Query 028700
Match_columns 205
No_of_seqs 136 out of 1166
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 15:37:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14462 ribosomal RNA large s 100.0 2.6E-47 5.7E-52 332.9 21.8 183 1-185 169-352 (356)
2 PRK14454 ribosomal RNA large s 100.0 4.3E-46 9.4E-51 324.8 21.2 182 1-184 157-339 (342)
3 PRK14461 ribosomal RNA large s 100.0 1.2E-44 2.6E-49 315.2 21.6 180 1-182 177-363 (371)
4 PRK14459 ribosomal RNA large s 100.0 1.3E-44 2.9E-49 317.2 21.3 181 1-183 185-371 (373)
5 PRK14467 ribosomal RNA large s 100.0 1.2E-44 2.7E-49 315.9 20.7 181 1-183 156-341 (348)
6 PRK14457 ribosomal RNA large s 100.0 1.8E-44 3.9E-49 314.7 21.5 180 1-183 157-342 (345)
7 PRK11194 ribosomal RNA large s 100.0 1.3E-44 2.8E-49 317.8 20.3 184 1-187 166-353 (372)
8 TIGR00048 radical SAM enzyme, 100.0 1.6E-43 3.4E-48 310.2 22.3 187 1-189 164-351 (355)
9 PRK14455 ribosomal RNA large s 100.0 2.4E-43 5.3E-48 309.1 21.5 184 1-186 168-352 (356)
10 PRK14466 ribosomal RNA large s 100.0 1.7E-42 3.8E-47 300.8 21.3 182 1-185 157-339 (345)
11 PRK14460 ribosomal RNA large s 100.0 2.2E-42 4.7E-47 302.8 21.5 183 1-186 164-347 (354)
12 PRK14453 chloramphenicol/florf 100.0 2.2E-42 4.7E-47 301.8 21.0 181 1-184 155-343 (347)
13 PRK14465 ribosomal RNA large s 100.0 4.8E-42 1E-46 298.4 20.1 180 1-183 161-341 (342)
14 PRK14456 ribosomal RNA large s 100.0 1.1E-41 2.5E-46 299.2 22.0 181 1-183 182-365 (368)
15 PRK14468 ribosomal RNA large s 100.0 1.1E-41 2.4E-46 297.4 21.7 181 1-183 152-333 (343)
16 PRK14463 ribosomal RNA large s 100.0 4.6E-41 9.9E-46 294.0 21.8 180 1-183 157-337 (349)
17 COG0820 Predicted Fe-S-cluster 100.0 7.1E-41 1.5E-45 288.3 19.2 185 1-187 161-346 (349)
18 PRK14470 ribosomal RNA large s 100.0 1.5E-40 3.3E-45 289.1 21.2 179 1-183 153-334 (336)
19 PRK14469 ribosomal RNA large s 100.0 8.5E-40 1.9E-44 285.9 21.4 182 1-185 157-339 (343)
20 PRK14464 ribosomal RNA large s 100.0 2.9E-39 6.3E-44 280.8 16.0 180 1-183 150-329 (344)
21 PRK10076 pyruvate formate lyas 100.0 1.2E-31 2.7E-36 220.1 17.6 151 2-166 47-212 (213)
22 PRK11145 pflA pyruvate formate 99.9 9.7E-25 2.1E-29 182.5 16.4 150 1-164 78-245 (246)
23 TIGR01290 nifB nitrogenase cof 99.9 2.1E-24 4.5E-29 194.4 15.3 149 1-156 87-256 (442)
24 COG1180 PflA Pyruvate-formate 99.9 4.1E-23 8.9E-28 174.4 15.7 147 2-162 92-243 (260)
25 TIGR02494 PFLE_PFLC glycyl-rad 99.9 5.9E-22 1.3E-26 169.8 14.7 145 2-160 134-295 (295)
26 COG2896 MoaA Molybdenum cofact 99.9 2.7E-21 5.7E-26 166.3 15.8 174 2-186 68-263 (322)
27 PRK13762 tRNA-modifying enzyme 99.9 1.4E-20 3E-25 163.4 19.1 151 1-163 138-295 (322)
28 TIGR03278 methan_mark_10 putat 99.8 2.1E-19 4.5E-24 160.0 17.9 149 2-163 82-247 (404)
29 TIGR02493 PFLA pyruvate format 99.8 1.1E-18 2.3E-23 144.8 18.4 143 2-156 74-233 (235)
30 PRK00164 moaA molybdenum cofac 99.8 2.1E-18 4.6E-23 150.0 16.4 172 2-185 74-270 (331)
31 PLN02951 Molybderin biosynthes 99.8 1.5E-17 3.2E-22 147.2 17.4 173 2-187 115-313 (373)
32 PRK13361 molybdenum cofactor b 99.7 7.5E-17 1.6E-21 140.5 17.4 173 2-185 70-266 (329)
33 TIGR02668 moaA_archaeal probab 99.7 1.2E-16 2.6E-21 137.3 17.0 123 2-136 65-190 (302)
34 TIGR02666 moaA molybdenum cofa 99.7 3.6E-16 7.7E-21 136.3 16.8 128 2-140 68-199 (334)
35 COG0731 Fe-S oxidoreductases [ 99.7 4E-16 8.7E-21 132.8 16.5 155 1-163 88-248 (296)
36 COG2100 Predicted Fe-S oxidore 99.6 1.5E-13 3.2E-18 117.3 16.1 113 1-123 168-284 (414)
37 TIGR02495 NrdG2 anaerobic ribo 99.5 9.1E-13 2E-17 105.9 14.2 111 2-123 71-183 (191)
38 PRK05301 pyrroloquinoline quin 99.4 4E-11 8.8E-16 106.2 18.0 141 2-155 71-218 (378)
39 TIGR02109 PQQ_syn_pqqE coenzym 99.3 7.1E-11 1.5E-15 103.8 16.7 140 2-154 62-208 (358)
40 TIGR03470 HpnH hopanoid biosyn 99.3 6E-11 1.3E-15 103.1 15.5 121 2-135 81-204 (318)
41 smart00729 Elp3 Elongator prot 99.1 1.5E-09 3.3E-14 86.5 13.9 129 1-135 59-193 (216)
42 COG1625 Fe-S oxidoreductase, r 99.0 2.4E-08 5.2E-13 88.2 14.5 153 3-164 89-254 (414)
43 PF04055 Radical_SAM: Radical 98.9 1.3E-08 2.8E-13 77.9 11.2 107 1-119 53-166 (166)
44 COG0535 Predicted Fe-S oxidore 98.9 5.1E-08 1.1E-12 84.3 15.6 121 2-135 74-199 (347)
45 PRK13758 anaerobic sulfatase-m 98.9 5E-08 1.1E-12 86.1 15.8 127 2-135 66-199 (370)
46 cd01335 Radical_SAM Radical SA 98.9 5E-08 1.1E-12 76.6 14.0 130 1-140 52-186 (204)
47 KOG2876 Molybdenum cofactor bi 98.9 3.8E-09 8.2E-14 88.3 6.4 171 2-184 68-263 (323)
48 PRK13745 anaerobic sulfatase-m 98.8 1.8E-07 3.9E-12 84.0 13.8 122 2-133 76-205 (412)
49 TIGR03822 AblA_like_2 lysine-2 98.7 1.4E-06 3E-11 76.0 17.4 137 2-156 145-291 (321)
50 PRK09240 thiH thiamine biosynt 98.6 1.6E-06 3.4E-11 77.0 15.8 145 2-156 129-286 (371)
51 TIGR03821 AblA_like_1 lysine-2 98.6 5.1E-07 1.1E-11 78.7 12.3 137 2-156 151-297 (321)
52 TIGR03279 cyano_FeS_chp putati 98.6 1.5E-06 3.3E-11 78.0 14.3 100 34-140 124-227 (433)
53 TIGR00238 KamA family protein. 98.5 2.3E-06 5E-11 74.9 13.5 139 2-156 168-314 (331)
54 PRK07094 biotin synthase; Prov 98.4 2E-05 4.3E-10 68.4 17.1 142 2-156 95-244 (323)
55 PLN02389 biotin synthase 98.4 2.1E-05 4.6E-10 70.1 16.2 139 2-156 147-293 (379)
56 COG5014 Predicted Fe-S oxidore 98.3 9.3E-06 2E-10 64.4 11.4 109 2-123 100-213 (228)
57 COG0641 AslB Arylsulfatase reg 98.3 2.8E-05 6E-10 69.3 14.8 124 2-135 65-196 (378)
58 COG1964 Predicted Fe-S oxidore 98.3 7E-06 1.5E-10 73.4 10.7 118 2-135 119-244 (475)
59 TIGR03365 Bsubt_queE 7-cyano-7 98.3 2.8E-05 6.1E-10 65.0 13.8 80 2-102 81-160 (238)
60 PRK08508 biotin synthase; Prov 98.3 3.7E-05 8E-10 65.7 14.7 149 7-171 73-228 (279)
61 TIGR02491 NrdG anaerobic ribon 98.2 1.1E-06 2.4E-11 68.6 4.0 65 2-74 72-148 (154)
62 TIGR00433 bioB biotin syntheta 98.2 0.00021 4.6E-09 61.0 17.6 118 29-156 113-236 (296)
63 TIGR00539 hemN_rel putative ox 98.2 0.00021 4.5E-09 63.1 17.7 152 2-162 60-227 (360)
64 PRK06256 biotin synthase; Vali 98.2 0.00012 2.5E-09 64.0 15.9 147 9-170 126-278 (336)
65 PRK15108 biotin synthase; Prov 98.1 0.00019 4.1E-09 63.2 16.3 140 3-156 104-251 (345)
66 COG1313 PflX Uncharacterized F 98.1 0.00018 3.9E-09 61.4 14.6 148 2-163 174-331 (335)
67 PRK05660 HemN family oxidoredu 98.1 0.00045 9.8E-09 61.5 17.6 151 2-161 67-233 (378)
68 PRK08446 coproporphyrinogen II 98.0 0.00056 1.2E-08 60.3 17.0 151 2-162 60-222 (350)
69 TIGR02351 thiH thiazole biosyn 98.0 0.00018 3.9E-09 63.8 13.9 145 2-156 128-285 (366)
70 PRK05799 coproporphyrinogen II 98.0 0.0012 2.7E-08 58.4 18.4 152 2-162 60-230 (374)
71 PRK09249 coproporphyrinogen II 97.9 0.001 2.2E-08 60.6 17.8 153 2-162 111-281 (453)
72 TIGR03820 lys_2_3_AblA lysine- 97.9 0.00061 1.3E-08 61.3 15.9 135 2-156 164-309 (417)
73 PRK05628 coproporphyrinogen II 97.9 0.0019 4.1E-08 57.3 18.3 125 2-134 68-200 (375)
74 PRK08599 coproporphyrinogen II 97.8 0.0024 5.2E-08 56.7 18.2 152 2-162 60-231 (377)
75 TIGR00538 hemN oxygen-independ 97.7 0.0029 6.2E-08 57.7 17.2 123 2-131 111-240 (455)
76 PRK08208 coproporphyrinogen II 97.7 0.0049 1.1E-07 55.8 18.4 153 2-162 100-266 (430)
77 TIGR03551 F420_cofH 7,8-dideme 97.7 0.00081 1.8E-08 59.1 12.9 144 3-156 97-265 (343)
78 TIGR01212 radical SAM protein, 97.7 0.0076 1.7E-07 52.1 18.1 152 2-164 86-256 (302)
79 PRK13347 coproporphyrinogen II 97.7 0.0071 1.5E-07 55.1 18.5 153 2-162 112-282 (453)
80 PRK08207 coproporphyrinogen II 97.6 0.01 2.2E-07 54.7 18.7 154 2-163 227-399 (488)
81 COG2108 Uncharacterized conser 97.6 0.00092 2E-08 57.9 10.8 175 2-198 87-281 (353)
82 TIGR03699 mena_SCO4550 menaqui 97.6 0.0023 5E-08 56.0 13.4 148 3-156 99-263 (340)
83 PRK14862 rimO ribosomal protei 97.4 0.0056 1.2E-07 55.6 14.4 118 9-135 216-339 (440)
84 COG1533 SplB DNA repair photol 97.4 0.0059 1.3E-07 52.8 13.8 102 11-123 105-212 (297)
85 PRK07379 coproporphyrinogen II 97.4 0.029 6.2E-07 50.4 18.7 151 2-161 75-245 (400)
86 TIGR01125 MiaB-like tRNA modif 97.4 0.0063 1.4E-07 55.0 14.4 125 2-135 195-328 (430)
87 PRK06294 coproporphyrinogen II 97.4 0.02 4.3E-07 50.9 17.0 148 2-161 67-233 (370)
88 PRK09057 coproporphyrinogen II 97.3 0.029 6.3E-07 50.0 17.9 150 2-161 64-233 (380)
89 PRK08898 coproporphyrinogen II 97.3 0.029 6.2E-07 50.3 17.7 150 2-161 82-247 (394)
90 TIGR00510 lipA lipoate synthas 97.3 0.019 4E-07 49.8 15.8 146 9-165 127-279 (302)
91 PRK06582 coproporphyrinogen II 97.3 0.039 8.4E-07 49.5 18.2 150 2-161 71-240 (390)
92 TIGR00423 radical SAM domain p 97.3 0.011 2.4E-07 51.1 14.3 145 3-156 63-230 (309)
93 PLN02428 lipoic acid synthase 97.3 0.032 6.9E-07 49.3 17.0 149 7-165 164-319 (349)
94 PRK06267 hypothetical protein; 97.2 0.026 5.6E-07 49.8 16.1 96 54-156 132-231 (350)
95 PRK12928 lipoyl synthase; Prov 97.2 0.038 8.2E-07 47.6 16.4 147 8-165 122-276 (290)
96 PRK05904 coproporphyrinogen II 97.2 0.052 1.1E-06 48.0 17.4 151 2-162 65-229 (353)
97 PTZ00413 lipoate synthase; Pro 97.1 0.062 1.3E-06 47.9 17.2 147 9-165 213-367 (398)
98 PF13394 Fer4_14: 4Fe-4S singl 97.1 0.00036 7.8E-09 51.4 2.7 56 2-61 56-113 (119)
99 PRK05481 lipoyl synthase; Prov 97.1 0.076 1.7E-06 45.7 17.4 149 8-167 115-270 (289)
100 TIGR02026 BchE magnesium-proto 97.0 0.04 8.7E-07 50.8 15.4 122 3-134 249-378 (497)
101 COG0502 BioB Biotin synthase a 96.9 0.033 7.1E-07 48.8 13.4 163 7-185 116-291 (335)
102 TIGR01210 conserved hypothetic 96.8 0.15 3.3E-06 44.3 16.8 175 7-191 86-282 (313)
103 KOG1160 Fe-S oxidoreductase [E 96.8 0.011 2.5E-07 53.2 9.6 143 1-156 362-512 (601)
104 TIGR03471 HpnJ hopanoid biosyn 96.8 0.062 1.3E-06 49.2 14.8 118 5-134 257-378 (472)
105 PRK14338 (dimethylallyl)adenos 96.7 0.063 1.4E-06 49.1 14.6 125 2-135 215-348 (459)
106 PRK09058 coproporphyrinogen II 96.7 0.24 5.3E-06 45.1 18.2 152 2-162 123-295 (449)
107 TIGR03700 mena_SCO4494 putativ 96.7 0.058 1.2E-06 47.6 13.4 140 7-156 110-272 (351)
108 TIGR00089 RNA modification enz 96.5 0.18 4E-06 45.5 15.5 117 10-135 207-332 (429)
109 PRK07360 FO synthase subunit 2 96.2 0.23 5E-06 44.2 14.4 121 3-132 118-256 (371)
110 PRK14334 (dimethylallyl)adenos 95.9 0.56 1.2E-05 42.6 15.9 116 11-135 207-330 (440)
111 PRK08629 coproporphyrinogen II 95.8 0.8 1.7E-05 41.6 16.5 145 2-155 110-265 (433)
112 PF13353 Fer4_12: 4Fe-4S singl 95.8 0.017 3.6E-07 43.5 4.7 58 1-65 60-125 (139)
113 TIGR01579 MiaB-like-C MiaB-lik 95.6 1.1 2.3E-05 40.4 16.3 118 10-135 206-331 (414)
114 PRK11121 nrdG anaerobic ribonu 95.6 0.026 5.6E-07 44.0 5.1 57 2-65 74-137 (154)
115 COG1509 KamA Lysine 2,3-aminom 95.5 0.33 7.2E-06 42.9 12.2 105 2-123 167-280 (369)
116 PRK06245 cofG FO synthase subu 95.4 0.59 1.3E-05 40.7 13.6 112 39-156 116-236 (336)
117 TIGR02826 RNR_activ_nrdG3 anae 95.3 0.04 8.6E-07 42.8 5.2 40 2-48 70-110 (147)
118 COG0602 NrdG Organic radical a 95.2 0.015 3.2E-07 47.9 2.8 32 2-39 80-111 (212)
119 PRK14332 (dimethylallyl)adenos 95.2 1.8 4E-05 39.5 16.4 116 11-135 220-344 (449)
120 PRK14326 (dimethylallyl)adenos 95.1 2.4 5.1E-05 39.4 17.2 119 8-135 223-350 (502)
121 TIGR01211 ELP3 histone acetylt 95.0 1.7 3.7E-05 40.5 16.0 122 28-156 193-330 (522)
122 TIGR01574 miaB-methiolase tRNA 95.0 1.8 4E-05 39.2 15.8 117 10-135 215-340 (438)
123 PRK08444 hypothetical protein; 95.0 0.83 1.8E-05 40.5 13.2 143 4-155 108-270 (353)
124 PRK09613 thiH thiamine biosynt 94.6 2.4 5.1E-05 39.1 15.6 146 6-156 146-305 (469)
125 PRK14331 (dimethylallyl)adenos 94.6 2.3 4.9E-05 38.6 15.5 116 11-135 214-338 (437)
126 PRK08445 hypothetical protein; 94.6 1.3 2.9E-05 39.1 13.5 111 4-123 101-224 (348)
127 PRK14328 (dimethylallyl)adenos 94.6 2.6 5.5E-05 38.3 15.7 116 11-135 216-340 (439)
128 PRK14327 (dimethylallyl)adenos 94.4 3.6 7.8E-05 38.3 16.4 121 10-139 281-408 (509)
129 cd03174 DRE_TIM_metallolyase D 94.3 0.98 2.1E-05 37.5 11.6 131 10-156 52-185 (265)
130 TIGR03550 F420_cofG 7,8-dideme 94.3 1.5 3.3E-05 38.2 13.0 77 77-156 148-232 (322)
131 COG2516 Biotin synthase-relate 94.0 0.59 1.3E-05 40.7 9.7 117 32-152 125-246 (339)
132 COG1856 Uncharacterized homolo 93.9 3.4 7.3E-05 34.6 15.7 131 9-156 74-215 (275)
133 PRK14325 (dimethylallyl)adenos 93.8 4.8 0.0001 36.5 15.9 117 10-135 217-342 (444)
134 PRK14329 (dimethylallyl)adenos 93.5 6.1 0.00013 36.3 16.6 118 10-135 241-366 (467)
135 TIGR01578 MiaB-like-B MiaB-lik 93.3 1.9 4.2E-05 38.9 12.3 80 52-135 245-326 (420)
136 PRK14335 (dimethylallyl)adenos 93.3 6.4 0.00014 36.0 16.5 91 40-135 257-351 (455)
137 PRK14340 (dimethylallyl)adenos 93.0 7 0.00015 35.7 15.6 117 11-135 217-341 (445)
138 PRK14333 (dimethylallyl)adenos 92.4 6.4 0.00014 35.9 14.4 118 9-135 222-348 (448)
139 PF06463 Mob_synth_C: Molybden 92.0 0.35 7.6E-06 36.5 4.9 63 125-187 2-85 (128)
140 PRK14337 (dimethylallyl)adenos 91.8 4.3 9.3E-05 37.0 12.6 80 52-135 261-342 (446)
141 PRK01254 hypothetical protein; 91.6 5.4 0.00012 38.4 13.2 111 8-123 467-586 (707)
142 PRK05926 hypothetical protein; 91.6 2.3 5E-05 37.9 10.4 118 4-130 126-260 (370)
143 PRK09234 fbiC FO synthase; Rev 91.6 4.2 9.2E-05 40.2 13.0 144 4-156 585-752 (843)
144 PRK14339 (dimethylallyl)adenos 90.7 13 0.00027 33.7 16.3 116 11-135 199-323 (420)
145 PRK14330 (dimethylallyl)adenos 90.5 13 0.00028 33.6 15.7 80 52-135 252-333 (434)
146 PRK00955 hypothetical protein; 90.2 5.5 0.00012 38.0 11.9 122 8-134 386-519 (620)
147 PRK14336 (dimethylallyl)adenos 87.7 21 0.00045 32.2 16.4 117 10-135 192-317 (418)
148 PRK05927 hypothetical protein; 85.9 12 0.00027 33.0 10.9 142 6-156 106-269 (350)
149 COG1243 ELP3 Histone acetyltra 85.5 30 0.00066 31.9 13.5 117 29-152 186-318 (515)
150 COG0621 MiaB 2-methylthioadeni 83.8 35 0.00076 31.3 13.9 117 11-134 214-337 (437)
151 PF14824 Sirohm_synth_M: Siroh 78.4 2.2 4.7E-05 24.0 2.1 17 28-44 5-21 (30)
152 COG2200 Rtn c-di-GMP phosphodi 73.7 43 0.00092 28.0 9.7 96 5-124 132-228 (256)
153 cd07939 DRE_TIM_NifV Streptomy 73.0 54 0.0012 27.4 15.7 135 12-161 49-183 (259)
154 TIGR00674 dapA dihydrodipicoli 72.9 42 0.00091 28.4 9.7 60 98-165 67-129 (285)
155 PRK09234 fbiC FO synthase; Rev 71.6 1.1E+02 0.0024 30.4 14.8 147 4-156 100-301 (843)
156 PRK11858 aksA trans-homoaconit 70.9 77 0.0017 28.2 17.0 152 2-170 46-200 (378)
157 COG0635 HemN Coproporphyrinoge 70.3 85 0.0018 28.5 17.3 124 2-131 96-226 (416)
158 TIGR03249 KdgD 5-dehydro-4-deo 70.1 59 0.0013 27.8 10.0 26 99-124 75-100 (296)
159 KOG3157 Proline synthetase co- 69.6 46 0.001 27.6 8.5 104 57-162 81-202 (244)
160 COG4822 CbiK Cobalamin biosynt 68.6 32 0.00068 28.7 7.4 79 80-165 154-234 (265)
161 PRK03620 5-dehydro-4-deoxygluc 67.3 76 0.0017 27.2 10.1 65 98-170 76-142 (303)
162 cd00951 KDGDH 5-dehydro-4-deox 66.7 65 0.0014 27.4 9.5 65 98-170 69-135 (289)
163 PF08902 DUF1848: Domain of un 66.1 84 0.0018 26.8 12.3 118 39-163 63-198 (266)
164 PRK04147 N-acetylneuraminate l 65.6 71 0.0015 27.2 9.6 27 98-124 73-100 (293)
165 KOG2672 Lipoate synthase [Coen 65.3 93 0.002 27.1 12.1 144 9-167 175-330 (360)
166 PRK07328 histidinol-phosphatas 65.1 83 0.0018 26.4 10.9 146 8-166 62-227 (269)
167 TIGR03128 RuMP_HxlA 3-hexulose 64.1 71 0.0015 25.3 9.4 136 6-156 9-157 (206)
168 PRK07535 methyltetrahydrofolat 63.7 40 0.00087 28.5 7.6 57 8-69 24-86 (261)
169 TIGR00109 hemH ferrochelatase. 61.8 43 0.00093 29.2 7.6 31 88-121 289-319 (322)
170 COG0296 GlgB 1,4-alpha-glucan 60.8 31 0.00067 33.1 6.9 86 100-187 150-256 (628)
171 COG1606 ATP-utilizing enzymes 60.4 28 0.00061 29.6 5.9 75 95-175 48-128 (269)
172 PF06180 CbiK: Cobalt chelatas 59.6 12 0.00026 31.8 3.7 87 69-165 147-238 (262)
173 cd03413 CbiK_C Anaerobic cobal 59.4 63 0.0014 23.2 7.7 53 111-166 43-98 (103)
174 PRK14042 pyruvate carboxylase 58.5 50 0.0011 31.5 7.9 54 1-61 146-206 (596)
175 smart00642 Aamy Alpha-amylase 57.6 62 0.0013 25.3 7.2 56 109-165 18-88 (166)
176 PRK14477 bifunctional nitrogen 56.9 2E+02 0.0042 29.0 12.0 34 95-130 645-678 (917)
177 PRK03170 dihydrodipicolinate s 55.6 1.2E+02 0.0026 25.7 9.2 27 98-124 70-97 (292)
178 cd00950 DHDPS Dihydrodipicolin 54.4 1.3E+02 0.0028 25.2 9.3 27 98-124 69-96 (284)
179 PRK12330 oxaloacetate decarbox 54.3 75 0.0016 29.7 8.1 56 1-61 147-209 (499)
180 TIGR02090 LEU1_arch isopropylm 53.5 1.6E+02 0.0035 26.0 16.4 138 2-156 42-180 (363)
181 PRK15452 putative protease; Pr 53.0 95 0.002 28.5 8.5 76 33-120 8-83 (443)
182 cd00954 NAL N-Acetylneuraminic 52.3 1.5E+02 0.0032 25.2 10.0 27 98-124 70-97 (288)
183 PF00762 Ferrochelatase: Ferro 52.2 42 0.00092 29.2 5.9 30 89-121 285-314 (316)
184 TIGR02512 Fe_only_hydrog hydro 51.2 14 0.0003 32.9 2.8 33 2-39 100-135 (374)
185 TIGR01334 modD putative molybd 49.4 1.7E+02 0.0037 25.1 9.9 79 10-115 174-252 (277)
186 COG1244 Predicted Fe-S oxidore 49.4 1.9E+02 0.0041 25.7 13.9 103 51-156 165-278 (358)
187 smart00052 EAL Putative diguan 48.2 1.4E+02 0.003 23.7 9.2 93 7-123 131-224 (241)
188 PRK09776 putative diguanylate 47.6 1.1E+02 0.0024 30.5 8.9 95 6-124 971-1066(1092)
189 COG0276 HemH Protoheme ferro-l 47.6 1.7E+02 0.0036 25.8 8.8 25 98-122 293-317 (320)
190 PLN02593 adrenodoxin-like ferr 46.6 19 0.00041 26.6 2.5 46 151-201 23-68 (117)
191 COG0320 LipA Lipoate synthase 46.4 2E+02 0.0043 25.0 11.7 104 57-163 175-283 (306)
192 cd03308 CmuA_CmuC_like CmuA_Cm 46.1 2.1E+02 0.0046 25.3 10.7 56 9-70 255-311 (378)
193 COG2221 DsrA Dissimilatory sul 46.1 90 0.002 27.4 6.9 71 95-173 30-101 (317)
194 COG1242 Predicted Fe-S oxidore 45.9 2E+02 0.0044 25.0 11.9 110 51-168 144-265 (312)
195 TIGR02313 HpaI-NOT-DapA 2,4-di 45.9 1.9E+02 0.0041 24.7 9.0 26 99-124 70-96 (294)
196 PRK00035 hemH ferrochelatase; 45.3 2E+02 0.0044 24.8 10.4 25 98-122 298-322 (333)
197 COG0826 Collagenase and relate 44.7 1.7E+02 0.0036 26.0 8.5 83 30-123 8-92 (347)
198 PRK12435 ferrochelatase; Provi 44.6 89 0.0019 27.1 6.8 31 88-122 276-306 (311)
199 TIGR02660 nifV_homocitr homoci 44.5 2.2E+02 0.0048 25.1 17.1 151 4-170 45-197 (365)
200 PRK07428 nicotinate-nucleotide 44.3 2.1E+02 0.0045 24.7 9.9 79 11-116 182-261 (288)
201 PRK02412 aroD 3-dehydroquinate 42.9 2E+02 0.0043 24.0 9.7 45 109-160 121-165 (253)
202 TIGR02931 anfK_nitrog Fe-only 42.9 90 0.0019 28.6 6.8 33 95-130 170-202 (461)
203 cd01966 Nitrogenase_NifN_1 Nit 42.6 2.6E+02 0.0056 25.2 10.4 34 95-130 158-191 (417)
204 PRK06740 histidinol-phosphatas 42.4 2.3E+02 0.0051 24.7 10.8 148 7-166 120-290 (331)
205 COG1032 Fe-S oxidoreductase [E 42.4 2.5E+02 0.0054 25.0 10.9 91 41-139 303-400 (490)
206 PF05853 DUF849: Prokaryotic p 42.2 2.1E+02 0.0046 24.2 11.3 134 2-156 53-195 (272)
207 TIGR00683 nanA N-acetylneurami 41.9 2.2E+02 0.0047 24.2 9.2 27 98-124 70-97 (290)
208 COG0269 SgbH 3-hexulose-6-phos 41.6 2E+02 0.0044 23.8 10.4 150 1-167 1-171 (217)
209 PF00070 Pyr_redox: Pyridine n 40.6 1.1E+02 0.0023 20.2 6.6 48 113-165 12-59 (80)
210 PF11823 DUF3343: Protein of u 39.8 48 0.001 22.0 3.5 34 146-181 12-45 (73)
211 TIGR01681 HAD-SF-IIIC HAD-supe 39.6 59 0.0013 23.9 4.3 34 8-46 31-65 (128)
212 COG1031 Uncharacterized Fe-S o 38.8 3.3E+02 0.0072 25.5 12.8 123 6-134 258-406 (560)
213 TIGR02932 vnfK_nitrog V-contai 38.7 3.1E+02 0.0068 25.1 10.2 32 96-130 168-199 (457)
214 PRK12581 oxaloacetate decarbox 38.6 1.5E+02 0.0033 27.4 7.5 53 2-61 156-215 (468)
215 cd01948 EAL EAL domain. This d 38.5 2E+02 0.0043 22.7 9.7 93 7-123 130-223 (240)
216 PHA03398 viral phosphatase sup 38.5 52 0.0011 28.7 4.2 35 8-47 150-184 (303)
217 cd07941 DRE_TIM_LeuA3 Desulfob 38.4 1.9E+02 0.004 24.4 7.7 63 7-85 149-218 (273)
218 cd07948 DRE_TIM_HCS Saccharomy 38.3 2.4E+02 0.0053 23.7 17.2 152 2-170 42-196 (262)
219 PLN02417 dihydrodipicolinate s 38.0 2.5E+02 0.0054 23.7 9.1 26 99-124 71-97 (280)
220 PRK14040 oxaloacetate decarbox 37.7 1.4E+02 0.0031 28.4 7.5 54 2-62 148-208 (593)
221 COG1801 Uncharacterized conser 37.5 1.9E+02 0.0041 24.5 7.5 87 30-123 38-133 (263)
222 cd07940 DRE_TIM_IPMS 2-isoprop 37.5 2.4E+02 0.0053 23.5 17.1 111 38-160 72-186 (268)
223 PRK10551 phage resistance prot 37.2 2.9E+02 0.0064 25.6 9.4 92 9-124 397-489 (518)
224 PRK12331 oxaloacetate decarbox 37.0 1.8E+02 0.004 26.6 7.8 52 3-61 148-206 (448)
225 cd07945 DRE_TIM_CMS Leptospira 36.9 2.3E+02 0.0049 24.2 8.0 92 6-120 144-244 (280)
226 PRK13575 3-dehydroquinate dehy 36.8 2.5E+02 0.0053 23.4 9.7 26 109-135 111-136 (238)
227 PF00701 DHDPS: Dihydrodipicol 36.0 2.6E+02 0.0057 23.5 8.5 26 99-124 71-97 (289)
228 COG0329 DapA Dihydrodipicolina 35.8 2.8E+02 0.0061 23.8 9.5 80 75-165 54-135 (299)
229 TIGR01428 HAD_type_II 2-haloal 35.4 42 0.00091 26.3 3.1 33 9-46 95-127 (198)
230 cd07945 DRE_TIM_CMS Leptospira 35.3 2.8E+02 0.0061 23.6 10.5 120 40-170 79-203 (280)
231 cd07940 DRE_TIM_IPMS 2-isoprop 35.0 2.7E+02 0.0058 23.2 8.2 96 6-122 140-244 (268)
232 cd00502 DHQase_I Type I 3-dehy 34.8 2.5E+02 0.0053 22.8 9.1 24 111-135 101-124 (225)
233 PRK10060 RNase II stability mo 34.6 3.5E+02 0.0075 25.8 9.7 94 7-124 539-633 (663)
234 TIGR01691 enolase-ppase 2,3-di 34.6 46 0.001 27.3 3.3 33 9-46 98-130 (220)
235 TIGR01662 HAD-SF-IIIA HAD-supe 34.5 47 0.001 24.2 3.0 34 9-47 28-69 (132)
236 COG1105 FruK Fructose-1-phosph 34.4 2.8E+02 0.006 24.3 8.1 70 6-89 143-212 (310)
237 TIGR01491 HAD-SF-IB-PSPlk HAD- 33.2 55 0.0012 25.3 3.4 34 9-47 83-116 (201)
238 PF10566 Glyco_hydro_97: Glyco 33.1 1.2E+02 0.0026 26.0 5.6 80 75-163 29-122 (273)
239 PRK14508 4-alpha-glucanotransf 33.1 68 0.0015 29.8 4.4 32 104-135 21-53 (497)
240 PRK07709 fructose-bisphosphate 33.0 3.2E+02 0.0069 23.5 12.3 90 74-170 110-213 (285)
241 TIGR01684 viral_ppase viral ph 32.7 71 0.0015 27.8 4.2 35 8-47 148-182 (301)
242 TIGR02066 dsrB sulfite reducta 32.7 1.6E+02 0.0034 26.0 6.5 64 93-163 29-93 (341)
243 KOG0693 Myo-inositol-1-phospha 32.5 73 0.0016 28.7 4.2 60 55-114 183-252 (512)
244 TIGR02079 THD1 threonine dehyd 31.8 3.8E+02 0.0083 24.1 10.1 84 77-165 308-397 (409)
245 PRK06801 hypothetical protein; 31.7 3.3E+02 0.0073 23.4 11.1 77 87-170 123-213 (286)
246 PRK09282 pyruvate carboxylase 31.4 2.3E+02 0.005 27.0 7.8 52 3-61 148-206 (592)
247 PF00563 EAL: EAL domain; Int 31.3 2.6E+02 0.0056 21.9 7.3 88 11-123 136-224 (236)
248 TIGR01108 oadA oxaloacetate de 31.2 2.3E+02 0.0049 27.0 7.6 52 3-61 143-201 (582)
249 PF00034 Cytochrom_C: Cytochro 30.9 42 0.00091 21.9 2.1 18 106-123 74-91 (91)
250 TIGR01449 PGP_bact 2-phosphogl 30.9 52 0.0011 25.8 3.0 34 9-47 88-121 (213)
251 PRK08091 ribulose-phosphate 3- 30.8 3.1E+02 0.0068 22.7 11.2 145 7-167 23-186 (228)
252 PRK14041 oxaloacetate decarbox 30.8 2.5E+02 0.0054 26.0 7.6 51 4-61 148-205 (467)
253 PRK12568 glycogen branching en 30.6 2E+02 0.0043 28.3 7.2 54 111-165 271-337 (730)
254 KOG2900 Biotin synthase [Coenz 30.3 71 0.0015 27.4 3.7 113 8-134 153-267 (380)
255 cd03313 enolase Enolase: Enola 30.2 4.1E+02 0.0089 23.9 9.1 105 73-185 259-390 (408)
256 TIGR01302 IMP_dehydrog inosine 30.2 4.3E+02 0.0092 24.1 9.8 96 9-116 250-347 (450)
257 PF00255 GSHPx: Glutathione pe 30.0 1.9E+02 0.0041 21.0 5.5 59 93-154 23-81 (108)
258 PRK12738 kbaY tagatose-bisphos 29.6 3.7E+02 0.0079 23.2 13.5 113 51-170 75-212 (286)
259 COG2759 MIS1 Formyltetrahydrof 29.4 1.9E+02 0.0041 27.0 6.4 38 90-129 367-404 (554)
260 cd04885 ACT_ThrD-I Tandem C-te 29.4 1.6E+02 0.0034 18.9 4.9 55 107-163 7-66 (68)
261 PRK09552 mtnX 2-hydroxy-3-keto 29.3 66 0.0014 25.8 3.3 34 9-47 77-110 (219)
262 PF09345 DUF1987: Domain of un 29.1 1.4E+02 0.0031 21.4 4.6 41 51-101 45-85 (99)
263 PRK08639 threonine dehydratase 29.1 4.3E+02 0.0093 23.8 10.2 85 77-166 319-409 (420)
264 KOG2965 Arginase [Amino acid t 29.0 3.8E+02 0.0083 23.2 7.8 69 51-120 235-305 (318)
265 PRK13561 putative diguanylate 28.7 5E+02 0.011 24.4 9.7 92 6-124 531-626 (651)
266 PRK07998 gatY putative fructos 28.6 3.8E+02 0.0083 23.0 11.9 79 86-170 122-209 (283)
267 cd06568 GH20_SpHex_like A subg 28.5 1.7E+02 0.0037 25.5 6.0 83 28-118 4-107 (329)
268 PLN02635 disproportionating en 28.5 85 0.0018 29.6 4.3 33 103-135 43-76 (538)
269 cd01973 Nitrogenase_VFe_beta_l 28.4 1.4E+02 0.003 27.3 5.6 32 96-130 164-195 (454)
270 cd02974 AhpF_NTD_N Alkyl hydro 28.0 2.2E+02 0.0047 20.1 7.1 48 79-128 5-52 (94)
271 PRK12737 gatY tagatose-bisphos 28.0 3.9E+02 0.0084 22.9 12.4 122 41-170 66-212 (284)
272 PLN02954 phosphoserine phospha 27.9 77 0.0017 25.2 3.5 34 9-47 87-120 (224)
273 PRK11359 cyclic-di-GMP phospho 27.7 5.4E+02 0.012 24.6 9.8 94 7-124 676-770 (799)
274 COG1212 KdsB CMP-2-keto-3-deox 27.6 3.4E+02 0.0074 22.9 7.1 19 3-21 102-120 (247)
275 TIGR01454 AHBA_synth_RP 3-amin 27.5 61 0.0013 25.5 2.8 34 9-47 78-111 (205)
276 TIGR00338 serB phosphoserine p 27.4 98 0.0021 24.5 4.0 33 9-46 88-120 (219)
277 PF06962 rRNA_methylase: Putat 27.3 1.4E+02 0.0031 22.8 4.7 117 7-134 8-126 (140)
278 PF13727 CoA_binding_3: CoA-bi 27.1 1.2E+02 0.0026 22.7 4.3 23 108-130 153-175 (175)
279 cd00952 CHBPH_aldolase Trans-o 26.8 4.1E+02 0.0089 22.8 8.7 26 99-124 78-104 (309)
280 TIGR01668 YqeG_hyp_ppase HAD s 26.5 1.8E+02 0.0039 22.4 5.3 35 8-47 45-80 (170)
281 TIGR01093 aroD 3-dehydroquinat 26.4 3.6E+02 0.0077 22.0 9.7 46 109-161 104-149 (228)
282 cd02742 GH20_hexosaminidase Be 26.4 2.2E+02 0.0047 24.4 6.2 75 39-121 16-107 (303)
283 PRK11829 biofilm formation reg 26.3 5.5E+02 0.012 24.1 9.8 92 6-124 536-631 (660)
284 cd07938 DRE_TIM_HMGL 3-hydroxy 26.1 1.8E+02 0.0039 24.6 5.6 54 3-62 143-203 (274)
285 cd06562 GH20_HexA_HexB-like Be 25.7 1.7E+02 0.0037 25.7 5.5 75 39-121 18-105 (348)
286 TIGR02064 dsrA sulfite reducta 25.4 4.1E+02 0.0089 24.0 7.9 65 95-163 82-147 (402)
287 PRK15063 isocitrate lyase; Pro 25.1 5.4E+02 0.012 23.6 8.6 96 60-165 240-344 (428)
288 PRK08508 biotin synthase; Prov 24.9 3.5E+02 0.0075 22.9 7.1 131 5-162 39-181 (279)
289 PF00809 Pterin_bind: Pterin b 24.8 2.1E+02 0.0045 23.1 5.5 54 52-132 72-125 (210)
290 PRK06552 keto-hydroxyglutarate 24.7 3.5E+02 0.0077 22.0 6.9 112 7-135 23-142 (213)
291 TIGR01489 DKMTPPase-SF 2,3-dik 24.7 93 0.002 23.7 3.3 33 10-47 76-108 (188)
292 PRK12313 glycogen branching en 24.6 2.5E+02 0.0055 26.8 6.8 53 112-165 173-238 (633)
293 PTZ00314 inosine-5'-monophosph 24.6 5.7E+02 0.012 23.7 9.7 95 10-116 268-364 (495)
294 PRK09456 ?-D-glucose-1-phospha 24.5 1.2E+02 0.0026 23.8 4.0 26 9-39 87-112 (199)
295 COG1453 Predicted oxidoreducta 24.4 3.6E+02 0.0079 24.3 7.2 93 11-120 132-226 (391)
296 TIGR01422 phosphonatase phosph 24.2 86 0.0019 25.6 3.2 33 9-46 102-134 (253)
297 TIGR01685 MDP-1 magnesium-depe 24.0 1.1E+02 0.0023 24.3 3.5 34 9-47 48-82 (174)
298 TIGR01549 HAD-SF-IA-v1 haloaci 24.0 1.2E+02 0.0027 22.3 3.8 29 9-42 67-95 (154)
299 PRK14706 glycogen branching en 23.9 2.8E+02 0.006 26.8 6.9 55 110-165 168-235 (639)
300 PRK07896 nicotinate-nucleotide 23.8 4.8E+02 0.01 22.5 9.9 81 10-117 185-265 (289)
301 cd00423 Pterin_binding Pterin 23.8 4.3E+02 0.0092 22.0 7.8 52 8-64 23-88 (258)
302 PRK14093 UDP-N-acetylmuramoyla 23.7 5.3E+02 0.012 23.5 8.6 58 99-163 339-403 (479)
303 TIGR01286 nifK nitrogenase mol 23.7 98 0.0021 28.9 3.8 110 8-130 127-254 (515)
304 COG2242 CobL Precorrin-6B meth 23.7 2.9E+02 0.0063 22.3 5.9 42 75-124 112-153 (187)
305 PRK05718 keto-hydroxyglutarate 23.6 4.1E+02 0.0089 21.7 8.1 110 7-134 25-140 (212)
306 PRK08185 hypothetical protein; 23.3 4.8E+02 0.01 22.4 11.6 122 41-170 60-208 (283)
307 PLN02779 haloacid dehalogenase 23.3 1.3E+02 0.0028 25.5 4.2 33 9-46 147-179 (286)
308 cd00019 AP2Ec AP endonuclease 23.2 3.1E+02 0.0067 22.7 6.5 13 11-23 12-24 (279)
309 PLN02770 haloacid dehalogenase 23.1 98 0.0021 25.4 3.3 34 9-47 111-144 (248)
310 COG2984 ABC-type uncharacteriz 23.0 3E+02 0.0066 24.2 6.4 66 101-175 135-204 (322)
311 PRK10826 2-deoxyglucose-6-phos 23.0 87 0.0019 25.0 2.9 33 9-46 95-127 (222)
312 PRK14024 phosphoribosyl isomer 22.9 3.1E+02 0.0066 22.6 6.3 62 99-166 135-196 (241)
313 COG0560 SerB Phosphoserine pho 22.9 98 0.0021 25.2 3.2 91 9-108 80-173 (212)
314 TIGR01544 HAD-SF-IE haloacid d 22.9 1.3E+02 0.0028 25.8 4.0 33 9-46 124-156 (277)
315 PRK14705 glycogen branching en 22.7 3E+02 0.0064 28.9 7.1 55 110-165 766-833 (1224)
316 TIGR01282 nifD nitrogenase mol 22.6 4.7E+02 0.01 24.0 8.0 69 95-170 208-288 (466)
317 PRK09195 gatY tagatose-bisphos 22.6 5E+02 0.011 22.3 12.3 122 41-170 66-212 (284)
318 TIGR01278 DPOR_BchB light-inde 22.5 6.3E+02 0.014 23.4 14.0 148 8-170 70-243 (511)
319 TIGR01490 HAD-SF-IB-hyp1 HAD-s 22.4 1.4E+02 0.0031 23.2 4.0 34 9-47 90-123 (202)
320 TIGR00737 nifR3_yhdG putative 22.3 5E+02 0.011 22.2 12.8 91 29-124 64-161 (319)
321 cd07941 DRE_TIM_LeuA3 Desulfob 22.3 4.7E+02 0.01 21.9 13.4 120 41-170 84-207 (273)
322 PF01136 Peptidase_U32: Peptid 22.3 4.2E+02 0.009 21.3 8.6 55 9-68 2-56 (233)
323 TIGR03351 PhnX-like phosphonat 22.2 92 0.002 24.7 2.9 33 9-46 90-122 (220)
324 TIGR02253 CTE7 HAD superfamily 22.1 94 0.002 24.5 3.0 29 9-42 97-125 (221)
325 TIGR01515 branching_enzym alph 21.9 2.9E+02 0.0063 26.3 6.6 70 95-165 139-224 (613)
326 PRK14988 GMP/IMP nucleotidase; 21.9 1.4E+02 0.003 24.2 3.9 33 9-46 96-128 (224)
327 cd01427 HAD_like Haloacid deha 21.8 1.2E+02 0.0026 21.0 3.3 34 9-47 27-60 (139)
328 PRK13663 hypothetical protein; 21.7 5.1E+02 0.011 24.0 7.6 81 40-126 55-136 (493)
329 cd00408 DHDPS-like Dihydrodipi 21.7 4.7E+02 0.01 21.7 9.5 27 98-124 66-93 (281)
330 COG1834 N-Dimethylarginine dim 21.5 1.8E+02 0.004 24.8 4.6 59 111-170 39-115 (267)
331 PF04002 RadC: RadC-like JAB d 21.5 1.9E+02 0.0041 21.3 4.3 67 92-163 33-103 (123)
332 PF01075 Glyco_transf_9: Glyco 21.4 3E+02 0.0065 22.1 5.9 143 12-171 2-148 (247)
333 cd01965 Nitrogenase_MoFe_beta_ 21.4 6E+02 0.013 22.8 12.9 33 99-131 158-190 (428)
334 PRK13886 conjugal transfer pro 21.3 4.9E+02 0.011 21.8 11.2 68 86-154 107-175 (241)
335 PRK01060 endonuclease IV; Prov 21.3 2.1E+02 0.0046 23.6 5.1 20 106-125 43-62 (281)
336 PRK05402 glycogen branching en 21.2 3.1E+02 0.0067 26.8 6.7 56 110-166 266-334 (726)
337 COG0633 Fdx Ferredoxin [Energy 21.2 1.1E+02 0.0023 21.9 2.8 42 151-200 25-66 (102)
338 TIGR01235 pyruv_carbox pyruvat 21.1 7.9E+02 0.017 25.6 9.8 51 4-61 684-741 (1143)
339 TIGR01656 Histidinol-ppas hist 21.1 71 0.0015 23.9 2.0 25 8-37 29-53 (147)
340 TIGR01488 HAD-SF-IB Haloacid D 21.0 1.4E+02 0.003 22.5 3.6 34 9-47 76-109 (177)
341 TIGR02660 nifV_homocitr homoci 21.0 1.8E+02 0.0039 25.7 4.7 50 6-62 139-195 (365)
342 COG0023 SUI1 Translation initi 20.7 1.2E+02 0.0025 22.2 2.8 24 99-122 42-65 (104)
343 PF14495 Cytochrom_C550: Cytoc 20.6 1.2E+02 0.0027 23.1 3.1 53 129-202 9-71 (135)
344 PF13419 HAD_2: Haloacid dehal 20.6 1.5E+02 0.0033 21.7 3.8 33 9-46 80-112 (176)
345 PRK13478 phosphonoacetaldehyde 20.4 1.1E+02 0.0024 25.4 3.1 33 9-46 104-136 (267)
346 PRK12344 putative alpha-isopro 20.3 1.9E+02 0.004 27.2 4.8 48 8-62 157-211 (524)
347 COG2108 Uncharacterized conser 20.2 6.2E+02 0.013 22.5 8.1 62 66-134 82-143 (353)
348 cd00477 FTHFS Formyltetrahydro 20.2 3.4E+02 0.0075 25.5 6.4 37 90-128 354-390 (524)
349 PF13627 LPAM_2: Prokaryotic l 20.1 35 0.00076 18.1 0.0 7 174-180 12-18 (24)
350 PRK13398 3-deoxy-7-phosphohept 20.0 5.4E+02 0.012 21.7 7.8 67 98-165 27-96 (266)
No 1
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.6e-47 Score=332.92 Aligned_cols=183 Identities=36% Similarity=0.605 Sum_probs=172.7
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++|+.++++.|++. |++++.+|+||||+|+.+.++++.+..+.+.|.+||||+|++.|+++||+++.+++++
T Consensus 169 mGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ 248 (356)
T PRK14462 169 MGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLASKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIES 248 (356)
T ss_pred CcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChHHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHH
Confidence 899999999999999999996 9999999999999999999999887643356889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++++++|....+.+|++|||||||+||++|++++|++|+++++++||||||||++ ..+|++|+++++++|+++|+ ++
T Consensus 249 ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~-~~~~~~ps~e~i~~f~~~l~-~~ 326 (356)
T PRK14462 249 IIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE-GSKFERPSLEDMIKFQDYLN-SK 326 (356)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC-CCCCCCCCHHHHHHHHHHHH-HC
Confidence 99999989877899999999999999999999999999999998999999999997 88999999999999999999 79
Q ss_pred CceEEecccccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNLP 185 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~~ 185 (205)
|+.+++|.++|+||.||||||+.+..
T Consensus 327 gi~vtvR~~~G~dI~aACGQL~~~~~ 352 (356)
T PRK14462 327 GLLCTIRESKGLDISAACGQLREKKL 352 (356)
T ss_pred CCcEEEeCCCCCchhhcCccchhhhc
Confidence 99999999999999999999987543
No 2
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.3e-46 Score=324.82 Aligned_cols=182 Identities=38% Similarity=0.686 Sum_probs=172.5
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++|+.++++.|++. |++++.+|+||||+|+.|.++++++..+.+.+++||||+|++.|++++|+++.+++++
T Consensus 157 gGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~ 236 (342)
T PRK14454 157 SGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEE 236 (342)
T ss_pred CchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHH
Confidence 899999999999999999984 9999999999999999999999998754467999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++.+++|....+.+|++|||||||+||++|++++|++|++++.++||||||||+| ..+|++|+++++++|+++++ ++
T Consensus 237 l~~~~~~~~~~~~~rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiPyn~~~-~~~~~~ps~e~l~~f~~~l~-~~ 314 (342)
T PRK14454 237 LIEACKYYINKTNRRITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIPVNEVK-ENGFKKSSKEKIKKFKNILK-KN 314 (342)
T ss_pred HHHHHHHHHHHhCCEEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEecCCCC-CCCCCCCCHHHHHHHHHHHH-HC
Confidence 99999988888899999999999999999999999999999988899999999998 78899999999999999999 79
Q ss_pred CceEEeccccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNL 184 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~ 184 (205)
|+.+++|.++|+||.||||||++..
T Consensus 315 gi~v~iR~~~G~di~aaCGQL~~~~ 339 (342)
T PRK14454 315 GIETTIRREMGSDINAACGQLRRSY 339 (342)
T ss_pred CCcEEEeCCCCCchhhcCcccchhh
Confidence 9999999999999999999998753
No 3
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.2e-44 Score=315.23 Aligned_cols=180 Identities=39% Similarity=0.690 Sum_probs=173.4
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|+|.|+++++.+.+. |++++.+|++|||+|++|.+++|.+..+.+.|++||||.+++.|.+++|..+++++++
T Consensus 177 MGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~e 256 (371)
T PRK14461 177 MGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIAD 256 (371)
T ss_pred cCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHH
Confidence 999999999999999999987 9999999999999999999999998765678999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC------CceEEEeecCCCCCCCCccCCcHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF------QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 153 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~------~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~ 153 (205)
+++.+++|.+..+++|+++|+||+|+||++|++++|+++++.+ .++||||||||+. +..|.+|+++.+++|++
T Consensus 257 Ll~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~-~~~~~~ps~~~i~~F~~ 335 (371)
T PRK14461 257 LMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVP-GTPLGRSERERVTTFQR 335 (371)
T ss_pred HHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCC-CCCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 7899999999985 77899999999999999
Q ss_pred HHHhcCCceEEeccccccccccccccccc
Q 028700 154 ILRGSYNIRTTVRKQMGQDISGACGQLVV 182 (205)
Q Consensus 154 ~l~~~~Gi~~~i~~~~g~d~~~~Cgql~~ 182 (205)
+++ .+|+.+++|.++|+||.||||||+.
