I +F + +NL++SLH
Sbjct: 157 GEPFDNYDEVMKFIKIVNNPHGLG--IGSRHITISTCGIVPKIYQFADEKLQVNLSISLH 214
Query: 59 APVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
AP ++R Q+MP +A+PLE+LM A K Y ++++I EY +++GVND+++HA+QL L
Sbjct: 215 APNDELRTQLMPINKAYPLEELMKACKYYVDKTRRRITFEYSLIEGVNDKKEHAYQLVDL 274
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L+ +NLIP N + + F+ ++++KV F++I+ + I TVR+++G DI ACG
Sbjct: 275 LKGMLCHINLIPINYVREIG-FKKANNEKVMMFKRIIEDA-GISCTVRRELGSDIEAACG 332
Query: 179 QL 180
QL
Sbjct: 333 QL 334
>sp|A1WE19|RLMN_VEREI Dual-specificity RNA methyltransferase RlmN OS=Verminephrobacter
eiseniae (strain EF01-2) GN=rlmN PE=3 SV=1
Length = 391
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 121/191 (63%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N AAL+ A+R+M + +S +R+TVST G+V I++ D P + LAVSLHA
Sbjct: 165 MGEPLQNLAALLPALRVMLDDHGYGLSRRRVTVSTSGVVPMIDRLARDCP-VALAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKL 118
P +R Q++P R +P+++L+ A K Y ++ + I EY MLDGVND+ HA QL +L
Sbjct: 224 PNDALRDQLVPLNRKYPIDELLQACKRYLAHAPRDFITFEYCMLDGVNDQIGHARQLVEL 283
Query: 119 L--ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ + NLIPFNP + R S+ D++ +F ++L G+ I TTVRK G DI+ A
Sbjct: 284 VGRAAIRCKFNLIPFNPFPASGLLR-SAHDQILAFAQVL-GAAGIVTTVRKTRGDDIAAA 341
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 342 CGQLAGDVRDR 352
>sp|Q6D273|RLMN_ERWCT Dual-specificity RNA methyltransferase RlmN OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=rlmN PE=3 SV=1
Length = 398
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 192 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 250
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P D+R +IMP + + +E ++A++ Y + S Q ++ +EY+MLD +ND +HAHQL
Sbjct: 251 PTDDIRNEIMPINKKYNIEMFLSAVRRYLEKSNANQGRVTVEYVMLDHINDGTEHAHQLA 310
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+ L+ +NLIP+NP R SS+ +V F K+L Y T VRK G DI A
Sbjct: 311 ECLKDTPCKINLIPWNPFPGAPYGR-SSNSRVDRFSKVLM-EYGFTTIVRKTRGDDIDAA 368
Query: 177 CGQLVVNLPDK 187
CGQL + D+
Sbjct: 369 CGQLAGEVVDR 379
>sp|Q0A989|RLMN_ALHEH Dual-specificity RNA methyltransferase RlmN OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=rlmN PE=3 SV=1
Length = 360
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N A++ AVR+MT + +S +++T+ST G+V + + ++LAVSLHA
Sbjct: 158 MGEPLLNLEAVIPAVRLMTDDDAYGLSKRKVTISTSGVVTMLERMREQ-TDVSLAVSLHA 216
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R PLE+L+ A Y + ++I EY+MLDGVND++ HAH+L +L
Sbjct: 217 PNNALRDELVPINRKHPLERLIPACAAYIADKPHRRITWEYVMLDGVNDQDHHAHELARL 276
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP +++R S ++ F +IL+ S+ + T R GQDI GACG
Sbjct: 277 LGDIPSKVNLIPFNPFPG-ARYRCSPRGRILRFVRILQ-SHGLTATTRVTRGQDIDGACG 334
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 335 QLVGKVQDR 343
>sp|A4WD95|RLMN_ENT38 Dual-specificity RNA methyltransferase RlmN OS=Enterobacter sp.
(strain 638) GN=rlmN PE=3 SV=1
Length = 388
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y S Q ++ IEY+MLD VNDE HAHQL
Sbjct: 241 PNDEIRDEIVPVNKKYNIETFLAAVRRYLAKSNANQGRVTIEYVMLDHVNDETDHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L Y T VRK G DI A
Sbjct: 301 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-DYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|Q833B6|RLMN_ENTFA Probable dual-specificity RNA methyltransferase RlmN
OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=rlmN PE=3 SV=1
Length = 357
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 111/185 (60%), Gaps = 8/185 (4%)
Query: 1 MGEPLNNYAALVEAVRIMT---GLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSL 57
+GEP +NYA ++ +R + GL + + ITVST G+V I +F +NLA+SL
Sbjct: 163 IGEPFDNYANVMNFLRTINDDKGLA--IGARHITVSTSGLVPKIREFADSGLQVNLAISL 220
Query: 58 HAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGK 117
HAP +VR IM R+FP+EKLM A+ EY + + +++ EYIML VND +HA QL
Sbjct: 221 HAPNNEVRTSIMRINRSFPIEKLMAAIDEYIEKTNRRVTFEYIMLSQVNDRPEHAQQLAD 280
Query: 118 LLETFQVV--VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISG 175
LL + + VNLIP+NP+ Q+ SS + V F +L+ + I +RK+ G DI
Sbjct: 281 LLRNKKKLSYVNLIPYNPVSEHDQYSRSSKEAVLKFYDVLKKN-GINCVIRKEHGTDIDA 339
Query: 176 ACGQL 180
ACGQL
Sbjct: 340 ACGQL 344
>sp|Q603C0|RLMN_METCA Dual-specificity RNA methyltransferase RlmN OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=rlmN PE=3 SV=1
Length = 366
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 120/189 (63%), Gaps = 5/189 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ +V A R+M + +S +R+T+ST GIV A+++ +++ ++LAVSLHA
Sbjct: 170 MGEPLLNFGNVVAATRLMMDDFAYGLSKRRVTLSTSGIVPALDRL-AEVSDISLAVSLHA 228
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P +R +++P R +P+ +L+ A K Y +++K+ EY+MLDGVND +HA L +L
Sbjct: 229 PDDTLRNELVPINRKYPIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRL 288
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP + S +R S + ++ F + L+ + I TT RK G+DI ACG
Sbjct: 289 LSHVPSKVNLIPFNPFPN-SAYRCSHPETIARFAQTLQDAGLI-TTTRKTRGRDIDAACG 346
Query: 179 QLVVNLPDK 187
QLV + D+
Sbjct: 347 QLVGKVNDR 355
>sp|B5Z0Y6|RLMN_ECO5E Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q8XAA4|RLMN_ECO57 Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O157:H7 GN=rlmN PE=3 SV=3
Length = 384
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 118/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP + R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPAAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q8ZN52|RLMN_SALTY Dual-specificity RNA methyltransferase RlmN OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B5F1A0|RLMN_SALA4 Dual-specificity RNA methyltransferase RlmN OS=Salmonella agona
(strain SL483) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|A1WXZ3|RLMN_HALHL Dual-specificity RNA methyltransferase RlmN OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1
Length = 359
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 117/198 (59%), Gaps = 5/198 (2%)
Query: 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N+ ++ A R+ T F +S +R+T+ST G+VHAI + + ++LAVSLHA
Sbjct: 165 MGEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQR-VTDVSLAVSLHA 223
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEY-QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118
P ++R Q++P R PLE+L+ A Y + ++I EY+MLDGVND+++HA +L +
Sbjct: 224 PNNELRNQLVPLNRKNPLERLLPACHAYIAEKPHRRITWEYVMLDGVNDQDEHARELLQR 283
Query: 119 LETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACG 178
L VNLIPFNP RT D +V F L + + T+R+ G DI GACG
Sbjct: 284 LRGIPSKVNLIPFNPYPGARYGRT-PDRQVRRFADRLL-EHGLTATIRETRGDDIDGACG 341
Query: 179 QLVVNLPDKISAKSTPPV 196
QLV + D ++K P
Sbjct: 342 QLVGEIRDARASKVARPA 359
>sp|Q83K42|RLMN_SHIFL Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri
GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q0T202|RLMN_SHIF8 Dual-specificity RNA methyltransferase RlmN OS=Shigella flexneri
serotype 5b (strain 8401) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPDAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q8Z4P2|RLMN_SALTI Dual-specificity RNA methyltransferase RlmN OS=Salmonella typhi
GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B4TR97|RLMN_SALSV Dual-specificity RNA methyltransferase RlmN OS=Salmonella
schwarzengrund (strain CVM19633) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B5BAY3|RLMN_SALPK Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi
A (strain AKU_12601) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|C0PYM8|RLMN_SALPC Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi
C (strain RKS4594) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|A9N1Z8|RLMN_SALPB Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|Q5PNI4|RLMN_SALPA Dual-specificity RNA methyltransferase RlmN OS=Salmonella paratyphi