T Consensus 336 ~L~-~~gi~vtiR~s~G~DI~AACGQL~~ 363 (371)
T PRK14461 336 ILT-DYGIPCTVRVERGVEIAAACGQLAG 363 (371)
T ss_pred HHH-HCCceEEEeCCCCcChhhcCccccc
Confidence 999 7999999999999999999999986
No 4
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.3e-44 Score=317.16 Aligned_cols=181 Identities=39% Similarity=0.615 Sum_probs=171.9
Q ss_pred CCccCCCHHHHHHHHHHhhc---CCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 1 MGEPLNNYAALVEAVRIMTG---LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~---~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|||||+|++++.++++.+++ .|++++.+|+||+|+|+.+.++++.+.++++.|++|||++|+++|++++|.++++++
T Consensus 185 mGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l 264 (373)
T PRK14459 185 MGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKV 264 (373)
T ss_pred CCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCH
Confidence 89999999999999999998 478889999999999999999999988765689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC---CceEEEeecCCCCCCCCccCCcHHHHHHHHHH
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF---QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 154 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~---~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~ 154 (205)
+++++++++|.+..+.+|++||+||+|+||++|++++|++|++.+ .++||||||||++ +.+|.+|+.+.+.+|++.
T Consensus 265 ~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~-~~~y~~~~~~~~~~F~~~ 343 (373)
T PRK14459 265 DEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTP-GSKWTASPPEVEREFVRR 343 (373)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCC-CCCCcCCCHHHHHHHHHH
Confidence 999999999998889999999999999999999999999999998 5799999999997 788999999999999999
Q ss_pred HHhcCCceEEecccccccccccccccccc
Q 028700 155 LRGSYNIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 155 l~~~~Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
++ ++|+.+++|.++|+||.||||||+..
T Consensus 344 L~-~~gi~~tiR~~~G~dI~aACGQL~~~ 371 (373)
T PRK14459 344 LR-AAGVPCTVRDTRGQEIDGACGQLAAE 371 (373)
T ss_pred HH-HCCCeEEeeCCCCcCHhhcCCccccc
Confidence 99 79999999999999999999999863
No 5
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.2e-44 Score=315.87 Aligned_cols=181 Identities=44% Similarity=0.685 Sum_probs=168.7
Q ss_pred CCccCCCHHHHHHHHHHhhc-CCCCCCCCcEEEEcCCcHHHHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~-~~i~~~~~~~~v~T~G~~~~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|||||+|+|++.++++.|++ .|++++.+|+||||+|+.+.++++.... +.++|.+||||+|++.|++++|.++.+++
T Consensus 156 mGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~p~~~~~~l 235 (348)
T PRK14467 156 MGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIMPISKTNTL 235 (348)
T ss_pred cChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhcCCccccCH
Confidence 89999999999999999988 4999999999999999999888876532 23578899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--ceEEEeecCCCCCCCCccCCcHHHHHHHHHHH
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 155 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l 155 (205)
+++++.+++|....+.+|++|||||||+||++|++++|++|+++++ ++||||||||++ ..+|++|+++++++|++++
T Consensus 236 ~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~-~~~~~~ps~e~i~~f~~~L 314 (348)
T PRK14467 236 EELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDP-ELPYERPELERVYKFQKIL 314 (348)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCC-CCCCCCCCHHHHHHHHHHH
Confidence 9999999999888899999999999999999999999999999975 689999999996 8899999999999999999
Q ss_pred HhcCCceEEecccccccccccccccccc
Q 028700 156 RGSYNIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 156 ~~~~Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
+ ++|+.+++|.++|+||.||||||++.
T Consensus 315 ~-~~gi~v~vR~~~G~di~aaCGqL~~~ 341 (348)
T PRK14467 315 W-DNGISTFVRWSKGVDIFGACGQLRKK 341 (348)
T ss_pred H-HCCCcEEEeCCCCcchhhcccchhHh
Confidence 9 79999999999999999999999874
No 6
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.8e-44 Score=314.67 Aligned_cols=180 Identities=39% Similarity=0.675 Sum_probs=169.1
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcC------CCceEEEeecCCCHHhhhhhcCCCCC
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDL------PGLNLAVSLHAPVQDVRCQIMPAARA 74 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~------~~~~l~~slk~~d~~~~~~i~~~~~~ 74 (205)
|||||+|++++.++++.+++. ++++.+++||||+|..+.++++++.. +++.|++|||++|++.|++++|++..
T Consensus 157 mGEPlln~~~v~~~i~~l~~~-~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~ 235 (345)
T PRK14457 157 MGEPLLNIDEVLAAIRCLNQD-LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKN 235 (345)
T ss_pred cCccccCHHHHHHHHHHHhcc-cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccC
Confidence 899999999999999999876 56688999999999999999998765 33578999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 154 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~ 154 (205)
++++++++.+++|....+.+|++|||||||+||++|+++++++|+++++++||||||||+| ..+|.+|+++++++|+++
T Consensus 236 ~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIPynp~~-~~~~~~ps~e~i~~f~~~ 314 (345)
T PRK14457 236 YPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIPYNPID-EVEFQRPSPKRIQAFQRV 314 (345)
T ss_pred CCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEecCCCCC-CCCCCCCCHHHHHHHHHH
Confidence 9999999999999888899999999999999999999999999999998899999999997 889999999999999999
Q ss_pred HHhcCCceEEecccccccccccccccccc
Q 028700 155 LRGSYNIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 155 l~~~~Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
++ .+|+.+++|.++|+||.||||||++.
T Consensus 315 L~-~~Gi~vtvR~~~G~di~aaCGqL~~~ 342 (345)
T PRK14457 315 LE-QRGVAVSVRASRGLDANAACGQLRRN 342 (345)
T ss_pred HH-HCCCeEEEeCCCCCchhhccccchhc
Confidence 99 79999999999999999999999874
No 7
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.3e-44 Score=317.82 Aligned_cols=184 Identities=40% Similarity=0.696 Sum_probs=172.1
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++.++++.+++. |++++.+||+|||+|..+.+++++++. ++.|++|||++|+++|+++||.++++++++
T Consensus 166 mGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~i~~l~~~~-d~~LaiSLha~d~e~R~~lmPin~~~~l~~ 244 (372)
T PRK11194 166 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDELRDEIVPINKKYNIET 244 (372)
T ss_pred CCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchHHHHHHhcc-CeEEEeeccCCCHHHHHHhcCCcccccHHH
Confidence 899999999999999999965 888999999999999999999999876 467889999999999999999999999999
Q ss_pred HHHHHHHHHHhcC---CcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQ---QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 80 i~~~l~~~~~~~~---~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
+++.++.|....+ .+|++|||||||+||++|++++|++|+++++++||||||||++ +.+|++|+++++++|.++++
T Consensus 245 ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnLIPYN~~~-~~~~~~ps~e~v~~f~~~L~ 323 (372)
T PRK11194 245 FLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFP-GAPYGRSSNSRIDRFSKVLM 323 (372)
T ss_pred HHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEecCCCCC-CCCCCCCCHHHHHHHHHHHH
Confidence 9999999988774 7999999999999999999999999999998899999999997 78899999999999999999
Q ss_pred hcCCceEEecccccccccccccccccccccc
Q 028700 157 GSYNIRTTVRKQMGQDISGACGQLVVNLPDK 187 (205)
Q Consensus 157 ~~~Gi~~~i~~~~g~d~~~~Cgql~~~~~~~ 187 (205)
++|+.+++|.++|+||.||||||+.....+
T Consensus 324 -~~Gi~vtiR~~~G~di~aaCGQL~~~~~~~ 353 (372)
T PRK11194 324 -EYGFTVIVRKTRGDDIDAACGQLAGDVIDR 353 (372)
T ss_pred -HCCCeEEEecCCCCcchhcCcCcHhhhhhH
Confidence 799999999999999999999999877433
No 8
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=100.00 E-value=1.6e-43 Score=310.23 Aligned_cols=187 Identities=37% Similarity=0.674 Sum_probs=174.3
Q ss_pred CCccCCCHHHHHHHHHHhhc-CCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~-~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++.++++.+++ .|++++.+|++|+|||+.+.++++++..+++.|++|||++|++.|++++|.++.+++++
T Consensus 164 mGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ 243 (355)
T TIGR00048 164 MGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIET 243 (355)
T ss_pred CCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHH
Confidence 89999999999999999986 48888889999999999999999998665557889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++++++|.+..+.+|++||+||||+||+++++++|++|+++++++||+|||||++ ..+|++|+++++++|+++++ ++
T Consensus 244 ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~-~~~~~~ps~e~i~~f~~~L~-~~ 321 (355)
T TIGR00048 244 LLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFP-EADYERPSNEQIDRFAKTLM-SY 321 (355)
T ss_pred HHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCC-CCCCCCCCHHHHHHHHHHHH-HC
Confidence 99999989888899999999999999999999999999999998899999999996 78899999999999999999 79
Q ss_pred CceEEecccccccccccccccccccccccC
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNLPDKIS 189 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~~~~~~ 189 (205)
|+.+++|.++|+||.||||||++..-.+.+
T Consensus 322 gi~v~iR~~~G~di~aaCGqL~~~~~~~~~ 351 (355)
T TIGR00048 322 GFTVTIRKSRGDDIDAACGQLRAKDVIDRT 351 (355)
T ss_pred CCeEEEeCCCCcchhhcCCcchhhhccccc
Confidence 999999999999999999999987666644
No 9
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.4e-43 Score=309.12 Aligned_cols=184 Identities=38% Similarity=0.696 Sum_probs=173.1
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++.++++.+++. |++++.+|++|+|||+.+.+.++.+.++++.|++|||++|++.|++++|.+++++++.
T Consensus 168 mGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~ 247 (356)
T PRK14455 168 IGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEK 247 (356)
T ss_pred cccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHH
Confidence 899999999999999999985 9999999999999999999888888765567889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
|+++++.+.+..+.+|++|||||||+||++++++++++|+++++.+|+||||||++ ..+|.+|+.+++.+|++.+. ++
T Consensus 248 Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~-~~ky~~ps~e~l~~f~~~L~-~~ 325 (356)
T PRK14455 248 LMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVP-ERDYVRTPKEDIFAFEDTLK-KN 325 (356)
T ss_pred HHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCC-CCCCcCCCHHHHHHHHHHHH-HC
Confidence 99999989887788999999999999999999999999999998899999999997 78899999999999999999 79
Q ss_pred CceEEeccccccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNLPD 186 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~~~ 186 (205)
|+.+++|.++|+||.||||||++...+
T Consensus 326 gi~v~ir~~~g~di~aaCGqL~~~~~~ 352 (356)
T PRK14455 326 GVNCTIRREHGTDIDAACGQLRAKERK 352 (356)
T ss_pred CCcEEEeCCCCcchhhcCccchhhhhc
Confidence 999999999999999999999987653
No 10
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.7e-42 Score=300.84 Aligned_cols=182 Identities=38% Similarity=0.636 Sum_probs=171.3
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++.++++++.+++. |++++.++++|+|||..+.+++++.... +.|++|||+.|++.|++++|.++.+++++
T Consensus 157 mGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLha~~~e~R~~i~P~~~~~~l~~ 235 (345)
T PRK14466 157 MGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLHSPFPEQRRELMPAEKAFSIKE 235 (345)
T ss_pred eCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcCCCCHHHHHHhcCCccCCCHHH
Confidence 899999999999999999887 8999999999999999998888877553 68899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++++++|.+..+++|+++|+||+|+||++|++.+|++|++.++++||||||||.. +..|.+|+.+.+++|++.++ ++
T Consensus 236 l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np~~-~~~~~~~s~~~~~~F~~~L~-~~ 313 (345)
T PRK14466 236 IIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHAIP-GVDLEGSDMARMEAFRDYLT-SH 313 (345)
T ss_pred HHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCC-CCCCcCCCHHHHHHHHHHHH-HC
Confidence 99999999998999999999999999999999999999999999999999999985 67899999999999999999 79
Q ss_pred CceEEecccccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNLP 185 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~~ 185 (205)
|+.+++|.++|+||.||||||+....
T Consensus 314 gi~~tvR~s~G~dI~aACGQL~~~~~ 339 (345)
T PRK14466 314 GVFTTIRASRGEDIFAACGMLSTAKQ 339 (345)
T ss_pred CCcEEEeCCCCCchhhcCccchhhhh
Confidence 99999999999999999999987443
No 11
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.2e-42 Score=302.81 Aligned_cols=183 Identities=39% Similarity=0.633 Sum_probs=171.4
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++.++++.+++. |++++.++++|+|||+.+.+++|...++ +.|.+|||++|++.|++++|....+++++
T Consensus 164 mGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~~i~~L~~~~l-~~L~iSLha~~~e~r~~i~p~~~~~~l~~ 242 (354)
T PRK14460 164 MGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEKGLRELGESGL-AFLAVSLHAPNQELRERIMPKAARWPLDD 242 (354)
T ss_pred CCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChHHHHHHHhCCC-cEEEEeCCCCCHHHHHHhcCccccCCHHH
Confidence 899999999999999999986 9988999999999999889999888775 58899999999999999999988899999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
++++++.|....+.+|++|||||||+||++++++++++|+++++.+||||||||+. +..|++|+++++++|+++++ ++
T Consensus 243 ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~VnLIpyn~~~-g~~y~~p~~e~v~~f~~~l~-~~ 320 (354)
T PRK14460 243 LIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCKLNLIVYNPAE-GLPYSAPTEERILAFEKYLW-SK 320 (354)
T ss_pred HHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCC-CCCCCCCCHHHHHHHHHHHH-HC
Confidence 99999988887889999999999999999999999999999998899999999984 77899999999999999999 79
Q ss_pred CceEEeccccccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNLPD 186 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~~~ 186 (205)
|+.+++|.++|+||.||||||++....
T Consensus 321 Gi~vtir~~~G~di~aaCGqL~~~~~~ 347 (354)
T PRK14460 321 GITAIIRKSKGQDIKAACGQLKAEELG 347 (354)
T ss_pred CCeEEEeCCCCCchHhccccchhhhhh
Confidence 999999999999999999999985444
No 12
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=301.82 Aligned_cols=181 Identities=42% Similarity=0.722 Sum_probs=166.2
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|+ .+.++++.+++. +++++.+++||||+|+.|.++++.+..+.++|++|||++|++.|++++|+++.+++++
T Consensus 155 mGEPLln~-~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ 233 (347)
T PRK14453 155 MGEALANP-ELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNE 233 (347)
T ss_pred cCCccCCH-HHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHH
Confidence 89999995 589999999985 7888999999999999987777776554468999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC-----CceEEEeecCCCCCCC--CccCCcHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-----QVVVNLIPFNPIGSVS--QFRTSSDDKVSSFQ 152 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~-----~~~v~lip~~~~g~~~--~~~~~~~e~l~~~~ 152 (205)
+++++++|+...+.+|++|||||||+||++|+++++++|++++ ..+||||||||+| .. .|++|+.+++++|+
T Consensus 234 ll~~~~~~l~~~~~~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~-~~~~~~~~ps~e~v~~f~ 312 (347)
T PRK14453 234 VMKTLDEHIRHTGRKVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTD-KTPFKFQSSSAGQIKQFC 312 (347)
T ss_pred HHHHHHHHHHhcCCcEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCC-CCCccCCCCCHHHHHHHH
Confidence 9999999999888999999999999999999999999999987 4689999999997 43 48999999999999
Q ss_pred HHHHhcCCceEEeccccccccccccccccccc
Q 028700 153 KILRGSYNIRTTVRKQMGQDISGACGQLVVNL 184 (205)
Q Consensus 153 ~~l~~~~Gi~~~i~~~~g~d~~~~Cgql~~~~ 184 (205)
++++ ++|+.+++|.++|+||.||||||++..
T Consensus 313 ~~L~-~~Gi~vtiR~~~G~di~aaCGqL~~~~ 343 (347)
T PRK14453 313 STLK-SAGISVTVRTQFGSDISAACGQLYGNY 343 (347)
T ss_pred HHHH-HCCCcEEEeCCCCCchhhccccchhhh
Confidence 9999 799999999999999999999998854
No 13
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.8e-42 Score=298.42 Aligned_cols=180 Identities=36% Similarity=0.621 Sum_probs=169.3
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++.|.++++.+++. +++++.++++|+|||..+.++++.+....+.|.+|||+.|++.|.+++|..++++++.
T Consensus 161 mGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ 240 (342)
T PRK14465 161 MGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEE 240 (342)
T ss_pred CCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHH
Confidence 899999999999999999996 8889999999999999999999886443468999999999999999999988999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++++++|.+..+.+|++||+||||+||++|+++++++|+++++++||+||||+.+ ..|++|+++++++|+++++ ++
T Consensus 241 ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~~--~~~~~ps~e~i~~F~~~L~-~~ 317 (342)
T PRK14465 241 LLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTEF--FGWRRPTDDEVAEFIMLLE-PA 317 (342)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCCC--CCCCCCCHHHHHHHHHHHH-HC
Confidence 99999999988899999999999999999999999999999999999999999964 6799999999999999999 79
Q ss_pred CceEEecccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
|+.+++|.++|+||.||||||+..
T Consensus 318 Gi~v~~R~~~G~di~aACGqL~~~ 341 (342)
T PRK14465 318 GVPILNRRSPGKDIFGACGMLASK 341 (342)
T ss_pred CCeEEEeCCCCcChhhcCCccccC
Confidence 999999999999999999999874
No 14
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.1e-41 Score=299.18 Aligned_cols=181 Identities=35% Similarity=0.565 Sum_probs=170.6
Q ss_pred CCccCCCHHHHHHHHHHhhcC--CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCC-CCCH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL--PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR-AFPL 77 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~--~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~-~~~~ 77 (205)
|||||+|++.+.++++.+++. +++++.++++++|||+.+.+++|.+.++++.|++|||++++++|++++|.++ .+++
T Consensus 182 mGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l 261 (368)
T PRK14456 182 MGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPL 261 (368)
T ss_pred cCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCH
Confidence 899999999999999999984 5677889999999999999999999886568999999999999999999885 8899
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHh
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 157 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~ 157 (205)
++++++++.|.+..+.+|++|||||+|+||+++++++|++|++++.++|++||||+++ ..+|.+|+++.+++|++.++
T Consensus 262 ~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~-~~~~~~ps~e~i~~F~~~L~- 339 (368)
T PRK14456 262 DELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIV-NIKFEPVCSSTRERFRDRLL- 339 (368)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCC-CCCCCCCCHHHHHHHHHHHH-
Confidence 9999999988888899999999999999999999999999999998899999999997 78899999999999999999
Q ss_pred cCCceEEecccccccccccccccccc
Q 028700 158 SYNIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 158 ~~Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
++|+++++|.++|+||.||||||+..
T Consensus 340 ~~Gi~vtvR~~~G~di~aACGQL~~~ 365 (368)
T PRK14456 340 DAGLQVTVRKSYGTTINAACGQLAAR 365 (368)
T ss_pred HCCCcEEeeCCCCcchhhcCCcchhc
Confidence 79999999999999999999999875
No 15
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.1e-41 Score=297.36 Aligned_cols=181 Identities=39% Similarity=0.676 Sum_probs=169.1
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++.++++.+.+. +++++.+++++||||..+.++++.+.++++.|++|||++|+++|++++|..+.+++++
T Consensus 152 mGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ 231 (343)
T PRK14468 152 MGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAE 231 (343)
T ss_pred cCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHH
Confidence 899999999999999999554 8888889999999999899999998765557999999999999999999888899999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++++++|.+..+.+|++||+||||+||++|++++|++|++++.++||+|||||.+ ...|.+|+++++++|+++|+ ++
T Consensus 232 ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~~~VnLIPynp~~-~~~~~~ps~e~i~~f~~~L~-~~ 309 (343)
T PRK14468 232 IMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRGLVSHVNLIPFNPWE-GSPFQSSPRAQILAFADVLE-RR 309 (343)
T ss_pred HHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhcCCcEEEEEcCCCCC-CCCCCCCCHHHHHHHHHHHH-HC
Confidence 99999989888888999999999999999999999999999998899999999986 67899999999999999999 79
Q ss_pred CceEEecccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
|+.+++|.++|+||.||||||+..
T Consensus 310 Gi~vtiR~~~g~di~aaCGqL~~~ 333 (343)
T PRK14468 310 GVPVSVRWSRGRDVGAACGQLALK 333 (343)
T ss_pred CCeEEEeCCCCcchhhcCCccccC
Confidence 999999999999999999999874
No 16
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=4.6e-41 Score=293.96 Aligned_cols=180 Identities=39% Similarity=0.642 Sum_probs=169.6
Q ss_pred CCccCCCHHHHHHHHHHhhc-CCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTG-LPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~-~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|+++++++++.+++ .|++++.++++|+|||+.+.++++.... ++.|++|+|++|++.|++++|+++.+++++
T Consensus 157 ~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~-~~~LaiSL~a~~~e~r~~I~pink~~~l~~ 235 (349)
T PRK14463 157 MGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREV-TVNLAVSLNATTDEVRDRIMPVNRRYPLAE 235 (349)
T ss_pred CCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhcc-CeEEEEeCCCCCHHHHHHhcCcccCCCHHH
Confidence 89999999999999999987 5999999999999999999988888765 357889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++.+++|....+.+|++||+||+|+||+++++++|++|++.++++|||||||+++ +..|++|+++++++|+++++ ++
T Consensus 236 l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~-~~~~~~ps~e~i~~f~~~L~-~~ 313 (349)
T PRK14463 236 LLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHE-GCDFRSPTQEAIDRFHKYLL-DK 313 (349)
T ss_pred HHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCC-CCCCCCCCHHHHHHHHHHHH-HC
Confidence 99999988887889999999999999999999999999999998899999999997 77899999999999999999 79
Q ss_pred CceEEecccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
|+.+++|.++|+||.||||||+..
T Consensus 314 gi~v~vR~~~G~di~aaCGqL~~~ 337 (349)
T PRK14463 314 HVTVITRSSRGSDISAACGQLKGK 337 (349)
T ss_pred CceEEEeCCCCcchhhccCccccc
Confidence 999999999999999999999873
No 17
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=100.00 E-value=7.1e-41 Score=288.31 Aligned_cols=185 Identities=43% Similarity=0.712 Sum_probs=176.1
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++..+++.+.+. |++++.+++||+|+|+.|.+.++.+..+++.|++|||+.|++.|.+++|.++.++++.
T Consensus 161 MGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~ 240 (349)
T COG0820 161 MGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEE 240 (349)
T ss_pred CCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHH
Confidence 999999999999999999976 9999999999999999999999997655688999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
+++++++|....+.+|+++|.|++|+||+.|++++|+++++..+++||||||||.. +..|..|+.+++.+|.+.+. ++
T Consensus 241 l~~a~r~Y~~~t~~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~-~~~y~r~~~~~i~~F~~~L~-~~ 318 (349)
T COG0820 241 LLEAIRYYPEKSGRRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVP-GSDYERSSKERIRKFLKILK-KA 318 (349)
T ss_pred HHHHHHhhhhccCceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCCC-CCCccCCcHHHHHHHHHHHH-hC
Confidence 99999999998999999999999999999999999999999999999999999995 88899999999999999999 79
Q ss_pred CceEEecccccccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNLPDK 187 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~~~~ 187 (205)
|+.+++|.++|+||.||||||++.....
T Consensus 319 gv~~tvR~~~g~DIdaACGQL~~~~~~~ 346 (349)
T COG0820 319 GVLVTVRKTRGDDIDAACGQLRGKRIKR 346 (349)
T ss_pred CeeEEeccccccccccccchhhhhhchh
Confidence 9999999999999999999999877554
No 18
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=1.5e-40 Score=289.10 Aligned_cols=179 Identities=30% Similarity=0.510 Sum_probs=167.2
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++.+.++++.+++. |++++.++++|+|||..|.+++++..++.+.|.+||||.|++.|++++|++.++++++
T Consensus 153 mGEPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~ 232 (336)
T PRK14470 153 QGEPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDE 232 (336)
T ss_pred cCccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHH
Confidence 899999999999999999986 7888899999999999999999988764358999999999999999999988899999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHH--Hh
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL--RG 157 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l--~~ 157 (205)
+++++++|.+. +.+++++|++|||+||++|++++|++|++++.++||+|||||.+ . .|.+|+++++++|++++ +
T Consensus 233 il~ai~~~~~~-~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~-~-~~~~p~~~~i~~f~~~l~~~- 308 (336)
T PRK14470 233 LVEAIREHAAL-RGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT-G-RYRPPDEDEWNAFRDALARE- 308 (336)
T ss_pred HHHHHHHHHHh-CCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC-C-CccCCCHHHHHHHHHHHHHc-
Confidence 99999999886 88999999999999999999999999999998999999999975 4 89999999999999999 5
Q ss_pred cCCceEEecccccccccccccccccc
Q 028700 158 SYNIRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 158 ~~Gi~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
.+|+.+++|.++|+||.||||||++.
T Consensus 309 ~~g~~~~~R~~~G~di~aaCGqL~~~ 334 (336)
T PRK14470 309 LPGTPVVRRYSGGQDEHAACGMLASR 334 (336)
T ss_pred cCCeEEEEECCCCCChHhccCccccc
Confidence 68999999999999999999999873
No 19
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=8.5e-40 Score=285.92 Aligned_cols=182 Identities=38% Similarity=0.637 Sum_probs=168.6
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++.++++.+++. +.+++.++++++|||..+.+++|.+.++++.|++|||+++++.|++++|.++.+++++
T Consensus 157 mGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~ 236 (343)
T PRK14469 157 MGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEE 236 (343)
T ss_pred cChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHH
Confidence 899999999999999999875 5666778999999999889999998876557999999999999999999888899999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~ 159 (205)
++++++++.+..+.+|+++||+|||+||++++++++++|+++++++|++|||||+. . .+++|+++++++|++.++ ++
T Consensus 237 Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~VnLIpynp~~-~-~~~~ps~e~l~~f~~~l~-~~ 313 (343)
T PRK14469 237 IINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKGLKVFVNLIPVNPTV-P-GLEKPSRERIERFKEILL-KN 313 (343)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhccCcEEEEEecCCCC-c-cCCCCCHHHHHHHHHHHH-HC
Confidence 99999988887788999999999999999999999999999998899999999985 3 689999999999999999 79
Q ss_pred CceEEecccccccccccccccccccc
Q 028700 160 NIRTTVRKQMGQDISGACGQLVVNLP 185 (205)
Q Consensus 160 Gi~~~i~~~~g~d~~~~Cgql~~~~~ 185 (205)
|+.+++|.++|+||.||||||+++..
T Consensus 314 gi~vtvr~~~g~di~aaCGqL~~~~~ 339 (343)
T PRK14469 314 GIEAEIRREKGSDIEAACGQLRRRNL 339 (343)
T ss_pred CCeEEEeCCCCcchhhcCccchhhhh
Confidence 99999999999999999999998654
No 20
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=100.00 E-value=2.9e-39 Score=280.81 Aligned_cols=180 Identities=28% Similarity=0.503 Sum_probs=168.2
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 80 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i 80 (205)
|||||+|++.++++++.+++. .+++.++++|||+|..+.++++....+.+.|.+|||+.+++.|++++|.+++++++++
T Consensus 150 mGEPl~N~d~vl~ai~~l~~~-~~i~~r~itiST~G~~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el 228 (344)
T PRK14464 150 MGEPAHNLDNVLEAIDLLGTE-GGIGHKNLVFSTVGDPRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEEL 228 (344)
T ss_pred cCcccCCHHHHHHHHHHhhch-hcCCCceEEEecccCchHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHH
Confidence 899999999999999999876 3568899999999999999998875433578899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCC
Q 028700 81 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 160 (205)
Q Consensus 81 ~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~G 160 (205)
++++++|.+..|.+|+++|+||+|+||++|++++|+++++++.++||+|||||+. +..|.+|+.+++++|++.++ .+|
T Consensus 229 ~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~-g~~~~rp~~~~i~~f~~~L~-~~g 306 (344)
T PRK14464 229 VELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVD-GDAYRRPSGERIVAMARYLH-RRG 306 (344)
T ss_pred HHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccC-CCCccCCCHHHHHHHHHHHH-HCC
Confidence 9999999988899999999999999999999999999999999999999999996 78899999999999999999 799
Q ss_pred ceEEecccccccccccccccccc
Q 028700 161 IRTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 161 i~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
+.+++|.++|+||.||||||+..
T Consensus 307 i~~tiR~~~G~di~aACGqL~~~ 329 (344)
T PRK14464 307 VLTKVRNSAGQDVDGGCGQLRAR 329 (344)
T ss_pred ceEEEECCCCCchhhcCcchhhh
Confidence 99999999999999999999874
No 21
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=100.00 E-value=1.2e-31 Score=220.11 Aligned_cols=151 Identities=13% Similarity=0.196 Sum_probs=134.1
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH--HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~--~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||++|++|+.++++.+|+.|+ |++++|||+.+ .+++++++. | .+++|+|++|++.|+++||.+ ++.
T Consensus 47 GEPllq~~fl~~l~~~~k~~gi-----~~~leTnG~~~~~~~~~l~~~~-D-~~l~DiK~~d~~~~~~~tG~~----~~~ 115 (213)
T PRK10076 47 GEVLMQAEFATRFLQRLRLWGV-----SCAIETAGDAPASKLLPLAKLC-D-EVLFDLKIMDATQARDVVKMN----LPR 115 (213)
T ss_pred chHHcCHHHHHHHHHHHHHcCC-----CEEEECCCCCCHHHHHHHHHhc-C-EEEEeeccCCHHHHHHHHCCC----HHH
Confidence 9999999999999999999988 99999999875 588898886 3 788999999999999999875 579
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc------------cCCcHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF------------RTSSDD 146 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~------------~~~~~e 146 (205)
++++++.+. +.+..+++|+|+|||+||++|+++++++|+++++. .++|+|||++| ..|| ++|+.+
T Consensus 116 il~nl~~l~-~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llpyh~~g-~~Ky~~lg~~y~~~~~~~~~~~ 193 (213)
T PRK10076 116 VLENLRLLV-SEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLPFHQYG-EPKYRLLGKTWSMKEVPAPSSA 193 (213)
T ss_pred HHHHHHHHH-hCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecCCccc-hhHHHHcCCcCccCCCCCcCHH
Confidence 999998554 47889999999999999999999999999998864 79999999998 4332 468899
Q ss_pred HHHHHHHHHHhcCCceEEec
Q 028700 147 KVSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 147 ~l~~~~~~l~~~~Gi~~~i~ 166 (205)
.+++++++++ +.|+++.++
T Consensus 194 ~l~~~~~~~~-~~gl~~~i~ 212 (213)
T PRK10076 194 DVATMREMAE-RAGFQVTVG 212 (213)
T ss_pred HHHHHHHHHH-HcCCeEEeC
Confidence 9999999999 799998763
No 22
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.93 E-value=9.7e-25 Score=182.46 Aligned_cols=150 Identities=17% Similarity=0.344 Sum_probs=127.9
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
.|||++|++++.++++.+++.|+ +++++|||+. +.++++++.. | .+++|+|+++++.|++++|..
T Consensus 78 GGEPll~~~~~~~l~~~~k~~g~-----~i~l~TNG~~~~~~~~~~~ll~~~-d-~v~islk~~~~e~~~~~~g~~---- 146 (246)
T PRK11145 78 GGEAILQAEFVRDWFRACKKEGI-----HTCLDTNGFVRRYDPVIDELLDVT-D-LVMLDLKQMNDEIHQNLVGVS---- 146 (246)
T ss_pred CccHhcCHHHHHHHHHHHHHcCC-----CEEEECCCCCCcchHHHHHHHHhC-C-EEEECCCcCChhhcccccCCC----
Confidence 49999999999999999998887 7999999985 3567776654 3 688999999999999999864
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--ceEEEeecCCCCCCC------------CccC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVS------------QFRT 142 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~~v~lip~~~~g~~~------------~~~~ 142 (205)
.+.++++++.+.+ .+.++++|++++||+||++++++++++|++.++ ..++++|||++| .. .+++
T Consensus 147 ~~~~l~~i~~l~~-~g~~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 224 (246)
T PRK11145 147 NHRTLEFARYLAK-RNQKTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLPYHELG-KHKWEAMGEEYKLDGVKP 224 (246)
T ss_pred hHHHHHHHHHHHh-CCCcEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEecCCccc-hhHHHHcCCcccccCCCC
Confidence 3578888875544 678999999999999999999999999999875 479999999987 33 3468
Q ss_pred CcHHHHHHHHHHHHhcCCceEE
Q 028700 143 SSDDKVSSFQKILRGSYNIRTT 164 (205)
Q Consensus 143 ~~~e~l~~~~~~l~~~~Gi~~~ 164 (205)
|+.+++++++++++ ++|++++
T Consensus 225 ~~~e~l~~~~~~~~-~~g~~~~ 245 (246)
T PRK11145 225 PSKETMERVKGILE-QYGHKVM 245 (246)
T ss_pred CCHHHHHHHHHHHH-HcCCccc
Confidence 99999999999998 7888763
No 23
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.92 E-value=2.1e-24 Score=194.37 Aligned_cols=149 Identities=17% Similarity=0.332 Sum_probs=122.7
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCC-------
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA------- 71 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~------- 71 (205)
|||||+|++++++.++.+++. ++..++||+|||+. +.+++|+++++| .+++|||++|++.|+++++.
T Consensus 87 ~GEPLl~~e~~~~~l~~~~~~---~~~i~i~lsTNG~~l~e~i~~L~~~gvd-~V~islka~d~e~~~~Iy~~v~~~g~~ 162 (442)
T TIGR01290 87 PGDPLANIGKTFQTLELVARQ---LPDVKLCLSTNGLMLPEHVDRLVDLGVG-HVTITINAIDPAVGEKIYPWVWYEGER 162 (442)
T ss_pred CCCcccCccccHHHHHHHHHh---cCCCeEEEECCCCCCHHHHHHHHHCCCC-eEEEeccCCCHHHHhhcchhhcccccc
Confidence 699999999999999999987 12238999999985 578999998775 89999999999999887542
Q ss_pred ----CCCC-CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCC-CCC-----
Q 028700 72 ----ARAF-PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGS-VSQ----- 139 (205)
Q Consensus 72 ----~~~~-~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~-~~~----- 139 (205)
.+.. .+++++++++.+.+ .|..|++|++||||+|| +++.++++|++++++ .++++|||+.+. +..
T Consensus 163 ~tG~~~~~il~e~~l~~l~~l~~-~G~~v~v~~vlIpGiND--~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~ 239 (442)
T TIGR01290 163 YTGREAADLLIERQLEGLEKLTE-RGILVKVNSVLIPGIND--EHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNG 239 (442)
T ss_pred ccCcchHHHHHHHHHHHHHHHHh-CCCeEEEEEEeeCCcCH--HHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCC
Confidence 1111 25667899986554 68899999999999999 589999999999985 689999998741 222
Q ss_pred ccCCcHHHHHHHHHHHH
Q 028700 140 FRTSSDDKVSSFQKILR 156 (205)
Q Consensus 140 ~~~~~~e~l~~~~~~l~ 156 (205)
+++|+.++++++++.++
T Consensus 240 ~~~ps~e~l~~~~~~~~ 256 (442)
T TIGR01290 240 QREPDPDELAALRDRLE 256 (442)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 37899999999999987
No 24
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.1e-23 Score=174.39 Aligned_cols=147 Identities=16% Similarity=0.277 Sum_probs=126.5
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH--HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~--~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||++|++|+.++++.+|+.|+ +++++|||+.+ ..+++.+.. | .+++|||+.+++.|+++++..+ +.
T Consensus 92 GEP~~q~e~~~~~~~~ake~Gl-----~~~l~TnG~~~~~~~~~l~~~~-D-~v~~DlK~~~~~~y~~~tg~~~----~~ 160 (260)
T COG1180 92 GEPTLQAEFALDLLRAAKERGL-----HVALDTNGFLPPEALEELLPLL-D-AVLLDLKAFDDELYRKLTGADN----EP 160 (260)
T ss_pred CcchhhHHHHHHHHHHHHHCCC-----cEEEEcCCCCCHHHHHHHHhhc-C-eEEEeeccCChHHHHHHhCCCc----HH
Confidence 9999999999999999999988 89999999984 467888876 3 7899999999999999998764 78
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--ceEEEeecCCCCCCCCccC-CcHHHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQFRT-SSDDKVSSFQKILR 156 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~~v~lip~~~~g~~~~~~~-~~~e~l~~~~~~l~ 156 (205)
++++++.+.+ .+..|++|+++|||+||++++++++++|++++. ..++++||||.+ ..++.+ +..++++++.+...
T Consensus 161 vl~~~~~l~~-~g~~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~-~~~~~p~~~~~~le~~~~~a~ 238 (260)
T COG1180 161 VLENLELLAD-LGVHVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDY-KLKDLPPTPVETLEEAKKLAK 238 (260)
T ss_pred HHHHHHHHHc-CCCeEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCc-cccccCCCcHHHHHHhHhhhH
Confidence 9999985554 889999999999999999999999999999874 479999999998 666754 45677777777766
Q ss_pred hcCCce
Q 028700 157 GSYNIR 162 (205)
Q Consensus 157 ~~~Gi~ 162 (205)
..|..
T Consensus 239 -~~~~~ 243 (260)
T COG1180 239 -EEGLK 243 (260)
T ss_pred -HHHHH
Confidence 45543
No 25
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.88 E-value=5.9e-22 Score=169.75 Aligned_cols=145 Identities=16% Similarity=0.334 Sum_probs=125.0
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||+|++++.++++.+++.|+ +++++|||+. +.+.++++.. | .+.+|+|+.+++.|++++|. +++.
T Consensus 134 GEPll~~~~l~~l~~~~k~~g~-----~~~i~TnG~~~~~~~~~ll~~~-d-~~~isl~~~~~~~~~~~~g~----~~~~ 202 (295)
T TIGR02494 134 GEPLLQPEFALALLQACHERGI-----HTAVETSGFTPWETIEKVLPYV-D-LFLFDIKHLDDERHKEVTGV----DNEP 202 (295)
T ss_pred cchhchHHHHHHHHHHHHHcCC-----cEeeeCCCCCCHHHHHHHHhhC-C-EEEEeeccCChHHHHHHhCC----ChHH
Confidence 8999999999999999998887 7999999986 3677777764 3 57799999999999999875 3678
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--c-eEEEeecCCCCCCCCc------------cCCc
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIGSVSQF------------RTSS 144 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~-~v~lip~~~~g~~~~~------------~~~~ 144 (205)
++++++.+.+ .+.++++|+++++|+||+.++++++++|+++++ + .++++|||++| ..+| +.|+
T Consensus 203 vl~~i~~l~~-~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~~~g-~~~~~~~~~~~~~~~~~~p~ 280 (295)
T TIGR02494 203 ILENLEALAA-AGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYHRLG-ENKYRQLGREYPDSEIPDPA 280 (295)
T ss_pred HHHHHHHHHh-CCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCCchh-HHHHHHhCCCCccCCCCCCC
Confidence 9999986655 678999999999999999999999999999986 3 89999999998 4333 4699
Q ss_pred HHHHHHHHHHHHhcCC
Q 028700 145 DDKVSSFQKILRGSYN 160 (205)
Q Consensus 145 ~e~l~~~~~~l~~~~G 160 (205)
+++++++++.++ +.|
T Consensus 281 ~~~~~~~~~~~~-~~g 295 (295)
T TIGR02494 281 EEQLLELKEIFE-SKG 295 (295)
T ss_pred HHHHHHHHHHHH-hcC
Confidence 999999999887 554
No 26
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.87 E-value=2.7e-21 Score=166.26 Aligned_cols=174 Identities=16% Similarity=0.270 Sum_probs=131.5
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||++ +++.++++.+++.++ ..++++|||+. ...++|.+++++ +|++|||++|+++|+++|+.. .+++
T Consensus 68 GEPllR-~dl~eIi~~l~~~~~----~~islTTNG~~L~~~a~~Lk~AGl~-rVNVSLDsld~e~f~~IT~~~---~~~~ 138 (322)
T COG2896 68 GEPLLR-KDLDEIIARLARLGI----RDLSLTTNGVLLARRAADLKEAGLD-RVNVSLDSLDPEKFRKITGRD---RLDR 138 (322)
T ss_pred CCchhh-cCHHHHHHHHhhccc----ceEEEecchhhHHHHHHHHHHcCCc-EEEeecccCCHHHHHHHhCCC---cHHH
Confidence 999999 558899999987533 48999999986 478999999985 999999999999999999654 3999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCcc----CCcHHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR----TSSDDKVSSFQKIL 155 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~----~~~~e~l~~~~~~l 155 (205)
++++++++.+..-.+|+||++|++|+||. ++..+++|+++.+..+.||.|||+|....|. -+..+-.+.+.+.+
T Consensus 139 Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~--ei~~l~e~~~~~~~~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~ 216 (322)
T COG2896 139 VLEGIDAAVEAGLTPVKLNTVLMKGVNDD--EIEDLLEFAKERGAQLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERA 216 (322)
T ss_pred HHHHHHHHHHcCCCceEEEEEEecCCCHH--HHHHHHHHHhhcCCceEEEEEeecCcccchhhhccccHHHHHHHHHhhc
Confidence 99999988875556899999999999998 8999999999999999999999998422221 22222222222211
Q ss_pred H------hcCCc----------eEEeccccccccccccccccccccc
Q 028700 156 R------GSYNI----------RTTVRKQMGQDISGACGQLVVNLPD 186 (205)
Q Consensus 156 ~------~~~Gi----------~~~i~~~~g~d~~~~Cgql~~~~~~ 186 (205)
. ..++. .+.+-.+..+.+|++|-.+|.++.-
T Consensus 217 ~~~~~~~~~~~~a~~~~~~~~~~ig~I~p~~~~FC~~CnR~Rlt~dG 263 (322)
T COG2896 217 TLLPVRKRLHGRAKYFIHPDGGEIGFIAPVSNPFCATCNRLRLTADG 263 (322)
T ss_pred cccccccccCCCceEEEeCCCcEEEEEcCCCchhhhhcceeeeccCC
Confidence 0 00110 2223345667899999998877643
No 27
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.87 E-value=1.4e-20 Score=163.44 Aligned_cols=151 Identities=22% Similarity=0.281 Sum_probs=125.3
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
+||||+++ ++.++++.+++.|+ +++|+|||..+ .++++ ...+ +.+.+|||+.|++.|++++++.....+++
T Consensus 138 ~GEPlL~p-~l~eli~~~k~~Gi-----~~~L~TNG~~~e~l~~L-~~~~-d~i~VSLda~~~e~~~~i~~~~~~~~~~~ 209 (322)
T PRK13762 138 SGEPTLYP-YLPELIEEFHKRGF-----TTFLVTNGTRPDVLEKL-EEEP-TQLYVSLDAPDEETYKKINRPVIPDAWER 209 (322)
T ss_pred Cccccchh-hHHHHHHHHHHcCC-----CEEEECCCCCHHHHHHH-HhcC-CEEEEEccCCCHHHHHHHhCCCCCCcHHH
Confidence 49999995 79999999999887 89999999876 56777 4455 38999999999999999997634568999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc-----cCCcHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF-----RTSSDDKVSSFQK 153 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~-----~~~~~e~l~~~~~ 153 (205)
++++++.+. +.+.++++|++++||+||++++ ++++|++..++ .|+++|||++| ..++ ..|+.+++.+|.+
T Consensus 210 vl~~L~~l~-~~~~~~~ir~tlv~g~Nd~e~~--~~a~l~~~~~~~~Iel~~y~~~G-~~k~~l~~~~~p~~eev~~~~~ 285 (322)
T PRK13762 210 ILETLELLP-SKKTRTVIRITLVKGYNMHDPE--GFAKLIERANPDFVEVKAYMHVG-YSRNRLTRDNMPSHEEVREFAK 285 (322)
T ss_pred HHHHHHHHH-hCCCCEEEEEEEECCcCccHHH--HHHHHHHHcCCCEEEEECCeECC-CccccccccCCcCHHHHHHHHH
Confidence 999998654 4688999999999999999664 99999998874 79999999998 4433 3588999999999
Q ss_pred HHHhcCCceE
Q 028700 154 ILRGSYNIRT 163 (205)
Q Consensus 154 ~l~~~~Gi~~ 163 (205)
.+.+..|..+
T Consensus 286 ~l~~~~~~~i 295 (322)
T PRK13762 286 ELAEYTGYEI 295 (322)
T ss_pred HHHHhcCCeE
Confidence 9883335543
No 28
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.83 E-value=2.1e-19 Score=159.96 Aligned_cols=149 Identities=15% Similarity=0.263 Sum_probs=120.7
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEE-cCCc--H--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVS-TVGI--V--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~-T~G~--~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|||++|++++.++++.+++.++ |+++. |||. . ..+++++++++| .+++|+|++|++.|++++|..+.
T Consensus 82 GGepl~~~~l~eLl~~lk~~gi-----~taI~~TnG~~l~~~e~~~~L~~~gld-~v~iSvka~dpe~h~kl~G~~~a-- 153 (404)
T TIGR03278 82 GGDVSCYPELEELTKGLSDLGL-----PIHLGYTSGKGFDDPEIAEFLIDNGVR-EVSFTVFATDPELRREWMKDPTP-- 153 (404)
T ss_pred CcccccCHHHHHHHHHHHhCCC-----CEEEeCCCCcccCCHHHHHHHHHcCCC-EEEEecccCCHHHHHHHhCCCCH--
Confidence 5555577999999999999887 89997 9974 2 368999998765 79999999999999999987542
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCC----------CCccCCcH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV----------SQFRTSSD 145 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~----------~~~~~~~~ 145 (205)
+.++++++.+.+ +..+++++|+|||+||+++. .++++|++++++ .|.++|||++|.. ..+.+++.
T Consensus 154 -~~ILe~L~~L~e--~~~v~~~ivlIPGiND~eel-~~ti~~L~~lg~~~V~L~~y~~~g~~ky~lg~~~~~~~~~~~~~ 229 (404)
T TIGR03278 154 -EASLQCLRRFCE--SCEVHAASVIIPGVNDGDVL-WKTCADLESWGAKALILMRFANTEEQGLILGNAPIIPGIKPHTV 229 (404)
T ss_pred -HHHHHHHHHHHh--cCCEEEEEEEeCCccCcHHH-HHHHHHHHHCCCCEEEEEecccccccccccCCcCcccCCCCCCH
Confidence 789999997765 36899999999999998775 599999999985 7999999987621 11456788
Q ss_pred HHHHHH-HHHHHhcCCceE
Q 028700 146 DKVSSF-QKILRGSYNIRT 163 (205)
Q Consensus 146 e~l~~~-~~~l~~~~Gi~~ 163 (205)
+++.++ .++.+ ++++++
T Consensus 230 ~e~~~~v~~~~~-~~~i~~ 247 (404)
T TIGR03278 230 SEFKNIVRETHK-EFPIRV 247 (404)
T ss_pred HHHHHHHHHHHH-HhCCcc
Confidence 888887 66666 677654
No 29
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.82 E-value=1.1e-18 Score=144.75 Aligned_cols=143 Identities=17% Similarity=0.335 Sum_probs=121.5
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCc----HHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI----VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~----~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
||||++++++.++++.+++.|+ .++++|||+ .+.+.++++.. + .+.+|+++.+++.|+++.+. .+
T Consensus 74 GEPll~~~~~~~li~~~~~~g~-----~~~i~TNG~~~~~~~~~~~ll~~~-d-~v~isl~~~~~~~~~~~~g~----~~ 142 (235)
T TIGR02493 74 GEPLLQPEFLSELFKACKELGI-----HTCLDTSGFLGGCTEAADELLEYT-D-LVLLDIKHFNPEKYKKLTGV----SL 142 (235)
T ss_pred cccccCHHHHHHHHHHHHHCCC-----CEEEEcCCCCCccHHHHHHHHHhC-C-EEEEeCCCCCHHHHHHHHCC----Cc
Confidence 8999999999999999998876 799999995 34577777754 3 68899999999999999865 46
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--ceEEEeecCCCCC-----------CCCccCCc
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGS-----------VSQFRTSS 144 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~~v~lip~~~~g~-----------~~~~~~~~ 144 (205)
++++++++.+. +.+.++.++++++||+||+.++++++++|+++++ ..++++|||++|- ...+++|+
T Consensus 143 ~~v~~~i~~l~-~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~ 221 (235)
T TIGR02493 143 QPTLDFAKYLA-KRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQLGVYKWEALGIEYPLEGVKPPN 221 (235)
T ss_pred HHHHHHHHHHH-hCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcccHHHHHHcCCcCccCCCCCCC
Confidence 78999998554 4778899999999999999999999999999987 3799999999761 12357899
Q ss_pred HHHHHHHHHHHH
Q 028700 145 DDKVSSFQKILR 156 (205)
Q Consensus 145 ~e~l~~~~~~l~ 156 (205)
.+++++++++++
T Consensus 222 ~~~~~~~~~~~~ 233 (235)
T TIGR02493 222 KEQLERAAEIFK 233 (235)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 30
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.80 E-value=2.1e-18 Score=150.03 Aligned_cols=172 Identities=15% Similarity=0.233 Sum_probs=130.7
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||++.+ +.++++.+++.. +..+++++|||.. +.++++.+.+++ .+.+|+++++++.|+++++. ..+++
T Consensus 74 GEPll~~~-l~~li~~i~~~~---~~~~i~itTNG~ll~~~~~~L~~agl~-~i~ISlds~~~e~~~~i~~~---~~~~~ 145 (331)
T PRK00164 74 GEPLLRKD-LEDIIAALAALP---GIRDLALTTNGYLLARRAAALKDAGLD-RVNVSLDSLDPERFKAITGR---DRLDQ 145 (331)
T ss_pred CCCcCccC-HHHHHHHHHhcC---CCceEEEEcCchhHHHHHHHHHHcCCC-EEEEEeccCCHHHhccCCCC---CCHHH
Confidence 99999955 789999998752 2247999999975 467888888874 89999999999999998765 47899
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhc
Q 028700 80 LMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGS 158 (205)
Q Consensus 80 i~~~l~~~~~~~~~-~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~ 158 (205)
++++++.+.+ .+. +|++++++++|+||. ++.++++|++++++.+++++|+|++....|........+++.+.++ +
T Consensus 146 vl~~i~~~~~-~g~~~v~i~~vv~~g~n~~--ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~-~ 221 (331)
T PRK00164 146 VLAGIDAALA-AGLTPVKVNAVLMKGVNDD--EIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLA-E 221 (331)
T ss_pred HHHHHHHHHH-CCCCcEEEEEEEECCCCHH--HHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHH-h
Confidence 9999997766 565 899999999999994 8999999999999899999999998443454333344455555555 3
Q ss_pred CCceEE-------------ec---------ccccccccccccccccccc
Q 028700 159 YNIRTT-------------VR---------KQMGQDISGACGQLVVNLP 185 (205)
Q Consensus 159 ~Gi~~~-------------i~---------~~~g~d~~~~Cgql~~~~~ 185 (205)
.|+... +. .+....+|++|..+|.++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~i~~~s~~fC~~c~r~r~t~d 270 (331)
T PRK00164 222 RGWTLQPRARSGGPAQYFRHPDYGGEIGLIAPVTHDFCASCNRLRLTAD 270 (331)
T ss_pred ccCcccccCCCCCCCEEEEECCCCeEEEEEeCCCCcccccCCeEEEcCC
Confidence 422111 11 1223569999999987765
No 31
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.77 E-value=1.5e-17 Score=147.23 Aligned_cols=173 Identities=13% Similarity=0.254 Sum_probs=128.4
Q ss_pred CccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
|||+++++ +.++++.+++. |+ .+++++|||+. +.++++.+.+++ .+++|||+++++.|+++++.. .++
T Consensus 115 GEPllr~d-l~eli~~l~~~~gi----~~i~itTNG~lL~~~~~~L~~aGld-~VnISLDsl~~e~~~~itr~~---~~~ 185 (373)
T PLN02951 115 GEPTLRKD-IEDICLQLSSLKGL----KTLAMTTNGITLSRKLPRLKEAGLT-SLNISLDTLVPAKFEFLTRRK---GHD 185 (373)
T ss_pred CCCcchhh-HHHHHHHHHhcCCC----ceEEEeeCcchHHHHHHHHHhCCCC-eEEEeeccCCHHHHHHHhcCC---CHH
Confidence 89999976 88899999875 54 25999999975 468888888874 899999999999999998753 368
Q ss_pred HHHHHHHHHHHhcC-CcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccC----CcHHHHHHHHH
Q 028700 79 KLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT----SSDDKVSSFQK 153 (205)
Q Consensus 79 ~i~~~l~~~~~~~~-~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~----~~~e~l~~~~~ 153 (205)
.++++++.+.+ .| .+|++++++++|+||+ ++.++++|+++.++.+++++|+|+| ...|.. +..+-++.+.+
T Consensus 186 ~vl~~I~~a~~-~G~~~vkin~vv~~g~N~~--Ei~~li~~a~~~gi~vr~ie~mP~~-~~~~~~~~~~~~~ei~~~l~~ 261 (373)
T PLN02951 186 RVLESIDTAIE-LGYNPVKVNCVVMRGFNDD--EICDFVELTRDKPINVRFIEFMPFD-GNVWNVKKLVPYAEMMDRIEQ 261 (373)
T ss_pred HHHHHHHHHHH-cCCCcEEEEEEecCCCCHH--HHHHHHHHHHhCCCeEEEEEcccCC-CCccccccCCCHHHHHHHHHH
Confidence 99999997766 45 4799999999999996 7999999999998899999999997 444322 22333333333
Q ss_pred HH---Hh--c--CCceE--Eec---------ccccccccccccccccccccc
Q 028700 154 IL---RG--S--YNIRT--TVR---------KQMGQDISGACGQLVVNLPDK 187 (205)
Q Consensus 154 ~l---~~--~--~Gi~~--~i~---------~~~g~d~~~~Cgql~~~~~~~ 187 (205)
.+ .. . .|... .+. .+..+.+|++|-.+|.++.-+
T Consensus 262 ~~~~~~~~~~~~~~~a~~y~~~~~~g~ig~I~~~s~~FC~~CnRlRltadG~ 313 (373)
T PLN02951 262 RFPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGN 313 (373)
T ss_pred hcCcccccCCCCCCCceEEEECCCCeEEEEEcCCcccccccCCeEEEccCCc
Confidence 21 10 0 11111 121 123368999999999877544
No 32
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.75 E-value=7.5e-17 Score=140.48 Aligned_cols=173 Identities=17% Similarity=0.236 Sum_probs=127.6
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||++.+ +.++++.+++.+. ...++++|||.. +.+++|.+.+++ .+++||++.+++.|+++++. ..+++
T Consensus 70 GEPllr~d-l~~li~~i~~~~~---l~~i~itTNG~ll~~~~~~L~~aGl~-~v~ISlDs~~~e~~~~i~~~---g~~~~ 141 (329)
T PRK13361 70 GEPLVRRG-CDQLVARLGKLPG---LEELSLTTNGSRLARFAAELADAGLK-RLNISLDTLRPELFAALTRN---GRLER 141 (329)
T ss_pred cCCCcccc-HHHHHHHHHhCCC---CceEEEEeChhHHHHHHHHHHHcCCC-eEEEEeccCCHHHhhhhcCC---CCHHH
Confidence 99999965 7799999987521 126999999975 467888888874 89999999999999999864 36999
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCc---cCCcHHHH-HHHHHH
Q 028700 80 LMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF---RTSSDDKV-SSFQKI 154 (205)
Q Consensus 80 i~~~l~~~~~~~~~-~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~---~~~~~e~l-~~~~~~ 154 (205)
++++++.+.+ .|. +|++++++++|.|++ ++.++++|++++++.+.+++|+|+|....+ ...+.+++ +.+.+.
T Consensus 142 vl~~i~~~~~-~Gi~~v~in~v~~~g~N~~--ei~~~~~~~~~~gi~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~ 218 (329)
T PRK13361 142 VIAGIDAAKA-AGFERIKLNAVILRGQNDD--EVLDLVEFCRERGLDIAFIEEMPLGEIDERRRARHCSSDEVRAIIETR 218 (329)
T ss_pred HHHHHHHHHH-cCCCceEEEEEEECCCCHH--HHHHHHHHHHhcCCeEEEEecccCCCccchhhccCcCHHHHHHHHHHh
Confidence 9999986655 565 899999999999974 899999999999988889999999843333 22344444 333332
Q ss_pred HH---h--c-CCce--EEec---------ccccccccccccccccccc
Q 028700 155 LR---G--S-YNIR--TTVR---------KQMGQDISGACGQLVVNLP 185 (205)
Q Consensus 155 l~---~--~-~Gi~--~~i~---------~~~g~d~~~~Cgql~~~~~ 185 (205)
+. . . .|.. ..+. .+..+.+|++|-.+|.++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~I~~~s~~fC~~Cnr~rlt~~ 266 (329)
T PRK13361 219 YPLTPSNKRTGGPARYYTMADSPIHIGFISPHSHNFCHECNRVRVTAE 266 (329)
T ss_pred CCcccCCCCCCCCCeEEEECCCCeEEEEEcCCCccccccCCeEEEccC
Confidence 11 0 0 1111 1121 2445689999999998775
No 33
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.74 E-value=1.2e-16 Score=137.34 Aligned_cols=123 Identities=20% Similarity=0.332 Sum_probs=104.5
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||++++ +.++++.+++.|+ .+++++|||.. +.+.++...+.+ .+++|+++.+++.|+++++ ..++++
T Consensus 65 GEPll~~~-l~~iv~~l~~~g~----~~v~i~TNG~ll~~~~~~l~~~g~~-~v~iSld~~~~~~~~~i~~---~~~~~~ 135 (302)
T TIGR02668 65 GEPLLRKD-LIEIIRRIKDYGI----KDVSMTTNGILLEKLAKKLKEAGLD-RVNVSLDTLDPEKYKKITG---RGALDR 135 (302)
T ss_pred cccccccC-HHHHHHHHHhCCC----ceEEEEcCchHHHHHHHHHHHCCCC-EEEEEecCCCHHHhhhccC---CCcHHH
Confidence 99999976 5689999987644 37999999975 357778777764 8999999999999999886 347999
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCC
Q 028700 80 LMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS 136 (205)
Q Consensus 80 i~~~l~~~~~~~~~-~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~ 136 (205)
++++++.+.+ .|. ++++++++++|.|++ ++.++++|+++++..+++++|+|.|.
T Consensus 136 vl~~i~~~~~-~G~~~v~i~~v~~~g~n~~--ei~~~~~~~~~~g~~~~~ie~~p~~~ 190 (302)
T TIGR02668 136 VIEGIESAVD-AGLTPVKLNMVVLKGINDN--EIPDMVEFAAEGGAILQLIELMPPGE 190 (302)
T ss_pred HHHHHHHHHH-cCCCcEEEEEEEeCCCCHH--HHHHHHHHHHhcCCEEEEEEEeECCC
Confidence 9999997766 455 599999999999886 79999999999998899999999873
No 34
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.72 E-value=3.6e-16 Score=136.29 Aligned_cols=128 Identities=21% Similarity=0.328 Sum_probs=106.2
Q ss_pred CccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
||||++++ +.++++.+++. ++ ..++++|||.. +.++++.+.+++ .+++|+++.+++.|+++++. ..+++
T Consensus 68 GEPll~~~-l~~li~~i~~~~gi----~~v~itTNG~ll~~~~~~L~~~gl~-~v~ISld~~~~~~~~~i~~~--~~~~~ 139 (334)
T TIGR02666 68 GEPLLRKD-LVELVARLAALPGI----EDIALTTNGLLLARHAKDLKEAGLK-RVNVSLDSLDPERFAKITRR--GGRLE 139 (334)
T ss_pred ccccccCC-HHHHHHHHHhcCCC----CeEEEEeCchhHHHHHHHHHHcCCC-eEEEecccCCHHHhheeCCC--CCCHH
Confidence 99999965 77889888763 43 26999999985 467888888874 89999999999999999853 34799
Q ss_pred HHHHHHHHHHHhcCCc-EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCc
Q 028700 79 KLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 140 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~-V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~ 140 (205)
+++++++.+.+ .|.+ |++++++++|+|++ ++.++++|++++++.+.+++|+|+|....|
T Consensus 140 ~vl~~i~~l~~-~G~~~v~in~vv~~g~n~~--ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~ 199 (334)
T TIGR02666 140 QVLAGIDAALA-AGLEPVKLNTVVMRGVNDD--EIVDLAEFAKERGVTLRFIELMPLGEGNGW 199 (334)
T ss_pred HHHHHHHHHHH-cCCCcEEEEEEEeCCCCHH--HHHHHHHHHHhcCCeEEEEeccCCCCCccc
Confidence 99999997665 5665 99999999999985 799999999999988999999999743333
No 35
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.71 E-value=4e-16 Score=132.83 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=125.5
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 80 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i 80 (205)
-|||+|. ..+-++++.+|+.|. ..++|=|||..|.+.+-+... +.|.+||+|.|++.|+++.+++....+++|
T Consensus 88 ~GEPTLy-~~L~elI~~~k~~g~----~~tflvTNgslpdv~~~L~~~--dql~~sLdA~~~~~~~~InRP~~~~~~e~i 160 (296)
T COG0731 88 SGEPTLY-PNLGELIEEIKKRGK----KTTFLVTNGSLPDVLEELKLP--DQLYVSLDAPDEKTFRRINRPHKKDSWEKI 160 (296)
T ss_pred CCCcccc-cCHHHHHHHHHhcCC----ceEEEEeCCChHHHHHHhccC--CEEEEEeccCCHHHHHHhcCCCCcchHHHH
Confidence 3999998 448899999998762 279999999998654444433 379999999999999999999888999999
Q ss_pred HHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCCCcc-----CCcHHHHHHHHHH
Q 028700 81 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQFR-----TSSDDKVSSFQKI 154 (205)
Q Consensus 81 ~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~~~~-----~~~~e~l~~~~~~ 154 (205)
+++++.+.+....+.++|+.||.|+||++|+++++++|++... .+|++--|+-.| ...|. .|..+++..|.+.
T Consensus 161 le~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~rpg-as~~~l~~~~~p~~e~~~~f~~~ 239 (296)
T COG0731 161 LEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELKTYMRPG-ASRYRLPRSNMPLHEEVLEFAKE 239 (296)
T ss_pred HHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEecCccCC-hHhhccCccccchhHHHHHHHHH
Confidence 9999977764266899999999999999999999999999886 477777777776 44444 6778888888888
Q ss_pred HHhcCCceE
Q 028700 155 LRGSYNIRT 163 (205)
Q Consensus 155 l~~~~Gi~~ 163 (205)
+.+..|+.+
T Consensus 240 l~~~~~~~~ 248 (296)
T COG0731 240 LGEELGYEI 248 (296)
T ss_pred hhcccCeee
Confidence 762225544
No 36
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=117.34 Aligned_cols=113 Identities=16% Similarity=0.276 Sum_probs=99.6
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
||||++. .++.++++.+++. |++ .+++.|||.. +.+++|.++++| ++++|++|+||+.-+.+.|.. .|.
T Consensus 168 qGEP~lY-P~l~~lVqalk~~~~v~----vVSmQTng~~L~~~lv~eLeeAGLd-RiNlSv~aLDpk~Ak~L~G~~-dYd 240 (414)
T COG2100 168 QGEPLLY-PHLVDLVQALKEHKGVE----VVSMQTNGVLLSKKLVDELEEAGLD-RINLSVDALDPKLAKMLAGRK-DYD 240 (414)
T ss_pred CCCCccc-hhHHHHHHHHhcCCCce----EEEEeeCceeccHHHHHHHHHhCCc-eEEeecccCCHHHHHHhcCcc-ccC
Confidence 7999998 7799999999987 553 5999999975 468999999985 999999999999999999864 789
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
++.+++.++..+. .+..|.|.=+++||+||+ ++..+++|+...+
T Consensus 241 v~kvle~aE~i~~-a~idvlIaPv~lPG~ND~--E~~~iIe~A~~iG 284 (414)
T COG2100 241 VKKVLEVAEYIAN-AGIDVLIAPVWLPGVNDD--EMPKIIEWAREIG 284 (414)
T ss_pred HHHHHHHHHHHHh-CCCCEEEeeeecCCcChH--HHHHHHHHHHHhC
Confidence 9999999985544 889999999999999998 7899999999874
No 37
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.49 E-value=9.1e-13 Score=105.89 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=91.5
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcC-CCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~-~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||+++++ +.++++.+++.|+ .+++.|||..+ .++++++.+ .+ .+.+|+++ .++.+..+++..+... ++
T Consensus 71 GEPll~~~-l~~li~~~~~~g~-----~v~i~TNg~~~~~l~~l~~~g~~~-~v~isl~~-~~~~~~~~~g~~~~~~-~~ 141 (191)
T TIGR02495 71 GEPTLQAG-LPDFLRKVRELGF-----EVKLDTNGSNPRVLEELLEEGLVD-YVAMDVKA-PPEKYPELYGLEKNGS-NN 141 (191)
T ss_pred CcccCcHh-HHHHHHHHHHCCC-----eEEEEeCCCCHHHHHHHHhcCCCc-EEEEeccC-ChHHHHHHHCCCCchH-HH
Confidence 99999988 8999999998776 79999999865 577777765 33 68899999 4778888887643321 48
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
++++++.+ .+.+.++.++++++||.|+ +++++++++|+++.+
T Consensus 142 ~~~~i~~l-~~~gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 142 ILKSLEIL-LRSGIPFELRTTVHRGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHHHH-HHcCCCEEEEEEEeCCCCC-HHHHHHHHHHhccCC
Confidence 88999755 4478899999999999999 789999999999887
No 38
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.38 E-value=4e-11 Score=106.19 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=107.6
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
||||++++ +.++++.+++.|+ .+.+.|||.. ..++.+.+.+.+ .+.+||++.+++.|.++.|.. .+++
T Consensus 71 GEPll~~~-~~~il~~~~~~g~-----~~~i~TNG~ll~~~~~~~L~~~g~~-~v~iSldg~~~e~~d~irg~~--g~f~ 141 (378)
T PRK05301 71 GEPLLRKD-LEELVAHARELGL-----YTNLITSGVGLTEARLAALKDAGLD-HIQLSFQDSDPELNDRLAGTK--GAFA 141 (378)
T ss_pred CccCCchh-HHHHHHHHHHcCC-----cEEEECCCccCCHHHHHHHHHcCCC-EEEEEecCCCHHHHHHHcCCC--chHH
Confidence 99999977 7799999998777 7899999974 468888888764 799999999999999987653 3689
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCC---CCccCCcHHHHHHHHHH
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV---SQFRTSSDDKVSSFQKI 154 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~---~~~~~~~~e~l~~~~~~ 154 (205)
+++++++.+ ++.+.+|.+++++. ..| .+++.++++|+.++++ .+.+.++.+.|-. .....|++++++++.+.
T Consensus 142 ~~~~~i~~l-~~~g~~v~i~~vv~-~~N--~~~i~~~~~~~~~lgv~~i~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~ 217 (378)
T PRK05301 142 KKLAVARLV-KAHGYPLTLNAVIH-RHN--IDQIPRIIELAVELGADRLELANTQYYGWALLNRAALMPTREQLERAERI 217 (378)
T ss_pred HHHHHHHHH-HHCCCceEEEEEee-cCC--HHHHHHHHHHHHHcCCCEEEEecccccChhhhcccccCCCHHHHHHHHHH
Confidence 999999854 44788999999864 444 5589999999999985 5777666665411 11234667777665444
Q ss_pred H
Q 028700 155 L 155 (205)
Q Consensus 155 l 155 (205)
+
T Consensus 218 ~ 218 (378)
T PRK05301 218 V 218 (378)
T ss_pred H
Confidence 3
No 39
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.33 E-value=7.1e-11 Score=103.79 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=103.4
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
||||++++ +.++++.+++.|+ ++.+.|||.. ..++++.+.+++ .+.+||++.+++.|.++.|.. ..++
T Consensus 62 GEPll~~~-~~~ii~~~~~~g~-----~~~l~TNG~ll~~e~~~~L~~~g~~-~v~iSldg~~~e~~d~~rg~~--g~f~ 132 (358)
T TIGR02109 62 GEPLARPD-LVELVAHARRLGL-----YTNLITSGVGLTEARLDALADAGLD-HVQLSFQGVDEALADRIAGYK--NAFE 132 (358)
T ss_pred cccccccc-HHHHHHHHHHcCC-----eEEEEeCCccCCHHHHHHHHhCCCC-EEEEeCcCCCHHHHHHhcCCc--cHHH
Confidence 99999976 7799999998776 7999999974 368888888764 799999999999999987643 3688
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCC-C--CCccCCcHHHHHHHHHH
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGS-V--SQFRTSSDDKVSSFQKI 154 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~-~--~~~~~~~~e~l~~~~~~ 154 (205)
.++++++.+. +.+.++.+++++-+ . +.+++.++++|+.++++ .+.+.+..+.|. . .....|+.++++++.+.
T Consensus 133 ~v~~~i~~l~-~~g~~v~v~~vv~~-~--N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~ 208 (358)
T TIGR02109 133 QKLAMARAVK-AAGLPLTLNFVIHR-H--NIDQIPEIIELAIELGADRVELATTQYYGWALLNRAALMPTRAQLEEATRI 208 (358)
T ss_pred HHHHHHHHHH-hCCCceEEEEEecc-C--CHHHHHHHHHHHHHcCCCEEEEEeeeccCchhcchhhcCCCHHHHHHHHHH
Confidence 9999998554 47888999988654 3 45689999999999984 465544433331 1 11234666666554443
No 40
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.32 E-value=6e-11 Score=103.09 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=98.5
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||++++ +.++++.+++.|. ++.+.|||.. +.+.++.+.+. ..+.+||+... +.|.+..+. ...++.
T Consensus 81 GEPLL~pd-l~eiv~~~~~~g~-----~v~l~TNG~ll~~~~~~l~~~~~-~~i~VSLDG~~-e~hd~~~~~--~g~f~~ 150 (318)
T TIGR03470 81 GEPLLHPE-IDEIVRGLVARKK-----FVYLCTNALLLEKKLDKFEPSPY-LTFSVHLDGLR-EHHDASVCR--EGVFDR 150 (318)
T ss_pred cccccccc-HHHHHHHHHHcCC-----eEEEecCceehHHHHHHHHhCCC-cEEEEEEecCc-hhhchhhcC--CCcHHH
Confidence 99999976 7999999988766 7999999986 35777777664 47889999974 777776543 347999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
++++++.+.+ .|.+|.++++++++.| .+++.+++++++++++ .+.+.|..+.+
T Consensus 151 ~l~~I~~l~~-~G~~v~v~~tv~~~~n--~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 151 AVEAIREAKA-RGFRVTTNTTLFNDTD--PEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHH-CCCcEEEEEEEeCCCC--HHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 9999996655 6789999999888754 5689999999999986 78888888876
No 41
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.14 E-value=1.5e-09 Score=86.47 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=101.5
Q ss_pred CCccCCCHH-HHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 1 MGEPLNNYA-ALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 1 mGEPllq~~-~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
.|||+++.+ .+.++++.+++.+-......+.+.|||.. ..++++.+.+.+ .+.+|+++.+++.|+.+.+ ..+
T Consensus 59 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~-~i~isl~~~~~~~~~~~~~---~~~ 134 (216)
T smart00729 59 GGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVN-RVSLGVQSGSDEVLKAINR---GHT 134 (216)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCC-eEEEecccCCHHHHHHhcC---CCC
Confidence 489999876 47888888877621001236888999653 468899888864 8999999999999998643 346
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
+++++++++.+.+ .|. +.+++.+++|++ ++.+++.++++|+.+.+. .|.+.||+|..
T Consensus 135 ~~~~~~~i~~~~~-~g~-~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~ 193 (216)
T smart00729 135 VEDVLEAVEKLRE-AGP-IKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRP 193 (216)
T ss_pred HHHHHHHHHHHHH-hCC-cceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCC
Confidence 7999999986655 553 778888899997 899999999999999886 59999999885
No 42
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.95 E-value=2.4e-08 Score=88.23 Aligned_cols=153 Identities=20% Similarity=0.325 Sum_probs=106.7
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCcEE-EEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKRIT-VSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~~~-v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
+++ ++..+.+..++.+..+- ....|+. .+.||+. ...+++.+++++ .|.||+|++||+.|++||+-. .-++
T Consensus 89 d~~-c~p~le~~~~r~~~~~~-d~~~rL~~tsG~~~~lt~~~~~i~~~gvd-ev~~SVhtT~p~lR~klm~n~---~A~~ 162 (414)
T COG1625 89 DTF-CYPDLEPRGRRARLYYK-DDDIRLSFTSGSGFTLTNRAERIIDAGVD-EVYFSVHTTNPELRAKLMKNP---NAEQ 162 (414)
T ss_pred Ccc-cCcchhhhhhHHHhhcC-CccceeeeeeccceeccchHHHHHHcCCC-eeEEEEeeCCHHHHHHHhcCC---cHHH
Confidence 344 33446677777765431 1112343 3556654 367889999985 899999999999999999654 3467
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCC-----ccCCcHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ-----FRTSSDDKVSSFQK 153 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~-----~~~~~~e~l~~~~~ 153 (205)
+++.++.+.. ....|.-.++|+||+||. +++.+.++-+.+++. .+.++.+-|.| ... ..++..++++.+++
T Consensus 163 ~le~L~~f~~-~~~~v~a~iVl~PGvNdg-e~L~kT~~dL~~~g~~~~~~~~~~pvG-lt~~n~~~i~~~t~~~l~~~k~ 239 (414)
T COG1625 163 LLELLRRFAE-RCIEVHAQIVLCPGVNDG-EELEKTLEDLEEWGAHEVILMRVVPVG-LTRYNRPGIRPPTPHELEEFKE 239 (414)
T ss_pred HHHHHHHHHH-hhhheeeEEEEcCCcCcH-HHHHHHHHHHHHhCcCceeEEEeecce-eeecCCCCCCCCCHHHHHHHHH
Confidence 9999997766 566899999999999996 478999999998874 35555455665 222 35677888888876
Q ss_pred HHHh---cCC-ceEE
Q 028700 154 ILRG---SYN-IRTT 164 (205)
Q Consensus 154 ~l~~---~~G-i~~~ 164 (205)
+.++ ++| +.++
T Consensus 240 i~re~~~E~~~~~V~ 254 (414)
T COG1625 240 IVREFDRELGSIRVT 254 (414)
T ss_pred HHHHHHHhcCceEEe
Confidence 6431 466 5553
No 43
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=98.94 E-value=1.3e-08 Score=77.91 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=83.4
Q ss_pred CCccCCCHHHHHHHHHHhhc--CCCCCCCCcEEEEcCCcHH---HHHHHhhcCCCceEEEeecCCCHH-hhhhhcCCCCC
Q 028700 1 MGEPLNNYAALVEAVRIMTG--LPFQVSPKRITVSTVGIVH---AINKFHSDLPGLNLAVSLHAPVQD-VRCQIMPAARA 74 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~--~~i~~~~~~~~v~T~G~~~---~~~~l~~~~~~~~l~~slk~~d~~-~~~~i~~~~~~ 74 (205)
.|||++++++...+....+. .++ ++.+.|||... .++.+.+++. ..+.+++++.+++ .++.+. +.
T Consensus 53 ~gep~~~~~~~~~~~~~~~~~~~~~-----~i~~~t~~~~~~~~~l~~l~~~~~-~~i~~~l~s~~~~~~~~~~~---~~ 123 (166)
T PF04055_consen 53 GGEPTLHPDFIELLELLRKIKKRGI-----RISINTNGTLLDEELLDELKKLGV-DRIRISLESLDEESVLRIIN---RG 123 (166)
T ss_dssp SSTGGGSCHHHHHHHHHHHCTCTTE-----EEEEEEESTTHCHHHHHHHHHTTC-SEEEEEEBSSSHHHHHHHHS---ST
T ss_pred ecCCCcchhHHHHHHHHHHhhcccc-----ceeeeccccchhHHHHHHHHhcCc-cEEecccccCCHHHhhhhhc---CC
Confidence 49999998866666555554 244 89999999873 6888888885 4899999999999 555543 34
Q ss_pred CCHHHHHHHHHHHHHhcCCc-EEEEEEEeCCCCCCHHHHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLL 119 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~-V~ir~~lIpGiNDs~e~i~~l~~~l 119 (205)
..+++++++++.+.+ .|.+ +...++++||.|+ ++++++++|+
T Consensus 124 ~~~~~~~~~l~~l~~-~g~~~~~~~i~~~~~~~~--~e~~~~~~~i 166 (166)
T PF04055_consen 124 KSFERVLEALERLKE-AGIPRVIIFIVGLPGEND--EEIEETIRFI 166 (166)
T ss_dssp SHHHHHHHHHHHHHH-TTSETEEEEEEEBTTTSH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-cCCCcEEEEEEEeCCCCH--HHHHHHhCcC
Confidence 578999999996665 5555 9999999999876 4788998885
No 44
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.93 E-value=5.1e-08 Score=84.30 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=96.4
Q ss_pred CccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCc--H-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGI--V-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~--~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|||+++ ..+.++++..++. ++ .++++|||. . ..++++.+.+.+ .+.+|+++.+++.|..+.|. +..+
T Consensus 74 GEPll~-~d~~ei~~~~~~~~~~-----~~~~~TnG~~~~~~~~~~l~~~g~~-~v~iSid~~~~e~hd~~rg~--~g~~ 144 (347)
T COG0535 74 GEPLLR-PDLLEIVEYARKKGGI-----RVSLSTNGTLLTEEVLEKLKEAGLD-YVSISLDGLDPETHDPIRGV--KGVF 144 (347)
T ss_pred CCcccc-ccHHHHHHHHhhcCCe-----EEEEeCCCccCCHHHHHHHHhcCCc-EEEEEecCCChhhhhhhcCC--CcHH
Confidence 999999 6689999998865 55 899999993 2 357777777764 89999999999999998875 3468
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
+..+++++.+.+ .+..+.++ +.+.+.|+. ++.++++++..++ ..+.+.++++.|
T Consensus 145 ~~~~~~i~~~~~-~g~~~~~~-~~v~~~n~~--~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347)
T COG0535 145 KRAVEAIKNLKE-AGILVVIN-TTVTKINYD--ELPEIADLAAELGVDELNVFPLIPVG 199 (347)
T ss_pred HHHHHHHHHHHH-cCCeeeEE-EEEecCcHH--HHHHHHHHHHHcCCCEEEEEEEeecc
Confidence 889999986654 66664444 457777776 8899999999998 467888888876
No 45
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.93 E-value=5e-08 Score=86.05 Aligned_cols=127 Identities=13% Similarity=0.185 Sum_probs=90.0
Q ss_pred CccCCCH-HHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--H-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCC-CCCC
Q 028700 2 GEPLNNY-AALVEAVRIMTGLPFQVSPKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA-RAFP 76 (205)
Q Consensus 2 GEPllq~-~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~-~~~~ 76 (205)
||||+++ +++.++++.+++.+..--...+++.|||.. + .++.+.+.+ +.+.+||+.. ++.|.++-+.. +..+
T Consensus 66 GEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~--~~v~iSlDg~-~~~hd~~R~~~~g~~~ 142 (370)
T PRK13758 66 GEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENK--FLVGLSMDGP-KEIHNLNRKDCCGLDT 142 (370)
T ss_pred CccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcC--ceEEEeecCC-HHHhccccCCCCCCcc
Confidence 8999984 777788888877542100114689999975 3 566666655 3788999998 46676654322 3457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEee-cCCCC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIP-FNPIG 135 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip-~~~~g 135 (205)
++.++++++.+.+ .+.++.+++++-+. | .+++.++++|+.+++. .+.+++ +.|.+
T Consensus 143 f~~v~~~i~~l~~-~~~~~~i~~~v~~~-n--~~~l~~i~~~~~~~g~~~~~~~~~~~p~~ 199 (370)
T PRK13758 143 FSKVERAAELFKK-YKVEFNILCVVTSN-T--ARHVNKIYKYFKEKDFKFLQFINCLDPLY 199 (370)
T ss_pred HHHHHHHHHHHHH-hCCCceEEEEeccc-c--ccCHHHHHHHHHHcCCCeEeeeeccCccc
Confidence 9999999987665 57789999887764 3 4578999999998885 466665 35554
No 46
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=98.92 E-value=5e-08 Score=76.56 Aligned_cols=130 Identities=22% Similarity=0.216 Sum_probs=100.3
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
.|||+.++ .+.++++.+++.. +...+.+.|+|.. ..++++.+++. ..+.+++++.+++.++.+. .....+
T Consensus 52 ggep~~~~-~~~~~i~~~~~~~---~~~~~~i~T~~~~~~~~~~~~l~~~g~-~~i~i~le~~~~~~~~~~~--~~~~~~ 124 (204)
T cd01335 52 GGEPLLYP-ELAELLRRLKKEL---PGFEISIETNGTLLTEELLKELKELGL-DGVGVSLDSGDEEVADKIR--GSGESF 124 (204)
T ss_pred CCcCCccH-hHHHHHHHHHhhC---CCceEEEEcCcccCCHHHHHHHHhCCC-ceEEEEcccCCHHHHHHHh--cCCcCH
Confidence 49999997 7999999999871 1228999999986 36888888865 4899999999999999986 234578
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--ceEEEeecCCCCCCCCc
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSVSQF 140 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~~v~lip~~~~g~~~~~ 140 (205)
++++++++.+.+ .+..+.+.+++..+.++ .+++.+..+++.... ..+.+.+|.|.+ +..+
T Consensus 125 ~~~~~~i~~~~~-~~~~~~~~~i~g~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~p~~-~t~~ 186 (204)
T cd01335 125 KERLEALKELRE-AGLGLSTTLLVGLGDED-EEDDLEELELLAEFRSPDRVSLFRLLPEE-GTPL 186 (204)
T ss_pred HHHHHHHHHHHH-cCCCceEEEEEecCCCh-hHHHHHHHHHHHhhcCcchhhhhhhcccC-CCee
Confidence 999999987665 57788888888888877 345566666666654 357888999986 5443
No 47
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=98.88 E-value=3.8e-09 Score=88.27 Aligned_cols=171 Identities=18% Similarity=0.288 Sum_probs=117.3
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH--HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~--~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||+.. ..+.+....+.+- .+-+.+.|+|||+.- .+-++-..+++ .+++|+++..++++.+++. +.....
T Consensus 68 geptIr-~di~~i~~g~~~l---~gLks~~ITtng~vl~R~lp~lhkagls-siNiSldtl~~aKfa~~~r---r~g~v~ 139 (323)
T KOG2876|consen 68 GEPLIR-QDIVPIVAGLSSL---PGLKSIGITTNGLVLARLLPQLHKAGLS-SINISLDTLVRAKFAKLTR---RKGFVK 139 (323)
T ss_pred CCCccc-ccccchhhhhhcc---cchhhhceeccchhhhhhhhHHHhhccc-chhhhhhhhhHHHHHHHhh---hccHHH
Confidence 889987 4466665555543 122578999999863 34455556764 8999999999999999974 456889
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccC----CcHHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT----SSDDKVSSFQKIL 155 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~----~~~e~l~~~~~~l 155 (205)
|++.++........+|++++++..|+|++ ++-+++.+-+..+..|.+|.|+|++ +.+|.. |-.+.+.-+++..
T Consensus 140 V~~~iq~a~~lgy~pvkvn~v~~k~~n~~--ev~Dfv~~tr~~p~DVrfIe~mpf~-gn~~~t~~lIpy~e~l~l~~~~~ 216 (323)
T KOG2876|consen 140 VWASIQLAIELGYNPVKVNCVVMKGLNED--EVFDFVLLTRMRPLDVRFIEFMPFD-GNKWNTKSLIPYKEMLDLIVKPW 216 (323)
T ss_pred HHHHHhHHhhhCCCCcceeeEEEeccCCC--cccceeeecCCCCcceEEEEecccC-CCcccccccccHHHHHHHHhccC
Confidence 99999866654445799999999999998 5666666666666789999999987 666542 2222222222111
Q ss_pred -----------------HhcCCc--eEEeccccccccccccccccccc
Q 028700 156 -----------------RGSYNI--RTTVRKQMGQDISGACGQLVVNL 184 (205)
Q Consensus 156 -----------------~~~~Gi--~~~i~~~~g~d~~~~Cgql~~~~ 184 (205)
. ..|. .+.+-+++-.++|++|-.|+.++
T Consensus 217 d~~~~l~~e~s~T~Ka~~-i~g~~gqvsfitsm~~hfC~tcnrlr~~a 263 (323)
T KOG2876|consen 217 DFSVRLPDEPSDTAKAYK-IDGFQGQVSFITSMSEHFCGTCNRLRITA 263 (323)
T ss_pred chhhcCCCCCCccccccc-cccccceEEeehhhHHHHHhhhhhheEec
Confidence 1 1111 23334566679999999998654
No 48
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.76 E-value=1.8e-07 Score=83.99 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=86.4
Q ss_pred CccCCCHH-HHHHHHHHhhc--CCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCC-CC
Q 028700 2 GEPLNNYA-ALVEAVRIMTG--LPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA-RA 74 (205)
Q Consensus 2 GEPllq~~-~l~~~l~~lk~--~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~-~~ 74 (205)
||||++++ +..++++.+++ .+.++ .+++.|||.. .+++.+.+.+ +.|.+|||.. ++.|..+-+.. ..
T Consensus 76 GEPlL~~~~~~~~~~~~~~~~~~~~~i---~~~i~TNG~ll~~e~~~~l~~~~--~~v~ISlDG~-~~~hD~~R~~~~g~ 149 (412)
T PRK13745 76 GETLMRPLSFYKKALELQKKYARGRQI---DNCIQTNGTLLTDEWCEFFRENN--FLVGVSIDGP-QEFHDEYRKNKMGK 149 (412)
T ss_pred cccCCCcHHHHHHHHHHHHHHcCCCce---EEEEeecCEeCCHHHHHHHHHcC--eEEEEEecCC-HHHhhhhcCCCCCC
Confidence 99999965 54455544432 12211 7899999975 3667777765 4788999998 46666553322 24
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCC
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNP 133 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~ 133 (205)
.++++++++++.+.+ .+..+.+.+++.+ .|- +++.++.+|++++++ .+.++|+.+
T Consensus 150 gsf~~v~~~i~~l~~-~gi~~~i~~vv~~-~n~--~~~~e~~~~~~~lg~~~~~~~p~~~ 205 (412)
T PRK13745 150 PSFVKVMKGINLLKK-HGVEWNAMAVVND-FNA--DYPLDFYHFFKELDCHYIQFAPIVE 205 (412)
T ss_pred ccHHHHHHHHHHHHH-cCCCEEEEEEEcC-Ccc--ccHHHHHHHHHHcCCCeEEEEeccC
Confidence 589999999986655 6778888877655 444 378899999999985 688888776
No 49
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=98.72 E-value=1.4e-06 Score=76.00 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=95.9
Q ss_pred CccCCC-HHHHHHHHHHhhcCCCCCCCCcEEEEcCC-----cH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCC
Q 028700 2 GEPLNN-YAALVEAVRIMTGLPFQVSPKRITVSTVG-----IV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 72 (205)
Q Consensus 2 GEPllq-~~~l~~~l~~lk~~~i~~~~~~~~v~T~G-----~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~ 72 (205)
||||+. .+.+.++++.+++.+. ...+.+.|.+ .. ..++.+.+.+ ..+.+++|+..+.. +
T Consensus 145 GDPl~~~~~~L~~ll~~l~~i~~---v~~iri~Tr~~v~~p~rit~ell~~L~~~g--~~v~i~l~~~h~~e---l---- 212 (321)
T TIGR03822 145 GDPLVLSPRRLGDIMARLAAIDH---VKIVRFHTRVPVADPARVTPALIAALKTSG--KTVYVALHANHARE---L---- 212 (321)
T ss_pred CCcccCCHHHHHHHHHHHHhCCC---ccEEEEeCCCcccChhhcCHHHHHHHHHcC--CcEEEEecCCChhh---c----
Confidence 999975 5679999999987421 1245777743 21 2466676666 35778888875432 2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHH
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSF 151 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~ 151 (205)
.++++++++.+.+ .|..+.++++|++|+||+.+++.++.+++...++ .+-+-.+.+.+....+ ..+.++..++
T Consensus 213 ----~~~~~~ai~~L~~-~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f-~~~~~~~~~i 286 (321)
T TIGR03822 213 ----TAEARAACARLID-AGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHF-RVTIEEGQAL 286 (321)
T ss_pred ----CHHHHHHHHHHHH-cCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccc-cCcHHHHHHH
Confidence 2578888885554 7889999999999999999999999999999885 3556667777523334 4555666665
Q ss_pred HHHHH
Q 028700 152 QKILR 156 (205)
Q Consensus 152 ~~~l~ 156 (205)
.+.+.
T Consensus 287 ~~~l~ 291 (321)
T TIGR03822 287 VRALR 291 (321)
T ss_pred HHHHH
Confidence 55544
No 50
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.64 E-value=1.6e-06 Score=77.05 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=111.0
Q ss_pred CccCC--CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GEPLN--NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GEPll--q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
||+.. ..+.+.++++.+++. ++ +++++++... ..+++|.+++.+ .+++++.+.+++.++++++...+..++
T Consensus 129 Ge~p~~~~~e~l~~~i~~Ik~~---~p--~i~i~~g~lt~e~l~~Lk~aGv~-r~~i~lET~~~~~~~~i~~~g~~h~~~ 202 (371)
T PRK09240 129 GEHEAKVGVDYIRRALPIAREY---FS--SVSIEVQPLSEEEYAELVELGLD-GVTVYQETYNPATYAKHHLRGPKRDFE 202 (371)
T ss_pred CCCCCCCCHHHHHHHHHHHHHh---CC--CceeccCCCCHHHHHHHHHcCCC-EEEEEEecCCHHHHHHhCcCCCCCCHH
Confidence 78665 478999999999864 22 4667665544 478999999985 899999999999999998765677899
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-------eEEEeecCCCCCCCCc---cCCcHHHH
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-------VVNLIPFNPIGSVSQF---RTSSDDKV 148 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-------~v~lip~~~~g~~~~~---~~~~~e~l 148 (205)
+.++.++.+.+ .|-+ .+++.+|-|++++.+++-.++..++.+.. .|.+..++|+. + .+ .++++.++
T Consensus 203 ~rl~~i~~a~~-aG~~-~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~-g-~~~~~~~~~~~e~ 278 (371)
T PRK09240 203 YRLETPERAGR-AGIR-KIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCT-G-GIEPASIVSDKQL 278 (371)
T ss_pred HHHHHHHHHHH-cCCC-eeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCC-C-CCCCCCCCCHHHH
Confidence 99999986654 4543 69999999999999999888887776642 46666677874 4 33 45677787
Q ss_pred HHHHHHHH
Q 028700 149 SSFQKILR 156 (205)
Q Consensus 149 ~~~~~~l~ 156 (205)
.++...++
T Consensus 279 l~~ia~~R 286 (371)
T PRK09240 279 VQLICAFR 286 (371)
T ss_pred HHHHHHHH
Confidence 77766655
No 51
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.64 E-value=5.1e-07 Score=78.69 Aligned_cols=137 Identities=19% Similarity=0.284 Sum_probs=86.1
Q ss_pred CccCCCHHH-HHHHHHHhhcCCCCCCCCcEEEEc-------CCcHH-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCC
Q 028700 2 GEPLNNYAA-LVEAVRIMTGLPFQVSPKRITVST-------VGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAA 72 (205)
Q Consensus 2 GEPllq~~~-l~~~l~~lk~~~i~~~~~~~~v~T-------~G~~~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~ 72 (205)
||||++.+. +.++++.+..... ...+-+.| +-+.+ .++.+..++....+.+|+++.. |.|.
T Consensus 151 GEPL~~~d~~L~~ll~~l~~i~~---~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei~d------ 220 (321)
T TIGR03821 151 GDPLMAKDHRLDWLLNLLEQIPH---LKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EIDA------ 220 (321)
T ss_pred cccccCCchHHHHHHHHHHhCCC---CcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hCcH------
Confidence 999998765 5567766655211 11233333 32223 3555555554322336898884 5543
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHH
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSF 151 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~ 151 (205)
...++++.+. +.|.+|.+++++++|+||+.+++.+|.+++..+++ .+-+..+.+.|....+. .+.++..++
T Consensus 221 ------~~~~ai~~L~-~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~-v~~~~~~~i 292 (321)
T TIGR03821 221 ------EVADALAKLR-NAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFD-VDDERARAL 292 (321)
T ss_pred ------HHHHHHHHHH-HcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCccccc-CCHHHHHHH
Confidence 3555676443 47899999999999999999999999999998875 35566677776333344 444555554
Q ss_pred HHHHH
Q 028700 152 QKILR 156 (205)
Q Consensus 152 ~~~l~ 156 (205)
.+.+.
T Consensus 293 ~~~l~ 297 (321)
T TIGR03821 293 MAELL 297 (321)
T ss_pred HHHHH
Confidence 44443
No 52
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.59 E-value=1.5e-06 Score=77.99 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=77.8
Q ss_pred cCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHH
Q 028700 34 TVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 113 (205)
Q Consensus 34 T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~ 113 (205)
||-.-..++++..+.+. -+++|+|++||+.|+++++.. ...++++.++.+.+ .+..+...+|++||+||.+ +++
T Consensus 124 TNl~~~d~~RI~~~~ls-pl~iSVhat~p~lR~~ll~n~---~a~~il~~l~~l~~-~~I~~h~qiVlcPGiNDg~-~L~ 197 (433)
T TIGR03279 124 TNLPPAEWQRIEQLRLS-PLYVSVHATEPSLRARLLKNP---RAGLILEQLKWFQE-RRLQLHAQVVVCPGINDGK-HLE 197 (433)
T ss_pred cCCCHHHHHHHHHcCCC-CEEEEEecCCHHHHHHHhCCC---CHHHHHHHHHHHHH-cCCeEEEEEEEcCCcCCHH-HHH
Confidence 44334578899988764 799999999999999999754 46789999987666 5789999999999999965 578
Q ss_pred HHHHHHhcC----CceEEEeecCCCCCCCCc
Q 028700 114 QLGKLLETF----QVVVNLIPFNPIGSVSQF 140 (205)
Q Consensus 114 ~l~~~l~~~----~~~v~lip~~~~g~~~~~ 140 (205)
+.++.+..+ ...|.=+-.-|+| -.+|
T Consensus 198 ~Ti~dL~~~~~~~~P~v~S~avVPVG-lTk~ 227 (433)
T TIGR03279 198 RTLRDLAQFHDGDWPTVLSVAVVPVG-LTRF 227 (433)
T ss_pred HHHHHHHhhcccCCCceeEEEEEccc-cccC
Confidence 888888777 3456666666777 4444
No 53
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.53 E-value=2.3e-06 Score=74.90 Aligned_cols=139 Identities=18% Similarity=0.230 Sum_probs=84.7
Q ss_pred CccCCCHH-HHHHHHHHhhcCCCCCCCCcEEEEcCCcH-----HH-HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCC
Q 028700 2 GEPLNNYA-ALVEAVRIMTGLPFQVSPKRITVSTVGIV-----HA-INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 74 (205)
Q Consensus 2 GEPllq~~-~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-----~~-~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~ 74 (205)
||||+..+ .+.++++.+++.+- ....++...|+|.. +. ++.+...+.. .+.++......+.+
T Consensus 168 GDPLl~~d~~L~~ll~~L~~i~~-~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~-~~~vsh~nh~~Ei~--------- 236 (331)
T TIGR00238 168 GDPLMAKDHELEWLLKRLEEIPH-LVRLRIGTRLPVVIPQRITDELCELLASFELQ-LMLVTHINHCNEIT--------- 236 (331)
T ss_pred CccccCCHHHHHHHHHHHHhcCC-ccEEEeecCCCccCchhcCHHHHHHHHhcCCc-EEEEccCCChHhCC---------
Confidence 89998765 47788888876310 01113444455543 22 4444444532 33344222223321
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQK 153 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~ 153 (205)
+.+.++++.+. ..|.+|.+++||++|+||+.+.+.+|.+++...++ .+-+..+.+.+....|..| .++..++.+
T Consensus 237 ---~~~~~ai~~L~-~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f~~~-~~~~~~i~~ 311 (331)
T TIGR00238 237 ---EEFAEAMKKLR-TVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHFLVP-DAEAAQIVK 311 (331)
T ss_pred ---HHHHHHHHHHH-HcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccccCC-HHHHHHHHH
Confidence 45677777544 47899999999999999999999999999998874 3445566777633445544 455444444
Q ss_pred HHH
Q 028700 154 ILR 156 (205)
Q Consensus 154 ~l~ 156 (205)
.++
T Consensus 312 ~l~ 314 (331)
T TIGR00238 312 ELA 314 (331)
T ss_pred HHH
Confidence 433
No 54
>PRK07094 biotin synthase; Provisional
Probab=98.44 E-value=2e-05 Score=68.40 Aligned_cols=142 Identities=13% Similarity=0.204 Sum_probs=104.6
Q ss_pred Cc-cCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GE-PLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GE-Pllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
|+ |....+.+.++++.+++. ++ ++++++.... ..++.+.+.+.+ .+.+++.+.+++.++++.+ ..+.+
T Consensus 95 G~~~~~~~~~l~~l~~~i~~~~~l-----~i~~~~g~~~~e~l~~Lk~aG~~-~v~~glEs~~~~~~~~i~~---~~s~~ 165 (323)
T PRK07094 95 GEDPYYTDEKIADIIKEIKKELDV-----AITLSLGERSYEEYKAWKEAGAD-RYLLRHETADKELYAKLHP---GMSFE 165 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHccCCc-----eEEEecCCCCHHHHHHHHHcCCC-EEEeccccCCHHHHHHhCC---CCCHH
Confidence 65 666789999999999985 44 5666553333 468888888874 8889999999999999875 35788
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc---cCCcHHHHHHHHH
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF---RTSSDDKVSSFQK 153 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~---~~~~~e~l~~~~~ 153 (205)
+.++.++.+.+ .|.. +..-+|-|+ .++.+++.+.+++++.++. .+.+.+|.|.. +.++ .+++.++..++..
T Consensus 166 ~~~~~i~~l~~-~Gi~--v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~p-gTpl~~~~~~~~~~~~~~~a 241 (323)
T PRK07094 166 NRIACLKDLKE-LGYE--VGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHP-DTPLKDEKGGSLELTLKVLA 241 (323)
T ss_pred HHHHHHHHHHH-cCCe--ecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCC-CCCcccCCCCCHHHHHHHHH
Confidence 99999985544 5654 444456566 6788899999999999985 57788888874 4433 4566666666555
Q ss_pred HHH
Q 028700 154 ILR 156 (205)
Q Consensus 154 ~l~ 156 (205)
.++
T Consensus 242 ~~R 244 (323)
T PRK07094 242 LLR 244 (323)
T ss_pred HHH
Confidence 544
No 55
>PLN02389 biotin synthase
Probab=98.39 E-value=2.1e-05 Score=70.07 Aligned_cols=139 Identities=13% Similarity=0.195 Sum_probs=100.2
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||. .++.+.++++.+|+.++ .++ .|+|.. ..+++|.++|++ .+..++++ .++.++++.+. .++++
T Consensus 147 ~e~~-~~e~i~eiir~ik~~~l-----~i~-~s~G~l~~E~l~~LkeAGld-~~~~~LeT-s~~~y~~i~~~---~s~e~ 214 (379)
T PLN02389 147 GRKT-NFNQILEYVKEIRGMGM-----EVC-CTLGMLEKEQAAQLKEAGLT-AYNHNLDT-SREYYPNVITT---RSYDD 214 (379)
T ss_pred CChh-HHHHHHHHHHHHhcCCc-----EEE-ECCCCCCHHHHHHHHHcCCC-EEEeeecC-ChHHhCCcCCC---CCHHH
Confidence 3444 36889999999986555 465 467876 468999999985 89999999 57888888753 37899
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecC---CCCCCC---CccCCcHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFN---PIGSVS---QFRTSSDDKVSSFQK 153 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~---~~g~~~---~~~~~~~e~l~~~~~ 153 (205)
.++.++.+.+ .| +.+..-+|-|.+++.+++.+.+.+++.+...++.+|++ |+. +. +.++++.++..++..
T Consensus 215 rl~ti~~a~~-~G--i~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~-GTpL~~~~~~s~~e~lr~iA 290 (379)
T PLN02389 215 RLETLEAVRE-AG--ISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVK-GTPLEDQKPVEIWEMVRMIA 290 (379)
T ss_pred HHHHHHHHHH-cC--CeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecC-CCcCCCCCCCCHHHHHHHHH
Confidence 9999986544 55 45666689999999999999999999885334444444 442 33 234577777666655
Q ss_pred HHH
Q 028700 154 ILR 156 (205)
Q Consensus 154 ~l~ 156 (205)
+++
T Consensus 291 i~R 293 (379)
T PLN02389 291 TAR 293 (379)
T ss_pred HHH
Confidence 554
No 56
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.35 E-value=9.3e-06 Score=64.37 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=80.9
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|||++-.+.+++++..|-+. ...++|||.. +.++++...- .+.+.+|+|..||+.|.+||+.+..+
T Consensus 100 ~EP~l~~EHvlevIeLl~~~-------tFvlETNG~~~g~drslv~el~nr~-nv~vRVsvKG~dpesF~kIT~asp~~- 170 (228)
T COG5014 100 AEPILGREHVLEVIELLVNN-------TFVLETNGLMFGFDRSLVDELVNRL-NVLVRVSVKGWDPESFEKITGASPEY- 170 (228)
T ss_pred CCccccHHHHHHHHHhccCc-------eEEEEeCCeEEecCHHHHHHHhcCC-ceEEEEEecCCCHHHHHHHhcCChHH-
Confidence 79999999999999999654 7889999975 3577777644 36788999999999999999887665
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
+..-++.++.+.. .|.+++..+| -+|-- ++-.++|+.-+.+.+
T Consensus 171 F~~QL~aLr~L~~-~g~rf~pA~~--~~f~~-Ed~~k~Lak~Lgehp 213 (228)
T COG5014 171 FRYQLKALRHLHG-KGHRFWPAVV--YDFFR-EDGLKELAKRLGEHP 213 (228)
T ss_pred HHHHHHHHHHHHh-cCceeeehhh--hccch-hhhHHHHHHHhccCC
Confidence 7667888885544 5666776655 34422 333455877776653
No 57
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.30 E-value=2.8e-05 Score=69.27 Aligned_cols=124 Identities=12% Similarity=0.144 Sum_probs=87.0
Q ss_pred CccCCCHHHHHHHHHHhhcC---CCCCCCCcEEEEcCCcH--H-HHHHHhhcCCCceEEEeecCCCHHhhhhhcC-CCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGL---PFQVSPKRITVSTVGIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMP-AARA 74 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~---~i~~~~~~~~v~T~G~~--~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~-~~~~ 74 (205)
|||||....+.+.+..+.++ +.. .+-++.|||.. + +++-+.+++ +.+-+|||.. ++.|-++-+ .+.+
T Consensus 65 GEPlL~~~~f~~~~~~l~~k~~~~~~---i~~siqTNg~LL~~e~~e~l~~~~--~~IgISiDGp-~eihD~~R~~~~Gk 138 (378)
T COG0641 65 GEPLLAGLDFYRKAVALQQKYANGKT---ISNALQTNGTLLNDEWAEFLAEHD--FLIGISIDGP-EEIHDKYRVTKSGK 138 (378)
T ss_pred CccccchHHHHHHHHHHHHHHhcCCe---eEEEEEEcccccCHHHHHHHHhcC--ceEEEeccCc-hHhccccccCCCCC
Confidence 99999965555555554443 332 25679999986 3 566666665 5788999998 777777643 2345
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
.+++.|+++++.+.+ ++..+.+.+++-+ ++-++..++.+|+...+ ..+.++|..+-+
T Consensus 139 gTfd~i~~~i~~L~~-~~v~~~~~~vv~~---~n~~~~~ei~~~l~~~g~~~i~fip~~~~~ 196 (378)
T COG0641 139 GTFDRVMKGLELLQA-HGVDFNTLTVVNR---QNVLHPEEIYHFLKSEGSKFIQFIPLVESD 196 (378)
T ss_pred ccHHHHHHHHHHHHH-cCCcEEEEEEEch---hHhhCHHHHHHHHHHcccceEEEEecccCC
Confidence 589999999996655 6767777777322 34557889999998887 468888887755
No 58
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.29 E-value=7e-06 Score=73.35 Aligned_cols=118 Identities=18% Similarity=0.281 Sum_probs=89.4
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|||++. +.+.++++..+++|+ .|+.+-|||.. ...++|..+++ -.|.+|.+.++++.+.+. -+.