A (strain ATCC 9150 / SARB42) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B4T0Q1|RLMN_SALNS Dual-specificity RNA methyltransferase RlmN OS=Salmonella newport
(strain SL254) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B4TD95|RLMN_SALHS Dual-specificity RNA methyltransferase RlmN OS=Salmonella
heidelberg (strain SL476) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B5RCZ4|RLMN_SALG2 Dual-specificity RNA methyltransferase RlmN OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rlmN PE=3
SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B5R584|RLMN_SALEP Dual-specificity RNA methyltransferase RlmN OS=Salmonella
enteritidis PT4 (strain P125109) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|B5FR66|RLMN_SALDC Dual-specificity RNA methyltransferase RlmN OS=Salmonella dublin
(strain CT_02021853) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|Q57LI4|RLMN_SALCH Dual-specificity RNA methyltransferase RlmN OS=Salmonella
choleraesuis (strain SC-B67) GN=rlmN PE=3 SV=1
Length = 388
Score = 140 bits (352), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 182 MGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 240
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P +R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 241 PNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 300
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 301 ELLKETPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 358
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 359 CGQLAGDVIDR 369
>sp|Q3YZ35|RLMN_SHISS Dual-specificity RNA methyltransferase RlmN OS=Shigella sonnei
(strain Ss046) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q32D45|RLMN_SHIDS Dual-specificity RNA methyltransferase RlmN OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q31XX3|RLMN_SHIBS Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii
serotype 4 (strain Sb227) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B2TXU2|RLMN_SHIB3 Dual-specificity RNA methyltransferase RlmN OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rlmN PE=3
SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q1R8L6|RLMN_ECOUT Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain UTI89 / UPEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B1LNH2|RLMN_ECOSM Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B6I589|RLMN_ECOSE Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain SE11) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|P36979|RLMN_ECOLI Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain K12) GN=rlmN PE=1 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B1IWE4|RLMN_ECOLC Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|Q0TEW8|RLMN_ECOL5 Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|A1AE55|RLMN_ECOK1 Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O1:K1 / APEC GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B1XAZ2|RLMN_ECODH Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain K12 / DH10B) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|C4ZX92|RLMN_ECOBW Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B7M7M1|RLMN_ECO8A Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O8
(strain IAI1) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B7N304|RLMN_ECO81 Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli O81
(strain ED1a) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B7NRG7|RLMN_ECO7I Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
>sp|B7LDA9|RLMN_ECO55 Dual-specificity RNA methyltransferase RlmN OS=Escherichia coli
(strain 55989 / EAEC) GN=rlmN PE=3 SV=1
Length = 384
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Query: 1 MGEPLNNYAALVEAVRIM-TGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHA 59
MGEPL N +V A+ IM F +S +R+T+ST G+V A++K D+ + LA+SLHA
Sbjct: 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKL-GDMIDVALAISLHA 236
Query: 60 PVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYIMLDGVNDEEQHAHQLG 116
P ++R +I+P + + +E + A++ Y + S Q ++ IEY+MLD VND +HAHQL
Sbjct: 237 PNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLA 296
Query: 117 KLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176
+LL+ +NLIP+NP R SS+ ++ F K+L SY T VRK G DI A
Sbjct: 297 ELLKDTPCKINLIPWNPFPGAPYGR-SSNSRIDRFSKVLM-SYGFTTIVRKTRGDDIDAA 354
Query: 177 CGQLVVNLPDK 187
CGQL ++ D+
Sbjct: 355 CGQLAGDVIDR 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,346,455
Number of Sequences: 539616
Number of extensions: 2636330
Number of successful extensions: 9084
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6684
Number of HSP's gapped (non-prelim): 692
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)