T Consensus 119 GEPTvr-~DL~eiv~~a~e~g~----~hVqinTnGirlA~~~~~~~~l~~ag~-~tvYlsFDG~~e~~~~~~-----~~e 187 (475)
T COG1964 119 GEPTLR-DDLIEIIKIAREEGY----DHVQLNTNGIRLAFDPEYVKKLREAGV-NTVYLSFDGVTPKTNWKN-----HWE 187 (475)
T ss_pred CCccch-hhHHHHHHHHhhcCc----cEEEEccCceeeccCHHHHHHHHhcCC-cEEEEecCCCCCCchhhH-----hhh
Confidence 999999 669999999999877 39999999974 25788888886 488999999999998886 223
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--c-eEEEeecCCCC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIG 135 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~-~v~lip~~~~g 135 (205)
+...+++.+ +.....|.+=-.|+.|+||. ++.++++|....- + -||+-|+-=.|
T Consensus 188 Ik~alen~r---~~g~~svVLVptl~rgvNd~--~lG~iirfa~~n~dvVrgVnfQPVsltG 244 (475)
T COG1964 188 IKQALENCR---KAGLPSVVLVPTLIRGVNDH--ELGAIIRFALNNIDVVRGVNFQPVSLTG 244 (475)
T ss_pred hHHHHHHHH---hcCCCcEEEEeehhcccChH--HHHHHHHHHHhccccccccceEEEEEec
Confidence 333455544 43324466666779999998 7899999998542 2 47777776555
No 59
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.29 E-value=2.8e-05 Score=64.99 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=57.5
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
||||+|. .+.++++.+++.|+ +++++|||..+. +.++.. | .+.+|+|..++.. . ..+++..
T Consensus 81 GEPll~~-~l~~li~~l~~~g~-----~v~leTNGtl~~--~~l~~~-d-~v~vs~K~~~sg~-------~--~~~~~~~ 141 (238)
T TIGR03365 81 GNPALQK-PLGELIDLGKAKGY-----RFALETQGSVWQ--DWFRDL-D-DLTLSPKPPSSGM-------E--TDWQALD 141 (238)
T ss_pred CchhhhH-hHHHHHHHHHHCCC-----CEEEECCCCCcH--HHHhhC-C-EEEEeCCCCCCCC-------C--CcHHHHH
Confidence 9999994 79999999998887 899999998742 123333 3 6889999887622 1 1355666
Q ss_pred HHHHHHHHhcCCcEEEEEEEe
Q 028700 82 NALKEYQKNSQQKIFIEYIML 102 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lI 102 (205)
+.++.+.+ +.++.+.+++-
T Consensus 142 ~~ik~l~~--~~~~~vK~Vv~ 160 (238)
T TIGR03365 142 DCIERLDD--GPQTSLKVVVF 160 (238)
T ss_pred HHHHHhhh--cCceEEEEEEC
Confidence 66664433 46889998866
No 60
>PRK08508 biotin synthase; Provisional
Probab=98.28 E-value=3.7e-05 Score=65.72 Aligned_cols=149 Identities=11% Similarity=0.058 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITV-STVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
..+.+.++++.+|+.+. ++.+ .++|.. ..+++|.+++.+ .+..++++. ++.++++.+ ..+++++++.
T Consensus 73 ~~e~~~ei~~~ik~~~p-----~l~i~~s~G~~~~e~l~~Lk~aGld-~~~~~lEt~-~~~~~~i~~---~~~~~~~l~~ 142 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVP-----GLHLIACNGTASVEQLKELKKAGIF-SYNHNLETS-KEFFPKICT---THTWEERFQT 142 (279)
T ss_pred cHHHHHHHHHHHHhhCC-----CcEEEecCCCCCHHHHHHHHHcCCC-EEcccccch-HHHhcCCCC---CCCHHHHHHH
Confidence 35788899999987643 3443 467775 468999899874 888999984 566777643 3468899998
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCC--CCCc--cCCcHHHHHHHHHHHHhcC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGS--VSQF--RTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~--~~~~--~~~~~e~l~~~~~~l~~~~ 159 (205)
++.+ ++.| +.+...+|.|.++++|++.+++.++++++.. -+|+|.+.+ +..+ .+++.++..+...+++ -.
T Consensus 143 i~~a-~~~G--i~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~--svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~R-l~ 216 (279)
T PRK08508 143 CENA-KEAG--LGLCSGGIFGLGESWEDRISFLKSLASLSPH--STPINFFIPNPALPLKAPTLSADEALEIVRLAK-EA 216 (279)
T ss_pred HHHH-HHcC--CeecceeEEecCCCHHHHHHHHHHHHcCCCC--EEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHH-HH
Confidence 8855 3345 6778889999999999999999999998743 345555432 2222 3456777777766665 33
Q ss_pred CceEEecccccc
Q 028700 160 NIRTTVRKQMGQ 171 (205)
Q Consensus 160 Gi~~~i~~~~g~ 171 (205)
=.+..++-+.|+
T Consensus 217 lp~~~i~~~~gr 228 (279)
T PRK08508 217 LPNARLMVAGGR 228 (279)
T ss_pred CCCceeeecCCh
Confidence 335556655554
No 61
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.23 E-value=1.1e-06 Score=68.65 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=52.1
Q ss_pred CccCCCH--HHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHH--HH-----HHHhhcCCCceEEEeecCCCHHh--hhhhc
Q 028700 2 GEPLNNY--AALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AI-----NKFHSDLPGLNLAVSLHAPVQDV--RCQIM 69 (205)
Q Consensus 2 GEPllq~--~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~--~~-----~~l~~~~~~~~l~~slk~~d~~~--~~~i~ 69 (205)
||||+|+ +++.++++.+|+. ++ ++++.|+|+.. .+ ++++++. ++.+|.++++++. |+.++
T Consensus 72 GEPllq~~~~~l~~ll~~~k~~~~~-----~~~~~~tG~~~~~~~~~~~~~~~l~~~---D~liDgk~~~~~~~~~~~~~ 143 (154)
T TIGR02491 72 GDPLYPRNVEELIELVKKIKAEFPE-----KDIWLWTGYTWEEILEDEKHLEVLKYI---DVLVDGKFELSKKDLKLKFR 143 (154)
T ss_pred hhhCCCCCHHHHHHHHHHHHHhCCC-----CCEEEeeCccHHHHhcchhHHHHHhhC---CEEEechhhhhcccCCCCCC
Confidence 9999976 9999999999976 44 78889999873 22 2677764 4789999999875 77889
Q ss_pred CCCCC
Q 028700 70 PAARA 74 (205)
Q Consensus 70 ~~~~~ 74 (205)
|.+|.
T Consensus 144 gs~Nq 148 (154)
T TIGR02491 144 GSSNQ 148 (154)
T ss_pred CCcCe
Confidence 98765
No 62
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=98.19 E-value=0.00021 Score=61.01 Aligned_cols=118 Identities=13% Similarity=0.149 Sum_probs=84.9
Q ss_pred cEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCC
Q 028700 29 RITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN 106 (205)
Q Consensus 29 ~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN 106 (205)
++++++ |.. ..++.+.+++.+ .+.+++. .+++.++++.+ ..+++..++.++.+.+ .|.++... +|.|.+
T Consensus 113 ~~~~~~-g~~~~e~l~~Lk~aG~~-~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~~l~~-~Gi~v~~~--~i~Gl~ 183 (296)
T TIGR00433 113 KTCATL-GLLDPEQAKRLKDAGLD-YYNHNLD-TSQEFYSNIIS---THTYDDRVDTLENAKK-AGLKVCSG--GIFGLG 183 (296)
T ss_pred eEEecC-CCCCHHHHHHHHHcCCC-EEEEccc-CCHHHHhhccC---CCCHHHHHHHHHHHHH-cCCEEEEe--EEEeCC
Confidence 566654 554 368888888874 8889999 89999999864 3478899999986544 56555554 566899
Q ss_pred CCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCC---CccCCcHHHHHHHHHHHH
Q 028700 107 DEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 107 Ds~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~---~~~~~~~e~l~~~~~~l~ 156 (205)
++.+++.+++++++.++. .+.+-+++|.. +. ++.+++.++..++...++
T Consensus 184 et~~d~~~~~~~l~~l~~~~i~l~~l~p~~-gT~l~~~~~~s~~~~~~~ia~~r 236 (296)
T TIGR00433 184 ETVEDRIGLALALANLPPESVPINFLVKIK-GTPLADNKELSADDALKTIALAR 236 (296)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeeeeEEcC-CCccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999998874 46666677764 33 355677666655554443
No 63
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=98.18 E-value=0.00021 Score=63.15 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=106.1
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|+ +..+.+.++++.+++. .+. ....++++||+.. +.++.+.+.+. .++.+.+.+.+++.++.+ + +..+
T Consensus 60 GtPs~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv-~risiGvqS~~~~~l~~l-g--R~~~ 134 (360)
T TIGR00539 60 GTPNTLSVEAFERLFESIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGI-NRLSLGVQSFRDDKLLFL-G--RQHS 134 (360)
T ss_pred CchhcCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCC-CEEEEecccCChHHHHHh-C--CCCC
Confidence 8997 5678888888888653 221 2347999999853 46888888887 489999999999999988 3 3457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc-----cCCcHHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF-----RTSSDDKVS 149 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~-----~~~~~e~l~ 149 (205)
.++++++++.+.+ .|-. .+++=+|-|+ +.+.+++.+.++++.+++. ++.+.++.+.+ +..+ ..|++++..
T Consensus 135 ~~~~~~ai~~l~~-~G~~-~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~-gT~~~~~~~~~~~~~~~~ 211 (360)
T TIGR00539 135 AKNIAPAIETALK-SGIE-NISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEP-NTNFEKNAKKLPDDDSCA 211 (360)
T ss_pred HHHHHHHHHHHHH-cCCC-eEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcC-CChhhhhhhcCcCHHHHH
Confidence 8899999985544 4532 3455456665 5788899999999999984 78888888764 4322 135554443
Q ss_pred H----HHHHHHhcCCce
Q 028700 150 S----FQKILRGSYNIR 162 (205)
Q Consensus 150 ~----~~~~l~~~~Gi~ 162 (205)
+ +.+.++ ..|+.
T Consensus 212 ~~~~~~~~~L~-~~Gy~ 227 (360)
T TIGR00539 212 HFDEVVREILE-GFGFK 227 (360)
T ss_pred HHHHHHHHHHH-HcCCc
Confidence 3 334566 56753
No 64
>PRK06256 biotin synthase; Validated
Probab=98.18 E-value=0.00012 Score=63.98 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 86 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~ 86 (205)
+.+.++++.+++. .++ +++++ .|.. ..+++|.+++.+ .+.+.+.+ +++.++++.+. .+.++.++.++.
T Consensus 126 ~~~~e~i~~i~~~-~~i---~~~~~-~g~l~~e~l~~LkeaG~~-~v~~~lEt-s~~~~~~i~~~---~t~~~~i~~i~~ 195 (336)
T PRK06256 126 DQVVEAVKAIKEE-TDL---EICAC-LGLLTEEQAERLKEAGVD-RYNHNLET-SRSYFPNVVTT---HTYEDRIDTCEM 195 (336)
T ss_pred HHHHHHHHHHHhc-CCC---cEEec-CCcCCHHHHHHHHHhCCC-EEecCCcc-CHHHHhhcCCC---CCHHHHHHHHHH
Confidence 5788889888875 211 44443 4554 368888888874 78899999 99999998653 468889999985
Q ss_pred HHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCC---ccCCcHHHHHHHHHHHHhcCCce
Q 028700 87 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ---FRTSSDDKVSSFQKILRGSYNIR 162 (205)
Q Consensus 87 ~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~---~~~~~~e~l~~~~~~l~~~~Gi~ 162 (205)
+.+ .|.++ ..-+|-|.+++.+++.+++.+++.++. .|.+-+|+|.. +.. ..+++.++..++...++ -.-.+
T Consensus 196 a~~-~Gi~v--~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~p-GT~l~~~~~~~~~e~l~~ia~~R-l~~p~ 270 (336)
T PRK06256 196 VKA-AGIEP--CSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIP-GTPLENHPELTPLECLKTIAIFR-LINPD 270 (336)
T ss_pred HHH-cCCee--ccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCC-CCCCCCCCCCCHHHHHHHHHHHH-HHCCC
Confidence 544 56554 445666899999999999999998874 46666677753 433 34567777776666655 33234
Q ss_pred EEeccccc
Q 028700 163 TTVRKQMG 170 (205)
Q Consensus 163 ~~i~~~~g 170 (205)
..|+-+-|
T Consensus 271 ~~I~~~~g 278 (336)
T PRK06256 271 KEIRIAGG 278 (336)
T ss_pred CeeEecCc
Confidence 44444433
No 65
>PRK15108 biotin synthase; Provisional
Probab=98.13 E-value=0.00019 Score=63.20 Aligned_cols=140 Identities=10% Similarity=0.105 Sum_probs=99.5
Q ss_pred cc-CCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 3 EP-LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 3 EP-llq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
+| ...++.+.++++.+|+.++ .+++ |+|.. ..+++|.+.|+| .+++++++ +++.++++++. .++++
T Consensus 104 ~p~~~~~e~i~~~i~~ik~~~i-----~v~~-s~G~ls~e~l~~LkeAGld-~~n~~leT-~p~~f~~I~~~---~~~~~ 172 (345)
T PRK15108 104 NPHERDMPYLEQMVQGVKAMGL-----ETCM-TLGTLSESQAQRLANAGLD-YYNHNLDT-SPEFYGNIITT---RTYQE 172 (345)
T ss_pred CCCcchHHHHHHHHHHHHhCCC-----EEEE-eCCcCCHHHHHHHHHcCCC-EEeecccc-ChHhcCCCCCC---CCHHH
Confidence 55 3457899999999997655 5664 58865 369999999985 89999999 89999999753 37889
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCC--CCCCc---cCCcHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG--SVSQF---RTSSDDKVSSFQKI 154 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g--~~~~~---~~~~~e~l~~~~~~ 154 (205)
.++.++.+.+ .|. .+..-+|=|..++.+++-+++..++.+...++.+|++.+- ++..+ .+.+..+..++..+
T Consensus 173 rl~~i~~a~~-~G~--~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi 249 (345)
T PRK15108 173 RLDTLEKVRD-AGI--KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAV 249 (345)
T ss_pred HHHHHHHHHH-cCC--ceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 9999986544 554 5566677789999999999999999885333345544331 23333 23455555555555
Q ss_pred HH
Q 028700 155 LR 156 (205)
Q Consensus 155 l~ 156 (205)
++
T Consensus 250 ~R 251 (345)
T PRK15108 250 AR 251 (345)
T ss_pred HH
Confidence 44
No 66
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.09 E-value=0.00018 Score=61.39 Aligned_cols=148 Identities=11% Similarity=0.175 Sum_probs=109.3
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEE-EeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||+-+..+++++++.+... + .+.-.||++. +..-++++-.. ++. -|+|-.|++.-.++-.+.+-+ +=
T Consensus 174 g~Ptp~lp~Ile~l~~~~~~-i-----PvvwNSnmY~s~E~l~lL~gvV--DiyL~DfKYgNdeca~kySkvp~Y~--eV 243 (335)
T COG1313 174 GDPTPHLPFILEALRYASEN-I-----PVVWNSNMYMSEETLKLLDGVV--DIYLPDFKYGNDECAEKYSKVPNYW--EV 243 (335)
T ss_pred CCCCCchHHHHHHHHHHhcC-C-----CEEEecCCccCHHHHHHhhccc--eeeecccccCCHHHHHHhhcCCchH--HH
Confidence 89999999999999999765 4 5777899987 35566666554 354 889999999999998887653 33
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC-C--ceEEEe-ecCCCCCCCCc----cCCcHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-Q--VVVNLI-PFNPIGSVSQF----RTSSDDKVSSF 151 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~-~--~~v~li-p~~~~g~~~~~----~~~~~e~l~~~ 151 (205)
+.+++....+ ..+.+.||..++||-=+. =-+.+++|+++. + ..||++ +|+|.-...+| ++++.++++++
T Consensus 244 v~rn~~~~~~-~~g~~iiRHLVlPghlec--CTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a 320 (335)
T COG1313 244 VTRNILEAKE-QVGGLIIRHLVLPGHLEC--CTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKA 320 (335)
T ss_pred HHHHHHHHHH-hcCceEEEEEecCCchhh--ccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHH
Confidence 5666664444 344799999999995332 146788898875 3 466665 67774222334 46889999999
Q ss_pred HHHHHhcCCceE
Q 028700 152 QKILRGSYNIRT 163 (205)
Q Consensus 152 ~~~l~~~~Gi~~ 163 (205)
.++.+ +.|+.-
T Consensus 321 ~~~a~-~~gl~~ 331 (335)
T COG1313 321 LEYAE-KLGLTN 331 (335)
T ss_pred HHHHH-HcCCce
Confidence 99998 788754
No 67
>PRK05660 HemN family oxidoreductase; Provisional
Probab=98.07 E-value=0.00045 Score=61.50 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=106.2
Q ss_pred CccCC-CHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLN-NYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPll-q~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|++ ..+.+.++++.+++. ++. ....++++||+.. +.++.+.+.+. .++.+.+.+.+++.++.+-+ ..+
T Consensus 67 GtPs~l~~~~l~~ll~~l~~~~~~~-~~~eit~e~np~~l~~e~l~~Lk~~Gv-~risiGvqS~~~~~L~~l~r---~~~ 141 (378)
T PRK05660 67 GTPSLFSAEAIQRLLDGVRARLPFA-PDAEITMEANPGTVEADRFVGYQRAGV-NRISIGVQSFSEEKLKRLGR---IHG 141 (378)
T ss_pred CccccCCHHHHHHHHHHHHHhCCCC-CCcEEEEEeCcCcCCHHHHHHHHHcCC-CEEEeccCcCCHHHHHHhCC---CCC
Confidence 89996 678899999998864 221 2347999999643 47888888887 48999999999999999854 357
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc-----cCCcHHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF-----RTSSDDKVS 149 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~-----~~~~~e~l~ 149 (205)
.+++++.++.+.+ .|-. .+++-+|-|+. .+.+++.+.++++..++. ++.+-++.+.. +..+ ..|++++..
T Consensus 142 ~~~~~~ai~~~~~-~G~~-~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~-gT~l~~~~~~~~~~~~~~ 218 (378)
T PRK05660 142 PDEAKRAAKLAQG-LGLR-SFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEP-NTLFGSRPPVLPDDDALW 218 (378)
T ss_pred HHHHHHHHHHHHH-cCCC-eEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEecc-CCcccccCCCCcCHHHHH
Confidence 8899999885544 4533 35666776654 678899999999999874 67777776542 3221 235544333
Q ss_pred H----HHHHHHhcCCc
Q 028700 150 S----FQKILRGSYNI 161 (205)
Q Consensus 150 ~----~~~~l~~~~Gi 161 (205)
+ ..+.++ ..|+
T Consensus 219 ~~~~~~~~~L~-~~Gy 233 (378)
T PRK05660 219 DIFEQGHQLLT-AAGY 233 (378)
T ss_pred HHHHHHHHHHH-HcCC
Confidence 3 345566 5775
No 68
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=98.01 E-value=0.00056 Score=60.26 Aligned_cols=151 Identities=11% Similarity=0.109 Sum_probs=105.1
Q ss_pred CccC-CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPL-NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|+|+ ++++.+.+++..+++. +. ....+++++|... +.++.+.+.+.. ++.+.+.+.+++..+.+- +..+.
T Consensus 60 GTPs~l~~~~l~~ll~~i~~~-~~-~~~eitiE~nP~~~~~e~l~~l~~~Gvn-RiSiGvQS~~~~~L~~lg---R~~~~ 133 (350)
T PRK08446 60 GTPSTVSAKFYEPIFEIISPY-LS-KDCEITTEANPNSATKAWLKGMKNLGVN-RISFGVQSFNEDKLKFLG---RIHSQ 133 (350)
T ss_pred CccccCCHHHHHHHHHHHHHh-cC-CCceEEEEeCCCCCCHHHHHHHHHcCCC-EEEEecccCCHHHHHHcC---CCCCH
Confidence 7996 6888888888888764 21 1236999998853 578888888874 899999999999988873 34578
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc------cCCcHHHHH
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF------RTSSDDKVS 149 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~------~~~~~e~l~ 149 (205)
+++.+.++.+.+ .|-. .|++=+|-|+- .+.+++.+.++++..++. ++.+-++.+.. +..+ .+.+++...
T Consensus 134 ~~~~~ai~~lr~-~g~~-~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~-gT~l~~~~~~~~~~~~~~~ 210 (350)
T PRK08446 134 KQIIKAIENAKK-AGFE-NISIDLIYDTPLDNKKLLKEELKLAKELPINHLSAYSLTIEE-NTPFFEKNHKKKDDENLAK 210 (350)
T ss_pred HHHHHHHHHHHH-cCCC-EEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeccceecC-CChhHHhhhcCCCHHHHHH
Confidence 899999885544 4432 34444564432 578899999999998874 67777777653 3322 123344555
Q ss_pred HHHHHHHhcCCce
Q 028700 150 SFQKILRGSYNIR 162 (205)
Q Consensus 150 ~~~~~l~~~~Gi~ 162 (205)
.+.+.+. ..|..
T Consensus 211 ~~~~~l~-~~Gy~ 222 (350)
T PRK08446 211 FFIEQLE-ELGFK 222 (350)
T ss_pred HHHHHHH-HCCCc
Confidence 5677788 68863
No 69
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=98.01 E-value=0.00018 Score=63.84 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=102.1
Q ss_pred CccC--CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCc-HHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GEPL--NNYAALVEAVRIMTGLPFQVSPKRITVSTVGI-VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GEPl--lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~-~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
||+. ...+.+.++++.+++.. + .+.++.+-. ...+++|.++|++ .+.+++.+.|++.++++++...+..++
T Consensus 128 Ge~p~~~~~e~l~eii~~Ik~~~---p--~i~Iei~~lt~e~~~~Lk~aGv~-r~~i~lET~~~~~y~~i~~~g~~h~~~ 201 (366)
T TIGR02351 128 GESEKAAGVEYIAEAIKLAREYF---S--SLAIEVQPLNEEEYKKLVEAGLD-GVTVYQETYNEKKYKKHHLAGKKKDFR 201 (366)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC---C--ccccccccCCHHHHHHHHHcCCC-EEEEEeecCCHHHHHhcCcCCCCCCHH
Confidence 5533 45788999999998751 1 233333322 2478999999985 999999999999999998766677899
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-------ceEEEeecCCCCCCCCc---cCCcHHHH
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-------VVVNLIPFNPIGSVSQF---RTSSDDKV 148 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-------~~v~lip~~~~g~~~~~---~~~~~e~l 148 (205)
+.++.++.+.+ .|-+ .+.+-+|-|++++.++.-.++..++.+. ..|.+.-++|+. + .+ .+.++.++
T Consensus 202 ~rl~~i~~a~~-aG~~-~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~-g-~~~~~~~l~~~~~ 277 (366)
T TIGR02351 202 YRLNTPERAAK-AGMR-KIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCT-N-GLKPKVIVTDREL 277 (366)
T ss_pred HHHHHHHHHHH-cCCC-eeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCC-C-CCCCCCcCCHHHH
Confidence 99999986655 4533 2666899999999998888887766553 235555566663 3 34 34556666
Q ss_pred HHHHHHHH
Q 028700 149 SSFQKILR 156 (205)
Q Consensus 149 ~~~~~~l~ 156 (205)
.++...++
T Consensus 278 ~~~i~~~R 285 (366)
T TIGR02351 278 VQIICAYR 285 (366)
T ss_pred HHHHHHHH
Confidence 66655554
No 70
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=97.96 E-value=0.0012 Score=58.39 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=104.9
Q ss_pred CccCC-CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPLN-NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPll-q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|+|++ ..+.+..+++.++..++. ....++++||... ..++.+.+.+. ..+.+.+.+.+++.++.+- +..+.
T Consensus 60 Gtps~l~~~~l~~L~~~i~~~~~~-~~~eitie~~p~~~t~e~l~~l~~~G~-~rvsiGvqS~~d~~L~~l~---R~~~~ 134 (374)
T PRK05799 60 GTPTYLSLEALEILKETIKKLNKK-EDLEFTVEGNPGTFTEEKLKILKSMGV-NRLSIGLQAWQNSLLKYLG---RIHTF 134 (374)
T ss_pred CcccCCCHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCcCCHHHHHHHHHcCC-CEEEEECccCCHHHHHHcC---CCCCH
Confidence 78984 777777777777643321 2236899998742 46888888886 4899999999999998873 34578
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCC---------CccCCcHH
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVS---------QFRTSSDD 146 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~---------~~~~~~~e 146 (205)
++++++++.+.+ .|.+ .+++=+|-|+ +++.+++.+.++++.+++ .+|.+-++.+.. +. .+..|+++
T Consensus 135 ~~~~~ai~~l~~-~g~~-~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~p-gT~l~~~~~~g~~~~~~~~ 211 (374)
T PRK05799 135 EEFLENYKLARK-LGFN-NINVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEE-GTPFYNLYENGKLKLPDEE 211 (374)
T ss_pred HHHHHHHHHHHH-cCCC-cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecC-CCHHHHHHhcCCCCCCChH
Confidence 899999885544 4432 3455677776 688999999999999987 467777776652 32 23456655
Q ss_pred HHHH----HHHHHHhcCCce
Q 028700 147 KVSS----FQKILRGSYNIR 162 (205)
Q Consensus 147 ~l~~----~~~~l~~~~Gi~ 162 (205)
+... ..+.+. +.|+.
T Consensus 212 ~~~~~~~~~~~~l~-~~Gy~ 230 (374)
T PRK05799 212 EEREMYHYTIEFLK-EKGYH 230 (374)
T ss_pred HHHHHHHHHHHHHH-HcCCc
Confidence 5433 345566 57763
No 71
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=97.94 E-value=0.001 Score=60.55 Aligned_cols=153 Identities=9% Similarity=0.072 Sum_probs=104.7
Q ss_pred CccCC-CHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLN-NYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPll-q~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|++ +.+.+.++++.+++. ++ .....++++|++.. +.++.+.+.+. ..+.+.+.+.+++.++.+-+ ..+
T Consensus 111 GtPs~l~~~~l~~ll~~l~~~~~~-~~~~e~tie~np~~lt~e~l~~l~~aG~-~risiGvqS~~~~~L~~l~r---~~~ 185 (453)
T PRK09249 111 GTPTFLSPEQLRRLMALLREHFNF-APDAEISIEIDPRELDLEMLDALRELGF-NRLSLGVQDFDPEVQKAVNR---IQP 185 (453)
T ss_pred cccccCCHHHHHHHHHHHHHhCCC-CCCCEEEEEecCCcCCHHHHHHHHHcCC-CEEEECCCCCCHHHHHHhCC---CCC
Confidence 89995 788999999999875 33 12347999999743 47888888886 48999999999999988754 357
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecC--CCCC--C---CCccCCcHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFN--PIGS--V---SQFRTSSDDK 147 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~--~~g~--~---~~~~~~~~e~ 147 (205)
.+++++.++.+.+ .|.. .+.+-+|-|+ +++.+++++.++++..++. ++.+.+|. |.+. . .+...|+.++
T Consensus 186 ~~~~~~ai~~l~~-~G~~-~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~ 263 (453)
T PRK09249 186 FEFTFALVEAARE-LGFT-SINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEE 263 (453)
T ss_pred HHHHHHHHHHHHH-cCCC-cEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcccCCCHHH
Confidence 8888888885544 4531 3444455442 3678899999999999874 67777776 2210 0 1223456655
Q ss_pred HHHH----HHHHHhcCCce
Q 028700 148 VSSF----QKILRGSYNIR 162 (205)
Q Consensus 148 l~~~----~~~l~~~~Gi~ 162 (205)
..++ .+.+. ..|+.
T Consensus 264 ~~~~~~~~~~~L~-~~Gy~ 281 (453)
T PRK09249 264 KLAILQQTIETLT-EAGYQ 281 (453)
T ss_pred HHHHHHHHHHHHH-HCCCE
Confidence 4443 45566 57764
No 72
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=97.93 E-value=0.00061 Score=61.35 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=84.3
Q ss_pred CccCCCHH-HHHHHHHHhhcC-CCCCCCCcEEEEcC-----CcH--H-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCC
Q 028700 2 GEPLNNYA-ALVEAVRIMTGL-PFQVSPKRITVSTV-----GIV--H-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 71 (205)
Q Consensus 2 GEPllq~~-~l~~~l~~lk~~-~i~~~~~~~~v~T~-----G~~--~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~ 71 (205)
||||+..+ .+..+++.+++. ++ ..+.+-|+ +.. + .++.|..+.. ..+.+++++.. |.
T Consensus 164 GDPLll~d~~L~~iL~~L~~IphV----~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~-~~v~~h~nhp~-Ei------- 230 (417)
T TIGR03820 164 GDPLLLSDDYLDWILTELRAIPHV----EVIRIGTRVPVVLPQRITDELVAILKKHHP-VWLNTHFNHPR-EI------- 230 (417)
T ss_pred CccccCChHHHHHHHHHHhhcCCC----ceEEEeeccccccccccCHHHHHHHHhcCC-eEEEEeCCChH-hC-------
Confidence 99998756 445557888763 22 24677777 321 2 3455555553 46778888863 32
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCce-EEEeecCCCCCCCCccCCcHHHHHH
Q 028700 72 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSS 150 (205)
Q Consensus 72 ~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~-v~lip~~~~g~~~~~~~~~~e~l~~ 150 (205)
.+...++++.+.+ .|.++-...||+.|+||+.+-+.+|.+-+-..++. +=+....+......|..|- ++..+
T Consensus 231 -----t~~a~~Al~~L~~-aGI~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~-~~g~~ 303 (417)
T TIGR03820 231 -----TASSKKALAKLAD-AGIPLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPV-GKGIE 303 (417)
T ss_pred -----hHHHHHHHHHHHH-cCCEEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcH-HHHHH
Confidence 2567888876555 78999999999999999998888887777766531 1122333443234455554 44444
Q ss_pred HHHHHH
Q 028700 151 FQKILR 156 (205)
Q Consensus 151 ~~~~l~ 156 (205)
+.+.++
T Consensus 304 I~~~lr 309 (417)
T TIGR03820 304 IIESLI 309 (417)
T ss_pred HHHHHH
Confidence 444443
No 73
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=97.89 E-value=0.0019 Score=57.31 Aligned_cols=125 Identities=10% Similarity=0.073 Sum_probs=91.1
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|.|+ ++.+.+.++++.+++. ++. +...++++++... +.++.+.+.+. .++.+.+.+.+++..+.+- +..+
T Consensus 68 GTPs~l~~~~l~~ll~~i~~~~~~~-~~~e~t~e~~p~~i~~e~l~~l~~~G~-~rvslGvQS~~~~~L~~l~---R~~s 142 (375)
T PRK05628 68 GTPSLLGAEGLARVLDAVRDTFGLA-PGAEVTTEANPESTSPEFFAALRAAGF-TRVSLGMQSAAPHVLAVLD---RTHT 142 (375)
T ss_pred CccccCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCC-CEEEEecccCCHHHHHHcC---CCCC
Confidence 7887 5778888888888764 442 2336888887642 46888888886 4899999999999988864 3457
Q ss_pred HHHHHHHHHHHHHhcCCc-EEEEEEE-eCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCC
Q 028700 77 LEKLMNALKEYQKNSQQK-IFIEYIM-LDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 134 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~-V~ir~~l-IpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~ 134 (205)
.+++++.++.+.+ .|.+ |.+.+.+ +|| .+.+++.+.++++..++. ++.+.++...
T Consensus 143 ~~~~~~a~~~l~~-~g~~~v~~dli~GlPg--qt~~~~~~tl~~~~~l~~~~i~~y~l~~~ 200 (375)
T PRK05628 143 PGRAVAAAREARA-AGFEHVNLDLIYGTPG--ESDDDWRASLDAALEAGVDHVSAYALIVE 200 (375)
T ss_pred HHHHHHHHHHHHH-cCCCcEEEEEeccCCC--CCHHHHHHHHHHHHhcCCCEEEeeeeecC
Confidence 8899998885544 4544 5555433 355 577799999999999874 6777777754
No 74
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=97.85 E-value=0.0024 Score=56.66 Aligned_cols=152 Identities=8% Similarity=0.047 Sum_probs=104.5
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|+ ++.+.+.++++.+++. ++. +...++++++... ..++.+.+.+. ..+.+.+.+.+++.++.+-+ ..+
T Consensus 60 Gtpt~l~~~~l~~ll~~i~~~~~~~-~~~eit~e~~p~~l~~e~l~~l~~~G~-~rvsiGvqS~~~~~l~~l~r---~~~ 134 (377)
T PRK08599 60 GTPTALSAEQLERLLTAIHRNLPLS-GLEEFTFEANPGDLTKEKLQVLKDSGV-NRISLGVQTFNDELLKKIGR---THN 134 (377)
T ss_pred CCcccCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCC-CEEEEecccCCHHHHHHcCC---CCC
Confidence 7898 5788999999999875 331 1236889888632 46888888886 48999999999999998743 457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCC---------CccCCcH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS---------QFRTSSD 145 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~---------~~~~~~~ 145 (205)
.+++.+.++.+.+ .|.+ .+.+=+|=|+ +++.+++.+.++++.+++. .+.+-++.+.. +. .+..|+.
T Consensus 135 ~~~~~~~i~~l~~-~g~~-~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~p-gT~~~~~~~~g~~~~~~~ 211 (377)
T PRK08599 135 EEDVYEAIANAKK-AGFD-NISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEP-KTVFYNLMRKGKLRLPGE 211 (377)
T ss_pred HHHHHHHHHHHHH-cCCC-cEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecC-CChhHHHHhcCCCCCCCH
Confidence 8899999885544 4533 2344456554 6888999999999999874 56666666542 22 2233444
Q ss_pred HHHH----HHHHHHHhcCCce
Q 028700 146 DKVS----SFQKILRGSYNIR 162 (205)
Q Consensus 146 e~l~----~~~~~l~~~~Gi~ 162 (205)
+... .+.+.+. ..|+.
T Consensus 212 ~~~~~~~~~~~~~l~-~~Gy~ 231 (377)
T PRK08599 212 DLEAEMYEYLMDEME-AHGFH 231 (377)
T ss_pred HHHHHHHHHHHHHHH-HcCCc
Confidence 4433 3455666 57764
No 75
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=97.74 E-value=0.0029 Score=57.68 Aligned_cols=123 Identities=10% Similarity=0.179 Sum_probs=90.2
Q ss_pred CccCC-CHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLN-NYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPll-q~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|++ +.+.+.++++.+++. .+. ....++++|++.. +.++.+.+.+. ..+.+.+.+.+++.++.+-+ ..+
T Consensus 111 GtP~~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~l~~e~l~~lk~~G~-~risiGvqS~~~~~l~~l~r---~~~ 185 (455)
T TIGR00538 111 GTPTYLSPEQISRLMKLIRENFPFN-ADAEISIEIDPRYITKDVIDALRDEGF-NRLSFGVQDFNKEVQQAVNR---IQP 185 (455)
T ss_pred CCcCCCCHHHHHHHHHHHHHhCCCC-CCCeEEEEeccCcCCHHHHHHHHHcCC-CEEEEcCCCCCHHHHHHhCC---CCC
Confidence 88984 889999999999875 221 1236899998743 46888888886 48999999999999998754 346
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeec
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPF 131 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~ 131 (205)
.+.+++.++.+.+ .|.+ .+++-+|-|+ .++.+++.+.++++..++. +|.+.+|
T Consensus 186 ~~~~~~ai~~l~~-~G~~-~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L 240 (455)
T TIGR00538 186 EEMIFELMNHARE-AGFT-SINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNY 240 (455)
T ss_pred HHHHHHHHHHHHh-cCCC-cEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 7888888875544 4533 2444455442 2678899999999999974 6777666
No 76
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=97.72 E-value=0.0049 Score=55.81 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=104.5
Q ss_pred CccCC-CHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLN-NYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPll-q~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|++ +.+.+.++++.+++. ++......++++|+... +.++.+.+.+. ..|.+.+.+.+++..+.+-. ..+
T Consensus 100 GTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~-~rvslGvQS~~~~~L~~l~R---~~~ 175 (430)
T PRK08208 100 GTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGV-NRLSIGVQSFHDSELHALHR---PQK 175 (430)
T ss_pred CccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCC-CEEEEecccCCHHHHHHhCC---CCC
Confidence 88975 778888888888754 33211236899998743 46888888886 48999999999999888743 447
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCCCc---cCCcHHH----
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQF---RTSSDDK---- 147 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~~~---~~~~~e~---- 147 (205)
.+++.+.++.+.+ .|.++ +++=+|-| -+++.+++.+.++++.+++ .++.+.|+.... +..+ ..++.++
T Consensus 176 ~~~~~~ai~~l~~-~g~~~-i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~-~T~l~~~~~~~~~~~~~m 252 (430)
T PRK08208 176 RADVHQALEWIRA-AGFPI-LNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRP-LTGLGRRARAWDDQRLSL 252 (430)
T ss_pred HHHHHHHHHHHHH-cCCCe-EEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccC-CCccchhcCCCHHHHHHH
Confidence 8889999885544 55432 44445655 4578899999999999987 478888887653 3322 1233333
Q ss_pred HHHHHHHHHhcCCce
Q 028700 148 VSSFQKILRGSYNIR 162 (205)
Q Consensus 148 l~~~~~~l~~~~Gi~ 162 (205)
.+...+.+. ..|..
T Consensus 253 ~~~~~~~L~-~~Gy~ 266 (430)
T PRK08208 253 YRLARDLLL-EAGYT 266 (430)
T ss_pred HHHHHHHHH-HcCCe
Confidence 233445566 57764
No 77
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.72 E-value=0.00081 Score=59.06 Aligned_cols=144 Identities=13% Similarity=0.138 Sum_probs=98.7
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCcEEE----------EcCCcH--HHHHHHhhcCCCceEE-EeecCCCHHhhhhhc
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKRITV----------STVGIV--HAINKFHSDLPGLNLA-VSLHAPVQDVRCQIM 69 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~~~v----------~T~G~~--~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i~ 69 (205)
+|....+.+.++++.+++.+. ..+++. +|+|.. ..+++|.++|.+ .+. .+..+.+++.+++++
T Consensus 97 ~p~~~~~~~~~i~~~Ik~~~~---~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~-~i~~~~~E~~~~~v~~~i~ 172 (343)
T TIGR03551 97 HPDLDGDFYLDILRAVKEEVP---GMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD-SMPGTAAEILDDEVRKVIC 172 (343)
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcc-cccCcchhhcCHHHHHhcC
Confidence 677788999999999998632 224544 256764 368999999874 665 356778899999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCce----EEEeecC--CCCCCCCc---
Q 028700 70 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN--PIGSVSQF--- 140 (205)
Q Consensus 70 ~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~----v~lip~~--~~g~~~~~--- 140 (205)
+. +.+.++.++.++.+.+ .|. .+..-+|=|...+.++..+.+.++++++.. -.++|++ +-| ..-+
T Consensus 173 ~~--~~~~~~~~~~i~~a~~-~Gi--~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~g-T~l~~~~ 246 (343)
T TIGR03551 173 PD--KLSTAEWIEIIKTAHK-LGI--PTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYN-APLYLKG 246 (343)
T ss_pred CC--CCCHHHHHHHHHHHHH-cCC--cccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCC-Ccccccc
Confidence 64 3467778888875443 564 456666778889999999999999998632 3566765 433 2111
Q ss_pred ---cCCcHHHHHHHHHHHH
Q 028700 141 ---RTSSDDKVSSFQKILR 156 (205)
Q Consensus 141 ---~~~~~e~l~~~~~~l~ 156 (205)
++.+.++..++...++
T Consensus 247 ~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 247 MARPGPTGREDLKVHAIAR 265 (343)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 2346666666655544
No 78
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=97.68 E-value=0.0076 Score=52.10 Aligned_cols=152 Identities=11% Similarity=0.096 Sum_probs=103.7
Q ss_pred CccC-CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--H-HHHH---HhhcCCCceEEEeecCCCHHhhhhhcCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--H-AINK---FHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 74 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~-~~~~---l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~ 74 (205)
|.|+ +..+.+.++++.+++. .....++++|.-.. + .++. +.+.+.+..+.+-+-+.+++..+.+.. .
T Consensus 86 gt~t~l~~~~L~~l~~~i~~~---~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~R---g 159 (302)
T TIGR01212 86 YTNTYAPVEVLKEMYEQALSY---DDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINR---G 159 (302)
T ss_pred CCcCCCCHHHHHHHHHHHhCC---CCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcC---c
Confidence 5666 5678888888888763 12236777764321 2 3333 333343224678899999999998754 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCC---------CCccCC
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV---------SQFRTS 143 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~---------~~~~~~ 143 (205)
.+.+++.++++.+.+ .|. .+.+-+|-|+ .++.+++.+.++++..++. .|.+.++++.. + ..|.++
T Consensus 160 ~t~~~~~~ai~~l~~-~gi--~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~p-gT~L~~~~~~g~~~~~ 235 (302)
T TIGR01212 160 HDFACYVDAVKRARK-RGI--KVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVK-GTKMAKMYEKGELKTL 235 (302)
T ss_pred ChHHHHHHHHHHHHH-cCC--EEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecC-CCHHHHHHHcCCCCCC
Confidence 578889998885544 554 4555677776 7999999999999999974 68888888874 3 235667
Q ss_pred cHHH-HHHHHHHHHhcCCceEE
Q 028700 144 SDDK-VSSFQKILRGSYNIRTT 164 (205)
Q Consensus 144 ~~e~-l~~~~~~l~~~~Gi~~~ 164 (205)
+.++ ++.+...++ .....+.
T Consensus 236 ~~~e~~~~~~~~l~-~l~~~~~ 256 (302)
T TIGR01212 236 SLEEYISLACDFLE-HLPPEVV 256 (302)
T ss_pred CHHHHHHHHHHHHH-hCCcCeE
Confidence 7666 666666676 5655444
No 79
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=97.65 E-value=0.0071 Score=55.12 Aligned_cols=153 Identities=10% Similarity=0.062 Sum_probs=102.4
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|+ ++.+.+.++++.+++. ++. ....++++|+... +.++.+.+.+. ..+.+.+.+.+++.++.+-+ ..+
T Consensus 112 GTPs~l~~~~l~~ll~~i~~~~~~~-~~~e~tie~~p~~lt~e~l~~L~~~G~-~rvsiGvQS~~~~vl~~l~R---~~~ 186 (453)
T PRK13347 112 GTPTILNPDQFERLMAALRDAFDFA-PEAEIAVEIDPRTVTAEMLQALAALGF-NRASFGVQDFDPQVQKAINR---IQP 186 (453)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCC-CCceEEEEeccccCCHHHHHHHHHcCC-CEEEECCCCCCHHHHHHhCC---CCC
Confidence 8898 5789999999999875 331 1236889998743 46888888886 48899999999999998743 457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCC-------CCccCCcHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV-------SQFRTSSDDK 147 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~-------~~~~~~~~e~ 147 (205)
.+++.+.++.+.+ .|.. .+++=+|-|+ ..+.+++.+.++++..++. +|.+.+|...... .+...|+.++
T Consensus 187 ~~~~~~ai~~lr~-~G~~-~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~ 264 (453)
T PRK13347 187 EEMVARAVELLRA-AGFE-SINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEE 264 (453)
T ss_pred HHHHHHHHHHHHh-cCCC-cEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHH
Confidence 8899999885544 4532 1333334332 2678899999999999874 6777666422100 1233455444
Q ss_pred HH----HHHHHHHhcCCce
Q 028700 148 VS----SFQKILRGSYNIR 162 (205)
Q Consensus 148 l~----~~~~~l~~~~Gi~ 162 (205)
.. .+.+.+. +.|..
T Consensus 265 ~~~~~~~~~~~L~-~~Gy~ 282 (453)
T PRK13347 265 RLRQARAVADRLL-AAGYV 282 (453)
T ss_pred HHHHHHHHHHHHH-HCCCE
Confidence 33 3445666 57764
No 80
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=97.60 E-value=0.01 Score=54.74 Aligned_cols=154 Identities=9% Similarity=0.113 Sum_probs=104.8
Q ss_pred CccC-CCHHHHHHHHHHhhcCCCCCC-CCcEEEEc-C--CcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGLPFQVS-PKRITVST-V--GIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF 75 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~~i~~~-~~~~~v~T-~--G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~ 75 (205)
|+|+ +..+.+.++++.+++.-.+.. ...++++. + .+. ..++.+..++. .++.+.+.+.+++.++.+ .+..
T Consensus 227 GTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv-~RISIGvQS~~d~vLk~i---gR~h 302 (488)
T PRK08207 227 GTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGV-DRISINPQTMNDETLKAI---GRHH 302 (488)
T ss_pred CCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCC-CeEEEcCCcCCHHHHHHh---CCCC
Confidence 7898 477888888888875410111 23566664 2 122 46888888887 489999999999999987 3356
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCC-------CCccCCcHH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV-------SQFRTSSDD 146 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~-------~~~~~~~~e 146 (205)
+.+++.+.++.+.+ .|-. .|++=+|-|+ +++.+++.+.++++..++. .+.+-++.+.. + .++..|+++
T Consensus 303 t~e~v~~ai~~ar~-~Gf~-~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~-gT~l~~~~~~~~~~~~~ 379 (488)
T PRK08207 303 TVEDIIEKFHLARE-MGFD-NINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKR-ASRLTENKEKYKVADRE 379 (488)
T ss_pred CHHHHHHHHHHHHh-CCCC-eEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcC-CChHHHhcCcCCCcCHH
Confidence 88999999985444 4532 6777788786 6889999999999999873 56665655442 2 224456665
Q ss_pred HHHHH----HHHHHhcCCceE
Q 028700 147 KVSSF----QKILRGSYNIRT 163 (205)
Q Consensus 147 ~l~~~----~~~l~~~~Gi~~ 163 (205)
+..++ .+.++ ++|...
T Consensus 380 ~~~~m~~~a~~~l~-~~Gy~~ 399 (488)
T PRK08207 380 EIEKMMEEAEEWAK-ELGYVP 399 (488)
T ss_pred HHHHHHHHHHHHHH-HcCCHh
Confidence 55444 44455 577643
No 81
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=97.58 E-value=0.00092 Score=57.87 Aligned_cols=175 Identities=17% Similarity=0.151 Sum_probs=110.2
Q ss_pred CccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|||++-.+.+++.++.+|++ |-. .|+-+-|+|.. ..+++|.++++| .+.|.....+ ....
T Consensus 87 GdPl~~ieR~~~~ir~LK~efG~~---fHiHLYT~g~~~~~e~l~~L~eAGLD-EIRfHp~~~~------------~~~~ 150 (353)
T COG2108 87 GDPLLEIERTVEYIRLLKDEFGED---FHIHLYTTGILATEEALKALAEAGLD-EIRFHPPRPG------------SKSS 150 (353)
T ss_pred CChHHHHHHHHHHHHHHHHhhccc---eeEEEeeccccCCHHHHHHHHhCCCC-eEEecCCCcc------------cccc
Confidence 89999999999999999998 432 39999999976 368999999885 7655443111 2234
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-c--eEEEeecCCCCC----CCCcc---------
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-V--VVNLIPFNPIGS----VSQFR--------- 141 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~--~v~lip~~~~g~----~~~~~--------- 141 (205)
+..++++..+. ..+..|=+++|.|||. ++.+..+++++...+ . .+|=+.|+...- ...|.
T Consensus 151 e~~i~~l~~A~-~~g~dvG~EiPaipg~---e~~i~e~~~~~~~~~~~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av 226 (353)
T COG2108 151 EKYIENLKIAK-KYGMDVGVEIPAIPGE---EEAILEFAKALDENGLDFLNINELEFSENNYENLLERGYKISDDGSSAV 226 (353)
T ss_pred HHHHHHHHHHH-HhCccceeecCCCcch---HHHHHHHHHHHHhcccceeeeeeeeeccchHHHHHhcCceeccCCcccc
Confidence 56677776443 4788999999999995 557888888888776 2 333334433210 01111
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEecccccccccccccccccccccccCCCCCCCCCC
Q 028700 142 TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTD 198 (205)
Q Consensus 142 ~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~~~Cgql~~~~~~~~~~~~~~~~~~ 198 (205)
.-|.+...+..+.+++..+++++. +.+.-.+|.=-..|....+++.|++---+||
T Consensus 227 ~GS~E~~Lk~l~~~~~~~~l~vH~--Css~~KDavQ~r~Rl~r~Akn~ak~yeeit~ 281 (353)
T COG2108 227 AGSLEAALKVLKWAEENWDLTVHY--CSSKFKDAVQLRNRLKRMAKNVAKPYEEITE 281 (353)
T ss_pred cchHHHHHHHHHHHhcccCceEEE--CchhhhHHHHHHHHHHHHHhhcCCcceeecC
Confidence 223455555555555233455543 5555455543334455566676666544443
No 82
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=97.55 E-value=0.0023 Score=56.01 Aligned_cols=148 Identities=11% Similarity=0.123 Sum_probs=95.6
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCc-------EEEEcCCcH--HHHHHHhhcCCCceEE-EeecCCCHHhhhhhcCCC
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKR-------ITVSTVGIV--HAINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAA 72 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~-------~~v~T~G~~--~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i~~~~ 72 (205)
+|.+..+.+.++++.+++.+.++...- ....|+|+. ..++++.+.|.+ .+. ....+.+++.++.+.|.
T Consensus 99 ~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~-~~~~~g~E~~~~~~~~~~~~~- 176 (340)
T TIGR03699 99 NPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLD-SIPGGGAEILSDRVRKIISPK- 176 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCC-cCCCCcccccCHHHHHhhCCC-
Confidence 677778888899999987643221100 012366765 368888888864 443 23566889999998754
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc----eEEEeecC--CCC-CCCCccCCcH
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV----VVNLIPFN--PIG-SVSQFRTSSD 145 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~----~v~lip~~--~~g-~~~~~~~~~~ 145 (205)
..+.++.++.++.+. +.|.++... +|=|...+.+++.+.+.++++++. -..++|++ |-| +.....+++.
T Consensus 177 -~~s~~~~l~~i~~a~-~~Gi~v~~~--~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~ 252 (340)
T TIGR03699 177 -KISSEEWLEVMETAH-KLGLPTTAT--MMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATS 252 (340)
T ss_pred -CCCHHHHHHHHHHHH-HcCCCccce--eEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCH
Confidence 456888888888544 467665544 566678888899999999998863 23567753 323 1112345666
Q ss_pred HHHHHHHHHHH
Q 028700 146 DKVSSFQKILR 156 (205)
Q Consensus 146 e~l~~~~~~l~ 156 (205)
++..+...+++
T Consensus 253 ~e~l~~iA~~R 263 (340)
T TIGR03699 253 TEYLKVLAISR 263 (340)
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 83
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=97.42 E-value=0.0056 Score=55.63 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEE-EEcCCcHHH-HHHHhhcCCCc--eEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRIT-VSTVGIVHA-INKFHSDLPGL--NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 84 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~-v~T~G~~~~-~~~l~~~~~~~--~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l 84 (205)
..+.++++.+.+.++ ..++. +.+++..+. ++.+.+ +- + .+.+++.|.+++.++.+- +.+..+++++.+
T Consensus 216 ~~~~~Ll~~l~~~~~---~~r~~~~~p~~~~dell~~m~~-g~-~~~~l~IglESgs~~vLk~m~---r~~~~~~~~~~i 287 (440)
T PRK14862 216 TRMTDLCEALGELGA---WVRLHYVYPYPHVDEVIPLMAE-GK-ILPYLDIPFQHASPRVLKRMK---RPASVEKTLERI 287 (440)
T ss_pred hHHHHHHHHHHhcCC---EEEEecCCCCcCCHHHHHHHhc-CC-CccccccccccCCHHHHHhcC---CCCCHHHHHHHH
Confidence 578899999887654 11222 334454443 333333 31 2 566889999999998853 356788888888
Q ss_pred HHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 85 KEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 85 ~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
+.+.+ ....+.++.-+|=|+ ++++++++++.+|+++++. .+.+-+|.|.+
T Consensus 288 ~~lr~-~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~p 339 (440)
T PRK14862 288 KKWRE-ICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVE 339 (440)
T ss_pred HHHHH-HCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCC
Confidence 86655 344566666677554 6889999999999999984 78889999986
No 84
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.0059 Score=52.77 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=73.0
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEcCCcH-----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 11 LVEAVRIMTGLPFQVSPKRITVSTVGIV-----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 11 l~~~l~~lk~~~i~~~~~~~~v~T~G~~-----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
....++.+...|. .+.+.|=+.. +.+.++.+... +.+.+|+-+.|++.++.+=|.+ .+.++=+++++
T Consensus 105 tR~ilei~~~~~~-----~v~I~TKS~lv~RDld~l~~~~~~~~-v~V~~Sitt~d~~l~k~~EP~a--psp~~Ri~al~ 176 (297)
T COG1533 105 TRKILEILLKYGF-----PVSIVTKSALVLRDLDLLLELAERGK-VRVAVSITTLDEELAKILEPRA--PSPEERLEALK 176 (297)
T ss_pred HHHHHHHHHHcCC-----cEEEEECCcchhhhHHHHHhhhhccc-eEEEEEeecCcHHHHHhcCCCC--cCHHHHHHHHH
Confidence 3444555554455 6888885432 34454444443 6789999999999999987654 46778888888
Q ss_pred HHHHhcCCcEEEEE-EEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 86 EYQKNSQQKIFIEY-IMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 86 ~~~~~~~~~V~ir~-~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
.+.+ .|.++++.+ |+|||+|| ++++++++-+..-+
T Consensus 177 ~l~e-aGi~~~v~v~PIiP~~~d--~e~e~~l~~~~~ag 212 (297)
T COG1533 177 ELSE-AGIPVGLFVAPIIPGLND--EELERILEAAAEAG 212 (297)
T ss_pred HHHH-CCCeEEEEEecccCCCCh--HHHHHHHHHHHHcC
Confidence 6665 688888776 89999999 67888888766665
No 85
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=97.40 E-value=0.029 Score=50.40 Aligned_cols=151 Identities=9% Similarity=0.074 Sum_probs=106.2
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCC--cH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVG--IV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G--~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|.|+ +.++.+.++++.+++. ++. ....++++++- +. ..++.+.+.+. .++.+-+-+.|++..+.+- +..+
T Consensus 75 GTps~l~~~~l~~ll~~i~~~~~~~-~~~eit~E~~P~~lt~e~l~~l~~~Gv-nrislGvQS~~d~~L~~l~---R~~~ 149 (400)
T PRK07379 75 GTPSLLSVEQLERILTTLDQRFGIA-PDAEISLEIDPGTFDLEQLQGYRSLGV-NRVSLGVQAFQDELLALCG---RSHR 149 (400)
T ss_pred CccccCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCcCCHHHHHHHHHCCC-CEEEEEcccCCHHHHHHhC---CCCC
Confidence 6788 5788899999999865 331 12368888762 22 46888888887 4899999999999999874 3457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCC---------CccCCcH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVS---------QFRTSSD 145 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~---------~~~~~~~ 145 (205)
.+++.+.++.+.+ .|-+ .+++=+|-|+ +.+.+++.+-++++..++ .+|.+-++.+.. +. ++..|++
T Consensus 150 ~~~~~~ai~~l~~-~G~~-~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~p-gT~l~~~~~~g~~~~~~~ 226 (400)
T PRK07379 150 VKDIFAAVDLIHQ-AGIE-NFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEP-GTAFGKQYQPGKAPLPSD 226 (400)
T ss_pred HHHHHHHHHHHHH-cCCC-eEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecC-CchhHHHhhcCCCCCCCH
Confidence 8899999885544 4433 2556677664 478999999999999987 477777777653 32 2345666
Q ss_pred HHHHH----HHHHHHhcCCc
Q 028700 146 DKVSS----FQKILRGSYNI 161 (205)
Q Consensus 146 e~l~~----~~~~l~~~~Gi 161 (205)
++..+ +.+.++ +.|.
T Consensus 227 ~~~~~~~~~~~~~L~-~~Gy 245 (400)
T PRK07379 227 ETTAAMYRLAQEILT-QAGY 245 (400)
T ss_pred HHHHHHHHHHHHHHH-HcCC
Confidence 55444 345566 5776
No 86
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=97.39 E-value=0.0063 Score=55.05 Aligned_cols=125 Identities=13% Similarity=0.171 Sum_probs=87.3
Q ss_pred CccCCCHHHHHHHHHHhhcCC-CCCCCCcEEEEc---CCcHH-HHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGLP-FQVSPKRITVST---VGIVH-AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARA 74 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~-i~~~~~~~~v~T---~G~~~-~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~ 74 (205)
|+++.+.+.+.++++.+.+.+ +. .+.+.+ ..+.+ .++.+...+ . ..+.+.+.+.+++..+.+- +.
T Consensus 195 g~d~~~~~~l~~Ll~~i~~~~~i~----~~r~~~~~p~~~~~ell~~~~~~~~~~-~~l~iglES~s~~vLk~m~---k~ 266 (430)
T TIGR01125 195 GKDLYRESKLVDLLEELGKVGGIY----WIRMHYLYPDELTDDVIDLMAEGPKVL-PYLDIPLQHASDRILKLMR---RP 266 (430)
T ss_pred ccCCCCcccHHHHHHHHHhcCCcc----EEEEccCCcccCCHHHHHHHhhCCccc-CceEeCCCCCCHHHHhhCC---CC
Confidence 455544456788888887653 31 233322 22333 344444442 2 2677999999999998864 34
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
++.+++++.++.+.+ .+..+.++.-+|-|+ +++++++++.++|+++.+. .+++-+|-|..
T Consensus 267 ~~~~~~~~~i~~l~~-~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~~~~~~sp~p 328 (430)
T TIGR01125 267 GSGEQQLDFIERLRE-KCPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGAFTYSPEE 328 (430)
T ss_pred CCHHHHHHHHHHHHH-hCCCCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeeeccCCC
Confidence 567888888886554 455677888888887 8999999999999999874 68888999985
No 87
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=97.36 E-value=0.02 Score=50.86 Aligned_cols=148 Identities=9% Similarity=0.048 Sum_probs=103.1
Q ss_pred CccCC-CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPLN-NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPll-q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|.|++ .++.+.++++.+++. +...++++++-.. ..++.+.+.+. .++.+.+.+.+++..+.+.+ ..+.
T Consensus 67 GTPs~l~~~~l~~ll~~i~~~----~~~eit~E~~P~~~~~~~l~~l~~~G~-nrislGvQS~~~~~L~~l~R---~~~~ 138 (370)
T PRK06294 67 GTPSLVPPALIQDILKTLEAP----HATEITLEANPENLSESYIRALALTGI-NRISIGVQTFDDPLLKLLGR---THSS 138 (370)
T ss_pred CccccCCHHHHHHHHHHHHhC----CCCeEEEEeCCCCCCHHHHHHHHHCCC-CEEEEccccCCHHHHHHcCC---CCCH
Confidence 67875 677888888888754 2337999988643 46888888887 48999999999999988754 4578
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCC---------ccCCcHH
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ---------FRTSSDD 146 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~---------~~~~~~e 146 (205)
+++.++++.+.+ .|-. .+++=||-|+. ++.+++.+.++++..++. +|.+-++.+.. +.. ...|+++
T Consensus 139 ~~~~~ai~~~~~-~g~~-~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~-gT~l~~~~~~~~~~~~~~~ 215 (370)
T PRK06294 139 SKAIDAVQECSE-HGFS-NLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDP-HTSFYKHRKRLLPSIADEE 215 (370)
T ss_pred HHHHHHHHHHHH-cCCC-eEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecC-CChHHHHHhcCCCCCcCHH
Confidence 889998885443 4532 24444777754 678889999999998874 67777777653 321 2245555
Q ss_pred HHHH----HHHHHHhcCCc
Q 028700 147 KVSS----FQKILRGSYNI 161 (205)
Q Consensus 147 ~l~~----~~~~l~~~~Gi 161 (205)
...+ ..+.+. ..|.
T Consensus 216 ~~~~~~~~~~~~L~-~~Gy 233 (370)
T PRK06294 216 ILAEMSLAAEELLT-SQGF 233 (370)
T ss_pred HHHHHHHHHHHHHH-HcCC
Confidence 4444 345566 5775
No 88
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=97.34 E-value=0.029 Score=49.97 Aligned_cols=150 Identities=9% Similarity=0.034 Sum_probs=105.1
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|-|+ ++++.+.++++.+++. .+ .+...++++++-.. +.++.+.+.+. .+|.+-+-+.|++..+.+- +..+
T Consensus 64 GTPs~l~~~~L~~ll~~i~~~f~~-~~~~eit~E~~P~~i~~e~L~~l~~~Gv-nrislGvQS~~d~vL~~l~---R~~~ 138 (380)
T PRK09057 64 GTPSLMQPETVAALLDAIARLWPV-ADDIEITLEANPTSVEAGRFRGYRAAGV-NRVSLGVQALNDADLRFLG---RLHS 138 (380)
T ss_pred CccccCCHHHHHHHHHHHHHhCCC-CCCccEEEEECcCcCCHHHHHHHHHcCC-CEEEEecccCCHHHHHHcC---CCCC
Confidence 6777 4778888999988864 22 12236899888632 47888888887 4899999999999998874 3457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCC---------CCccCCcH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSV---------SQFRTSSD 145 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~---------~~~~~~~~ 145 (205)
.+++.+.++.+.+ .+ ..+++=||-|+ ..+.+++.+-++.+..++ .+|.+-++.... + .++..|++
T Consensus 139 ~~~~~~ai~~~~~-~~--~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~-gT~l~~~~~~g~~~~~~~ 214 (380)
T PRK09057 139 VAEALAAIDLARE-IF--PRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEE-GTAFYGLHAAGKLILPDE 214 (380)
T ss_pred HHHHHHHHHHHHH-hC--ccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecC-CChHHHHHhcCCCCCCCh
Confidence 8888888875544 33 45676688775 678878877777777776 468787777653 3 23445665
Q ss_pred HH----HHHHHHHHHhcCCc
Q 028700 146 DK----VSSFQKILRGSYNI 161 (205)
Q Consensus 146 e~----l~~~~~~l~~~~Gi 161 (205)
++ .+.+.+.++ ..|+
T Consensus 215 ~~~~~~~~~~~~~L~-~~G~ 233 (380)
T PRK09057 215 DLAADLYELTQEITA-AAGL 233 (380)
T ss_pred HHHHHHHHHHHHHHH-HcCC
Confidence 53 444556676 5776
No 89
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=97.33 E-value=0.029 Score=50.28 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=105.8
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCc-H--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGI-V--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~-~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|.|+ +..+.+.++++.+++. .+ .+...++++++-- . ..++.+.+.|.+ ++.+-+-+.|++..+.+-. ..+
T Consensus 82 GTPs~L~~~~L~~ll~~i~~~~~~-~~~~eit~E~~p~~~~~e~L~~l~~~Gvn-risiGvQS~~~~~L~~l~R---~~~ 156 (394)
T PRK08898 82 GTPSLLSAAGLDRLLSDVRALLPL-DPDAEITLEANPGTFEAEKFAQFRASGVN-RLSIGIQSFNDAHLKALGR---IHD 156 (394)
T ss_pred CCcCCCCHHHHHHHHHHHHHhCCC-CCCCeEEEEECCCCCCHHHHHHHHHcCCC-eEEEecccCCHHHHHHhCC---CCC
Confidence 6788 4788899999999865 33 1235789988632 2 478899999874 8999999999999998744 345
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc-----cCCcHHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF-----RTSSDDKVS 149 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~-----~~~~~e~l~ 149 (205)
.+++.+.++...+ .+. .+++=||-|+ +++.+++.+-++++..++. +|.+.++.+.. +..+ ..|+.+...
T Consensus 157 ~~~~~~~i~~~~~-~~~--~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~-gT~l~~~~~~~~~~~~~~ 232 (394)
T PRK08898 157 GAEARAAIEIAAK-HFD--NFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEP-NTLFAKFPPALPDDDASA 232 (394)
T ss_pred HHHHHHHHHHHHH-hCC--ceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECC-CChhhhccCCCCChHHHH
Confidence 6778888775444 333 4566788887 7899999999999988874 78888887653 3322 235555444
Q ss_pred HH----HHHHHhcCCc
Q 028700 150 SF----QKILRGSYNI 161 (205)
Q Consensus 150 ~~----~~~l~~~~Gi 161 (205)
++ .+.++ ..|.
T Consensus 233 ~~~~~~~~~L~-~~Gy 247 (394)
T PRK08898 233 DMQDWIEARLA-AAGY 247 (394)
T ss_pred HHHHHHHHHHH-HcCC
Confidence 44 44565 5675
No 90
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=97.32 E-value=0.019 Score=49.81 Aligned_cols=146 Identities=12% Similarity=0.119 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcC---CcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTV---GIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~---G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.+.++++.+++.. +..++-+.|. |..+.++.+.+.+++ .+..-+.+. +..+.++- ..++.++.++.++
T Consensus 127 ~~l~~li~~I~~~~---p~i~Ievl~~d~~g~~e~l~~l~~aG~d-v~~hnlEt~-~~l~~~vr---r~~t~e~~Le~l~ 198 (302)
T TIGR00510 127 SHLAECIEAIREKL---PNIKIETLVPDFRGNIAALDILLDAPPD-VYNHNLETV-ERLTPFVR---PGATYRWSLKLLE 198 (302)
T ss_pred HHHHHHHHHHHhcC---CCCEEEEeCCcccCCHHHHHHHHHcCch-hhcccccch-HHHHHHhC---CCCCHHHHHHHHH
Confidence 34556666665531 1113333332 223345555555542 233333333 44555543 2457788888887
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc---cCCcHHHHHHHHHHHHhcCCc
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF---RTSSDDKVSSFQKILRGSYNI 161 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~---~~~~~e~l~~~~~~l~~~~Gi 161 (205)
.+.+ ....+.+..=+|=|+..++|++.+.+++++++++ .+.+-+|-+.. ...+ .-.++++.+.++++.. +.|+
T Consensus 199 ~ak~-~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~-~~~~~v~~~~~p~~f~~~~~~a~-~~gf 275 (302)
T TIGR00510 199 RAKE-YLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPS-RRHLPVKRYVSPEEFDYYRSVAL-EMGF 275 (302)
T ss_pred HHHH-hCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCC-CCCCccccCCCHHHHHHHHHHHH-HcCC
Confidence 5544 4446888888999999999999999999999985 67777887652 2211 2245677888888877 6898
Q ss_pred eEEe
Q 028700 162 RTTV 165 (205)
Q Consensus 162 ~~~i 165 (205)
....
T Consensus 276 ~~v~ 279 (302)
T TIGR00510 276 LHAA 279 (302)
T ss_pred hheE
Confidence 6543
No 91
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=97.30 E-value=0.039 Score=49.45 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=103.2
Q ss_pred Ccc-CCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEP-LNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEP-llq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|.| ++..+.+.++++.+++. ++ .+...+++++|... ..++.+.+.+. .++.+.+.+.|++..+.+- +..+
T Consensus 71 GTPs~l~~~~l~~ll~~i~~~~~~-~~~~eitiE~nP~~~~~e~l~~l~~~Gv-nRiSiGvQS~~d~~L~~lg---R~h~ 145 (390)
T PRK06582 71 GTPSLMNPVIVEGIINKISNLAII-DNQTEITLETNPTSFETEKFKAFKLAGI-NRVSIGVQSLKEDDLKKLG---RTHD 145 (390)
T ss_pred CccccCCHHHHHHHHHHHHHhCCC-CCCCEEEEEeCCCcCCHHHHHHHHHCCC-CEEEEECCcCCHHHHHHcC---CCCC
Confidence 789 46888888889888864 33 12347999999843 47888888887 4899999999999988864 3457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCC-ceEEEeecCCCCCC---------CCccCCcH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSV---------SQFRTSSD 145 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~-~~v~lip~~~~g~~---------~~~~~~~~ 145 (205)
.+++++.++.+.+ .. ..+++=||-|+= .+.+++.+-++.+..++ .+|.+-++.... + .++..|++
T Consensus 146 ~~~~~~ai~~~~~-~~--~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~-gT~l~~~~~~g~~~~p~~ 221 (390)
T PRK06582 146 CMQAIKTIEAANT-IF--PRVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEK-GTPFYKLFKEGNLILPHS 221 (390)
T ss_pred HHHHHHHHHHHHH-hC--CcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEcc-CChHHHHHhcCCCCCCCh
Confidence 8889888876544 23 356666776664 55677777777777776 467777776542 2 23456666
Q ss_pred HHHHHH----HHHHHhcCCc
Q 028700 146 DKVSSF----QKILRGSYNI 161 (205)
Q Consensus 146 e~l~~~----~~~l~~~~Gi 161 (205)
++..++ .+.++ ..|.
T Consensus 222 ~~~~~~~~~~~~~L~-~~Gy 240 (390)
T PRK06582 222 DAAAEMYEWTNHYLE-SKKY 240 (390)
T ss_pred HHHHHHHHHHHHHHH-HcCC
Confidence 554443 45566 5675
No 92
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=97.29 E-value=0.011 Score=51.09 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=96.1
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCcEE-EE---------cCCcH--HHHHHHhhcCCCceEE-EeecCCCHHhhhhhc
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKRIT-VS---------TVGIV--HAINKFHSDLPGLNLA-VSLHAPVQDVRCQIM 69 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~~~-v~---------T~G~~--~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i~ 69 (205)
.|....+.+.++++.+++.+. ..+++ ++ +.|.. ..+++|.++|.+ .+. ....+.+++.+++++
T Consensus 63 ~~~~~~~~~~~i~~~Ik~~~~---~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~-~i~~~g~E~l~~~~~~~i~ 138 (309)
T TIGR00423 63 NPQLDIEYYEELFRAIKQEFP---DVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLD-SMPGTGAEILDDSVRRKIC 138 (309)
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cCCCCcchhcCHHHHHhhC
Confidence 366788899999999998732 11333 21 45554 368899888874 564 578889999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCce----EEEeecC--CCC-C---CCC
Q 028700 70 PAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV----VNLIPFN--PIG-S---VSQ 139 (205)
Q Consensus 70 ~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~----v~lip~~--~~g-~---~~~ 139 (205)
+. +.+.++.++.++.+.+ .|.++ ..-+|=|...+.|+..+.+.+++++... -.++|++ |-+ + ...
T Consensus 139 ~~--~~t~~~~l~~i~~a~~-~Gi~~--~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~ 213 (309)
T TIGR00423 139 PN--KLSSDEWLEVIKTAHR-LGIPT--TATMMFGHVENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEV 213 (309)
T ss_pred CC--CCCHHHHHHHHHHHHH-cCCCc--eeeEEecCCCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCC
Confidence 64 3467787888875533 56544 4556777888999999999999988631 2356643 432 1 111
Q ss_pred ccCCcHHHHHHHHHHHH
Q 028700 140 FRTSSDDKVSSFQKILR 156 (205)
Q Consensus 140 ~~~~~~e~l~~~~~~l~ 156 (205)
+++++..+..+...+++
T Consensus 214 ~~~~~~~e~lr~iA~~R 230 (309)
T TIGR00423 214 RKGASGIDDLKVIAISR 230 (309)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 24566666666555543
No 93
>PLN02428 lipoic acid synthase
Probab=97.28 E-value=0.032 Score=49.32 Aligned_cols=149 Identities=11% Similarity=0.121 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
..+.+.++++.+++.. +..++.+.|-++. ..++.+.+.+++ .+..-+.+ .+..++++... ..+.++.++.
T Consensus 164 ga~~~~elir~Ir~~~---P~i~Ie~L~pdf~~d~elL~~L~eAG~d-~i~hnlET-v~rL~~~Ir~~--~~sye~~Le~ 236 (349)
T PLN02428 164 GSGHFAETVRRLKQLK---PEILVEALVPDFRGDLGAVETVATSGLD-VFAHNIET-VERLQRIVRDP--RAGYKQSLDV 236 (349)
T ss_pred cHHHHHHHHHHHHHhC---CCcEEEEeCccccCCHHHHHHHHHcCCC-EEccCccC-cHHHHHHhcCC--CCCHHHHHHH
Confidence 3567888888888752 2336777666553 468888888875 56666665 45666666421 3467888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCce-EEEeecCCCCCCCCc---cCCcHHHHHHHHHHHHhcC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQF---RTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~-v~lip~~~~g~~~~~---~~~~~e~l~~~~~~l~~~~ 159 (205)
++.+.+ ....+.+..-+|=|+.+++|++.++++++.++++. +-+-+|-+.. ...+ .-..+++.+.++++.. +.
T Consensus 237 L~~ak~-~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps-~~h~~v~~~v~p~~f~~~~~~~~-~~ 313 (349)
T PLN02428 237 LKHAKE-SKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPT-KRHLPVKEYVTPEKFEFWREYGE-EM 313 (349)
T ss_pred HHHHHH-hCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCC-cceeeeecccCHHHHHHHHHHHH-Hc
Confidence 875544 42245566677779999999999999999999743 3333443322 1111 1235688888999988 79
Q ss_pred CceEEe
Q 028700 160 NIRTTV 165 (205)
Q Consensus 160 Gi~~~i 165 (205)
|+....
T Consensus 314 gf~~v~ 319 (349)
T PLN02428 314 GFRYVA 319 (349)
T ss_pred CCceEE
Confidence 986654
No 94
>PRK06267 hypothetical protein; Provisional
Probab=97.23 E-value=0.026 Score=49.83 Aligned_cols=96 Identities=17% Similarity=0.259 Sum_probs=70.1
Q ss_pred EEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecC
Q 028700 54 AVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFN 132 (205)
Q Consensus 54 ~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~ 132 (205)
...+.+.+++.|.++.+. .++++.++.++.+. +.|.++... +|=|.+.+.+++.++++++++++. .+-+.+|.
T Consensus 132 ~g~~ET~~~~~~~~i~~~---~s~ed~~~~l~~ak-~aGi~v~~g--~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~ 205 (350)
T PRK06267 132 VGAVETVNPKLHREICPG---KPLDKIKEMLLKAK-DLGLKTGIT--IILGLGETEDDIEKLLNLIEELDLDRITFYSLN 205 (350)
T ss_pred eeeeecCCHHHHHhhCCC---CCHHHHHHHHHHHH-HcCCeeeee--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 356677888888888753 47889999998444 467665544 555667789999999999999984 57777888
Q ss_pred CCCCCC---CccCCcHHHHHHHHHHHH
Q 028700 133 PIGSVS---QFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 133 ~~g~~~---~~~~~~~e~l~~~~~~l~ 156 (205)
|.. +. ..++++.+++.++...++
T Consensus 206 P~p-GTp~~~~~~~s~~e~lr~ia~~R 231 (350)
T PRK06267 206 PQK-GTIFENKPSVTTLEYMNWVSSVR 231 (350)
T ss_pred ECC-CCcCCCCCCCCHHHHHHHHHHHH
Confidence 874 43 345678888877777665
No 95
>PRK12928 lipoyl synthase; Provisional
Probab=97.20 E-value=0.038 Score=47.63 Aligned_cols=147 Identities=11% Similarity=0.130 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCc----HHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGI----VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~----~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
.+.+.++++.+++.. +..++.+-|..+ .+.++++.+.+.+ -+..-+. ..++.++++.+ ..+.++.++.
T Consensus 122 ~~~~~ell~~Ik~~~---p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~-i~~hnlE-t~~~vl~~m~r---~~t~e~~le~ 193 (290)
T PRK12928 122 AAHFVATIAAIRARN---PGTGIEVLTPDFWGGQRERLATVLAAKPD-VFNHNLE-TVPRLQKAVRR---GADYQRSLDL 193 (290)
T ss_pred HHHHHHHHHHHHhcC---CCCEEEEeccccccCCHHHHHHHHHcCch-hhcccCc-CcHHHHHHhCC---CCCHHHHHHH
Confidence 345667777776641 222444433322 2346666666532 2222233 33666666643 3678888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc---cCCcHHHHHHHHHHHHhcC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF---RTSSDDKVSSFQKILRGSY 159 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~---~~~~~e~l~~~~~~l~~~~ 159 (205)
++.+. +.+..+.+..-+|=|+.+++|++.+.++++++++. .+.+-+|-+.. ...+ +-.++++.+.++++.. +.
T Consensus 194 l~~ak-~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~-~~~~~v~~~~~~~~f~~~~~~~~-~~ 270 (290)
T PRK12928 194 LARAK-ELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPS-LAHLPVQRYWTPEEFEALGQIAR-EL 270 (290)
T ss_pred HHHHH-HhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCC-ccCCceeeccCHHHHHHHHHHHH-Hc
Confidence 88544 45666888888899999999999999999999985 67888887643 2111 1245678888888888 69
Q ss_pred CceEEe
Q 028700 160 NIRTTV 165 (205)
Q Consensus 160 Gi~~~i 165 (205)
|+....
T Consensus 271 g~~~~~ 276 (290)
T PRK12928 271 GFSHVR 276 (290)
T ss_pred CCceeE
Confidence 986644
No 96
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=97.17 E-value=0.052 Score=47.99 Aligned_cols=151 Identities=10% Similarity=0.069 Sum_probs=103.9
Q ss_pred CccC-CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPL-NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|-|+ +..+.+.++++.+++. + .+...+++++|... ..++.+.+.+. ..+.+.+.+.+++..+.+-+ ..+.
T Consensus 65 GTPs~L~~~~l~~ll~~i~~~-~-~~~~eitiE~nP~~lt~e~l~~lk~~G~-nrisiGvQS~~d~vL~~l~R---~~~~ 138 (353)
T PRK05904 65 GTPNCLNDQLLDILLSTIKPY-V-DNNCEFTIECNPELITQSQINLLKKNKV-NRISLGVQSMNNNILKQLNR---THTI 138 (353)
T ss_pred CccccCCHHHHHHHHHHHHHh-c-CCCCeEEEEeccCcCCHHHHHHHHHcCC-CEEEEecccCCHHHHHHcCC---CCCH
Confidence 5676 4778888888888764 3 13347999998743 46788888886 48999999999999998744 4578
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCCCc----cCCcH----HH
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQF----RTSSD----DK 147 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~~~----~~~~~----e~ 147 (205)
+++.+.++.+.+ .|-. .+++-+|-|+ +.+.+++++.++++..++ .++.+-++.+.. +..+ ..+++ +.
T Consensus 139 ~~~~~ai~~lr~-~G~~-~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~-gT~l~~~~~~~~~~~~~~~ 215 (353)
T PRK05904 139 QDSKEAINLLHK-NGIY-NISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKE-GSILKKYHYTIDEDKEAEQ 215 (353)
T ss_pred HHHHHHHHHHHH-cCCC-cEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecC-CChHhhcCCCCChHHHHHH
Confidence 899999886554 4422 2555566553 478889999999999887 467777777642 3211 11232 34
Q ss_pred HHHHHHHHHhcCCce
Q 028700 148 VSSFQKILRGSYNIR 162 (205)
Q Consensus 148 l~~~~~~l~~~~Gi~ 162 (205)
++.+.+.++ ..|..
T Consensus 216 ~~~~~~~L~-~~Gy~ 229 (353)
T PRK05904 216 LNYIKAKFN-KLNYK 229 (353)
T ss_pred HHHHHHHHH-HcCCc
Confidence 444566677 67764
No 97
>PTZ00413 lipoate synthase; Provisional
Probab=97.13 E-value=0.062 Score=47.95 Aligned_cols=147 Identities=10% Similarity=0.135 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEc---CCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVST---VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T---~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.+.+.++.+++.. +...+++.+ -|....+++|.+.+++ .++--|.+ .+..+.++.. .....++-++.++
T Consensus 213 ~~~a~~I~~Ir~~~---p~~~IevligDf~g~~e~l~~L~eAG~d-vynHNLET-v~rLyp~VRt--~~atYe~sLe~Lr 285 (398)
T PTZ00413 213 SHVARCVELIKESN---PELLLEALVGDFHGDLKSVEKLANSPLS-VYAHNIEC-VERITPYVRD--RRASYRQSLKVLE 285 (398)
T ss_pred HHHHHHHHHHHccC---CCCeEEEcCCccccCHHHHHHHHhcCCC-EEeccccc-CHhHHHHHcc--CcCCHHHHHHHHH
Confidence 45666666666531 111444444 2233467777777653 44444444 4455555431 1246788888888
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCC-CCCC-c---cCCcHHHHHHHHHHHHhcCC
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIG-SVSQ-F---RTSSDDKVSSFQKILRGSYN 160 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g-~~~~-~---~~~~~e~l~~~~~~l~~~~G 160 (205)
.+.+.+...+.+-.-+|=|.-.+++++.+++..+.+++ ++++|+.++= |..+ + +-.++++.+.+++... +.|
T Consensus 286 ~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelG--VDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~-~~G 362 (398)
T PTZ00413 286 HVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAG--VSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAM-KMG 362 (398)
T ss_pred HHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcC--CcEEeeccccCCCcccCCceeccCHHHHHHHHHHHH-HcC
Confidence 55443234566666778889999999999999999986 4566665432 1111 1 1245688888999888 799
Q ss_pred ceEEe
Q 028700 161 IRTTV 165 (205)
Q Consensus 161 i~~~i 165 (205)
+....
T Consensus 363 f~~v~ 367 (398)
T PTZ00413 363 FLYCA 367 (398)
T ss_pred CceEE
Confidence 86654
No 98
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=97.11 E-value=0.00036 Score=51.45 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=28.1
Q ss_pred CccC--CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCC
Q 028700 2 GEPL--NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 2 GEPl--lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d 61 (205)
|||| ++.+.+.++++.+++.+ +..++.++|||..+.-....... .....+|+|.+|
T Consensus 56 GEPll~~~~~~l~~~i~~~~~~~---~~~~i~i~TNg~~~~~~~~~~~~-~~~~~ls~k~~~ 113 (119)
T PF13394_consen 56 GEPLLYLNPEDLIELIEYLKERG---PEIKIRIETNGTLPTEEKIEDWK-NLEECLSIKYID 113 (119)
T ss_dssp SSGGGSTTHHHHHHHHCTSTT--------EEEEEE-STTHHHHHH-----------------
T ss_pred CCCccccCHHHHHHHHHHHHhhC---CCceEEEEeCCeeccccchhhcc-cccccccccccc
Confidence 9999 67888999999999875 22389999999986322221121 134557776444
No 99
>PRK05481 lipoyl synthase; Provisional
Probab=97.11 E-value=0.076 Score=45.66 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcC-C--cHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTV-G--IVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 84 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~-G--~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l 84 (205)
.+.+.++++.+++. .+..++-+-|. . ..+.+.++...+. .+.-..+...++.++++.+ +++.++.++.+
T Consensus 115 ~~~l~~Ll~~I~~~---~p~irI~~l~~~~~~~~e~L~~l~~ag~--~i~~~~~ets~~vlk~m~r---~~t~e~~le~i 186 (289)
T PRK05481 115 AQHFAETIRAIREL---NPGTTIEVLIPDFRGRMDALLTVLDARP--DVFNHNLETVPRLYKRVRP---GADYERSLELL 186 (289)
T ss_pred HHHHHHHHHHHHhh---CCCcEEEEEccCCCCCHHHHHHHHhcCc--ceeeccccChHHHHHHhCC---CCCHHHHHHHH
Confidence 35677888888764 11124444443 2 1246677777663 3443334445677777653 56788889888
Q ss_pred HHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCcc---CCcHHHHHHHHHHHHhcCC
Q 028700 85 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFR---TSSDDKVSSFQKILRGSYN 160 (205)
Q Consensus 85 ~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~---~~~~e~l~~~~~~l~~~~G 160 (205)
+.+.+ ....+.++.-+|=|+.+++|+..+.++|+++++. .+.+.+|-+.. ...+. ...+++.+.+.++.. +.|
T Consensus 187 ~~ar~-~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys~pa-~k~~~v~~~~k~~r~~~l~~~~~-~i~ 263 (289)
T PRK05481 187 KRAKE-LHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYLQPS-RKHLPVERYVTPEEFDEYKEIAL-ELG 263 (289)
T ss_pred HHHHH-hCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccCCCc-cccCCCCCcCCHHHHHHHHHHHH-HcC
Confidence 86544 3235778888888999999999999999999984 78888998843 21333 244688888888888 799
Q ss_pred ceEEecc
Q 028700 161 IRTTVRK 167 (205)
Q Consensus 161 i~~~i~~ 167 (205)
+.....+
T Consensus 264 ~~~~~~~ 270 (289)
T PRK05481 264 FLHVASG 270 (289)
T ss_pred chheEec
Confidence 8655433
No 100
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=96.97 E-value=0.04 Score=50.83 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=86.3
Q ss_pred ccCCCHHHHHHHHHHhhcCC-CCCCCCcEEEEcCC--c--H-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 3 EPLNNYAALVEAVRIMTGLP-FQVSPKRITVSTVG--I--V-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~-i~~~~~~~~v~T~G--~--~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
+|+++.+.+.++++.+.+++ +++ +...+|.. + . ..++.+.+.+. ..+.+-+.+.+++..+.+- +..+
T Consensus 249 ~f~~~~~~~~~l~~~l~~~~~l~i---~w~~~~r~~~i~~d~ell~~l~~aG~-~~v~iGiES~~~~~L~~~~---K~~t 321 (497)
T TIGR02026 249 EPTINRKKFQEFCEEIIARNPISV---TWGINTRVTDIVRDADILHLYRRAGL-VHISLGTEAAAQATLDHFR---KGTT 321 (497)
T ss_pred ccccCHHHHHHHHHHHHhcCCCCe---EEEEecccccccCCHHHHHHHHHhCC-cEEEEccccCCHHHHHHhc---CCCC
Confidence 56778888999999998775 422 33444432 1 1 24667777786 4888999999999988763 3457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPI 134 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~ 134 (205)
.+++.+.++.+. +.|..+... +|=|+ +++.+++++..+|+..++. .+.+..+.|+
T Consensus 322 ~~~~~~ai~~l~-~~Gi~~~~~--~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~ 378 (497)
T TIGR02026 322 TSTNKEAIRLLR-QHNILSEAQ--FITGFENETDETFEETYRQLLDWDPDQANWLMYTPW 378 (497)
T ss_pred HHHHHHHHHHHH-HCCCcEEEE--EEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 888888887544 467665544 44454 7899999999999999873 5666666665
No 101
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.91 E-value=0.033 Score=48.85 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 7 NYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 7 q~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
.++.+.++++.+++. |+ .+|++.- .. ..+++|.+++++ ..+--|++ +++.|.++.+. .++++-++.
T Consensus 116 ~~~~i~~~v~~Vk~~~~l-----e~c~slG-~l~~eq~~~L~~aGvd-~ynhNLeT-s~~~y~~I~tt---~t~edR~~t 184 (335)
T COG0502 116 DMEEVVEAIKAVKEELGL-----EVCASLG-MLTEEQAEKLADAGVD-RYNHNLET-SPEFYENIITT---RTYEDRLNT 184 (335)
T ss_pred cHHHHHHHHHHHHHhcCc-----HHhhccC-CCCHHHHHHHHHcChh-heeccccc-CHHHHcccCCC---CCHHHHHHH
Confidence 356677777777743 44 4555443 33 368888888874 77777888 99999999864 478888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc--eEEEeecCCCCCCCCcc---CCcHHHHHHHHHHHHhc
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV--VVNLIPFNPIGSVSQFR---TSSDDKVSSFQKILRGS 158 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~--~v~lip~~~~g~~~~~~---~~~~e~l~~~~~~l~~~ 158 (205)
++.. ++.| +.+=.=.|=|...+.++--+++.+++.+.. .|-+-.|||+. +.++. +.+.-+..+....++ -
T Consensus 185 l~~v-k~~G--i~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~-GTPle~~~~~~~~e~lk~IA~~R-i 259 (335)
T COG0502 185 LENV-REAG--IEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIP-GTPLENAKPLDPFEFLKTIAVAR-I 259 (335)
T ss_pred HHHH-HHcC--CccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCC-CCccccCCCCCHHHHHHHHHHHH-H
Confidence 8744 3355 445555788999999997778888888862 34444455553 44443 445544444444444 2
Q ss_pred CCceEEecccc-----cccccccccccccccc
Q 028700 159 YNIRTTVRKQM-----GQDISGACGQLVVNLP 185 (205)
Q Consensus 159 ~Gi~~~i~~~~-----g~d~~~~Cgql~~~~~ 185 (205)
.=....|+-+- +.+..+-|.+-.++++
T Consensus 260 ~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi 291 (335)
T COG0502 260 IMPKSMIRLSAGRETMLPELQALAFMAGANSI 291 (335)
T ss_pred HCCcceeEccCCcccccHHHHHHHHHhcccee
Confidence 22334444332 2344455555544444
No 102
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=96.80 E-value=0.15 Score=44.29 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCc-H--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGI-V--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~-~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
-.+.+.++++.+++.+. ...++++|.-. . +.++.+.+++..+.|.+-+-+.+++..++.+ .+..+.+++.++
T Consensus 86 ~~~~~~~i~~~l~~~~~---~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i--nKg~t~~~~~~a 160 (313)
T TIGR01210 86 PKETRNYIFEKIAQRDN---LKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSI--NKGSTFEDFIRA 160 (313)
T ss_pred CHHHHHHHHHHHHhcCC---cceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh--CCCCCHHHHHHH
Confidence 45677788888876431 23577877542 2 3677777777422588999999999997543 334578899999
Q ss_pred HHHHHHhcCCcEEEEEEEe--CCCC--CCHHHHHHHHHHHhcCCceEEEeecCCCCCC---------CCccCCcHHHHHH
Q 028700 84 LKEYQKNSQQKIFIEYIML--DGVN--DEEQHAHQLGKLLETFQVVVNLIPFNPIGSV---------SQFRTSSDDKVSS 150 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lI--pGiN--Ds~e~i~~l~~~l~~~~~~v~lip~~~~g~~---------~~~~~~~~e~l~~ 150 (205)
++.+. ..|..|...+ ++ ||.+ ++.+++.+.++++..++..|.+.|+++.. + ..|.+|....+.+
T Consensus 161 i~~~~-~~Gi~v~~~~-i~G~P~~se~ea~ed~~~ti~~~~~l~~~vs~~~l~v~~-gT~l~~~~~~G~~~pp~lws~~e 237 (313)
T TIGR01210 161 AELAR-KYGAGVKAYL-LFKPPFLSEKEAIADMISSIRKCIPVTDTVSINPTNVQK-GTLVEFLWNRGLYRPPWLWSVAE 237 (313)
T ss_pred HHHHH-HcCCcEEEEE-EecCCCCChhhhHHHHHHHHHHHHhcCCcEEEECCEEeC-CCHHHHHHHcCCCCCCCHHHHHH
Confidence 98544 4676655543 33 4433 23455666778887776567777777653 3 3466775444433
Q ss_pred -HHHHHHhcCCceEEe-----cccccccccccccccccccccccCCC
Q 028700 151 -FQKILRGSYNIRTTV-----RKQMGQDISGACGQLVVNLPDKISAK 191 (205)
Q Consensus 151 -~~~~l~~~~Gi~~~i-----~~~~g~d~~~~Cgql~~~~~~~~~~~ 191 (205)
+++. . +.+..+.. +..+|..=|+-|-.....++.+-|..
T Consensus 238 ~l~e~-~-~~~~~~~~d~~g~~~~rg~~nc~~c~~~~~~~~~~~~~~ 282 (313)
T TIGR01210 238 VLKEA-K-KIGAEVLSDPVGAGSDRGAHNCGKCDKRVKEAIRKFSLT 282 (313)
T ss_pred HHHHH-H-hhCCeEEecCCCCCCcCCCcCcchhhHHHHHHHHHhccc
Confidence 4444 3 23443332 12244333555555555555554443
No 103
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=96.78 E-value=0.011 Score=53.21 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=97.7
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
.|||-+. ..+-.+++.++++.+ ..-+-||-..| .+..+.+. ..+.+|+++...+.-+.+-.+.-++-++.
T Consensus 362 Vgepi~y-p~in~f~k~lH~k~i-----ssflvtnaq~pe~~rnvk~v---tqlyvsvda~Tktslk~idrPlfkdFwEr 432 (601)
T KOG1160|consen 362 VGEPIMY-PEINPFAKLLHQKLI-----SSFLVTNAQFPEDIRNVKPV---TQLYVSVDASTKTSLKKIDRPLFKDFWER 432 (601)
T ss_pred ecccccc-hhhhHHHHHHHhccc-----hHHhcccccChHHHhchhhh---heeEEEEeecchhhhcCCCCchHHHHHHH
Confidence 4899988 559999999999877 44555665444 56555554 46889999999998888755433334566
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC-CceEEEeecCCCCCCCCc------cCCcHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-QVVVNLIPFNPIGSVSQF------RTSSDDKVSSFQ 152 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~-~~~v~lip~~~~g~~~~~------~~~~~e~l~~~~ 152 (205)
.++.++... +...+-++|+.|+.|+|.+ ++.+-.++++.- ...|++.-....| .... .-|..|++-+|.
T Consensus 433 ~~d~l~~lk-~K~qrtvyRlTlVkg~n~d--d~~Ayfnlv~rglp~fieVkGvty~g-es~~s~lTm~nvp~~Ee~v~Fv 508 (601)
T KOG1160|consen 433 FLDSLKALK-KKQQRTVYRLTLVKGWNSD--DLPAYFNLVSRGLPDFIEVKGVTYCG-ESELSNLTMTNVPWHEEVVEFV 508 (601)
T ss_pred HHHHHHHHH-HhhcceEEEEEEecccccc--ccHHHHHHHhccCCceEEEeceeEec-ccccCcccccCccHHHHHHHHH
Confidence 666666443 3445789999999999987 677777777643 3577777666666 2221 235567776666
Q ss_pred HHHH
Q 028700 153 KILR 156 (205)
Q Consensus 153 ~~l~ 156 (205)
..|.
T Consensus 509 ~eL~ 512 (601)
T KOG1160|consen 509 FELV 512 (601)
T ss_pred HHHH
Confidence 6553
No 104
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=96.77 E-value=0.062 Score=49.16 Aligned_cols=118 Identities=9% Similarity=0.096 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCC-cH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 5 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVG-IV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 5 llq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G-~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
+.+.+.+.++++.+++.++ .....+.. .. ..++.+.+.+. ..+.+.+.+.+++..+++- +..+.+++.+
T Consensus 257 ~~~~~~~~~l~~~l~~~~i-----~~~~~~~~~~~~e~l~~l~~aG~-~~v~iGiES~s~~~L~~~~---K~~~~~~~~~ 327 (472)
T TIGR03471 257 TDDKPRAEEIARKLGPLGV-----TWSCNARANVDYETLKVMKENGL-RLLLVGYESGDQQILKNIK---KGLTVEIARR 327 (472)
T ss_pred CCCHHHHHHHHHHHhhcCc-----eEEEEecCCCCHHHHHHHHHcCC-CEEEEcCCCCCHHHHHHhc---CCCCHHHHHH
Confidence 3466778888888887665 23233222 22 35777777776 4788999999999999863 3457888888
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCC
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPI 134 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~ 134 (205)
.++.+ ++.|..+... +|=|+ .++.+++.+..+|+.+++. .+.+-.+.|+
T Consensus 328 ~i~~~-~~~Gi~v~~~--~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~ 378 (472)
T TIGR03471 328 FTRDC-HKLGIKVHGT--FILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPY 378 (472)
T ss_pred HHHHH-HHCCCeEEEE--EEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccC
Confidence 88744 4466554444 45465 7899999999999998863 4555455554
No 105
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.74 E-value=0.063 Score=49.07 Aligned_cols=125 Identities=13% Similarity=0.221 Sum_probs=86.0
Q ss_pred CccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEc-CCc--HH-HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGL-PFQVSPKRITVST-VGI--VH-AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARA 74 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T-~G~--~~-~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~ 74 (205)
|+++.+.+.+.++++.+.+. |+ .++.+.| +.. .+ .++.+... +. ..+.+.+.+.+++..+.+- +.
T Consensus 215 G~d~~~~~~l~~Ll~~l~~~~gi----~~ir~~~~~p~~i~~ell~~l~~~~~~~-~~v~lglQSgsd~vLk~m~---R~ 286 (459)
T PRK14338 215 GHDLPGRPDLADLLEAVHEIPGL----ERLRFLTSHPAWMTDRLIHAVARLPKCC-PHINLPVQAGDDEVLKRMR---RG 286 (459)
T ss_pred ccccCChHHHHHHHHHHHhcCCc----ceEEEEecChhhcCHHHHHHHhcccccc-cceecCcccCCHHHHHhcc---CC
Confidence 56654445688888888774 33 1344433 322 23 34444442 22 2677999999999999864 34
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
++.+++++.++.+.+ ....+.+..-+|=|+ +++++++++.++|+++++. .+++.+|.|..
T Consensus 287 ~t~e~~~~~i~~lr~-~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i~~ysp~p 348 (459)
T PRK14338 287 YTVARYRELIARIRE-AIPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHIAAYSPRP 348 (459)
T ss_pred CCHHHHHHHHHHHHH-hCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEEEecCCCC
Confidence 678999999886655 334567776666554 5889999999999999984 78899999874
No 106
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=96.72 E-value=0.24 Score=45.15 Aligned_cols=152 Identities=12% Similarity=0.092 Sum_probs=104.5
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCc--H-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGI--V-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~--~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|-|+ +..+.+.++++.+++. .+. ....++++++=. . ..++.+.+.|. .++.+-+-+.|++..+.+-. ..+
T Consensus 123 GTPs~L~~~~l~~ll~~i~~~~~l~-~~~eitiE~~p~~~t~e~l~~l~~aGv-nRiSiGVQSf~d~vLk~lgR---~~~ 197 (449)
T PRK09058 123 GTPTALSAEDLARLITALREYLPLA-PDCEITLEGRINGFDDEKADAALDAGA-NRFSIGVQSFNTQVRRRAGR---KDD 197 (449)
T ss_pred CccccCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCcCcCCHHHHHHHHHcCC-CEEEecCCcCCHHHHHHhCC---CCC
Confidence 6677 4778888888888764 331 234688987632 2 47888888887 48889999999999998743 456
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCC---------CccCC-c
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVS---------QFRTS-S 144 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~---------~~~~~-~ 144 (205)
.+++.+.++.+.+ .| ...+++=||-| -+++.+++.+-++++..++ .+|.+-++.+.. +. ++..| +
T Consensus 198 ~~~~~~~i~~l~~-~g-~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~p-gT~l~~~~~~g~l~~~~~ 274 (449)
T PRK09058 198 REEVLARLEELVA-RD-RAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLP-GTPLAKAVEKGKLPPPAT 274 (449)
T ss_pred HHHHHHHHHHHHh-CC-CCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCC-CCHHHHHHHcCCCCCCCC
Confidence 7888888886554 44 13344556655 3478889999999999887 478888888763 32 23345 5
Q ss_pred HHHHHHH----HHHHHhcCCce
Q 028700 145 DDKVSSF----QKILRGSYNIR 162 (205)
Q Consensus 145 ~e~l~~~----~~~l~~~~Gi~ 162 (205)
+++..++ .+.+. ++|..
T Consensus 275 ~~~~~~my~~~~~~L~-~~Gy~ 295 (449)
T PRK09058 275 PAERADMYAYGVEFLA-KAGWR 295 (449)
T ss_pred HHHHHHHHHHHHHHHH-HCCCe
Confidence 5444333 45566 57864
No 107
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=96.67 E-value=0.058 Score=47.58 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEE----------cCCcH--HHHHHHhhcCCCceEE-EeecCCCHHhhhhhcCCCC
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVS----------TVGIV--HAINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAAR 73 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~----------T~G~~--~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i~~~~~ 73 (205)
-.+.+.++++.+|+. .|..++..- +.|.. ..+++|.+.|++ .+. ..+.+.+++.++++.+.
T Consensus 110 ~~~~~~e~i~~Ik~~---~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld-~~~~~g~E~~~~~v~~~i~~~-- 183 (351)
T TIGR03700 110 PFEWYLDMIRTLKEA---YPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLD-SMPGGGAEIFAEEVRQQICPE-- 183 (351)
T ss_pred CHHHHHHHHHHHHHH---CCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cCCCCcccccCHHHHhhcCCC--
Confidence 457899999999886 222244331 25554 358899999874 554 46778899999998754
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc----eEEEeecC------CCCCCCCccCC
Q 028700 74 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV----VVNLIPFN------PIGSVSQFRTS 143 (205)
Q Consensus 74 ~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~----~v~lip~~------~~g~~~~~~~~ 143 (205)
+.+.++.++.++.+.+ .|.+ +..-+|=|.-.++++..+.+..++++.. -..++|++ |++ ...+.++
T Consensus 184 ~~~~~~~l~~i~~a~~-~Gi~--~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~-~~~~~~~ 259 (351)
T TIGR03700 184 KISAERWLEIHRTAHE-LGLK--TNATMLYGHIETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLN-RLLAKGP 259 (351)
T ss_pred CCCHHHHHHHHHHHHH-cCCC--cceEEEeeCCCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCccc-CCCCCCC
Confidence 3467788888875444 5644 4555677788899888888888888753 23677775 221 2222556
Q ss_pred cHHHHHHHHHHHH
Q 028700 144 SDDKVSSFQKILR 156 (205)
Q Consensus 144 ~~e~l~~~~~~l~ 156 (205)
+..+..+...+++
T Consensus 260 ~~~e~lr~iA~~R 272 (351)
T TIGR03700 260 TGLDDLKTLAVSR 272 (351)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555543
No 108
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=96.45 E-value=0.18 Score=45.48 Aligned_cols=117 Identities=12% Similarity=0.221 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcC-CCCCCCCcEEEEcC---CcHHH-HHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 10 ALVEAVRIMTGL-PFQVSPKRITVSTV---GIVHA-INKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 10 ~l~~~l~~lk~~-~i~~~~~~~~v~T~---G~~~~-~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
.+.++++.+++. |+ ..+.+++. .+.+. ++.+.+.+ . ..+.+.+-|.+++..+.+- +.++.+++.+
T Consensus 207 ~l~~Ll~~l~~~~g~----~~i~~~~~~p~~i~~ell~~m~~~~~~~-~~l~igiES~s~~vLk~m~---R~~~~~~~~~ 278 (429)
T TIGR00089 207 NLADLLRELSKIDGI----ERIRFGSSHPDDVTDDLIELIAENPKVC-KHLHLPVQSGSDRILKRMN---RKYTREEYLD 278 (429)
T ss_pred CHHHHHHHHhcCCCC----CEEEECCCChhhcCHHHHHHHHhCCCcc-CceeeccccCChHHHHhCC---CCCCHHHHHH
Confidence 477777777664 33 24666542 22233 44444442 3 2678999999999988753 3567888888
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
.++.+.+ .+..+.+..-+|=|+ +++++++.+.++|+++++ ..+.+.+|.|..
T Consensus 279 ~i~~lr~-~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~p 332 (429)
T TIGR00089 279 IVEKIRA-KIPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRP 332 (429)
T ss_pred HHHHHHH-HCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCEeeccccCCCC
Confidence 8875544 454577777788776 899999999999999997 478888888874
No 109
>PRK07360 FO synthase subunit 2; Reviewed
Probab=96.18 E-value=0.23 Score=44.15 Aligned_cols=121 Identities=12% Similarity=0.194 Sum_probs=83.5
Q ss_pred ccCCC-HHHHHHHHHHhhcCCCCCCCCcEEEE----------cCCcH--HHHHHHhhcCCCceEE-EeecCCCHHhhhhh
Q 028700 3 EPLNN-YAALVEAVRIMTGLPFQVSPKRITVS----------TVGIV--HAINKFHSDLPGLNLA-VSLHAPVQDVRCQI 68 (205)
Q Consensus 3 EPllq-~~~l~~~l~~lk~~~i~~~~~~~~v~----------T~G~~--~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i 68 (205)
.|... .+++.++++.+|+. ++..+++.. +.|.. ..+++|.++|++ .+. -+--..+++.++++
T Consensus 118 ~p~~~~~e~~~~~i~~ik~~---~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld-~~~~t~~e~l~~~vr~~i 193 (371)
T PRK07360 118 HPAADSLEFYLEILEAIKEE---FPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLD-SMPGTAAEILVDEVRRII 193 (371)
T ss_pred CCCCCcHHHHHHHHHHHHHh---CCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCC-cCCCcchhhccHHHHHhh
Confidence 46665 78999999999975 222255532 46765 368999999975 553 23444577788777
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc----eEEEeecC
Q 028700 69 MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV----VVNLIPFN 132 (205)
Q Consensus 69 ~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~----~v~lip~~ 132 (205)
.|. +.+.+..++.++.+ ++.| +.+..-+|=|...+.++..+.+.+++++.. -..+||++
T Consensus 194 ~p~--~~s~~~~l~~i~~a-~~~G--l~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~ 256 (371)
T PRK07360 194 CPE--KIKTAEWIEIVKTA-HKLG--LPTTSTMMYGHVETPEHRIDHLLILREIQQETGGITEFVPLP 256 (371)
T ss_pred CCC--CCCHHHHHHHHHHH-HHcC--CCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEecc
Confidence 654 34566778888744 3355 445667788888999999999999998863 23567765
No 110
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.94 E-value=0.56 Score=42.65 Aligned_cols=116 Identities=13% Similarity=0.237 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEcC-C--cHH-HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHH
Q 028700 11 LVEAVRIMTGLPFQVSPKRITVSTV-G--IVH-AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 84 (205)
Q Consensus 11 l~~~l~~lk~~~i~~~~~~~~v~T~-G--~~~-~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l 84 (205)
+.++++.+.+.++ .++.+++. . +.+ .++.+... +. ..+.+.+.+.+++..+.+ .+.++.+++++.+
T Consensus 207 ~~~Ll~~l~~~~i----~~ir~~~~~p~~i~~ell~~l~~~~~g~-~~l~igvQSgs~~vLk~m---~R~~~~~~~~~~v 278 (440)
T PRK14334 207 FAELLRLVGASGI----PRVKFTTSHPMNFTDDVIAAMAETPAVC-EYIHLPVQSGSDRVLRRM---AREYRREKYLERI 278 (440)
T ss_pred HHHHHHHHHhcCC----cEEEEccCCcccCCHHHHHHHHhcCcCC-CeEEeccccCCHHHHHHh---CCCCCHHHHHHHH
Confidence 5566666654333 14555442 2 223 35555443 23 368899999999998876 3456788888888
Q ss_pred HHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 85 KEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 85 ~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
+.+.+ .+..+.+++-+|=|+ .++++++++.++|+..++ ..+.+.+|.|..
T Consensus 279 ~~lr~-~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~f~ysp~p 330 (440)
T PRK14334 279 AEIRE-ALPDVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYMFIYSPRP 330 (440)
T ss_pred HHHHH-hCCCcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeeeeEeeCCC
Confidence 86554 565677888777664 588999999999999987 478888998875
No 111
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=95.84 E-value=0.8 Score=41.64 Aligned_cols=145 Identities=9% Similarity=0.089 Sum_probs=95.6
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCc--H-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGI--V-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~--~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
|-|++-.+.+.++++.+++. + +...++++++=. . +.++.+... .+ ++.+-+-+.|++..+.+-+.+.....+
T Consensus 110 GTPs~l~~~L~~ll~~i~~~-f--~i~eis~E~~P~~lt~e~L~~l~~~-vn-rlsiGVQS~~d~vLk~~gR~h~~~~~~ 184 (433)
T PRK08629 110 GTTTILEDELAKTLELAKKL-F--SIKEVSCESDPNHLDPPKLKQLKGL-ID-RLSIGVQSFNDDILKMVDRYEKFGSGQ 184 (433)
T ss_pred CccccCHHHHHHHHHHHHHh-C--CCceEEEEeCcccCCHHHHHHHHHh-CC-eEEEecCcCCHHHHHHcCCCCChhHHH
Confidence 56887678888888888765 2 223688877643 2 356666555 43 888999999999998875544333445
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCC------CccCCcHHHHHH
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVS------QFRTSSDDKVSS 150 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~------~~~~~~~e~l~~ 150 (205)
.+++.++... +.-..+++=+|-|+ +.+.+++.+-++++.+++ .+|.+-|++.-. .. +...|+++....
T Consensus 185 ~~~~~l~~~~---~~~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~-~t~~~~~~~~~~p~~d~~~~ 260 (433)
T PRK08629 185 ETFEKIMKAK---GLFPIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSH-QTRKSVKGSLGASQKDNERQ 260 (433)
T ss_pred HHHHHHHHHh---ccCCeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceecc-CchhhhcCCCCCcCHHHHHH
Confidence 5566665432 21224667777553 468899999999999997 478888887542 21 234566655555
Q ss_pred HHHHH
Q 028700 151 FQKIL 155 (205)
Q Consensus 151 ~~~~l 155 (205)
+.+..
T Consensus 261 ~~~~~ 265 (433)
T PRK08629 261 YYQII 265 (433)
T ss_pred HHHHH
Confidence 55553
No 112
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=95.82 E-value=0.017 Score=43.46 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=37.7
Q ss_pred CCccCC--CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-H-----HHHHhhcCCCceEEEeecCCCHHhh
Q 028700 1 MGEPLN--NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-A-----INKFHSDLPGLNLAVSLHAPVQDVR 65 (205)
Q Consensus 1 mGEPll--q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~-----~~~l~~~~~~~~l~~slk~~d~~~~ 65 (205)
.|||++ +.+.+.++++.+++.+. ..+.+.|||... . +.+++.. +.+.+|+.....+.+
T Consensus 60 GGEPll~~~~~~l~~i~~~~k~~~~----~~~~~~tng~~~~~~~~~~~~~~~~~---~~vsvd~~~~~~~~~ 125 (139)
T PF13353_consen 60 GGEPLLHENYDELLEILKYIKEKFP----KKIIILTNGYTLDELLDELIEELLDE---IDVSVDGPFDENKED 125 (139)
T ss_dssp CSTGGGHHSHHHHHHHHHHHHHTT-----SEEEEEETT--HHHHHHHHHHHHHHT---ESEEEE---SSHHHH
T ss_pred CCCeeeeccHhHHHHHHHHHHHhCC----CCeEEEECCCchhHHHhHHHHhccCc---cEEEEEEechhhccc
Confidence 399999 99999999999999843 368999999862 1 3455554 346666666655543
No 113
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=95.62 E-value=1.1 Score=40.35 Aligned_cols=118 Identities=13% Similarity=0.262 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcC-CCCCCCCcEEEEcCC---cHH-HHHHHhhcC-CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 10 ALVEAVRIMTGL-PFQVSPKRITVSTVG---IVH-AINKFHSDL-PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 10 ~l~~~l~~lk~~-~i~~~~~~~~v~T~G---~~~-~~~~l~~~~-~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
.+.++++.+++. ++ ..+.+++.- +.+ .++.+...+ .-..+.+.+-|.+++..+.+- +.++.+++.+.
T Consensus 206 ~l~~Ll~~l~~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~---R~~~~~~~~~~ 278 (414)
T TIGR01579 206 SLAKLLEQILQIPGI----KRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMR---RKYTRDDFLKL 278 (414)
T ss_pred cHHHHHHHHhcCCCC----cEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcC---CCCCHHHHHHH
Confidence 466777777653 22 245554321 112 344444332 112677999999999998853 34678888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
++.+.+ ....+.+..-+|=|+ ++++|++++.++|++.++ ..+.+-+|.|..
T Consensus 279 v~~l~~-~~~gi~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~p 331 (414)
T TIGR01579 279 VNKLRS-VRPDYAFGTDIIVGFPGESEEDFQETLRMVKEIEFSHLHIFPYSARP 331 (414)
T ss_pred HHHHHH-hCCCCeeeeeEEEECCCCCHHHHHHHHHHHHhCCCCEEEeeecCCCC
Confidence 885544 223466777777665 799999999999999987 478888999974
No 114
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=95.58 E-value=0.026 Score=44.01 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=39.0
Q ss_pred CccCCC--HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HH----HHHHhhcCCCceEEEeecCCCHHhh
Q 028700 2 GEPLNN--YAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HA----INKFHSDLPGLNLAVSLHAPVQDVR 65 (205)
Q Consensus 2 GEPllq--~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~----~~~l~~~~~~~~l~~slk~~d~~~~ 65 (205)
||||+| .+.+.++++++++. .+...+. .|||+. .. .++++++ +++++|-+...++..
T Consensus 74 GEPl~~~~~~~l~~l~~~~k~~---~~~~~i~-~~tGy~~eel~~~~~~~l~~---~DvlvDG~~~~~~~~ 137 (154)
T PRK11121 74 GDPLHPQNVPDILKLVQRVKAE---CPGKDIW-VWTGYKLDELNAAQRQVVDL---IDVLVDGKFVQDLAD 137 (154)
T ss_pred CCccchhhHHHHHHHHHHHHHH---CCCCCEE-EecCCCHHHHHHHHHHHHhh---CCEEEechhhhhccc
Confidence 899985 48999999999875 2223454 468875 22 3356665 358899988777663
No 115
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=95.55 E-value=0.33 Score=42.88 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=63.8
Q ss_pred CccCC-CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--H-----HHHHHhhc-CCCceEEEeecCCCHHhhhhhcCCC
Q 028700 2 GEPLN-NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--H-----AINKFHSD-LPGLNLAVSLHAPVQDVRCQIMPAA 72 (205)
Q Consensus 2 GEPll-q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~-----~~~~l~~~-~~~~~l~~slk~~d~~~~~~i~~~~ 72 (205)
|+||+ ....+..+++++++. .-.+.+-+-|=..+ | .+-+++.. ...+.++..++|.+ +++
T Consensus 167 GDPL~ls~~~L~~ll~~L~~I---pHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~-----Eit--- 235 (369)
T COG1509 167 GDPLSLSDKKLEWLLKRLRAI---PHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPN-----EIT--- 235 (369)
T ss_pred CCccccCHHHHHHHHHHHhcC---CceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChh-----hcC---
Confidence 89995 677888888888763 11123444554432 3 23333333 22223334444443 232
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
....++++++.. -|..+.=..||+.|+||+.+-+.+|.+-+...+
T Consensus 236 -----~e~~~A~~~L~~-aGv~l~NQsVLLrGVND~~evl~~L~~~L~~~g 280 (369)
T COG1509 236 -----PEAREACAKLRD-AGVPLLNQSVLLRGVNDDPEVLKELSRALFDAG 280 (369)
T ss_pred -----HHHHHHHHHHHH-cCceeecchheecccCCCHHHHHHHHHHHHHcC
Confidence 234555654443 688888889999999999998888887777665
No 116
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=95.40 E-value=0.59 Score=40.74 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=71.5
Q ss_pred HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHH
Q 028700 39 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118 (205)
Q Consensus 39 ~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~ 118 (205)
..++.+.+.+ ..+.+.+.+.++...+.+-........++.++.++.+.+ .|.+ +..-+|=|+.++.+++.+.+.+
T Consensus 116 e~i~~Lk~ag--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~-~Gi~--~~~~~i~G~gEt~ed~~~~l~~ 190 (336)
T PRK06245 116 EEMEKLKEVN--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGK-LKIP--FTTGILIGIGETWEDRAESLEA 190 (336)
T ss_pred HHHHHHHHhC--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHH-cCCc--eeeeeeeECCCCHHHHHHHHHH
Confidence 3566666654 234566788888887655222223356777888875443 4544 4444566889999999998778
Q ss_pred HhcCC------ceEEEeecCCCCCCC---CccCCcHHHHHHHHHHHH
Q 028700 119 LETFQ------VVVNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 119 l~~~~------~~v~lip~~~~g~~~---~~~~~~~e~l~~~~~~l~ 156 (205)
++.+. ..+-+.+|.|.+ +. .+.+++.++..++....+
T Consensus 191 l~~l~~~~gg~~~~~~~~f~P~~-~T~~~~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 191 IAELHERYGHIQEVIIQNFSPKP-GIPMENHPEPSLEEMLRVVALAR 236 (336)
T ss_pred HHHHHHhhCCCcEEecCCCcCCC-CCCcccCCCcCHHHHHHHHHHHH
Confidence 77663 256788888875 33 345677777766555543
No 117
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=95.31 E-value=0.04 Score=42.76 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=32.7
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcC
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDL 48 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~ 48 (205)
|| +|++++.++++.+|++|+ +++++|+|..+ ..+++++..
T Consensus 70 GE--l~~~~l~~ll~~lk~~Gl-----~i~l~Tg~~~~~~~~~il~~i 110 (147)
T TIGR02826 70 GE--WNREALLSLLKIFKEKGL-----KTCLYTGLEPKDIPLELVQHL 110 (147)
T ss_pred hh--cCHHHHHHHHHHHHHCCC-----CEEEECCCCCHHHHHHHHHhC
Confidence 89 688999999999999887 89999998764 345666654
No 118
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.015 Score=47.85 Aligned_cols=32 Identities=38% Similarity=0.663 Sum_probs=28.2
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH 39 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~ 39 (205)
|||++| +++.++++.++++|+ +++++|||..+
T Consensus 80 GEP~~~-~~l~~Ll~~l~~~g~-----~~~lETngti~ 111 (212)
T COG0602 80 GEPLLQ-PNLLELLELLKRLGF-----RIALETNGTIP 111 (212)
T ss_pred CcCCCc-ccHHHHHHHHHhCCc-----eEEecCCCCcc
Confidence 999766 679999999999888 89999999874
No 119
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.16 E-value=1.8 Score=39.51 Aligned_cols=116 Identities=13% Similarity=0.211 Sum_probs=79.2
Q ss_pred HHHHHHHhhcC-CCCCCCCcEEEEcC---CcHHH-HHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 11 LVEAVRIMTGL-PFQVSPKRITVSTV---GIVHA-INKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 11 l~~~l~~lk~~-~i~~~~~~~~v~T~---G~~~~-~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
+.++++.+.+. ++ .++.+++. .+.+. ++.+...+ . ..+.+.+-|.+++..+++- +.++.+++.+.
T Consensus 220 l~~Ll~~l~~~~~~----~~ir~~~~~p~~~~~ell~~m~~~~~~~-~~l~lgvQSgsd~vLk~m~---R~~t~~~~~~~ 291 (449)
T PRK14332 220 FAGLIQMLLDETTI----ERIRFTSPHPKDFPDHLLSLMAKNPRFC-PNIHLPLQAGNTRVLEEMK---RSYSKEEFLDV 291 (449)
T ss_pred HHHHHHHHhcCCCc----ceEEEECCCcccCCHHHHHHHHhCCCcc-ceEEECCCcCCHHHHHhhC---CCCCHHHHHHH
Confidence 55666665443 22 24555542 22233 33333333 2 2677889999999988864 45678888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
++.+.+ ....+.+++-+|=|+ +++++++++.++|+++++ ..+.+.+|.|-.
T Consensus 292 i~~lr~-~~p~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~~f~ys~~~ 344 (449)
T PRK14332 292 VKEIRN-IVPDVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAFMFKYSERE 344 (449)
T ss_pred HHHHHH-hCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 876554 344577778788776 789999999999999998 478889999864
No 120
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.14 E-value=2.4 Score=39.38 Aligned_cols=119 Identities=11% Similarity=0.169 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhcC-CCCCCCCcEEEEcC---CcHH-HHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCHHHH
Q 028700 8 YAALVEAVRIMTGL-PFQVSPKRITVSTV---GIVH-AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKL 80 (205)
Q Consensus 8 ~~~l~~~l~~lk~~-~i~~~~~~~~v~T~---G~~~-~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i 80 (205)
...+.++++.+.+. ++ .++.+++. .+.+ .++.+.+.+ . ..+.+-+-|.+++..+.+ .+.++.+++
T Consensus 223 ~~~l~~Ll~~l~~i~~l----~~ir~~~~~p~~~~~ell~~m~~~g~~~-~~l~lglQSgsd~iLk~m---~R~~t~~~~ 294 (502)
T PRK14326 223 RGAFSKLLRACGEIDGL----ERVRFTSPHPAEFTDDVIEAMAETPNVC-PQLHMPLQSGSDRVLRAM---RRSYRSERF 294 (502)
T ss_pred HHHHHHHHHHHHhcCCc----cEEEEeccChhhCCHHHHHHHHhcCCcC-CcEEeccCCCCHHHHHhc---CCCCCHHHH
Confidence 34566777777643 22 23555442 1122 344444443 2 367799999999999885 345678888
Q ss_pred HHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 81 MNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 81 ~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
.+.++.+.+ ....+.+..-+|=|+ +++++++++.++|++.++. .+.+.+|.|..
T Consensus 295 ~~~v~~lr~-~~~~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~~~~f~~sp~p 350 (502)
T PRK14326 295 LGILEKVRA-AMPDAAITTDIIVGFPGETEEDFQATLDVVREARFSSAFTFQYSKRP 350 (502)
T ss_pred HHHHHHHHH-hCCCCeEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCC
Confidence 888886555 344566777777665 6899999999999998873 57777888874
No 121
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=95.03 E-value=1.7 Score=40.54 Aligned_cols=122 Identities=8% Similarity=0.159 Sum_probs=85.0
Q ss_pred CcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCC
Q 028700 28 KRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG 104 (205)
Q Consensus 28 ~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpG 104 (205)
..++++|.=.. +.++.+..++. ..+.+-+-+.|++..+.+- +..+.+++.+.++.+ +..|. .+.+=||+|
T Consensus 193 vgitiEtRPD~i~~e~L~~L~~~G~-~rVslGVQS~~d~VL~~in---Rght~~~v~~Ai~~l-r~~G~--~v~~~LM~G 265 (522)
T TIGR01211 193 VGLTIETRPDYCREEHIDRMLKLGA-TRVELGVQTIYNDILERTK---RGHTVRDVVEATRLL-RDAGL--KVVYHIMPG 265 (522)
T ss_pred EEEEEEEcCCcCCHHHHHHHHHcCC-CEEEEECccCCHHHHHHhC---CCCCHHHHHHHHHHH-HHcCC--eEEEEeecC
Confidence 36778885432 47888888886 5888999999999998864 456789999999844 44564 566678888
Q ss_pred C-CCCHHHHHHHHHHHhc---CC-ceEEEeecCCCCC--------CCCccCCcHHHHHHHHHHHH
Q 028700 105 V-NDEEQHAHQLGKLLET---FQ-VVVNLIPFNPIGS--------VSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 105 i-NDs~e~i~~l~~~l~~---~~-~~v~lip~~~~g~--------~~~~~~~~~e~l~~~~~~l~ 156 (205)
+ +++.++..+.++.+.. ++ ..|.+.|+..+.. ...|.+++.++..++...+.
T Consensus 266 LPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~ 330 (522)
T TIGR01211 266 LPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIK 330 (522)
T ss_pred CCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 5 6777777776666653 44 3677777665521 14577888777766555543
No 122
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=94.96 E-value=1.8 Score=39.23 Aligned_cols=117 Identities=12% Similarity=0.212 Sum_probs=79.7
Q ss_pred HHHHHHHHhhcC-CCCCCCCcEEEEcC---CcHH-HHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 10 ALVEAVRIMTGL-PFQVSPKRITVSTV---GIVH-AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 10 ~l~~~l~~lk~~-~i~~~~~~~~v~T~---G~~~-~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
.+.++++.+.+. ++ ..+.+++. .+.+ .++.+...+ . ..+.+.+-+.+++..+.+ .+.++.+++++
T Consensus 215 ~l~~Ll~~l~~~~~~----~~ir~~~~~p~~l~~ell~~l~~~g~~~-~~l~iglQSgsd~vLk~m---~R~~t~~~~~~ 286 (438)
T TIGR01574 215 DFSDLLRELSTIDGI----ERIRFTSSHPLDFDDDLIEVFANNPKLC-KSMHLPVQSGSSEILKLM---KRGYTREWYLN 286 (438)
T ss_pred cHHHHHHHHHhcCCc----eEEEEecCCcccCCHHHHHHHHhCCCcc-CceeeCCCcCCHHHHHhc---CCCCCHHHHHH
Confidence 366677777543 32 23555432 1122 355554443 2 267788999999998874 34567888888
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
.++.+.+ ....+.+.+-+|-|+ .++++++++.++|++.++ ..+.+.+|.|..
T Consensus 287 ~v~~ir~-~~~~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~~~~~~~~~sp~p 340 (438)
T TIGR01574 287 LVRKLRA-ACPNVSISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRP 340 (438)
T ss_pred HHHHHHH-hCCCCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCCCeeeeEEecCCC
Confidence 8886654 334567777777776 688999999999999987 478888988863
No 123
>PRK08444 hypothetical protein; Provisional
Probab=94.95 E-value=0.83 Score=40.47 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=89.4
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEEE----------cCCcH--HHHHHHhhcCCCceEEE-eecCCCHHhhhhhcC
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITVS----------TVGIV--HAINKFHSDLPGLNLAV-SLHAPVQDVRCQIMP 70 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v~----------T~G~~--~~~~~l~~~~~~~~l~~-slk~~d~~~~~~i~~ 70 (205)
|-..++.+.++++.+|+. +|..+++.= +.|.. ..+++|.+.|++ .+.- +....+++.|+++.|
T Consensus 108 p~~~~e~y~e~ir~Ik~~---~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~-~~~g~~aEi~~~~vr~~I~p 183 (353)
T PRK08444 108 PNYGYEWYLEIFKKIKEA---YPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVD-SMPGGGAEIFDEEVRKKICK 183 (353)
T ss_pred CCCCHHHHHHHHHHHHHH---CCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcc-cCCCCCchhcCHHHHhhhCC
Confidence 455678899999999976 333356641 34443 468899998864 4432 344568999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc----eEEEee--cCCCC-CCCCccCC
Q 028700 71 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV----VVNLIP--FNPIG-SVSQFRTS 143 (205)
Q Consensus 71 ~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~----~v~lip--~~~~g-~~~~~~~~ 143 (205)
. +.+-++.++.++.+ .+.|. ....-+|=|.=.+.++.-+.+..++++.. --.||| |+|-| +-...+++
T Consensus 184 ~--k~~~~~~~~i~~~a-~~~Gi--~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~ 258 (353)
T PRK08444 184 G--KVSSERWLEIHKYW-HKKGK--MSNATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFP 258 (353)
T ss_pred C--CCCHHHHHHHHHHH-HHcCC--CccceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCC
Confidence 5 34556666665533 23454 44666777888999999999999998852 123444 44433 11234456
Q ss_pred cHHHHHHHHHHH
Q 028700 144 SDDKVSSFQKIL 155 (205)
Q Consensus 144 ~~e~l~~~~~~l 155 (205)
+..+..+...++
T Consensus 259 ~~~e~Lr~iAi~ 270 (353)
T PRK08444 259 SSQEILKTIAIS 270 (353)
T ss_pred CHHHHHHHHHHH
Confidence 666666655544
No 124
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=94.64 E-value=2.4 Score=39.11 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCC-CCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVS-PKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~-~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
...+.+.++++.+++.....+ .+.++|+ .|.. ..+++|.+++.+ .+.+-.-+.+++.++++.|...+..++.-++
T Consensus 146 ~~~eyi~e~i~~I~~~~~~~g~i~~v~in-ig~lt~eey~~LkeaGv~-~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~ 223 (469)
T PRK09613 146 CDIEYILESIKTIYSTKHGNGEIRRVNVN-IAPTTVENYKKLKEAGIG-TYQLFQETYHKPTYEKMHPSGPKSDYDWRLT 223 (469)
T ss_pred CCHHHHHHHHHHHHHhccccCcceeeEEE-eecCCHHHHHHHHHcCCC-EEEeccccCCHHHHHhcCCCCCCCCHHHHHH
Confidence 357888888888886310001 1245665 3433 479999999974 7888889999999999988666778888899
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC----CceEEEee---cCCCCCCCCc----cCCcHHHHHHH
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF----QVVVNLIP---FNPIGSVSQF----RTSSDDKVSSF 151 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~----~~~v~lip---~~~~g~~~~~----~~~~~e~l~~~ 151 (205)
.++.+.+ .|.+ .|.+=+|=|+.++.++.-.++..++.+ ++.++-++ ++|.. +..+ .+.+++++.++
T Consensus 224 t~~rA~~-aGi~-~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~-Gtpl~~~~~~vsd~e~lri 300 (469)
T PRK09613 224 AMDRAME-AGID-DVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPAD-GSDLENFPYLVSDEDFKKI 300 (469)
T ss_pred HHHHHHH-cCCC-eeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCC-CCCcccCCCCCCHHHHHHH
Confidence 9986554 4533 144456778999988887777777665 22222233 44542 3333 23577787777
Q ss_pred HHHHH
Q 028700 152 QKILR 156 (205)
Q Consensus 152 ~~~l~ 156 (205)
...++
T Consensus 301 iA~~R 305 (469)
T PRK09613 301 VAILR 305 (469)
T ss_pred HHHHH
Confidence 66654
No 125
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.63 E-value=2.3 Score=38.64 Aligned_cols=116 Identities=13% Similarity=0.175 Sum_probs=76.7
Q ss_pred HHHHHHHhhcC-CCCCCCCcEEEEcCC---cHH-HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 11 LVEAVRIMTGL-PFQVSPKRITVSTVG---IVH-AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 11 l~~~l~~lk~~-~i~~~~~~~~v~T~G---~~~-~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
+.++++.+.+. |+ .++.+++.- ..+ .++.+... +. ..+.+.+-|.+++..+++- +.++.+++.+.
T Consensus 214 ~~~Ll~~l~~~~g~----~~i~~~~~~p~~l~~ell~~~~~~~~~~-~~l~igiqSgsd~vLk~m~---R~~t~~~~~~~ 285 (437)
T PRK14331 214 FSELLYAVAEIDGV----ERIRFTTGHPRDLDEDIIKAMADIPQVC-EHLHLPFQAGSDRILKLMD---RGYTKEEYLEK 285 (437)
T ss_pred HHHHHHHHhcCCCc----cEEEEeccCcccCCHHHHHHHHcCCccC-CceecccccCChHHHHHcC---CCCCHHHHHHH
Confidence 56677766553 32 245555422 223 34444443 23 2677999999999988753 45678888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
++.+.+ ....+.+..=+|=|+ .++++++++.++|+++++. .+.+.+|.|..
T Consensus 286 v~~lr~-~~~gi~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i~~f~~sp~p 338 (437)
T PRK14331 286 IELLKE-YIPDITFSTDIIVGFPTETEEDFEETLDVLKKVEFEQVFSFKYSPRP 338 (437)
T ss_pred HHHHHH-hCCCCEEecCEEEECCCCCHHHHHHHHHHHHhcCcceeeeeEecCCC
Confidence 886544 323456666556443 5788999999999999974 67778898873
No 126
>PRK08445 hypothetical protein; Provisional
Probab=94.58 E-value=1.3 Score=39.06 Aligned_cols=111 Identities=10% Similarity=0.078 Sum_probs=79.6
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEEEc----------CCc--HHHHHHHhhcCCCceEE-EeecCCCHHhhhhhcC
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITVST----------VGI--VHAINKFHSDLPGLNLA-VSLHAPVQDVRCQIMP 70 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v~T----------~G~--~~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i~~ 70 (205)
|-+..+.+.++++.+++. +|..++.--| .|. ...+++|.++|++ .+. .-+-+.+++.++++.|
T Consensus 101 ~~~~~e~~~~l~~~Ik~~---~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~-~~~g~glE~~~d~v~~~~~p 176 (348)
T PRK08445 101 PKLKIEWYENLVSHIAQK---YPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLS-SIPGAGAEILSDRVRDIIAP 176 (348)
T ss_pred CCCCHHHHHHHHHHHHHH---CCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCC-CCCCCceeeCCHHHHHhhCC
Confidence 445688899999999986 2323443222 222 2468899999975 665 6799999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 71 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 71 ~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
. +.+.++.++.++.+ ++.| +.+..-+|=|.-.+.++..+.+.+++++.
T Consensus 177 k--~~t~~~~i~~i~~a-~~~G--i~~~sg~i~G~~Et~edr~~~l~~lreLq 224 (348)
T PRK08445 177 K--KLDSDRWLEVHRQA-HLIG--MKSTATMMFGTVENDEEIIEHWERIRDLQ 224 (348)
T ss_pred C--CCCHHHHHHHHHHH-HHcC--CeeeeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4 34566667777744 3345 66666678888899999999999999885
No 127
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.56 E-value=2.6 Score=38.32 Aligned_cols=116 Identities=9% Similarity=0.146 Sum_probs=77.1
Q ss_pred HHHHHHHhhcC-CCCCCCCcEEEEcCC---cHH-HHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 11 LVEAVRIMTGL-PFQVSPKRITVSTVG---IVH-AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 11 l~~~l~~lk~~-~i~~~~~~~~v~T~G---~~~-~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
+.++++.+.+. ++ .++.+.+.- +.+ .++.+...+ . ..+.+.+-|.+++..+.+ .+.++.+++++.
T Consensus 216 l~~Ll~~l~~~~~~----~~ir~~~~~P~~i~~ell~~l~~~~~~~-~~l~iglQSgsd~vLk~M---~R~~~~~~~~~~ 287 (439)
T PRK14328 216 FADLLRRVNEIDGL----ERIRFMTSHPKDLSDDLIEAIADCDKVC-EHIHLPVQSGSNRILKKM---NRHYTREYYLEL 287 (439)
T ss_pred HHHHHHHHHhcCCC----cEEEEecCChhhcCHHHHHHHHhCCCcC-ceeeeCCCcCCHHHHHhC---CCCCCHHHHHHH
Confidence 55666666542 22 235554321 122 344444432 2 267799999999998884 335678888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
++.+.+ ....+.+.+=+|=|+ +++++++++.++|++.++ ..+.+.+|.|..
T Consensus 288 i~~lr~-~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~~~~~~~sp~p 340 (439)
T PRK14328 288 VEKIKS-NIPDVAITTDIIVGFPGETEEDFEETLDLVKEVRYDSAFTFIYSKRK 340 (439)
T ss_pred HHHHHH-hCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCcccceEecCCC
Confidence 876554 334566676677665 789999999999999987 467888998873
No 128
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.41 E-value=3.6 Score=38.31 Aligned_cols=121 Identities=10% Similarity=0.139 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEEcCC---cHH-HHHHHhhcCCC-ceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHH
Q 028700 10 ALVEAVRIMTGLPFQVSPKRITVSTVG---IVH-AINKFHSDLPG-LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 84 (205)
Q Consensus 10 ~l~~~l~~lk~~~i~~~~~~~~v~T~G---~~~-~~~~l~~~~~~-~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l 84 (205)
.+.++++.+.+.++ .++.++|.- +.+ .++.+...+-. ..+.+-+-|.+++..+.+ .+.++.+++++.+
T Consensus 281 ~l~~Ll~~I~~~~i----~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M---~R~~t~e~~~~~v 353 (509)
T PRK14327 281 GLGDLMDEIRKIDI----PRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIM---ARKYTRESYLELV 353 (509)
T ss_pred HHHHHHHHHHhCCC----ceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhc---CCCCCHHHHHHHH
Confidence 36677777765433 256666632 112 34444444310 157799999999998775 3456788888888
Q ss_pred HHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCCC
Q 028700 85 KEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQ 139 (205)
Q Consensus 85 ~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~~ 139 (205)
+.+.+ ....+.+.+=+|=| -+++++++++.++|+..++ ..+.+.+|.|.. +..
T Consensus 354 ~~lr~-~~p~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d~~~~f~ysprp-GT~ 408 (509)
T PRK14327 354 RKIKE-AIPNVALTTDIIVGFPNETDEQFEETLSLYREVGFDHAYTFIYSPRE-GTP 408 (509)
T ss_pred HHHHH-hCCCcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEeeeeCCC-CCc
Confidence 86555 34456666555544 3478899999999999987 467888888874 433
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.30 E-value=0.98 Score=37.53 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=81.4
Q ss_pred HHHHHHHHhhcCCCCCCCCcE-EEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhh-cCCCCCCCHHHHHHHHHHH
Q 028700 10 ALVEAVRIMTGLPFQVSPKRI-TVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI-MPAARAFPLEKLMNALKEY 87 (205)
Q Consensus 10 ~l~~~l~~lk~~~i~~~~~~~-~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i-~~~~~~~~~~~i~~~l~~~ 87 (205)
...++++.+++.+- ...+ ++.++| ...++++.+.+.+ .+.+++...+ .|.+. .+.+....++++++.++ +
T Consensus 52 ~~~~~i~~l~~~~~---~~~~~~l~~~~-~~~i~~a~~~g~~-~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~-~ 123 (265)
T cd03174 52 DDWEVLRAIRKLVP---NVKLQALVRNR-EKGIERALEAGVD-EVRIFDSASE--THSRKNLNKSREEDLENAEEAIE-A 123 (265)
T ss_pred CHHHHHHHHHhccC---CcEEEEEccCc-hhhHHHHHhCCcC-EEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHH-H
Confidence 35667777776531 1245 777887 5568888888764 7788887765 44443 22333335777788887 4
Q ss_pred HHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 88 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 88 ~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
++..|..+.+.+.-+-+-=.+.+++.++++.+...++ .|.+ -+.. ...+++++.++.+.++
T Consensus 124 a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l---~Dt~-----G~~~P~~v~~li~~l~ 185 (265)
T cd03174 124 AKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISL---KDTV-----GLATPEEVAELVKALR 185 (265)
T ss_pred HHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEe---chhc-----CCcCHHHHHHHHHHHH
Confidence 4557777777765454401456689999999998874 3443 3321 2256677777766665
No 130
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=94.25 E-value=1.5 Score=38.16 Aligned_cols=77 Identities=9% Similarity=0.129 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-----c-eEEEeecCCC-C-CCCCccCCcHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-----V-VVNLIPFNPI-G-SVSQFRTSSDDKV 148 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-----~-~v~lip~~~~-g-~~~~~~~~~~e~l 148 (205)
.++.++.++.+.+ .|.+ +..-+|=|..+++++..+.+.+++.+. . .+-+.||+|. | +....++++..+.
T Consensus 148 ~~~~l~~i~~a~~-~Gi~--~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~ 224 (322)
T TIGR03550 148 PAVRLETIEDAGR-LKIP--FTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEM 224 (322)
T ss_pred HHHHHHHHHHHHH-cCCC--ccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHH
Confidence 3455666764433 5544 555566689999999999999998874 2 3445678776 3 1123455677777
Q ss_pred HHHHHHHH
Q 028700 149 SSFQKILR 156 (205)
Q Consensus 149 ~~~~~~l~ 156 (205)
.++...++
T Consensus 225 lr~iAv~R 232 (322)
T TIGR03550 225 LRTVAVAR 232 (322)
T ss_pred HHHHHHHH
Confidence 66555543
No 131
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=94.01 E-value=0.59 Score=40.72 Aligned_cols=117 Identities=12% Similarity=0.216 Sum_probs=81.0
Q ss_pred EEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhh-cCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEEEeCCCCCCH
Q 028700 32 VSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI-MPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEE 109 (205)
Q Consensus 32 v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i-~~~~~~~~~~~i~~~l~~~~~~~~-~~V~ir~~lIpGiNDs~ 109 (205)
+.-.+..+.+......+.| .+-+-+++++++.++++ .+.....+.+..++.+.+.+...+ .+|.+. ||=|.-.|+
T Consensus 125 i~~~~~~~~l~e~~klg~d-~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ih--liVglGesD 201 (339)
T COG2516 125 ITAVSLKEELEEYRKLGAD-YLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIH--LIVGLGESD 201 (339)
T ss_pred hhcccchHHHHHHHhcchh-hhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCccee--EEeccCCch
Confidence 3333334444444444433 56688999999999999 433335689999999998888776 555554 666677788
Q ss_pred HHHHHHHHHHhcCCceEEEeecCCCCCCC---CccCCcHHHHHHHH
Q 028700 110 QHAHQLGKLLETFQVVVNLIPFNPIGSVS---QFRTSSDDKVSSFQ 152 (205)
Q Consensus 110 e~i~~l~~~l~~~~~~v~lip~~~~g~~~---~~~~~~~e~l~~~~ 152 (205)
.++-+....+...+..|.|.-|-|+- +. +..+++-+...+++
T Consensus 202 ~~~ve~~~~v~~~g~~v~Lfaf~P~~-gt~me~r~~~pve~Yrk~q 246 (339)
T COG2516 202 KDIVETIKRVRKRGGIVSLFAFTPLK-GTQMENRKPPPVERYRKIQ 246 (339)
T ss_pred HHHHHHHHHHHhcCceEEEEEecccc-cccccCCCCCcHHHHHHHH
Confidence 88888888888888889999999974 43 34556656555543
No 132
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=93.88 E-value=3.4 Score=34.57 Aligned_cols=131 Identities=14% Similarity=0.186 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHH--HHHHHhhcCCCceEEEeecCC-CHHhhhhhcCCCCCCCHHHHHHHH
Q 028700 9 AALVEAVRIMTGL-PFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAP-VQDVRCQIMPAARAFPLEKLMNAL 84 (205)
Q Consensus 9 ~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~--~~~~l~~~~~~~~l~~slk~~-d~~~~~~i~~~~~~~~~~~i~~~l 84 (205)
+...+.+++++++ |+ +-.-..|+.. .++++.....| + +|++.+ |.+.-+++++.+ .+.++.+..+
T Consensus 74 ~kf~d~lK~lke~~~l------~inaHvGfvdE~~~eklk~~~vd--v-vsLDfvgDn~vIk~vy~l~--ksv~dyl~~l 142 (275)
T COG1856 74 WKFKDELKALKERTGL------LINAHVGFVDESDLEKLKEELVD--V-VSLDFVGDNDVIKRVYKLP--KSVEDYLRSL 142 (275)
T ss_pred HHHHHHHHHHHHhhCe------EEEEEeeeccHHHHHHHHHhcCc--E-EEEeecCChHHHHHHHcCC--ccHHHHHHHH
Confidence 4567888888887 54 3445567774 57777776543 2 555554 777888888874 4678888888
Q ss_pred HHHHHhcCCcEEEEEEEe---CCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCC---CccCCcHHHHHHHHHHHH
Q 028700 85 KEYQKNSQQKIFIEYIML---DGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS---QFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 85 ~~~~~~~~~~V~ir~~lI---pGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~---~~~~~~~e~l~~~~~~l~ 156 (205)
+ ++++.+.+|...+.+= .++.- +.++ ++.+..... .+-|.-++|.. +. ..++|+.++.-+..++.+
T Consensus 143 ~-~L~e~~irvvpHitiGL~~gki~~---e~ka-IdiL~~~~~DalVl~vliPtp-Gtkm~~~~pp~~eE~i~v~~~AR 215 (275)
T COG1856 143 L-LLKENGIRVVPHITIGLDFGKIHG---EFKA-IDILVNYEPDALVLVVLIPTP-GTKMGNSPPPPVEEAIKVVKYAR 215 (275)
T ss_pred H-HHHHcCceeceeEEEEeccCcccc---hHHH-HHHHhcCCCCeEEEEEEecCC-chhccCCCCcCHHHHHHHHHHHH
Confidence 7 5555788887776542 22322 2232 344454431 22233344432 33 345677777666666655
No 133
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.83 E-value=4.8 Score=36.52 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcC-CCCCCCCcEEEEcC---CcHH-HHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 10 ALVEAVRIMTGL-PFQVSPKRITVSTV---GIVH-AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 10 ~l~~~l~~lk~~-~i~~~~~~~~v~T~---G~~~-~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
.+.++++.+.+. ++ ..+.+++. .+.+ .++.+.+.+ . ..+.+.+.|.+++..+.+ .+.+..+++.+
T Consensus 217 ~l~~Ll~~l~~~~~~----~~ir~~~~~p~~~~~ell~~l~~~~~~~-~~l~igiqSgs~~vLk~m---~R~~~~~~~~~ 288 (444)
T PRK14325 217 DFAELLRLVAAIDGI----ERIRYTTSHPRDFTDDLIEAYADLPKLV-PFLHLPVQSGSDRILKAM---NRGHTALEYKS 288 (444)
T ss_pred hHHHHHHHHHhcCCc----cEEEEccCCcccCCHHHHHHHHcCCccc-CceeccCCcCCHHHHHhC---CCCCCHHHHHH
Confidence 466777776653 32 13555432 2223 344444432 2 267789999999998775 33467888888
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
.++.+.+ .+..+.+..-+|=|+ +++++++++.++|++.++ ..+.+.+|-|..
T Consensus 289 ~i~~lr~-~~~gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~~~~~~~sp~p 342 (444)
T PRK14325 289 IIRKLRA-ARPDIAISSDFIVGFPGETDEDFEATMKLIEDVGFDQSFSFIYSPRP 342 (444)
T ss_pred HHHHHHH-HCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCCeeeeeeccCCC
Confidence 8886544 433466777677554 688999999999999987 366777888763
No 134
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.47 E-value=6.1 Score=36.26 Aligned_cols=118 Identities=11% Similarity=0.171 Sum_probs=78.0
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEEcC---CcHH-HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 10 ALVEAVRIMTGLPFQVSPKRITVSTV---GIVH-AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 10 ~l~~~l~~lk~~~i~~~~~~~~v~T~---G~~~-~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
.+.++++.+.+. .+..++.+++. .+.+ .++.+... +. ..+.+-+-|.+++..+.+ .+.++.+++++.
T Consensus 241 ~l~~Ll~~l~~~---~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~-~~i~iglQSgsd~vLk~m---~R~~t~~~~~~~ 313 (467)
T PRK14329 241 NFAQLLEMVAEA---VPDMRIRFSTSHPKDMTDDVLEVMAKYDNIC-KHIHLPVQSGSDRILKLM---NRKYTREWYLDR 313 (467)
T ss_pred cHHHHHHHHHhc---CCCcEEEEecCCcccCCHHHHHHHHhCCCCC-CeEEeCCCcCCHHHHHhc---CCCCCHHHHHHH
Confidence 466777766543 11225666542 2223 34444443 33 378899999999998885 345667788888
Q ss_pred HHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
++.+.+ ....+.+++-+|=| -+++++++++.++|+..++ ..+.+.+|.|..
T Consensus 314 i~~ir~-~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~~~sp~p 366 (467)
T PRK14329 314 IDAIRR-IIPDCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMFKYSERP 366 (467)
T ss_pred HHHHHH-hCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCC
Confidence 775544 33445666666644 4589999999999999997 477888998874
No 135
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=93.28 E-value=1.9 Score=38.90 Aligned_cols=80 Identities=11% Similarity=0.297 Sum_probs=61.1
Q ss_pred eEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEe
Q 028700 52 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLI 129 (205)
Q Consensus 52 ~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~li 129 (205)
.+.+.+-|.+++..+.+- +.+..+++.+.++.+.+ ....+.+.+=+|=|+ +++++++++.++|+++++ ..+.+-
T Consensus 245 ~l~iglQSgsd~iL~~m~---R~~~~~~~~~~i~~i~~-~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~ 320 (420)
T TIGR01578 245 FLHLPVQSGSDSVLKEMK---REYTVSDFEDIVDKFRE-RFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPEKINIT 320 (420)
T ss_pred ceEeCCccCCHHHHHhcC---CCCCHHHHHHHHHHHHH-hCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 466778888888877753 34577888888876544 333567777777776 899999999999999987 478888
Q ss_pred ecCCCC
Q 028700 130 PFNPIG 135 (205)
Q Consensus 130 p~~~~g 135 (205)
+|.|..
T Consensus 321 ~~~p~p 326 (420)
T TIGR01578 321 KFSPRP 326 (420)
T ss_pred EeeCCC
Confidence 999874
No 136
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.27 E-value=6.4 Score=35.96 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=67.4
Q ss_pred HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHH
Q 028700 40 AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLG 116 (205)
Q Consensus 40 ~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~ 116 (205)
.++.+... +. ..+.+.+-|.+++..+.+ .+.++.+++++.++.+.+ ....+.+..-+|=| -+++++++++.+
T Consensus 257 ll~~m~~~~~gc-~~l~iglQSgsd~vLk~m---~R~~t~e~~~~~v~~ir~-~~pgi~i~~d~IvGfPgET~edf~~Tl 331 (455)
T PRK14335 257 LIATIAQESRLC-RLVHLPVQHGSNGVLKRM---NRSYTREHYLSLVGKLKA-SIPNVALSTDILIGFPGETEEDFEQTL 331 (455)
T ss_pred HHHHHHhCCCCC-CeEEEccCcCCHHHHHHc---CCCCCHHHHHHHHHHHHH-hCCCCEEEEEEEEeCCCCCHHHHHHHH
Confidence 34444442 33 367799999999998874 345788899999886655 32346677666655 368999999999
Q ss_pred HHHhcCC-ceEEEeecCCCC
Q 028700 117 KLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 117 ~~l~~~~-~~v~lip~~~~g 135 (205)
+|++.++ ..+.+.+|.|..
T Consensus 332 ~~i~~l~~~~~~~~~~sp~p 351 (455)
T PRK14335 332 DLMREVEFDSAFMYHYNPRE 351 (455)
T ss_pred HHHHhcCCCeEEEEEecCCC
Confidence 9999997 478889999984
No 137
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=93.01 E-value=7 Score=35.66 Aligned_cols=117 Identities=9% Similarity=0.162 Sum_probs=78.4
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEcC---CcHH-HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHH
Q 028700 11 LVEAVRIMTGLPFQVSPKRITVSTV---GIVH-AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 84 (205)
Q Consensus 11 l~~~l~~lk~~~i~~~~~~~~v~T~---G~~~-~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l 84 (205)
+.++++.+.+. .+..++.+++. .+.+ .++.+... +. ..+.+.+-|.+++..+.+ .+.++.+++.+.+
T Consensus 217 l~~Ll~~l~~~---~~~~rir~~~~~p~~l~~ell~~~~~~~~g~-~~l~iglQSgsd~vLk~m---~R~~t~~~~~~~v 289 (445)
T PRK14340 217 FAGLLDAVSRA---APEMRIRFTTSHPKDISESLVRTIAARPNIC-NHIHLPVQSGSSRMLRRM---NRGHTIEEYLEKI 289 (445)
T ss_pred HHHHHHHHhhc---CCCcEEEEccCChhhcCHHHHHHHHhCCCCC-CeEEECCCcCCHHHHHhc---CCCCCHHHHHHHH
Confidence 56777777543 11225666553 1223 34444333 33 367899999999998875 4456788899988
Q ss_pred HHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 85 KEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 85 ~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
+.+.+ ....+.+++-+|=| =.++++++++.++|++.++ ..+.+-+|.|..
T Consensus 290 ~~lr~-~~pgi~i~td~IvGfPgET~edf~~tl~~~~~~~~~~~~~f~~sp~p 341 (445)
T PRK14340 290 ALIRS-AIPGVTLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFMFYYSVRP 341 (445)
T ss_pred HHHHH-hCCCCEEeccEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEEecCCC
Confidence 86654 32346677666644 3478999999999999997 468888999874
No 138
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.37 E-value=6.4 Score=35.88 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhcC-CCCCCCCcEEEEcCC---cHHH-HHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 9 AALVEAVRIMTGL-PFQVSPKRITVSTVG---IVHA-INKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 9 ~~l~~~l~~lk~~-~i~~~~~~~~v~T~G---~~~~-~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
..+.++++.+.+. ++ .++.+++.- +.+. ++.+... +. ..+.+.+-|.+++..+.+ .+.++.++++
T Consensus 222 ~~l~~Ll~~i~~~~~~----~rir~~~~~p~~~~~eli~~~~~~~~~~-~~l~igiQSgsd~vLk~m---~R~~t~e~~~ 293 (448)
T PRK14333 222 HTLTDLLYYIHDVEGI----ERIRFATSHPRYFTERLIKACAELPKVC-EHFHIPFQSGDNEILKAM---ARGYTHEKYR 293 (448)
T ss_pred ccHHHHHHHHHhcCCC----eEEEECCCChhhhhHHHHHHHhcCCccc-ccccCCCccCCHHHHHhc---CCCCCHHHHH
Confidence 3577777777663 33 246654321 1122 3333332 22 256688999999999885 3456788888
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
+.++.+.+ ....+.+..-+|-| -+++++++++.++|+++++ ..+++.+|.|..
T Consensus 294 ~~i~~lr~-~~p~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~~~sp~p 348 (448)
T PRK14333 294 RIIDKIRE-YMPDASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRP 348 (448)
T ss_pred HHHHHHHH-hCCCcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeeeeeecCC
Confidence 88886655 43446666666644 4588999999999999997 468888998873
No 139
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=91.97 E-value=0.35 Score=36.54 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=26.0
Q ss_pred eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCc---------------------eEEecccccccccccccccccc
Q 028700 125 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI---------------------RTTVRKQMGQDISGACGQLVVN 183 (205)
Q Consensus 125 ~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi---------------------~~~i~~~~g~d~~~~Cgql~~~ 183 (205)
.|+||+|||+|.+..|.........++.+.+++.++. .+.+-.+..+.+|++|-.+|.+
T Consensus 2 ~vRFIElMP~g~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~pa~~y~~~g~~g~vG~I~~~s~~FC~~CNRiRlT 81 (128)
T PF06463_consen 2 DVRFIELMPIGEGNNWFEEEFVPAQEILERLEERYELLPSEKRPNGPARYYRIPGGKGRVGFISPVSNPFCSSCNRIRLT 81 (128)
T ss_dssp EEEEEE---B-TTSSB-TTTB--HHHHHHHHHHHS-EEEE--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEEE-
T ss_pred eEEEEEeeecCCCCCchhhcCcCHHHHHHHHHHhCCccccccccCCcceEEEECCCCcEEEEEeCCCCCCCCcCCEEEEc
Confidence 5899999999855545332222223333333311111 1222245567899999999988
Q ss_pred cccc
Q 028700 184 LPDK 187 (205)
Q Consensus 184 ~~~~ 187 (205)
+.-+
T Consensus 82 sdG~ 85 (128)
T PF06463_consen 82 SDGK 85 (128)
T ss_dssp TTSE
T ss_pred cCcc
Confidence 7544
No 140
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=91.79 E-value=4.3 Score=36.97 Aligned_cols=80 Identities=10% Similarity=0.191 Sum_probs=63.1
Q ss_pred eEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEe
Q 028700 52 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLI 129 (205)
Q Consensus 52 ~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~li 129 (205)
.+.+-+-|.+++..+.+ .+.+..+++.+.++.+.+. ...+.+.+-+|=|+ +.+++++++.++|+++++ ..+.+.
T Consensus 261 ~l~iglQSgsd~vLk~M---~R~~t~e~~~~~v~~lr~~-~~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~f 336 (446)
T PRK14337 261 RLHLPLQSGSDRILKAM---GRKYDMARYLDIVTDLRAA-RPDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFSF 336 (446)
T ss_pred eEEECCCCCCHHHHHhC---CCCCCHHHHHHHHHHHHHh-CCCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEEE
Confidence 67799999999998874 3456788888888866553 44577777788664 688999999999999997 467788
Q ss_pred ecCCCC
Q 028700 130 PFNPIG 135 (205)
Q Consensus 130 p~~~~g 135 (205)
+|.|..
T Consensus 337 ~ysp~p 342 (446)
T PRK14337 337 CYSDRP 342 (446)
T ss_pred ecCCCC
Confidence 898864
No 141
>PRK01254 hypothetical protein; Provisional
Probab=91.57 E-value=5.4 Score=38.38 Aligned_cols=111 Identities=9% Similarity=0.142 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcC-CCCCCCCcEEEEcCC---c----HHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 8 YAALVEAVRIMTGL-PFQVSPKRITVSTVG---I----VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 8 ~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G---~----~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
...+.++|+.+++. |+ +++-|.+.= + ...++.+.....--.|.+=+-|.+++.-+.+ +.......++
T Consensus 467 h~~l~eLLrkLr~IpGV----KkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M-~Kp~~~~~e~ 541 (707)
T PRK01254 467 HEPTINLYRRARDLKGI----KKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKM-MKPGMGSYDR 541 (707)
T ss_pred HHHHHHHHHHHHhCCCc----eEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHh-CCCCcccHHH
Confidence 35789999999873 43 344443331 1 1246666554321145577899999987754 3433356788
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~ 123 (205)
..+.++++.+..+..+.+..-+|-| -++++++++++++|+++++
T Consensus 542 F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~ 586 (707)
T PRK01254 542 FKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNR 586 (707)
T ss_pred HHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhC
Confidence 8888888877777778777777766 5688999999999999986
No 142
>PRK05926 hypothetical protein; Provisional
Probab=91.57 E-value=2.3 Score=37.92 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=79.7
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcC----------CcH--HHHHHHhhcCCCceEEE-eecCCCHHhhhhhcC
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTV----------GIV--HAINKFHSDLPGLNLAV-SLHAPVQDVRCQIMP 70 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~----------G~~--~~~~~l~~~~~~~~l~~-slk~~d~~~~~~i~~ 70 (205)
|-+.++.+.++++.+++. +|..+++-.|. |.. ..+++|.+.|++ .+.- -....+++.++.+.|
T Consensus 126 p~~~~e~~~e~i~~Ik~~---~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~-~~~g~GaEi~~e~~r~~~~p 201 (370)
T PRK05926 126 PSCNLAYYEELFSKIKQN---FPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLD-SIPGGGAEILVDEIRETLAP 201 (370)
T ss_pred CCCCHHHHHHHHHHHHHh---CCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcC-ccCCCCchhcCHHHHHhhCC
Confidence 334678899999999986 23335554442 222 358888888864 4442 356678999998886
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc----eEEEee
Q 028700 71 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV----VVNLIP 130 (205)
Q Consensus 71 ~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~----~v~lip 130 (205)
. +.+.++-++.++.+ ++.|.++.-- +|=|.-.+.|+.-+.+..++++.. -..|||
T Consensus 202 ~--~~t~~e~l~~i~~a-~~~Gi~~~sg--mi~G~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp 260 (370)
T PRK05926 202 G--RLSSQGFLEIHKTA-HSLGIPSNAT--MLCYHRETPEDIVTHMSKLRALQDKTSGFKNFIL 260 (370)
T ss_pred C--CCCHHHHHHHHHHH-HHcCCcccCc--eEEeCCCCHHHHHHHHHHHHhcCCccCCeeeeEe
Confidence 3 44667778888744 3356555444 777788899999999999998852 245555
No 143
>PRK09234 fbiC FO synthase; Reviewed
Probab=91.56 E-value=4.2 Score=40.19 Aligned_cols=144 Identities=10% Similarity=0.137 Sum_probs=90.4
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEEE----------cCCcH--HHHHHHhhcCCCceEEE-eecCCCHHhhhhhcC
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITVS----------TVGIV--HAINKFHSDLPGLNLAV-SLHAPVQDVRCQIMP 70 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v~----------T~G~~--~~~~~l~~~~~~~~l~~-slk~~d~~~~~~i~~ 70 (205)
|-+..+.+.++++.+|+.. +..++... +.|.. ..+++|.+.|++ .+.- .=-..+++.|+.++|
T Consensus 585 p~~~~~~y~~lir~IK~~~---p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLd-s~pgt~aeil~d~vr~~i~p 660 (843)
T PRK09234 585 PELPGTGYADLVRAVKARV---PSMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLD-TIPGTAAEILDDEVRWVLTK 660 (843)
T ss_pred CCcCHHHHHHHHHHHHHhC---CCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcC-ccCCCchhhCCHHHHhhcCC
Confidence 4456788999999999872 23356433 24553 468999998874 5532 233467788878876
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc----eEEEeecC--CCC-CC----CC
Q 028700 71 AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV----VVNLIPFN--PIG-SV----SQ 139 (205)
Q Consensus 71 ~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~----~v~lip~~--~~g-~~----~~ 139 (205)
. +.+.++-++.++.+ ++.| +.+..-+|=|.-++.++..+.+.+++++.. ..++||++ +.. +. ..
T Consensus 661 ~--k~~~~~wle~i~~A-h~lG--i~~~stmm~G~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~ 735 (843)
T PRK09234 661 G--KLPTAEWIEVVTTA-HEVG--LRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAA 735 (843)
T ss_pred C--CCCHHHHHHHHHHH-HHcC--CCcccceEEcCCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCC
Confidence 4 44555556767643 3355 445666777888999999999999999863 24566644 322 11 11
Q ss_pred ccCCcHHHHHHHHHHHH
Q 028700 140 FRTSSDDKVSSFQKILR 156 (205)
Q Consensus 140 ~~~~~~e~l~~~~~~l~ 156 (205)
.+.++..+..+...+++
T Consensus 736 ~~~~t~~e~Lr~iAvaR 752 (843)
T PRK09234 736 RPGPTHRENRAVHALAR 752 (843)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 24466666666555543
No 144
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.68 E-value=13 Score=33.70 Aligned_cols=116 Identities=10% Similarity=0.231 Sum_probs=76.5
Q ss_pred HHHHHHHhhcC-CCCCCCCcEEEEcC---CcHH-HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 11 LVEAVRIMTGL-PFQVSPKRITVSTV---GIVH-AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 11 l~~~l~~lk~~-~i~~~~~~~~v~T~---G~~~-~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
+.++++.+.+. |+ ..+.+++. .+.+ .++.+... +. ..+.+.+-|.+++..+.+. +.+..+.+++.
T Consensus 199 l~~Ll~~l~~~~g~----~~ir~~s~~p~~~~~ell~~~~~~~~~~-~~l~iglQSgsd~vLk~M~---R~~t~~~~~~~ 270 (420)
T PRK14339 199 FSDLLDKLSEIEGL----ERIRFTSPHPLHMDDKFLEEFAKNPKIC-KSIHMPLQSGSSEILKAMK---RGYTKEWFLNR 270 (420)
T ss_pred HHHHHHHHhcCCCc----cEEEECCCChhhcCHHHHHHHHcCCCcc-CceEeCCccCCHHHHHhcc---CCCCHHHHHHH
Confidence 66777776552 33 23555432 1223 34444443 22 2677999999999988764 45678888888
Q ss_pred HHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
++.+.+ ....+.+.+-+|=| -+++++++++.++|++.++. .+.+.+|.|..
T Consensus 271 v~~lr~-~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f~~sp~p 323 (420)
T PRK14339 271 AEKLRA-LVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSFKYSPRP 323 (420)
T ss_pred HHHHHH-HCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeEecCCCC
Confidence 876655 33345565556644 45789999999999999874 57788999874
No 145
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.51 E-value=13 Score=33.64 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=59.8
Q ss_pred eEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEe
Q 028700 52 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLI 129 (205)
Q Consensus 52 ~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~li 129 (205)
.+.+.+-|.+++..+.+ .+.+..+++.+.++.+.+. ...+.+..=+|=| -+++++++++.++|++.++ ..+++-
T Consensus 252 ~l~iglQSgsd~vLk~M---~R~~~~~~~~~~i~~lr~~-~~~i~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~~~~ 327 (434)
T PRK14330 252 SIHLPVQSGSNRILKLM---NRRYTREEYLELIEKIRSK-VPDASISSDIIVGFPTETEEDFMETVDLVEKAQFERLNLA 327 (434)
T ss_pred ceecCcCCCCHHHHHhc---CCCCCHHHHHHHHHHHHHh-CCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeee
Confidence 57788999999998865 3356788888888765553 3335555555544 4588999999999999998 478888
Q ss_pred ecCCCC
Q 028700 130 PFNPIG 135 (205)
Q Consensus 130 p~~~~g 135 (205)
+|.|..
T Consensus 328 ~~sp~p 333 (434)
T PRK14330 328 IYSPRE 333 (434)
T ss_pred eccCCC
Confidence 999874
No 146
>PRK00955 hypothetical protein; Provisional
Probab=90.17 E-value=5.5 Score=37.98 Aligned_cols=122 Identities=11% Similarity=0.113 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhcC-CCCCCCCcEEEEcC---Cc--H----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 8 YAALVEAVRIMTGL-PFQVSPKRITVSTV---GI--V----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 8 ~~~l~~~l~~lk~~-~i~~~~~~~~v~T~---G~--~----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
...+.++++++++. |+ +++.+++. .+ . ..++++......-.|.+.+-|.+++..+.+-.. ....+
T Consensus 386 ~~~l~~LLr~l~~l~gv----krv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~-~~~~~ 460 (620)
T PRK00955 386 HKEYLELLRKVRKLPGV----KKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKP-SREVY 460 (620)
T ss_pred hHHHHHHHHHHhccCCc----eEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCC-CHHHH
Confidence 35688999999874 33 35555443 11 1 146777765321257799999999998776432 11123
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCCc-eEEEeecCCC
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 134 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~~-~v~lip~~~~ 134 (205)
+++++.++++.+..|....+..=+|=| =.+++++++++++|+++++. .+.+-+|-|.
T Consensus 461 ~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~ 519 (620)
T PRK00955 461 DKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPT 519 (620)
T ss_pred HHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecC
Confidence 445555555665555543444333423 45789999999999999873 5566677775
No 147
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=87.68 E-value=21 Score=32.24 Aligned_cols=117 Identities=14% Similarity=0.231 Sum_probs=76.9
Q ss_pred HHHHHHHHhhcC-CCCCCCCcEEEEcCC---cHH-HHHHHhhc--CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 10 ALVEAVRIMTGL-PFQVSPKRITVSTVG---IVH-AINKFHSD--LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 10 ~l~~~l~~lk~~-~i~~~~~~~~v~T~G---~~~-~~~~l~~~--~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
.+.++++.+++. ++ .++.+++.- +.+ .++.+... +. ..+.+.+-+.+++..+.+- +.++.+++.+
T Consensus 192 ~l~~Ll~~l~~~~~~----~~ir~~~~~p~~i~~ell~~l~~~~~~~-~~l~lglQSgsd~vLk~M~---R~~~~~~~~~ 263 (418)
T PRK14336 192 CLADLLSALHDIPGL----LRIRFLTSHPKDISQKLIDAMAHLPKVC-RSLSLPVQAGDDTILAAMR---RGYTNQQYRE 263 (418)
T ss_pred cHHHHHHHHHhcCCc----cEEEEeccChhhcCHHHHHHHHhcCccC-CceecCCCcCCHHHHHHhC---CCCCHHHHHH
Confidence 467777777653 22 256655432 112 34434332 22 2677889999999988764 3457788888
Q ss_pred HHHHHHHhcCCcEEEEEEEeCC-CCCCHHHHHHHHHHHhcCC-ceEEEeecCCCC
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDG-VNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIG 135 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpG-iNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g 135 (205)
.++.+.+ ....+.+..=+|-| -++++++.++.++|+++.+ ..+++-+|.|..
T Consensus 264 ~i~~lr~-~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v~~ysp~p 317 (418)
T PRK14336 264 LVERLKT-AMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHVAAYSPRP 317 (418)
T ss_pred HHHHHHh-hCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEeeecCCCC
Confidence 8875554 32346666666655 3588999999999999987 467888899874
No 148
>PRK05927 hypothetical protein; Provisional
Probab=85.92 E-value=12 Score=33.02 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcE----E------EEcCCcH--HHHHHHhhcCCCceEE-EeecCCCHHhhhhhcCCC
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRI----T------VSTVGIV--HAINKFHSDLPGLNLA-VSLHAPVQDVRCQIMPAA 72 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~----~------v~T~G~~--~~~~~l~~~~~~~~l~-~slk~~d~~~~~~i~~~~ 72 (205)
.-.+.+.++++.+|+. ++..++ + -.+.|.. ..+++|.+.|++ .+. --+...++..++.++|.
T Consensus 106 ~~~e~~~~~i~~ik~~---~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~-~l~g~~~Et~~~~~~~~~~p~- 180 (350)
T PRK05927 106 LGIDYLEELVRITVKE---FPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQR-TIPGGGAEILSERVRKIISPK- 180 (350)
T ss_pred CCHHHHHHHHHHHHHH---CCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcc-cCCCCCchhCCHHHhhccCCC-
Confidence 4578899999999975 121122 1 1335765 368889888863 443 25667888888888754
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC----ceEEEeecCCC--C-CC-CCcc-CC
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ----VVVNLIPFNPI--G-SV-SQFR-TS 143 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~----~~v~lip~~~~--g-~~-~~~~-~~ 143 (205)
+.+.++=++.++.+ .+.| +.+..-+|=|.-.+.++.-+.+..++++. .-.++||+.+. + +. .... ++
T Consensus 181 -k~~~~~rl~~i~~A-~~lG--i~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~ 256 (350)
T PRK05927 181 -KMGPDGWIQFHKLA-HRLG--FRSTATMMFGHVESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQA 256 (350)
T ss_pred -CCCHHHHHHHHHHH-HHcC--CCcCceeEEeeCCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCC
Confidence 44456667777643 2244 66666778888899999988888888874 23455564221 2 10 1111 46
Q ss_pred cHHHHHHHHHHHH
Q 028700 144 SDDKVSSFQKILR 156 (205)
Q Consensus 144 ~~e~l~~~~~~l~ 156 (205)
+.++..+...+++
T Consensus 257 s~~e~Lr~iAv~R 269 (350)
T PRK05927 257 SPELYYRILAVAR 269 (350)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555543
No 149
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=85.49 E-value=30 Score=31.94 Aligned_cols=117 Identities=13% Similarity=0.196 Sum_probs=77.6
Q ss_pred cEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC
Q 028700 29 RITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 105 (205)
Q Consensus 29 ~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi 105 (205)
-+++||==.. ..+++++.++. +.+-+-+-+++++..++. .+.+..+.+.++.+ +++..|-+|... +.||.
T Consensus 186 gitiETRPD~~~ee~ld~mlkyG~-TrVELGVQSiyd~Vl~~~---~RGHtvedv~~a~r-LlKd~GfKv~~H--iMpGL 258 (515)
T COG1243 186 GITIETRPDYIDEEHLDQMLKYGV-TRVELGVQSIYDDVLERT---KRGHTVEDVVEATR-LLKDAGFKVGYH--IMPGL 258 (515)
T ss_pred EEEEecCccccCHHHHHHHHhcCC-cEEEEeeeeHHHHHHHHh---cCCccHHHHHHHHH-HHHhcCcEEEEE--ecCCC
Confidence 3888886433 36999999996 578899999999999885 45568899999887 556566555555 55665
Q ss_pred C--CCHHHHHHHHHHHhcCCceEEEeecCCCC--C---------CCCccCCcHHHHHHHH
Q 028700 106 N--DEEQHAHQLGKLLETFQVVVNLIPFNPIG--S---------VSQFRTSSDDKVSSFQ 152 (205)
Q Consensus 106 N--Ds~e~i~~l~~~l~~~~~~v~lip~~~~g--~---------~~~~~~~~~e~l~~~~ 152 (205)
= |-+-+++.+.+.+..-..+-+.+-..|.= . ...|+|-+.++.-++.
T Consensus 259 Pgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli 318 (515)
T COG1243 259 PGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELI 318 (515)
T ss_pred CCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHH
Confidence 3 33557777777776543334444444421 1 1457777766655443
No 150
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.82 E-value=35 Score=31.27 Aligned_cols=117 Identities=13% Similarity=0.281 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEcCCcHH---HHHHHhhcCCC--ceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 11 LVEAVRIMTGLPFQVSPKRITVSTVGIVH---AINKFHSDLPG--LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 11 l~~~l~~lk~~~i~~~~~~~~v~T~G~~~---~~~~l~~~~~~--~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.++|+.+.+. .+..++-++|.=-.+ .+-+++...+. -.|-+.+-|.++..-+.. .+.+.-++.++.++
T Consensus 214 l~~Ll~~l~~I---~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M---~R~yt~e~~~~~i~ 287 (437)
T COG0621 214 LADLLRELSKI---PGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRM---KRGYTVEEYLEIIE 287 (437)
T ss_pred HHHHHHHHhcC---CCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHh---CCCcCHHHHHHHHH
Confidence 66777777653 223478888874333 22233322211 134477888898887774 55678888888888
Q ss_pred HHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCC-ceEEEeecCCC
Q 028700 86 EYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQ-VVVNLIPFNPI 134 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~-~~v~lip~~~~ 134 (205)
++.+ ....+.|++=+|=|| ..|+|+.++..+|+++.+ .+++..+|.|=
T Consensus 288 k~R~-~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~YSpR 337 (437)
T COG0621 288 KLRA-ARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKYSPR 337 (437)
T ss_pred HHHH-hCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeecCCC
Confidence 7765 455788888888555 378899999999999997 58999999985
No 151
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=78.39 E-value=2.2 Score=24.05 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=12.1
Q ss_pred CcEEEEcCCcHHHHHHH
Q 028700 28 KRITVSTVGIVHAINKF 44 (205)
Q Consensus 28 ~~~~v~T~G~~~~~~~l 44 (205)
-.++|||||..|.+-+.
T Consensus 5 LqI~ISTnG~sP~la~~ 21 (30)
T PF14824_consen 5 LQIAISTNGKSPRLARL 21 (30)
T ss_dssp EEEEEEESSS-HHHHHH
T ss_pred eEEEEECCCCChHHHHH
Confidence 37999999998865443
No 152
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=73.69 E-value=43 Score=28.01 Aligned_cols=96 Identities=16% Similarity=0.271 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 5 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 5 llq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
+.+.+.+...++.+++.|+ +++++==|.. ..+..+....+| .+.+| ...-+.+.... .-..+++.
T Consensus 132 ~~~~~~~~~~l~~L~~~G~-----~ialDDFGtG~ssl~~L~~l~~d-~iKID-----~~fi~~i~~~~---~~~~iv~~ 197 (256)
T COG2200 132 IDDLDTALALLRQLRELGV-----RIALDDFGTGYSSLSYLKRLPPD-ILKID-----RSFVRDLETDA---RDQAIVRA 197 (256)
T ss_pred hcCHHHHHHHHHHHHHCCC-----eEEEECCCCCHHHHHHHhhCCCC-eEEEC-----HHHHhhcccCc---chHHHHHH
Confidence 3466778899999999888 8999998875 345555554433 45555 22222222111 12246677
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
+-..++..+..|+.+ |+ .+++++ +++.++++
T Consensus 198 iv~la~~l~~~vvaE-----GV-Et~~ql----~~L~~~G~ 228 (256)
T COG2200 198 IVALAHKLGLTVVAE-----GV-ETEEQL----DLLRELGC 228 (256)
T ss_pred HHHHHHHCCCEEEEe-----ec-CCHHHH----HHHHHcCC
Confidence 766777677776655 44 455544 45566664
No 153
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=72.97 E-value=54 Score=27.35 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhc
Q 028700 12 VEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS 91 (205)
Q Consensus 12 ~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~ 91 (205)
.+.++.+.+.+. ..++..-.......++...+.+.+ .+.+.+...+....+++ +.+....++++.+.++ +++..
T Consensus 49 ~e~~~~l~~~~~---~~~~~~~~r~~~~~v~~a~~~g~~-~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~-~a~~~ 122 (259)
T cd07939 49 REAIRAIVALGL---PARLIVWCRAVKEDIEAALRCGVT-AVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVG-RAKDR 122 (259)
T ss_pred HHHHHHHHhcCC---CCEEEEeccCCHHHHHHHHhCCcC-EEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHH-HHHHC
Confidence 355566655322 113333332334567777777654 56676654444433343 3443444556666666 44557
Q ss_pred CCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCc
Q 028700 92 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 161 (205)
Q Consensus 92 ~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi 161 (205)
|..|.+.++-.... +++.+.++++.+.+.++. -|-+-.. +....++++.++...+++.+++
T Consensus 123 G~~v~~~~~~~~~~--~~~~~~~~~~~~~~~G~~--~i~l~DT-----~G~~~P~~v~~lv~~l~~~~~~ 183 (259)
T cd07939 123 GLFVSVGAEDASRA--DPDFLIEFAEVAQEAGAD--RLRFADT-----VGILDPFTTYELIRRLRAATDL 183 (259)
T ss_pred CCeEEEeeccCCCC--CHHHHHHHHHHHHHCCCC--EEEeCCC-----CCCCCHHHHHHHHHHHHHhcCC
Confidence 87888777654443 467888888888777642 2333332 2334567777777666533443
No 154
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=72.95 E-value=42 Score=28.44 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=34.6
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHH-HHHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSF-QKILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~-~~~l~~~~Gi~~~i 165 (205)
++|+|.|+.+ +-++.-++++.+++.++ .+-++| |+ |.+++++++.++ +.+.. ..++++.+
T Consensus 67 ~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~-----y~~~~~~~i~~~~~~i~~-~~~~pi~l 129 (285)
T TIGR00674 67 RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT--PY-----YNKPTQEGLYQHFKAIAE-EVDLPIIL 129 (285)
T ss_pred CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC--Cc-----CCCCCHHHHHHHHHHHHh-cCCCCEEE
Confidence 5677788875 56677778888888774 343332 21 233455555544 44444 45666654
No 155
>PRK09234 fbiC FO synthase; Reviewed
Probab=71.62 E-value=1.1e+02 Score=30.44 Aligned_cols=147 Identities=10% Similarity=0.047 Sum_probs=86.6
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH---------------------H----HHHHhhcCCCceEEEeec
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH---------------------A----INKFHSDLPGLNLAVSLH 58 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~---------------------~----~~~l~~~~~~~~l~~slk 58 (205)
+++.++.+++.++...+.|. .-++=|+|..| + ++.+.+... ....++++
T Consensus 100 ~~ls~eEIl~~a~~~~~~G~-----~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~g-l~p~i~~G 173 (843)
T PRK09234 100 AYLSPDEVLDIARAGAAAGC-----KEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETG-LLPHLNPG 173 (843)
T ss_pred ccCCHHHHHHHHHHHHHCCC-----CEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcC-CCceeeeC
Confidence 45678888888888887766 34566666432 2 222322211 13347778
Q ss_pred CCCHHhhhhhcCCC--CCCCHHHHHHHH-HH---------------HH----HhcCCcEEEEEEEeCCCCCCHHHHHHHH
Q 028700 59 APVQDVRCQIMPAA--RAFPLEKLMNAL-KE---------------YQ----KNSQQKIFIEYIMLDGVNDEEQHAHQLG 116 (205)
Q Consensus 59 ~~d~~~~~~i~~~~--~~~~~~~i~~~l-~~---------------~~----~~~~~~V~ir~~lIpGiNDs~e~i~~l~ 116 (205)
.++++..+++-... ....++.+.+.+ .+ .+ ..+...+.+..-++=|+-++.++.-+.+
T Consensus 174 ~ls~~E~~~Lk~~g~s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~GiGEt~edRve~L 253 (843)
T PRK09234 174 VMSWSELARLKPVAPSMGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIGETLAERAESL 253 (843)
T ss_pred CCCHHHHHHHHHhcCcCCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEECCCCHHHHHHHH
Confidence 88888777764432 234555543333 10 01 0122345577778889999999998888
Q ss_pred HHHhcCC-----c-eEEEeecCCCC--CCCCccCCcHHHHHHHHHHHH
Q 028700 117 KLLETFQ-----V-VVNLIPFNPIG--SVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 117 ~~l~~~~-----~-~v~lip~~~~g--~~~~~~~~~~e~l~~~~~~l~ 156 (205)
..++.+. . .+=+.+|+|.. +....++++.+++.+...+++
T Consensus 254 ~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaR 301 (843)
T PRK09234 254 FAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVAR 301 (843)
T ss_pred HHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 8888773 1 34455677652 112345677777777666654
No 156
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=70.88 E-value=77 Score=28.22 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
|-|.++.+ -.+.++.+.+.+.. ..++.-+-.....++...+.+.+ .+.+.+...+...+.++ +.+....++++.
T Consensus 46 G~p~~~~~-~~e~i~~i~~~~~~---~~i~~~~r~~~~di~~a~~~g~~-~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~ 119 (378)
T PRK11858 46 GFPAVSED-EKEAIKAIAKLGLN---ASILALNRAVKSDIDASIDCGVD-AVHIFIATSDIHIKHKL-KKTREEVLERMV 119 (378)
T ss_pred eCCCcChH-HHHHHHHHHhcCCC---eEEEEEcccCHHHHHHHHhCCcC-EEEEEEcCCHHHHHHHh-CCCHHHHHHHHH
Confidence 44666533 34566666655431 12333322233468888887764 67777766665555554 344444556666
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCC
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 160 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~G 160 (205)
+.++ +++..|..|.+.++ .+.-.+.+.+.++++.+.+.++ .|.+ -.. .....+.++.++.+.+.+..+
T Consensus 120 ~~v~-~a~~~G~~v~~~~e--d~~r~~~~~l~~~~~~~~~~Ga~~I~l---~DT-----~G~~~P~~v~~lv~~l~~~~~ 188 (378)
T PRK11858 120 EAVE-YAKDHGLYVSFSAE--DASRTDLDFLIEFAKAAEEAGADRVRF---CDT-----VGILDPFTMYELVKELVEAVD 188 (378)
T ss_pred HHHH-HHHHCCCeEEEEec--cCCCCCHHHHHHHHHHHHhCCCCEEEE---ecc-----CCCCCHHHHHHHHHHHHHhcC
Confidence 6666 44556777776644 3333456788888888887774 3332 221 123456677766666552333
Q ss_pred c--eEEeccccc
Q 028700 161 I--RTTVRKQMG 170 (205)
Q Consensus 161 i--~~~i~~~~g 170 (205)
+ .++..+..|
T Consensus 189 ~~l~~H~Hnd~G 200 (378)
T PRK11858 189 IPIEVHCHNDFG 200 (378)
T ss_pred CeEEEEecCCcC
Confidence 3 334444333
No 157
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=70.31 E-value=85 Score=28.46 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=85.9
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCc---HHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGI---VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~---~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|.|. ++++.+..++..+++. +...+..-++++.|=- ..+++.+...|.. ++.+-+-+.|++..+.+-+. .+
T Consensus 96 GTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~---h~ 171 (416)
T COG0635 96 GTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVN-RISLGVQSFNDEVLKALGRI---HD 171 (416)
T ss_pred CccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCC-EEEeccccCCHHHHHHhcCC---CC
Confidence 6777 4788888888888765 2111225799998743 1478888888874 88888999999999997544 45
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeec
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPF 131 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~ 131 (205)
.+.+.+.++.+.+ .+ --.|++=||=|. +.|.+++.+-++.+..++. +|-+-.|
T Consensus 172 ~~~~~~a~~~~~~-~g-~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L 226 (416)
T COG0635 172 EEEAKEAVELARK-AG-FTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSL 226 (416)
T ss_pred HHHHHHHHHHHHH-cC-CCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeee
Confidence 6777777775544 22 345566677554 3677888888888888863 5544444
No 158
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=70.06 E-value=59 Score=27.76 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=15.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
+|+|-|+..+-++..++++++.+.++
T Consensus 75 ~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 75 VPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred CcEEEecCccHHHHHHHHHHHHHhCC
Confidence 44555555455566667777777764
No 159
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=69.64 E-value=46 Score=27.57 Aligned_cols=104 Identities=10% Similarity=0.095 Sum_probs=60.5
Q ss_pred ecCCCHHhhhhhcCCCCCCCHH-----HHHHHHHHHHHhcCC--cEEEEEEEe-------CCCCCCHHHHHHHHHHHhcC
Q 028700 57 LHAPVQDVRCQIMPAARAFPLE-----KLMNALKEYQKNSQQ--KIFIEYIML-------DGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 57 lk~~d~~~~~~i~~~~~~~~~~-----~i~~~l~~~~~~~~~--~V~ir~~lI-------pGiNDs~e~i~~l~~~l~~~ 122 (205)
|-++-..+.+++..+.|-+..+ .+.+-+.......+. ++.+-+-+= -|++- .++-+|++|++..
T Consensus 81 IG~lQsnK~kkl~svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSGEd~K~Giep--se~~~l~~~i~~~ 158 (244)
T KOG3157|consen 81 IGHLQSNKCKKLLSVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSGEDSKSGIEP--SEAPELAEHIKSE 158 (244)
T ss_pred echhhhcccchhccCCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCCccccCCCCh--hhhHHHHHHHHHh
Confidence 3345555555555544433332 122223322233444 555543321 46653 3788999999875
Q ss_pred CceEEEeecCCCCCCC-C---ccCCcHHHHHHHHHHHHhcCCce
Q 028700 123 QVVVNLIPFNPIGSVS-Q---FRTSSDDKVSSFQKILRGSYNIR 162 (205)
Q Consensus 123 ~~~v~lip~~~~g~~~-~---~~~~~~e~l~~~~~~l~~~~Gi~ 162 (205)
=.+++|.-+|.+|... . -+.|+...+-++++.+.+++|+.
T Consensus 159 c~nL~f~GlMTIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~~ 202 (244)
T KOG3157|consen 159 CKNLKFSGLMTIGSFDNSHSSGENPDFQVLVKLRESICKKLGIP 202 (244)
T ss_pred CCcceeeeeEEeccccccccCCCCccHHHHHHHHHHHHHHhCCC
Confidence 3368888999998321 1 14577888888888765478887
No 160
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=68.57 E-value=32 Score=28.73 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCC-cEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHh
Q 028700 80 LMNALKEYQKNSQQ-KIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRG 157 (205)
Q Consensus 80 i~~~l~~~~~~~~~-~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~ 157 (205)
...-++..+...+- +|.+- -+.|+=+ +..++++++..+. .|.|+|++=+.....-..+....-..++++|+
T Consensus 154 ~YacLd~~~~~~~f~~v~v~--~ve~yP~----~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~- 226 (265)
T COG4822 154 AYACLDHVLDEYGFDNVFVA--AVEGYPL----VDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILE- 226 (265)
T ss_pred HHHHHHHHHHhcCCCceEEE--EecCCCc----HHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccchHHHHHHHH-
Confidence 33444444444442 44443 4566543 5678889998874 79999999875222112222222256788999
Q ss_pred cCCceEEe
Q 028700 158 SYNIRTTV 165 (205)
Q Consensus 158 ~~Gi~~~i 165 (205)
+.|+.++.
T Consensus 227 ~~G~~v~~ 234 (265)
T COG4822 227 KNGFKVEV 234 (265)
T ss_pred hCCceeEE
Confidence 79998764
No 161
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=67.27 E-value=76 Score=27.22 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=36.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHH-HHHHhcCCceEEeccccc
Q 028700 98 EYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 98 r~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~-~~l~~~~Gi~~~i~~~~g 170 (205)
++|+|.|+..+-++.-++++++++.++ .+-++| |+ |..++++.+.++. .+.. ..++++.+=+..|
T Consensus 76 ~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~p--P~-----y~~~~~~~i~~~f~~va~-~~~lpi~lYn~~g 142 (303)
T PRK03620 76 RVPVIAGAGGGTAQAIEYAQAAERAGADGILLLP--PY-----LTEAPQEGLAAHVEAVCK-STDLGVIVYNRDN 142 (303)
T ss_pred CCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECC--CC-----CCCCCHHHHHHHHHHHHH-hCCCCEEEEcCCC
Confidence 356666776666777778888888774 342321 22 2334555555544 4444 4566665544334
No 162
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=66.75 E-value=65 Score=27.42 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=32.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHHHHHhcCCceEEeccccc
Q 028700 98 EYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 98 r~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~Gi~~~i~~~~g 170 (205)
|+|+|-|+..+-++..++++.+++.++ .+-++ .|+ |..++++.+.+ |+.+.. ..++++.+=+..|
T Consensus 69 ~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~--pP~-----y~~~~~~~i~~~f~~v~~-~~~~pi~lYn~~g 135 (289)
T cd00951 69 RVPVLAGAGYGTATAIAYAQAAEKAGADGILLL--PPY-----LTEAPQEGLYAHVEAVCK-STDLGVIVYNRAN 135 (289)
T ss_pred CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEEC--CCC-----CCCCCHHHHHHHHHHHHh-cCCCCEEEEeCCC
Confidence 345555555555566667777777764 23221 121 22344554444 334444 4556555544334
No 163
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=66.08 E-value=84 Score=26.84 Aligned_cols=118 Identities=12% Similarity=0.281 Sum_probs=70.0
Q ss_pred HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEE-E-EeCCCCCCHHHHHHH
Q 028700 39 HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQ-QKIFIEY-I-MLDGVNDEEQHAHQL 115 (205)
Q Consensus 39 ~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~-~~V~ir~-~-lIpGiNDs~e~i~~l 115 (205)
+.+.+|.+.+-...+.++|.....+.= .+-.+.+++++.++++.+..| .+|.-|| | ++.+--+-+.|++.+
T Consensus 63 ~~L~~l~~~gy~~yfq~Tit~Y~~~lE------p~vP~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F 136 (266)
T PF08902_consen 63 PYLDELDERGYPYYFQFTITGYGKDLE------PNVPPKDERIETFRELSERIGPERVIWRYDPIILTDKYTVDYHLEAF 136 (266)
T ss_pred hhHHHHHhCCCceEEEEEeCCCCcccc------CCCCCHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCCCHHHHHHHH
Confidence 356666654323456688888876631 123357889999988887765 4788888 3 334444445677666
Q ss_pred HHHHhcCC-----ceEEEee-cCCCC---CC--CCccCCcHHHHHHHHHHH----HhcCCceE
Q 028700 116 GKLLETFQ-----VVVNLIP-FNPIG---SV--SQFRTSSDDKVSSFQKIL----RGSYNIRT 163 (205)
Q Consensus 116 ~~~l~~~~-----~~v~lip-~~~~g---~~--~~~~~~~~e~l~~~~~~l----~~~~Gi~~ 163 (205)
..+++.+. +-+-++. |..+- .. ..+.+|+.+++.++.+.| + ++|+.+
T Consensus 137 ~~la~~L~g~t~~~viSF~D~Y~k~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ia~-~~g~~l 198 (266)
T PF08902_consen 137 ERLAEALAGYTDRCVISFLDLYRKVRRNLARLGFRIREPSEEEKRELAKRLAEIAK-KYGMTL 198 (266)
T ss_pred HHHHHHHhccCCEEEEEeeeccHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH-HcCCEE
Confidence 66666552 3344542 32221 01 124578888877765544 5 678765
No 164
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=65.59 E-value=71 Score=27.20 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=16.6
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
|+|+|.|+.. +-++..++++++++.++
T Consensus 73 ~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 73 KVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 3566667753 34556667777777764
No 165
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=65.32 E-value=93 Score=27.06 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEc-----CCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCC--CCCHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVST-----VGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAAR--AFPLEKLM 81 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T-----~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~--~~~~~~i~ 81 (205)
+.+.+-++.+|++.= ++-|++ .|....++.++..+ +|+-+.|-|+-.+++|..+ +....+-+
T Consensus 175 ~HiAkTVq~iK~k~p-----~ilvE~L~pDF~Gd~~~Ve~va~SG------LDV~AHNvETVe~Ltp~VRD~RA~yrQSL 243 (360)
T KOG2672|consen 175 NHIAKTVQKIKEKAP-----EILVECLTPDFRGDLKAVEKVAKSG------LDVYAHNVETVEELTPFVRDPRANYRQSL 243 (360)
T ss_pred HHHHHHHHHHHhhCc-----ccchhhcCccccCchHHHHHHHhcC------ccceecchhhHHhcchhhcCcccchHHhH
Confidence 456666777766522 344433 33334566666555 4556778888888887533 33566666
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCC----CCccCCcHHHHHHHHHHHH
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSV----SQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~----~~~~~~~~e~l~~~~~~l~ 156 (205)
..++ .++.....++-..-++-|.-.++|++.+..+-+...++ -+-+=+|++.-.. ..|. .++..+..+++-+
T Consensus 244 ~VLk-~aK~~~P~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym~ptkrhl~v~eyv--tpekf~~w~~~~~ 320 (360)
T KOG2672|consen 244 SVLK-HAKEVKPGLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYMQPTKRHLKVKEYV--TPEKFDYWKEYGE 320 (360)
T ss_pred HHHH-HHHhhCCCceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccccCCccccceeEEee--CHHHHHHHHHHhh
Confidence 6676 44445556777777788888899999998888887764 3455566664211 1233 3466666777766
Q ss_pred hcCCceEEecc
Q 028700 157 GSYNIRTTVRK 167 (205)
Q Consensus 157 ~~~Gi~~~i~~ 167 (205)
..|+.+.-.+
T Consensus 321 -~lgf~y~Asg 330 (360)
T KOG2672|consen 321 -ELGFLYVASG 330 (360)
T ss_pred -hcceEEeccC
Confidence 6888765433
No 166
>PRK07328 histidinol-phosphatase; Provisional
Probab=65.07 E-value=83 Score=26.38 Aligned_cols=146 Identities=10% Similarity=0.072 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhcC--CCCCCCCcEEEEcC---CcHHHHHHHhhcC-CCceEEEeecCCCH------HhhhhhcCCCCCC
Q 028700 8 YAALVEAVRIMTGL--PFQVSPKRITVSTV---GIVHAINKFHSDL-PGLNLAVSLHAPVQ------DVRCQIMPAARAF 75 (205)
Q Consensus 8 ~~~l~~~l~~lk~~--~i~~~~~~~~v~T~---G~~~~~~~l~~~~-~~~~l~~slk~~d~------~~~~~i~~~~~~~ 75 (205)
++.-++.++.++++ ++. ..+-+|.. |....+++++... .| .+..|+|.++. +....+.+.....
T Consensus 62 ~~~y~~~i~~l~~~y~~i~---Il~GiE~~~~~~~~~~~~~~l~~~~~D-~vigSvH~~~~~~~~~~~~~~~~~~~~~~~ 137 (269)
T PRK07328 62 LPFYVSEVERLRARFPDLY---VRLGIEADYHPGTEEFLERLLEAYPFD-YVIGSVHYLGAWGFDNPDFVAEYEERDLDE 137 (269)
T ss_pred HHHHHHHHHHHHHHcCCCe---EEEEEEecccCCcHHHHHHHHHhCCCC-eEEEEEeecCCcCCCChhHHHHHhcCCHHH
Confidence 45556667777765 232 24566765 3334566666542 33 67799998752 2222222211111
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCC-----CCHHHHHHHHHHHhcCCceEEEeecCCCCCCCC---ccCCcHHH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVN-----DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQ---FRTSSDDK 147 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-----Ds~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~---~~~~~~e~ 147 (205)
..+...+.+.+.++.....|.=..=++.=+| +..+.++++++.+++.+.-+|+ |.-| ..+ -.-|+.
T Consensus 138 ~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g~~lEi---Nt~~-~r~~~~~~yp~~-- 211 (269)
T PRK07328 138 LYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAGLALEV---NTAG-LRKPVGEIYPSP-- 211 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcCCEEEE---Echh-hcCCCCCCCCCH--
Confidence 1222333444444432223332222332122 1345668889999888754433 4432 111 112332
Q ss_pred HHHHHHHHHhcCCceEEec
Q 028700 148 VSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 148 l~~~~~~l~~~~Gi~~~i~ 166 (205)
.+.+.+. ++|+.++++
T Consensus 212 --~il~~~~-~~g~~itig 227 (269)
T PRK07328 212 --ALLRACR-ERGIPVVLG 227 (269)
T ss_pred --HHHHHHH-HcCCCEEEe
Confidence 3345555 467776654
No 167
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=64.13 E-value=71 Score=25.33 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCc----HHHHHHHhhcCCCceEEEeecCCCHHhh--hhh--cCC-----C
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGI----VHAINKFHSDLPGLNLAVSLHAPVQDVR--CQI--MPA-----A 72 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~----~~~~~~l~~~~~~~~l~~slk~~d~~~~--~~i--~~~-----~ 72 (205)
.+++...++++.+ +.|+. -+-+.|..+ .+.++.+.+...+..+.+|+|.+|+... ++. .|. +
T Consensus 9 ~~~~~a~~~~~~l-~~~v~----~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVD----IIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVL 83 (206)
T ss_pred CCHHHHHHHHHHc-ccCee----EEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence 3567788888888 55552 244433333 2356777665323467789998887633 222 221 1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHH
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 152 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~ 152 (205)
.......+.+.++ ++++.|.++.+.+ .+..+..+++.... +.+. +++-++|--.+..+.+...+.+++++
T Consensus 84 ~~~~~~~~~~~i~-~~~~~g~~~~~~~---~~~~t~~~~~~~~~----~~g~--d~v~~~pg~~~~~~~~~~~~~i~~l~ 153 (206)
T TIGR03128 84 GVADDATIKGAVK-AAKKHGKEVQVDL---INVKDKVKRAKELK----ELGA--DYIGVHTGLDEQAKGQNPFEDLQTIL 153 (206)
T ss_pred ccCCHHHHHHHHH-HHHHcCCEEEEEe---cCCCChHHHHHHHH----HcCC--CEEEEcCCcCcccCCCCCHHHHHHHH
Confidence 1112223344444 3444676665531 22333334444432 2332 23333442123455556666777777
Q ss_pred HHHH
Q 028700 153 KILR 156 (205)
Q Consensus 153 ~~l~ 156 (205)
+.+.
T Consensus 154 ~~~~ 157 (206)
T TIGR03128 154 KLVK 157 (206)
T ss_pred HhcC
Confidence 6654
No 168
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=63.65 E-value=40 Score=28.49 Aligned_cols=57 Identities=5% Similarity=-0.023 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH------HHHHHHhhcCCCceEEEeecCCCHHhhhhhc
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIV------HAINKFHSDLPGLNLAVSLHAPVQDVRCQIM 69 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~------~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~ 69 (205)
++.+.+..+.+.+.|-.+ ..+..+|.+-- +.++.+.+.. .+-+||++.+++..+.-.
T Consensus 24 ~~~i~~~A~~~~~~GAdi--IDVg~~~~~~eE~~r~~~~v~~l~~~~---~~plsIDT~~~~v~eaaL 86 (261)
T PRK07535 24 AAFIQKLALKQAEAGADY--LDVNAGTAVEEEPETMEWLVETVQEVV---DVPLCIDSPNPAAIEAGL 86 (261)
T ss_pred HHHHHHHHHHHHHCCCCE--EEECCCCCchhHHHHHHHHHHHHHHhC---CCCEEEeCCCHHHHHHHH
Confidence 566677666666665422 23444444322 1233333321 355899999988766543
No 169
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=61.80 E-value=43 Score=29.16 Aligned_cols=31 Identities=10% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 028700 88 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 121 (205)
Q Consensus 88 ~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~ 121 (205)
..+.|.+ ++..+|-+||++.-++.|++.+.+
T Consensus 289 ~~~~G~~---~~~~vp~lN~~p~fi~~l~~~v~~ 319 (322)
T TIGR00109 289 AEDAGGD---KYQRCPALNAKPEFIEAMATLVKK 319 (322)
T ss_pred HHHcCCC---eEEECCCCCCCHHHHHHHHHHHHH
Confidence 3345654 467899999999999999998875
No 170
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=60.85 E-value=31 Score=33.09 Aligned_cols=86 Identities=7% Similarity=0.071 Sum_probs=59.9
Q ss_pred EEeCCCCC-----CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc--------cC----CcHHHHHHHHHHHHhcCCc
Q 028700 100 IMLDGVND-----EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF--------RT----SSDDKVSSFQKILRGSYNI 161 (205)
Q Consensus 100 ~lIpGiND-----s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~--------~~----~~~e~l~~~~~~l~~~~Gi 161 (205)
+-|.-+.. ..|-+.+++.+++.++. .|+|+|...+.....| .+ =+++.+.+|.+.+= ++||
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH-~~GI 228 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAH-QAGI 228 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHH-HcCC
Confidence 33555544 57788999999999995 8999999987522222 11 24799999999987 7999
Q ss_pred eEEe---cccccccccccccccccccccc
Q 028700 162 RTTV---RKQMGQDISGACGQLVVNLPDK 187 (205)
Q Consensus 162 ~~~i---~~~~g~d~~~~Cgql~~~~~~~ 187 (205)
.|.+ -+..+. ..-+|.++-.+.--+
T Consensus 229 gViLD~V~~HF~~-d~~~L~~fdg~~~~e 256 (628)
T COG0296 229 GVILDWVPNHFPP-DGNYLARFDGTFLYE 256 (628)
T ss_pred EEEEEecCCcCCC-CcchhhhcCCccccc
Confidence 8865 344554 346777777555544
No 171
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=60.38 E-value=28 Score=29.60 Aligned_cols=75 Identities=5% Similarity=0.066 Sum_probs=51.9
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCc------HHHHHHHHHHHHhcCCceEEeccc
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS------DDKVSSFQKILRGSYNIRTTVRKQ 168 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~------~e~l~~~~~~l~~~~Gi~~~i~~~ 168 (205)
|++-.|.+| +.+++.-..+++.++++-++++.+.+++...+.+++ ..-.+.+.+... +.|+++.+.|.
T Consensus 48 vTv~sP~~p-----~~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~-~~Gyd~V~dGt 121 (269)
T COG1606 48 VTVDSPYIP-----RREIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAE-KRGYDVVADGT 121 (269)
T ss_pred EEEecCCCC-----hhhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHH-HcCCCEEEeCC
Confidence 445555554 446777777888888777789998886333444333 345555677777 68999999988
Q ss_pred ccccccc
Q 028700 169 MGQDISG 175 (205)
Q Consensus 169 ~g~d~~~ 175 (205)
.+.|+.+
T Consensus 122 NasDl~~ 128 (269)
T COG1606 122 NASDLFD 128 (269)
T ss_pred cHHHhcC
Confidence 8888776
No 172
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=59.56 E-value=12 Score=31.78 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=51.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhcC-CcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCC---CCccCC
Q 028700 69 MPAARAFPLEKLMNALKEYQKNSQ-QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSV---SQFRTS 143 (205)
Q Consensus 69 ~~~~~~~~~~~i~~~l~~~~~~~~-~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~---~~~~~~ 143 (205)
+|..+...-......++..++..+ ..+.+-+ +.|+-+ ++.+++.++..+ .+|.|+||+-+... .+....
T Consensus 147 mGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgt--vEG~P~----~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDmaGd 220 (262)
T PF06180_consen 147 MGHGTPHPANAAYSALQAMLKKHGYPNVFVGT--VEGYPS----LEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDMAGD 220 (262)
T ss_dssp EE---SCHHHHHHHHHHHHHHCCT-TTEEEEE--TTSSSB----HHHHHHHHHHHT-SEEEEEEESSS--HHHHCCCCSS
T ss_pred EeCCCCCCccHHHHHHHHHHHhCCCCeEEEEE--eCCCCC----HHHHHHHHHhcCCCeEEEEecccccchhhhhhhcCC
Confidence 333334333446677887777665 5577664 577644 566777777666 47999999998521 223222
Q ss_pred cHHHHHHHHHHHHhcCCceEEe
Q 028700 144 SDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 144 ~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
++ +.++..|+ +.|+.|.+
T Consensus 221 e~---dSWks~L~-~~G~~v~~ 238 (262)
T PF06180_consen 221 EE---DSWKSRLE-AAGFEVTC 238 (262)
T ss_dssp ST---TSHHHHHH-HTT-EEEE
T ss_pred Cc---chHHHHHH-HCCCEEEE
Confidence 22 34677888 79998865
No 173
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=59.43 E-value=63 Score=23.18 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCC-ceEEEeecCCCCCCCCc-c-CCcHHHHHHHHHHHHhcCCceEEec
Q 028700 111 HAHQLGKLLETFQ-VVVNLIPFNPIGSVSQF-R-TSSDDKVSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 111 ~i~~l~~~l~~~~-~~v~lip~~~~g~~~~~-~-~~~~e~l~~~~~~l~~~~Gi~~~i~ 166 (205)
.+++.++.+...+ .+|-++|+.-+. +.-. . -|.+ +-+.++..|+ +.|+.+...
T Consensus 43 ~i~~~l~~l~~~G~~~i~lvPl~L~~-G~H~~~Dipge-~~~SW~~~l~-~~g~~v~~~ 98 (103)
T cd03413 43 GLDDVLAKLKKAGIKKVTLMPLMLVA-GDHAHNDMAGD-EPDSWKSILE-AAGIKVETV 98 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEehhhee-cccchhcCCCC-CchhHHHHHH-HCCCeeEEE
Confidence 4666666666555 479999999875 3222 1 2332 3457888999 789988653
No 174
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=58.46 E-value=50 Score=31.51 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=38.0
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
|+-|....+++.+.++.+.+.|. ..+++ +|.|.. | . ++.+.+.. .+-+.+|+.|
T Consensus 146 t~sp~~t~e~~~~~ak~l~~~Ga----d~I~IkDtaG~l~P~~v~~lv~alk~~~---~ipi~~H~Hn 206 (596)
T PRK14042 146 TTSPVHTLDNFLELGKKLAEMGC----DSIAIKDMAGLLTPTVTVELYAGLKQAT---GLPVHLHSHS 206 (596)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCC----CEEEeCCcccCCCHHHHHHHHHHHHhhc---CCEEEEEeCC
Confidence 57788899999999999988765 36888 999986 4 2 44444432 2446666654
No 175
>smart00642 Aamy Alpha-amylase domain.
Probab=57.56 E-value=62 Score=25.25 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCc-eEEEeecCCCCC----CC-----CccC-----CcHHHHHHHHHHHHhcCCceEEe
Q 028700 109 EQHAHQLGKLLETFQV-VVNLIPFNPIGS----VS-----QFRT-----SSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 109 ~e~i~~l~~~l~~~~~-~v~lip~~~~g~----~~-----~~~~-----~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
-+.+.+-+++++++++ .|.|.|..+... .. .|.. -+.++++++.+.+. ++|+.+.+
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h-~~Gi~vil 88 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH-ARGIKVIL 88 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 4455555567777774 566777665431 11 1111 24588888888888 79998764
No 176
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=56.85 E-value=2e+02 Score=29.04 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=29.3
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
-.|| ||+|+|-+..++++|.+++..++.+++.+|
T Consensus 645 ~~VN--li~~~~~~~gD~~eik~lL~~~Gl~v~~vp 678 (917)
T PRK14477 645 GQVN--ILPGAHLTPADVEEIKEIVEAFGLDPVVVP 678 (917)
T ss_pred CcEE--EeCCCCCChhhHHHHHHHHHHcCCceEEec
Confidence 3455 779998888899999999999998888887
No 177
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=55.58 E-value=1.2e+02 Score=25.66 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=15.6
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
|+|+|.|+.. +-++..++++.+++.++
T Consensus 70 ~~~vi~gv~~~~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 70 RVPVIAGTGSNSTAEAIELTKFAEKAGA 97 (292)
T ss_pred CCcEEeecCCchHHHHHHHHHHHHHcCC
Confidence 3455666654 44555666666666653
No 178
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=54.37 E-value=1.3e+02 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=17.8
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
++|+|-|+.. +.++..++++.+++.++
T Consensus 69 ~~~vi~gv~~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 69 RVPVIAGTGSNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred CCcEEeccCCccHHHHHHHHHHHHHcCC
Confidence 4566777764 45666777777777764
No 179
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=54.26 E-value=75 Score=29.66 Aligned_cols=56 Identities=11% Similarity=0.239 Sum_probs=37.4
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
|+-|...+++++++++.+.+.|. ..+++ +|.|.. | . +..+.+..+ ..+-+++|+.|
T Consensus 147 t~sp~~t~e~~~~~a~~l~~~Ga----d~I~IkDtaGll~P~~~~~LV~~Lk~~~~-~~ipI~~H~Hn 209 (499)
T PRK12330 147 TVSPIHTVEGFVEQAKRLLDMGA----DSICIKDMAALLKPQPAYDIVKGIKEACG-EDTRINLHCHS 209 (499)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCC----CEEEeCCCccCCCHHHHHHHHHHHHHhCC-CCCeEEEEeCC
Confidence 34577788999999999988765 36888 999986 4 2 444444331 13556777655
No 180
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=53.48 E-value=1.6e+02 Score=26.02 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=77.1
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
|-|....+ -.+.++.+.+.+.. ..++.-+......++.+.+.+.+ .+.+.+.+.+....+++ +.+....++.+.
T Consensus 42 G~p~~~~~-~~e~i~~i~~~~~~---~~v~~~~r~~~~di~~a~~~g~~-~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~ 115 (363)
T TIGR02090 42 GFPIASEG-EFEAIKKISQEGLN---AEICSLARALKKDIDKAIDCGVD-SIHTFIATSPIHLKYKL-KKSRDEVLEKAV 115 (363)
T ss_pred eCCCCChH-HHHHHHHHHhcCCC---cEEEEEcccCHHHHHHHHHcCcC-EEEEEEcCCHHHHHHHh-CCCHHHHHHHHH
Confidence 44555433 35667777665431 23443334344568888887764 56676665554333333 333333456666
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
+.++ +++..|..|.+. +....-.+++.+.++++.+...++ .|.+ -.. .....+.++.++.+.+.
T Consensus 116 ~~i~-~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l---~DT-----~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 116 EAVE-YAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINI---ADT-----VGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHH-HHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEE---eCC-----CCccCHHHHHHHHHHHh
Confidence 7776 445567665544 444444557788888888777764 3332 221 22345667777766665
No 181
>PRK15452 putative protease; Provisional
Probab=52.97 E-value=95 Score=28.48 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=52.9
Q ss_pred EcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHH
Q 028700 33 STVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHA 112 (205)
Q Consensus 33 ~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i 112 (205)
-..|....++..+.++-| .|.+-.+..+-..+. +.++.+++.+.++ +++..|.+|.+.++.++. ++++
T Consensus 8 apag~~e~l~aAi~~GAD-aVY~G~~~~~~R~~~------~~f~~edl~eav~-~ah~~g~kvyvt~n~i~~----e~el 75 (443)
T PRK15452 8 SPAGTLKNMRYAFAYGAD-AVYAGQPRYSLRVRN------NEFNHENLALGIN-EAHALGKKFYVVVNIAPH----NAKL 75 (443)
T ss_pred EECCCHHHHHHHHHCCCC-EEEECCCccchhhhc------cCCCHHHHHHHHH-HHHHcCCEEEEEecCcCC----HHHH
Confidence 456777888888888875 888877776644322 2456778888887 556689999999998875 3445
Q ss_pred HHHHHHHh
Q 028700 113 HQLGKLLE 120 (205)
Q Consensus 113 ~~l~~~l~ 120 (205)
..+.++++
T Consensus 76 ~~~~~~l~ 83 (443)
T PRK15452 76 KTFIRDLE 83 (443)
T ss_pred HHHHHHHH
Confidence 55555544
No 182
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=52.26 E-value=1.5e+02 Score=25.17 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=18.3
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
++|+|-|+.. +-++..++++++++.++
T Consensus 70 ~~~viagv~~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 70 KVTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred CCeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence 4677777763 45566777777777774
No 183
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=52.19 E-value=42 Score=29.19 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=19.0
Q ss_pred HhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhc
Q 028700 89 KNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLET 121 (205)
Q Consensus 89 ~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~ 121 (205)
++.|.+ ++..||-.||+++-++.|++++.+
T Consensus 285 ~~~G~~---~~~~ip~lN~~~~fi~~La~~v~~ 314 (316)
T PF00762_consen 285 EEAGGE---EFVRIPCLNDSPEFIEALADLVRE 314 (316)
T ss_dssp HHHTCC---EEEE---STT-HHHHHHHHHHHHH
T ss_pred HHcCCc---eEEEeCCCCCCHHHHHHHHHHHHh
Confidence 345653 444588899999999999998764
No 184
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=51.19 E-value=14 Score=32.91 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=27.9
Q ss_pred CccCCCH---HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH
Q 028700 2 GEPLNNY---AALVEAVRIMTGLPFQVSPKRITVSTVGIVH 39 (205)
Q Consensus 2 GEPllq~---~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~ 39 (205)
|||+.++ ++..+++..||+.|+ |.+++|++..+
T Consensus 100 ge~~~~~~~~~~~~~l~~~lk~lGf-----~~v~et~~~ad 135 (374)
T TIGR02512 100 GEEFGMPIGTDVTGKMVAALRKLGF-----DYVFDTNFAAD 135 (374)
T ss_pred HHHhCCCccchHHHHHHHHHHHcCC-----CEEEECcHHHH
Confidence 7888875 678899999998888 89999998764
No 185
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=49.45 E-value=1.7e+02 Score=25.10 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 028700 10 ALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 89 (205)
Q Consensus 10 ~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 89 (205)
.+.++++.+|+. .+...+.||.. ....+++.++.+.| -+++| +.+.+++.+.++ .++
T Consensus 174 ~i~~av~~~r~~---~~~~kIeVEv~-tleea~ea~~~GaD-iI~lD-----------------n~~~e~l~~~v~-~l~ 230 (277)
T TIGR01334 174 DWGGAIGRLKQT---APERKITVEAD-TIEQALTVLQASPD-ILQLD-----------------KFTPQQLHHLHE-RLK 230 (277)
T ss_pred cHHHHHHHHHHh---CCCCCEEEECC-CHHHHHHHHHcCcC-EEEEC-----------------CCCHHHHHHHHH-HHh
Confidence 467788888865 23457999987 56678888888865 66676 235566666666 333
Q ss_pred hcCCcEEEEEEEeCCCCCCHHHHHHH
Q 028700 90 NSQQKIFIEYIMLDGVNDEEQHAHQL 115 (205)
Q Consensus 90 ~~~~~V~ir~~lIpGiNDs~e~i~~l 115 (205)
....++.+. .-.|+|-+ ++.++
T Consensus 231 ~~~~~~~le--asGGI~~~--ni~~y 252 (277)
T TIGR01334 231 FFDHIPTLA--AAGGINPE--NIADY 252 (277)
T ss_pred ccCCCEEEE--EECCCCHH--HHHHH
Confidence 234456555 55888754 54444
No 186
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=49.35 E-value=1.9e+02 Score=25.66 Aligned_cols=103 Identities=13% Similarity=0.169 Sum_probs=63.0
Q ss_pred ceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 51 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 51 ~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
+.+.+-|.+.|++.+..-+ ++..++++..++++. ++..|.+++-=..|=|=|=.-.+.|++...-+.......+.+-
T Consensus 165 ~EvaIGLETanD~ire~sI--NKGftF~df~~A~~~-ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iS 241 (358)
T COG1244 165 VEVAIGLETANDKIREDSI--NKGFTFEDFVRAAEI-IRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTIS 241 (358)
T ss_pred EEEEEecccCcHHHHHHhh--hcCCcHHHHHHHHHH-HHHcCCceeEEEEecccccChHHHHHHHHHHHHHhccCCCeEE
Confidence 4677889999999986653 456689999999874 4457777765444444443334445555555543333344556
Q ss_pred cCCCCC-----------CCCccCCcHHHHHHHHHHHH
Q 028700 131 FNPIGS-----------VSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 131 ~~~~g~-----------~~~~~~~~~e~l~~~~~~l~ 156 (205)
++|... ...|+||--..+-++.....
T Consensus 242 inptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~ 278 (358)
T COG1244 242 INPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAK 278 (358)
T ss_pred ecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHH
Confidence 666531 13477887666655555444
No 187
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=48.21 E-value=1.4e+02 Score=23.68 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..+....++ .+.+|-..+.. +. .......+++.+.
T Consensus 131 ~~~~~~~~i~~l~~~G~-----~ialddfg~~~~~~~~l~~l~~d-~iKld~~~~~~-----~~---~~~~~~~~l~~l~ 196 (241)
T smart00052 131 DDESAVATLQRLRELGV-----RIALDDFGTGYSSLSYLKRLPVD-LLKIDKSFVRD-----LQ---TDPEDEAIVQSII 196 (241)
T ss_pred ChHHHHHHHHHHHHCCC-----EEEEeCCCCcHHHHHHHHhCCCC-eEEECHHHHhh-----hc---cChhHHHHHHHHH
Confidence 34556688899988888 7999887754 334444444333 45555433321 11 0111234566666
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
.+.+..+.+| ++.|+.+ +++. +++..++
T Consensus 197 ~~~~~~~~~v-----ia~gVe~-~~~~----~~l~~~G 224 (241)
T smart00052 197 ELAQKLGLQV-----VAEGVET-PEQL----DLLRSLG 224 (241)
T ss_pred HHHHHCCCeE-----EEecCCC-HHHH----HHHHHcC
Confidence 6666666544 4668865 4443 3555555
No 188
>PRK09776 putative diguanylate cyclase; Provisional
Probab=47.63 E-value=1.1e+02 Score=30.50 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNAL 84 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l 84 (205)
-+.+.+.+.++.+++.|+ +++++--|.. ..+..+....+| .+-+|-..+. .+.. ...-..+++.+
T Consensus 971 ~~~~~~~~~~~~l~~~G~-----~~~lddfg~g~~~~~~l~~~~~d-~iKid~~~~~-----~~~~---~~~~~~~~~~i 1036 (1092)
T PRK09776 971 NHAESASRLVQKLRLAGC-----RVVLSDFGRGLSSFNYLKAFMAD-YLKLDGELVA-----NLHG---NLMDEMLISII 1036 (1092)
T ss_pred cCHHHHHHHHHHHHHCCc-----EEEEcCCCCCchHHHHHHhCCCC-EEEECHHHHH-----hHhc---ChhhHHHHHHH
Confidence 356778899999998888 8999976654 345555544433 5556633221 1110 01123466666
Q ss_pred HHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 85 KEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 85 ~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
..+.++.+.+++. .||-+ +++ .++++++++
T Consensus 1037 ~~~~~~~~~~~ia-----egVEt-~~~----~~~l~~~g~ 1066 (1092)
T PRK09776 1037 QGHAQRLGMKTIA-----GPVEL-PLV----LDTLSGIGV 1066 (1092)
T ss_pred HHHHHHcCCcEEe-----cccCC-HHH----HHHHHHcCC
Confidence 6676667766654 46644 443 346677764
No 189
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=47.57 E-value=1.7e+02 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcC
Q 028700 98 EYIMLDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 98 r~~lIpGiNDs~e~i~~l~~~l~~~ 122 (205)
+|.-||=.||+++.+..|++++++.
T Consensus 293 ~y~rip~lN~~p~fi~~la~lv~~~ 317 (320)
T COG0276 293 KYVRIPCLNDSPEFIDALADLVREL 317 (320)
T ss_pred cEEecCCCCCCHHHHHHHHHHHHHH
Confidence 4556888999999999999998754
No 190
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=46.64 E-value=19 Score=26.59 Aligned_cols=46 Identities=24% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHhcCCceEEecccccccccccccccccccccccCCCCCCCCCChhh
Q 028700 151 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIED 201 (205)
Q Consensus 151 ~~~~l~~~~Gi~~~i~~~~g~d~~~~Cgql~~~~~~~~~~~~~~~~~~~~~ 201 (205)
+.+.++ ..|+.+ ...+.| .++||+++..-.......+.||.++.|+
T Consensus 23 Ll~a~~-~~gi~i-~~~CgG---~g~C~tC~V~V~~~~~~~~l~~~~~~E~ 68 (117)
T PLN02593 23 LLEAAH-ENDIEL-EGACEG---SLACSTCHVIVMDEKVYNKLPEPTDEEN 68 (117)
T ss_pred HHHHHH-HcCCCC-CccCCC---cceeCCCEEEEecCccccCCCCCChHHH
Confidence 456666 678763 223455 5789999877755556677777777764
No 191
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=46.45 E-value=2e+02 Score=24.99 Aligned_cols=104 Identities=10% Similarity=0.153 Sum_probs=64.7
Q ss_pred ecCCCHHhhhhhcCCCCC-CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCce-EEEeecCCC
Q 028700 57 LHAPVQDVRCQIMPAARA-FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPI 134 (205)
Q Consensus 57 lk~~d~~~~~~i~~~~~~-~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~-v~lip~~~~ 134 (205)
+-.-|-|+-.++++..+. ...+.-++.|+. .++.+..+.--.=|+=|+-.+.+++.+..+=+.+.++. +-+=+|.+.
T Consensus 175 V~nHNvETVprL~~~VRp~A~Y~~SL~~L~~-~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqP 253 (306)
T COG0320 175 VFNHNVETVPRLYPRVRPGATYERSLSLLER-AKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQP 253 (306)
T ss_pred hhhcccccchhcccccCCCCcHHHHHHHHHH-HHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCC
Confidence 334555666666664332 245555666663 34456556666667778989988888888877777753 444466553
Q ss_pred CCCCCc---cCCcHHHHHHHHHHHHhcCCceE
Q 028700 135 GSVSQF---RTSSDDKVSSFQKILRGSYNIRT 163 (205)
Q Consensus 135 g~~~~~---~~~~~e~l~~~~~~l~~~~Gi~~ 163 (205)
. .... +-.++++.+.+++... +.|+..
T Consensus 254 S-~~HlpV~ryv~PeeF~~~~~~a~-~~GF~~ 283 (306)
T COG0320 254 S-RKHLPVQRYVTPEEFDELEEVAE-EMGFLH 283 (306)
T ss_pred c-cccCCceeccCHHHHHHHHHHHH-Hccchh
Confidence 2 1111 1235688888999888 789744
No 192
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=46.11 E-value=2.1e+02 Score=25.32 Aligned_cols=56 Identities=9% Similarity=-0.064 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcCCCceEEEeecCCCHHhhhhhcC
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMP 70 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~ 70 (205)
..+.++++.+++.|. .+.+=.+|... .+..+.+.+.+ .+..+.+.+|-..-++..|
T Consensus 255 P~~k~i~~~i~~~g~-----~~ilh~cG~~~~~l~~l~~~g~~-~v~~~~~~~dl~~ak~~~g 311 (378)
T cd03308 255 PSFKKVVEGLAARGQ-----RIFLFFEGDWERYLEYLQELPKG-KTVGLFEYGDPKKVKEKLG 311 (378)
T ss_pred HHHHHHHHHHHhcCC-----CEEEEcCCCcHHHHHHHHhcCCC-cEEEcCCCCCHHHHHHHhC
Confidence 345667777776544 34555667654 46666665532 3555556677666666554
No 193
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=46.09 E-value=90 Score=27.35 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=52.3
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEecccccccc
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDI 173 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~ 173 (205)
..+|+=+-||..-+.+.+..+++.+..++. .+++ +.-+ +..+..-+.+.++++.+.++ ..|+++ ++.|+.+
T Consensus 30 ~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~i---T~rq-g~ei~~i~~e~~~~v~~~L~-~iG~~~---G~~G~~v 101 (317)
T COG2221 30 YTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHI---TSRQ-GLEIPGISPEDADDVVEELR-EIGLPV---GSTGPAV 101 (317)
T ss_pred EEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEE---EecC-ceEeccCCHHHHHHHHHHHH-HcCCCC---CCcchhh
Confidence 677777778889999999999999999975 6665 2222 23345567899999999999 788866 4444433
No 194
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=45.88 E-value=2e+02 Score=24.98 Aligned_cols=110 Identities=13% Similarity=0.229 Sum_probs=74.1
Q ss_pred ceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCCc-eEEE
Q 028700 51 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQV-VVNL 128 (205)
Q Consensus 51 ~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~~-~v~l 128 (205)
++|-+-|-++++++-+.+.+. +.+....++++.+.+ +|.+|... +|-|.= ++.++.-+.++++..+++ .|.|
T Consensus 144 vWvELGLQT~h~~Tlk~iNRg---Hd~~~y~dav~r~rk-rgIkvc~H--iI~GLPgE~~~~mleTak~v~~~~v~GIKl 217 (312)
T COG1242 144 VWVELGLQTAHDKTLKRINRG---HDFACYVDAVKRLRK-RGIKVCTH--LINGLPGETRDEMLETAKIVAELGVDGIKL 217 (312)
T ss_pred EEEEeccchhhHHHHHHHhcc---cchHHHHHHHHHHHH-cCCeEEEE--EeeCCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 455577889999999998654 478888999886554 67777666 443332 667788888999988874 4666
Q ss_pred eecCCCCCCC---------CccCCc-HHHHHHHHHHHHhcCCceEEeccc
Q 028700 129 IPFNPIGSVS---------QFRTSS-DDKVSSFQKILRGSYNIRTTVRKQ 168 (205)
Q Consensus 129 ip~~~~g~~~---------~~~~~~-~e~l~~~~~~l~~~~Gi~~~i~~~ 168 (205)
-|+|=+- +. .+...+ ++.++-+.+.++ ..-.++.+.+-
T Consensus 218 H~Lhvvk-gT~m~k~Y~~G~l~~ls~eeYv~~~~d~le-~lpp~vviHRi 265 (312)
T COG1242 218 HPLHVVK-GTPMEKMYEKGRLKFLSLEEYVELVCDQLE-HLPPEVVIHRI 265 (312)
T ss_pred EEEEEec-CChHHHHHHcCCceeccHHHHHHHHHHHHH-hCCcceEEEEe
Confidence 6777653 32 234555 455566677777 56666666443
No 195
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=45.86 E-value=1.9e+02 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=13.5
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
+|+|.|+.. +.++.-++++.+++.++
T Consensus 70 ~pvi~gv~~~~t~~ai~~a~~A~~~Ga 96 (294)
T TIGR02313 70 IPFAPGTGALNHDETLELTKFAEEAGA 96 (294)
T ss_pred CcEEEECCcchHHHHHHHHHHHHHcCC
Confidence 455555542 33445556666666653
No 196
>PRK00035 hemH ferrochelatase; Reviewed
Probab=45.28 E-value=2e+02 Score=24.82 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=18.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcC
Q 028700 98 EYIMLDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 98 r~~lIpGiNDs~e~i~~l~~~l~~~ 122 (205)
++..+|++||+++-++.|++.+.+.
T Consensus 298 ~~~~~~~ln~~~~~i~~l~~~v~~~ 322 (333)
T PRK00035 298 EFRRIPCLNDSPEFIEALADLVREN 322 (333)
T ss_pred eEEECCCCCCCHHHHHHHHHHHHHH
Confidence 3566888888888888888877754
No 197
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=44.71 E-value=1.7e+02 Score=25.99 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=56.0
Q ss_pred EEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCc--EEEEEEEeCCCCC
Q 028700 30 ITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQK--IFIEYIMLDGVND 107 (205)
Q Consensus 30 ~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~--V~ir~~lIpGiND 107 (205)
--+.+.|....++....++-| .|.+..+......+. ...+.+++.+.++ ++.+.|++ |.+|..+. |+
T Consensus 8 ell~pag~l~~l~~ai~~GAD-aVY~G~~~~~~R~~a------~nfs~~~l~e~i~-~ah~~gkk~~V~~N~~~~---~~ 76 (347)
T COG0826 8 ELLAPAGNLEDLKAAIAAGAD-AVYIGEKEFGLRRRA------LNFSVEDLAEAVE-LAHSAGKKVYVAVNTLLH---ND 76 (347)
T ss_pred eeecCCCCHHHHHHHHHcCCC-EEEeCCccccccccc------ccCCHHHHHHHHH-HHHHcCCeEEEEeccccc---cc
Confidence 456788888888888888764 788888744433322 2467788888887 55557775 45555554 45
Q ss_pred CHHHHHHHHHHHhcCC
Q 028700 108 EEQHAHQLGKLLETFQ 123 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~ 123 (205)
..+.+....+++.+.+
T Consensus 77 ~~~~~~~~l~~l~e~G 92 (347)
T COG0826 77 ELETLERYLDRLVELG 92 (347)
T ss_pred hhhHHHHHHHHHHHcC
Confidence 6666677777777765
No 198
>PRK12435 ferrochelatase; Provisional
Probab=44.60 E-value=89 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=22.9
Q ss_pred HHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC
Q 028700 88 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 88 ~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~ 122 (205)
.++.|.. +.-+|=+||++..++.|++++.+.
T Consensus 276 a~~~G~~----~~r~~~lN~~p~fi~~La~lv~~~ 306 (311)
T PRK12435 276 TDEIGAK----YYRPEMPNADPLFIDALADVVLKK 306 (311)
T ss_pred HHHcCCc----EEeccCCCCCHHHHHHHHHHHHHH
Confidence 3445654 333788899999999999998753
No 199
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=44.51 E-value=2.2e+02 Score=25.09 Aligned_cols=151 Identities=12% Similarity=0.154 Sum_probs=79.5
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
|.+. +.-.++++.+.+.+. ...++.-.......++...+.+.+ .+.+.+...+.....++ +.+....++.+.+.
T Consensus 45 p~~~-~~~~e~i~~i~~~~~---~~~i~~~~r~~~~di~~a~~~g~~-~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~ 118 (365)
T TIGR02660 45 PAMG-EEERAVIRAIVALGL---PARLMAWCRARDADIEAAARCGVD-AVHISIPVSDLQIEAKL-RKDRAWVLERLARL 118 (365)
T ss_pred CCCC-HHHHHHHHHHHHcCC---CcEEEEEcCCCHHHHHHHHcCCcC-EEEEEEccCHHHHHHHh-CcCHHHHHHHHHHH
Confidence 5444 223455666654422 113333233334568887777754 56666654444444443 44444445566667
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCc--
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI-- 161 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi-- 161 (205)
++ +++..|..|.+.++ .+.--+.+.+.++++.+...++. .|-+-.. .....++++.++.+.+++..++
T Consensus 119 i~-~ak~~g~~v~~~~e--d~~r~~~~~l~~~~~~~~~~Ga~--~i~l~DT-----~G~~~P~~v~~lv~~l~~~~~v~l 188 (365)
T TIGR02660 119 VS-FARDRGLFVSVGGE--DASRADPDFLVELAEVAAEAGAD--RFRFADT-----VGILDPFSTYELVRALRQAVDLPL 188 (365)
T ss_pred HH-HHHhCCCEEEEeec--CCCCCCHHHHHHHHHHHHHcCcC--EEEEccc-----CCCCCHHHHHHHHHHHHHhcCCeE
Confidence 76 55557777766654 33333467778888877777642 2222221 2234667777777666523343
Q ss_pred eEEeccccc
Q 028700 162 RTTVRKQMG 170 (205)
Q Consensus 162 ~~~i~~~~g 170 (205)
.++..+-+|
T Consensus 189 ~~H~HNd~G 197 (365)
T TIGR02660 189 EMHAHNDLG 197 (365)
T ss_pred EEEecCCCC
Confidence 344444444
No 200
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.29 E-value=2.1e+02 Score=24.67 Aligned_cols=79 Identities=10% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCCCC-CCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 028700 11 LVEAVRIMTGLPFQVS-PKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 89 (205)
Q Consensus 11 l~~~l~~lk~~~i~~~-~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 89 (205)
+.++++.+|+. .+ ...+.||+.- ...+.+.+..+.| .+.+| ..+.+++.+.++ .++
T Consensus 182 i~~av~~~r~~---~~~~~~I~VEv~t-leea~eA~~~GaD-~I~LD-----------------n~~~e~l~~av~-~~~ 238 (288)
T PRK07428 182 IGEAITRIRQR---IPYPLTIEVETET-LEQVQEALEYGAD-IIMLD-----------------NMPVDLMQQAVQ-LIR 238 (288)
T ss_pred HHHHHHHHHHh---CCCCCEEEEECCC-HHHHHHHHHcCCC-EEEEC-----------------CCCHHHHHHHHH-HHH
Confidence 66777777765 22 3468888873 4556666677765 56676 234555655555 222
Q ss_pred hcCCcEEEEEEEeCCCCCCHHHHHHHH
Q 028700 90 NSQQKIFIEYIMLDGVNDEEQHAHQLG 116 (205)
Q Consensus 90 ~~~~~V~ir~~lIpGiNDs~e~i~~l~ 116 (205)
....++. +..+.|+|- +++.+++
T Consensus 239 ~~~~~i~--leAsGGIt~--~ni~~ya 261 (288)
T PRK07428 239 QQNPRVK--IEASGNITL--ETIRAVA 261 (288)
T ss_pred hcCCCeE--EEEECCCCH--HHHHHHH
Confidence 2234444 447889963 4555543
No 201
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=42.93 E-value=2e+02 Score=24.03 Aligned_cols=45 Identities=9% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCC
Q 028700 109 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 160 (205)
Q Consensus 109 ~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~G 160 (205)
.+.+.++.++++..+.++ ++-||.+. ..|+.+++..+.+..+ +.|
T Consensus 121 ~~~~~~l~~~~~~~~~kv-I~S~H~f~-----~tP~~~~l~~~~~~~~-~~g 165 (253)
T PRK02412 121 KDVVKEMVAFAHEHGVKV-VLSYHDFE-----KTPPKEEIVERLRKME-SLG 165 (253)
T ss_pred hHHHHHHHHHHHHcCCEE-EEeeCCCC-----CCcCHHHHHHHHHHHH-HhC
Confidence 345666777766555555 67888775 2344444444444444 344
No 202
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=42.87 E-value=90 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=26.2
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
-.|| ||++++ ++.++++|.++++.++.+++.+|
T Consensus 170 ~~VN--lig~~~-~~~D~~elk~lL~~~Gl~v~~l~ 202 (461)
T TIGR02931 170 DKIN--LITGWV-NPGDVKELKHLLEEMDIEANVLF 202 (461)
T ss_pred CcEE--EECCCC-ChhhHHHHHHHHHHcCCceEEee
Confidence 3455 578876 47889999999999998887776
No 203
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=42.62 E-value=2.6e+02 Score=25.24 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=28.4
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
-.|| +|+|+|-++.++++|.++++.++.++..+|
T Consensus 158 ~~VN--iig~~~~~~~D~~eik~lL~~~Gl~v~~l~ 191 (417)
T cd01966 158 RQVN--LLPGAHLTPGDVEELKDIIEAFGLEPIILP 191 (417)
T ss_pred CcEE--EECCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 3455 789998878899999999999998887775
No 204
>PRK06740 histidinol-phosphatase; Validated
Probab=42.45 E-value=2.3e+02 Score=24.71 Aligned_cols=148 Identities=8% Similarity=0.022 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHhhcC----CCCCCCCcEEEEcCCcH---HHHHHHhhc-CCCceEEEeecCCC------HHhhhhhcCCC
Q 028700 7 NYAALVEAVRIMTGL----PFQVSPKRITVSTVGIV---HAINKFHSD-LPGLNLAVSLHAPV------QDVRCQIMPAA 72 (205)
Q Consensus 7 q~~~l~~~l~~lk~~----~i~~~~~~~~v~T~G~~---~~~~~l~~~-~~~~~l~~slk~~d------~~~~~~i~~~~ 72 (205)
+++.-++.++.+|++ +|. ..+.+|..-+. ..+++++.. ..| .+..|+|.++ ++....+....
T Consensus 120 ~l~~Y~~ei~~LkekY~~~~I~---Il~GlE~dy~~~~~~~~~~~l~~~~~D-yvIgSVH~i~g~~~~~~~~~~~~~~~~ 195 (331)
T PRK06740 120 SLDDFTKAIEEAKERWSKRGVT---LKLGIEADYFIGGEQELQSLLALGDFD-YVIGSVHFLNGWGFDNPDTKEYFEEHD 195 (331)
T ss_pred hHHHHHHHHHHHHHHhccCCCe---EEEEEEeccCCCcHHHHHHHHhcCCCC-EEEEeeeEeCCcCCCCccHHHHhcCCC
Confidence 355567778888775 232 26777887543 356666643 333 6779999875 22222221111
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCC------CCHHHHHHHHHHHhcCCceEEEeecCCCCCCC-Cc--cCC
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN------DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS-QF--RTS 143 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN------Ds~e~i~~l~~~l~~~~~~v~lip~~~~g~~~-~~--~~~ 143 (205)
...-.+...+.+.+.++...-.|.=..=+|.=+| +..+.++++++.+++.+..++ +|.-+... .. .-|
T Consensus 196 ~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g~~lE---INt~~~~r~~~~e~yP 272 (331)
T PRK06740 196 LYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETNTATE---INAGLYYRYPVREMCP 272 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcCCEEE---EECccccCCCCCCCCc
Confidence 0001122333444444422223333332443222 123478888888888875433 34421011 11 124
Q ss_pred cHHHHHHHHHHHHhcCCceEEec
Q 028700 144 SDDKVSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 144 ~~e~l~~~~~~l~~~~Gi~~~i~ 166 (205)
+.+ +.+.+. ++|+.++++
T Consensus 273 ~~~----il~~~~-e~Gv~~tlg 290 (331)
T PRK06740 273 SPL----FLQVLA-KHEVPITLS 290 (331)
T ss_pred CHH----HHHHHH-HCCCeEEEe
Confidence 433 344555 577777664
No 205
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=42.41 E-value=2.5e+02 Score=24.98 Aligned_cols=91 Identities=15% Similarity=0.284 Sum_probs=58.9
Q ss_pred HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHH-HHHHHHHhcCCcEEEEEEE-eCCCCCCHHHHHHH---
Q 028700 41 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMN-ALKEYQKNSQQKIFIEYIM-LDGVNDEEQHAHQL--- 115 (205)
Q Consensus 41 ~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~-~l~~~~~~~~~~V~ir~~l-IpGiNDs~e~i~~l--- 115 (205)
++.+...+. ..+.+-+.+-+++..+.+.. ....+.+++ .++ .+...+..+.+-+.+ .||- +++++++.
T Consensus 303 ~~~~~~~g~-~~~~iG~Esgs~~~l~~~~k---~~~~~~~~~~a~~-~~~~~~~~~~~~~i~G~pge--t~ed~~~t~~~ 375 (490)
T COG1032 303 LKLLREAGL-RRVYIGIESGSEELLKKINK---GITTEEVLEEAVK-IAKEHGLRVKLYFIVGLPGE--TEEDVKETIEL 375 (490)
T ss_pred HHHHhhCCC-cceEEeccCCCHHHHHHHhC---CCChHHHHHHHHH-HHHhCCceeeEEEEEcCCCC--CHHHHHHHHHH
Confidence 333334443 47889999999999999753 446777775 555 444456555554433 3554 44456665
Q ss_pred HHHHhcCCce--EEEeecCCCCCCCC
Q 028700 116 GKLLETFQVV--VNLIPFNPIGSVSQ 139 (205)
Q Consensus 116 ~~~l~~~~~~--v~lip~~~~g~~~~ 139 (205)
+++++..+.. +...+|.|++ +..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~p~p-~t~ 400 (490)
T COG1032 376 AKFIKKLGPKLYVSPSPFVPLP-GTP 400 (490)
T ss_pred HHHHHHhCccceEEEeeeeCCC-CCc
Confidence 7888887754 8889999985 443
No 206
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=42.19 E-value=2.1e+02 Score=24.21 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=71.9
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--H---HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--H---AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~---~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|.|.+.++...+.+..+++. -+..-+.+||.|.. + .+.-+....++ ...+++.+++-..+..++ ..+
T Consensus 53 G~~s~d~~~~~e~~~~IR~~---~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~pd-~asl~~gs~n~~~~~~~~----~n~ 124 (272)
T PF05853_consen 53 GRPSLDPELYAEVVEAIRAA---CPDLIVQPTTGGGGGPDPEERLAHVEAWKPD-MASLNPGSMNFGTRDRVY----INT 124 (272)
T ss_dssp S-EE--HHHHHHHHHHHHHH---STTSEEEEESSTTTTSGHHHHCTHHHHH--S-EEEEE-S-EEESGGCSEE-------
T ss_pred CCcCCCHHHHHHHHHHHHHH---CCCeEEEeCCCCCCCCCHHHHHHHHHhcCCC-eEEecccccccccCCcee----cCC
Confidence 67888888888999999886 12336889998842 1 22222222333 566777777655222222 113
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC----CceEEEeecCCCCCCCCccCCcHHHHHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF----QVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 152 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~----~~~v~lip~~~~g~~~~~~~~~~e~l~~~~ 152 (205)
.+.+.+.++.+.+ .| |++++-+. +..++..+..|++.- +..++|+--.+.| .+++.+.+..+.
T Consensus 125 ~~~~~~~~~~~~e-~G--i~pe~ev~-----d~~~l~~~~~l~~~G~l~~p~~~~~vlG~~~g-----~~~~~~~l~~~l 191 (272)
T PF05853_consen 125 PADARELARRMRE-RG--IKPEIEVF-----DPGHLRNARRLIEKGLLPGPLLVNFVLGVPGG-----MPATPENLLAML 191 (272)
T ss_dssp HHHHHHHHHHHHH-TT---EEEEEES-----SHHHHHHHHHHHHTTSS-SSEEEEEEES-TTS-------S-HHHHHHHH
T ss_pred HHHHHHHHHHHHH-cC--CeEEEEEE-----cHHHHHHHHHHHHCCCCCCCeEEEEcccCCCC-----CCCCHHHHHHHH
Confidence 4556666654333 55 55555554 466888888887753 1345554422221 367888888888
Q ss_pred HHHH
Q 028700 153 KILR 156 (205)
Q Consensus 153 ~~l~ 156 (205)
+.+.
T Consensus 192 ~~l~ 195 (272)
T PF05853_consen 192 DMLP 195 (272)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8877
No 207
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=41.90 E-value=2.2e+02 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=16.4
Q ss_pred EEEEeCCCC-CCHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVN-DEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiN-Ds~e~i~~l~~~l~~~~~ 124 (205)
|+|+|-|+. .+-++..++++++++.++
T Consensus 70 ~~pvi~gv~~~~t~~~i~la~~a~~~Ga 97 (290)
T TIGR00683 70 QIALIAQVGSVNLKEAVELGKYATELGY 97 (290)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 355666664 234556667777777764
No 208
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=41.58 E-value=2e+02 Score=23.78 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCccCCC-------HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH----HHHHHHhhcCCCceEEEeecCCCHHhhhhh-
Q 028700 1 MGEPLNN-------YAALVEAVRIMTGLPFQVSPKRITVSTVGIV----HAINKFHSDLPGLNLAVSLHAPVQDVRCQI- 68 (205)
Q Consensus 1 mGEPllq-------~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i- 68 (205)
|..|++| .+...++++.+.+. .. -+-+-|-... ..++.+.+..++--+.-|+|++|.-...-=
T Consensus 1 ~~~p~LQvALD~~~l~~Ai~~a~~v~~~-~d----iiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~m 75 (217)
T COG0269 1 MSPPLLQVALDLLDLEEAIEIAEEVADY-VD----IIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARM 75 (217)
T ss_pred CCCcceEeeecccCHHHHHHHHHHhhhc-ce----EEEeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHH
Confidence 5567776 55666666666543 11 1333443322 235666655555456699999986543221
Q ss_pred --------cCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCC-C
Q 028700 69 --------MPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS-Q 139 (205)
Q Consensus 69 --------~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~-~ 139 (205)
+-+..--..+.|...++.. ++++..+.+.+. |. .+. .+-+++++.++ ++.+-||.-=... .
T Consensus 76 a~~aGAd~~tV~g~A~~~TI~~~i~~A-~~~~~~v~iDl~---~~-~~~---~~~~~~l~~~g--vd~~~~H~g~D~q~~ 145 (217)
T COG0269 76 AFEAGADWVTVLGAADDATIKKAIKVA-KEYGKEVQIDLI---GV-WDP---EQRAKWLKELG--VDQVILHRGRDAQAA 145 (217)
T ss_pred HHHcCCCEEEEEecCCHHHHHHHHHHH-HHcCCeEEEEee---cC-CCH---HHHHHHHHHhC--CCEEEEEecccHhhc
Confidence 1111222466777777744 447888888854 22 233 34555666554 5566778621111 1
Q ss_pred ccCCcHHHHHHHHHHHHhcCCceEEecc
Q 028700 140 FRTSSDDKVSSFQKILRGSYNIRTTVRK 167 (205)
Q Consensus 140 ~~~~~~e~l~~~~~~l~~~~Gi~~~i~~ 167 (205)
-..++.+.+..+++... .|..+.+-|
T Consensus 146 G~~~~~~~l~~ik~~~~--~g~~vAVaG 171 (217)
T COG0269 146 GKSWGEDDLEKIKKLSD--LGAKVAVAG 171 (217)
T ss_pred CCCccHHHHHHHHHhhc--cCceEEEec
Confidence 13455788888888764 676666643
No 209
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=40.55 E-value=1.1e+02 Score=20.24 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEe
Q 028700 113 HQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 113 ~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
-+++.+++.++.+|.++...+.- ++..+++-...+.+.++ +.|+++..
T Consensus 12 ~E~A~~l~~~g~~vtli~~~~~~----~~~~~~~~~~~~~~~l~-~~gV~v~~ 59 (80)
T PF00070_consen 12 IELAEALAELGKEVTLIERSDRL----LPGFDPDAAKILEEYLR-KRGVEVHT 59 (80)
T ss_dssp HHHHHHHHHTTSEEEEEESSSSS----STTSSHHHHHHHHHHHH-HTTEEEEE
T ss_pred HHHHHHHHHhCcEEEEEeccchh----hhhcCHHHHHHHHHHHH-HCCCEEEe
Confidence 45788888888889898887753 24456666677788898 68987754
No 210
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=39.83 E-value=48 Score=22.02 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCceEEecccccccccccccccc
Q 028700 146 DKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLV 181 (205)
Q Consensus 146 e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~~~Cgql~ 181 (205)
.+.-++.+.++ +.|+.+.+. +-=+.+.++||...
T Consensus 12 ~~a~~~ek~lk-~~gi~~~li-P~P~~i~~~CG~al 45 (73)
T PF11823_consen 12 HDAMKAEKLLK-KNGIPVRLI-PTPREISAGCGLAL 45 (73)
T ss_pred HHHHHHHHHHH-HCCCcEEEe-CCChhccCCCCEEE
Confidence 34445556666 577766542 22233567777654
No 211
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=39.63 E-value=59 Score=23.94 Aligned_cols=34 Identities=6% Similarity=0.134 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCC-cHHHHHHHhh
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVG-IVHAINKFHS 46 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G-~~~~~~~l~~ 46 (205)
++.+.++|+.+++.|+ .+++-||+ .......++.
T Consensus 31 ~~gv~e~L~~Lk~~g~-----~l~i~Sn~~~~~~~~~~l~ 65 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGF-----LLALASYNDDPHVAYELLK 65 (128)
T ss_pred HHHHHHHHHHHHHCCe-----EEEEEeCCCCHHHHHHHHH
Confidence 4679999999998887 89999998 4444445444
No 212
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=38.79 E-value=3.3e+02 Score=25.46 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-----H-----HHHHHhhcC-CCceEE-EeecCCCHHhhhhhcCCCC
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-----H-----AINKFHSDL-PGLNLA-VSLHAPVQDVRCQIMPAAR 73 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-----~-----~~~~l~~~~-~~~~l~-~slk~~d~~~~~~i~~~~~ 73 (205)
=|++.+-++++.++... ...+.+-++..--. | .++-+..++ +. ++. +-+.+.|+...++= +-
T Consensus 258 PnPealekL~~Gir~~A--P~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpG-nVaAfGlEsaDp~V~r~N---nL 331 (560)
T COG1031 258 PNPEALEKLFRGIRNVA--PNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPG-NVAAFGLESADPRVARKN---NL 331 (560)
T ss_pred CCHHHHHHHHHHHHhhC--CCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCC-ceeeeeccccCHHHHhhc---cc
Confidence 47899999999988741 11123333433211 2 245555553 32 444 99999999997772 22
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEE-EeCCCC-------CCHHHHHHHHHHHhcC---C---ceEEEeecCCC
Q 028700 74 AFPLEKLMNALKEYQKNSQQKIFIEYI-MLDGVN-------DEEQHAHQLGKLLETF---Q---VVVNLIPFNPI 134 (205)
Q Consensus 74 ~~~~~~i~~~l~~~~~~~~~~V~ir~~-lIpGiN-------Ds~e~i~~l~~~l~~~---~---~~v~lip~~~~ 134 (205)
.-+-|+++++++-..+..+.+-+=.+| |+||+| .+.|..+-=-+|++++ + .+||+=+...+
T Consensus 332 ~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~f 406 (560)
T COG1031 332 NASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVF 406 (560)
T ss_pred cCCHHHHHHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeec
Confidence 347899999998655544545554444 568887 4666666667777765 2 25666555555
No 213
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=38.65 E-value=3.1e+02 Score=25.10 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=26.6
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 96 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 96 ~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
.|| ||+|++. +.++++|.+++..++.+++.+|
T Consensus 168 ~VN--ii~~~~~-~gD~~eik~lL~~~Gl~vn~l~ 199 (457)
T TIGR02932 168 KLN--VFPGWVN-PGDVVLLKHYFSEMGVDANILM 199 (457)
T ss_pred cEE--EECCCCC-hHHHHHHHHHHHHcCCCEEEEe
Confidence 456 7789875 6789999999999998888875
No 214
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=38.63 E-value=1.5e+02 Score=27.45 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=34.8
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
+.|-...+++.+.++.+.+.|. ..+++ +|.|.. | . ++.+.+.. .+-+.+|+.|
T Consensus 156 ~sp~~t~~y~~~~a~~l~~~Ga----d~I~IkDtaG~l~P~~v~~Lv~alk~~~---~~pi~~H~Hn 215 (468)
T PRK12581 156 TSPVHTLNYYLSLVKELVEMGA----DSICIKDMAGILTPKAAKELVSGIKAMT---NLPLIVHTHA 215 (468)
T ss_pred eCCcCcHHHHHHHHHHHHHcCC----CEEEECCCCCCcCHHHHHHHHHHHHhcc---CCeEEEEeCC
Confidence 5666678889999999887655 36888 999976 4 2 34443322 3446666655
No 215
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=38.55 E-value=2e+02 Score=22.72 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+...+.+.++.+++.|+ +++++--|... .+..+....++ .+.+|-..+..-.. .......++.+.
T Consensus 130 ~~~~~~~~~~~l~~~G~-----~l~ld~~g~~~~~~~~l~~~~~d-~iKld~~~~~~~~~--------~~~~~~~l~~l~ 195 (240)
T cd01948 130 DLEEALATLRRLRALGV-----RIALDDFGTGYSSLSYLKRLPVD-YLKIDRSFVRDIET--------DPEDRAIVRAII 195 (240)
T ss_pred CHHHHHHHHHHHHHCCC-----eEEEeCCCCcHhhHHHHHhCCCC-EEEECHHHHHhHhc--------ChhhHHHHHHHH
Confidence 34558888999988888 79998777653 45555544443 45555333221110 011234455555
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
..++..+.+| +..|+.+ ++ -.++++.++
T Consensus 196 ~~~~~~~~~v-----ia~gVe~-~~----~~~~~~~~g 223 (240)
T cd01948 196 ALAHSLGLKV-----VAEGVET-EE----QLELLRELG 223 (240)
T ss_pred HHHHHCCCeE-----EEEecCC-HH----HHHHHHHcC
Confidence 5555556543 4667755 33 344556665
No 216
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=38.47 E-value=52 Score=28.66 Aligned_cols=35 Identities=3% Similarity=-0.029 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
.+.+.++|+.++++|+ .++|-|||..+.+..++..
T Consensus 150 dp~V~EtL~eLkekGi-----kLaIvTNg~Re~v~~~Le~ 184 (303)
T PHA03398 150 DPFVYDSLDELKERGC-----VLVLWSYGNREHVVHSLKE 184 (303)
T ss_pred ChhHHHHHHHHHHCCC-----EEEEEcCCChHHHHHHHHH
Confidence 3668999999999988 8999999987766666653
No 217
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.38 E-value=1.9e+02 Score=24.42 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
.++++.++++.+.+.|. ..+++ +|.|.. | . ++.+.+..+ ++.+++|.-|. ..+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~g~----~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~~l~~H~Hnd----------~Gla~An 212 (273)
T cd07941 149 NPEYALATLKAAAEAGA----DWLVLCDTNGGTLPHEIAEIVKEVRERLP--GVPLGIHAHND----------SGLAVAN 212 (273)
T ss_pred CHHHHHHHHHHHHhCCC----CEEEEecCCCCCCHHHHHHHHHHHHHhCC--CCeeEEEecCC----------CCcHHHH
Confidence 46777788877766544 24555 788864 3 2 334433332 25566666652 2334555
Q ss_pred HHHHHH
Q 028700 80 LMNALK 85 (205)
Q Consensus 80 i~~~l~ 85 (205)
.+.+++
T Consensus 213 ~laA~~ 218 (273)
T cd07941 213 SLAAVE 218 (273)
T ss_pred HHHHHH
Confidence 665554
No 218
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=38.31 E-value=2.4e+02 Score=23.71 Aligned_cols=152 Identities=9% Similarity=0.055 Sum_probs=77.6
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
|-|-..+. ..+.++.+.+.+.. ..+..-.......+++..+.+.+ .+.+.+...+.-...+ .+.+....++.+.
T Consensus 42 G~P~~~~~-~~~~~~~l~~~~~~---~~v~~~~r~~~~di~~a~~~g~~-~i~i~~~~S~~~~~~~-~~~~~~e~~~~~~ 115 (262)
T cd07948 42 TSPAASPQ-SRADCEAIAKLGLK---AKILTHIRCHMDDARIAVETGVD-GVDLVFGTSPFLREAS-HGKSITEIIESAV 115 (262)
T ss_pred ECCCCCHH-HHHHHHHHHhCCCC---CcEEEEecCCHHHHHHHHHcCcC-EEEEEEecCHHHHHHH-hCCCHHHHHHHHH
Confidence 33555432 45555666543221 12322223334567888887764 5666665444333332 2333333344455
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCC
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 160 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~G 160 (205)
+.++ +++..|..|.+ -+...+-.+.+.+.++++.+.+.++ .+. +-.. +...+++++.++.+.+++..+
T Consensus 116 ~~i~-~a~~~G~~v~~--~~eda~r~~~~~l~~~~~~~~~~g~~~i~---l~Dt-----~G~~~P~~v~~~~~~~~~~~~ 184 (262)
T cd07948 116 EVIE-FVKSKGIEVRF--SSEDSFRSDLVDLLRVYRAVDKLGVNRVG---IADT-----VGIATPRQVYELVRTLRGVVS 184 (262)
T ss_pred HHHH-HHHHCCCeEEE--EEEeeCCCCHHHHHHHHHHHHHcCCCEEE---ECCc-----CCCCCHHHHHHHHHHHHHhcC
Confidence 5555 44445655444 4555555567788888888888764 333 2222 223456677777766663344
Q ss_pred ce--EEeccccc
Q 028700 161 IR--TTVRKQMG 170 (205)
Q Consensus 161 i~--~~i~~~~g 170 (205)
+. ++..+.+|
T Consensus 185 ~~i~~H~Hn~~G 196 (262)
T cd07948 185 CDIEFHGHNDTG 196 (262)
T ss_pred CeEEEEECCCCC
Confidence 33 34444343
No 219
>PLN02417 dihydrodipicolinate synthase
Probab=38.03 E-value=2.5e+02 Score=23.73 Aligned_cols=26 Identities=4% Similarity=-0.040 Sum_probs=14.3
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
+|+|-|+.. +.++.-++++.++..++
T Consensus 71 ~pvi~gv~~~~t~~~i~~a~~a~~~Ga 97 (280)
T PLN02417 71 IKVIGNTGSNSTREAIHATEQGFAVGM 97 (280)
T ss_pred CcEEEECCCccHHHHHHHHHHHHHcCC
Confidence 455555553 34455556666666653
No 220
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=37.72 E-value=1.4e+02 Score=28.41 Aligned_cols=54 Identities=11% Similarity=0.392 Sum_probs=35.9
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCCH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPVQ 62 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d~ 62 (205)
+.|-...+++.++++.+.+.|. ..+++ +|+|.. | . ++.+.+.. .+-+.+|+.|.
T Consensus 148 ~~p~~~~~~~~~~a~~l~~~Ga----d~i~i~Dt~G~l~P~~~~~lv~~lk~~~---~~pi~~H~Hnt 208 (593)
T PRK14040 148 TSPVHTLQTWVDLAKQLEDMGV----DSLCIKDMAGLLKPYAAYELVSRIKKRV---DVPLHLHCHAT 208 (593)
T ss_pred eCCccCHHHHHHHHHHHHHcCC----CEEEECCCCCCcCHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence 4566678999999999987655 36787 999986 4 2 44444332 24466666553
No 221
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=37.52 E-value=1.9e+02 Score=24.54 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=52.6
Q ss_pred EEEEcCCcH------HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhc---CCcEEEEEE
Q 028700 30 ITVSTVGIV------HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNS---QQKIFIEYI 100 (205)
Q Consensus 30 ~~v~T~G~~------~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~---~~~V~ir~~ 100 (205)
-+||=|+.. ..+.+..+..++ ++.+++|+.-.=+|.+-... ....+.+......... -+.+.+..|
T Consensus 38 ~~VEiN~TFYa~p~~~t~~~W~~~~p~-~FrFsvK~~~~iTH~~~l~~----~~~~~~~~~~~~~~~L~~klg~il~Q~P 112 (263)
T COG1801 38 NTVEINSTFYAPPSPETVLRWAEETPD-DFRFSVKAPRAITHQRRLKE----CDFELWEFFLEPLAPLGERLGPILFQLP 112 (263)
T ss_pred CEEEECCcccCCCCHHHHHHHHHhCCC-CeEEEEEecccccchhhhcc----chHHHHHHHHHHHHhhhcccceEEEecC
Confidence 455555532 247777776664 79999999877777443322 1223333333222222 246677766
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCC
Q 028700 101 MLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 101 lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
|-+..++++++.|.+|+..+.
T Consensus 113 --psf~~~~~n~~~l~~f~~~l~ 133 (263)
T COG1801 113 --PSFKYTPENLEYLEKFLDLLP 133 (263)
T ss_pred --CcccCChhhHHHHHHHHHhcc
Confidence 778888888888888886553
No 222
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=37.47 E-value=2.4e+02 Score=23.50 Aligned_cols=111 Identities=11% Similarity=0.030 Sum_probs=59.5
Q ss_pred HHHHHHHhhcC----CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHH
Q 028700 38 VHAINKFHSDL----PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAH 113 (205)
Q Consensus 38 ~~~~~~l~~~~----~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~ 113 (205)
...++...+.+ .+ .+.+.+ ++++...++-.+.+....++++.+.++ ++++.|..|.+..+-.+. -+++.+.
T Consensus 72 ~~~v~~a~~~~~~~~~~-~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~-~a~~~G~~v~~~~~~~~~--~~~~~~~ 146 (268)
T cd07940 72 KKDIDAAAEALKPAKVD-RIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVE-YAKSHGLDVEFSAEDATR--TDLDFLI 146 (268)
T ss_pred HhhHHHHHHhCCCCCCC-EEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHH-HHHHcCCeEEEeeecCCC--CCHHHHH
Confidence 34455555544 33 344444 334333333333433334556666666 444567777776665443 3577778
Q ss_pred HHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCC
Q 028700 114 QLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN 160 (205)
Q Consensus 114 ~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~G 160 (205)
++++-+...++. -|-+-.. +....++++.++.+.+++.++
T Consensus 147 ~~~~~~~~~G~~--~i~l~DT-----~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 147 EVVEAAIEAGAT--TINIPDT-----VGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred HHHHHHHHcCCC--EEEECCC-----CCCCCHHHHHHHHHHHHHhCC
Confidence 888888777642 2333322 233566777777777663344
No 223
>PRK10551 phage resistance protein; Provisional
Probab=37.21 E-value=2.9e+02 Score=25.64 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 87 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~ 87 (205)
+.+.+.++.+++.|+ +++++--|.. ..+..+....+| .+.+| ...-+.+.. ...-..+++.+...
T Consensus 397 ~~~~~~l~~Lr~~G~-----~ialDDFGtg~ssl~~L~~l~vD-~lKID-----~~fv~~i~~---~~~~~~il~~ii~l 462 (518)
T PRK10551 397 EEATKLFAWLHSQGI-----EIAIDDFGTGHSALIYLERFTLD-YLKID-----RGFIQAIGT---ETVTSPVLDAVLTL 462 (518)
T ss_pred HHHHHHHHHHHHCCC-----EEEEECCCCCchhHHHHHhCCCC-EEEEC-----HHHHhhhcc---ChHHHHHHHHHHHH
Confidence 456678888888888 7999887754 234444333322 44444 222222211 11123466666666
Q ss_pred HHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 88 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 88 ~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
++..+..|+ ..||- ++++ .++++..++
T Consensus 463 a~~lgi~vV-----AEGVE-t~~q----~~~L~~~Gv 489 (518)
T PRK10551 463 AKRLNMLTV-----AEGVE-TPEQ----ARWLRERGV 489 (518)
T ss_pred HHHCCCEEE-----EEeCC-cHHH----HHHHHHcCC
Confidence 666675554 55774 4444 446666663
No 224
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=36.96 E-value=1.8e+02 Score=26.64 Aligned_cols=52 Identities=13% Similarity=0.362 Sum_probs=33.3
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
.|-..++++.++++.+.+.|. ..+++ +|.|.. | . ++.+.+.. .+-+.+|+.|
T Consensus 148 ~p~~~~~~~~~~a~~l~~~Ga----d~I~i~Dt~G~l~P~~v~~lv~alk~~~---~~pi~~H~Hn 206 (448)
T PRK12331 148 SPVHTIDYFVKLAKEMQEMGA----DSICIKDMAGILTPYVAYELVKRIKEAV---TVPLEVHTHA 206 (448)
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CEEEEcCCCCCCCHHHHHHHHHHHHHhc---CCeEEEEecC
Confidence 466678899999999887655 35777 999975 4 2 33443332 2345666554
No 225
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=36.90 E-value=2.3e+02 Score=24.15 Aligned_cols=92 Identities=22% Similarity=0.390 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
..++++.++++.+.+.|. ..+++ +|.|.. | . ++.+....+ .+.+++|.-|. ....+.
T Consensus 144 ~~~~~~~~~~~~~~~~G~----~~i~l~DT~G~~~P~~v~~l~~~l~~~~~--~~~i~~H~Hnd----------~Gla~A 207 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPI----KRIMLPDTLGILSPFETYTYISDMVKRYP--NLHFDFHAHND----------YDLAVA 207 (280)
T ss_pred CCHHHHHHHHHHHHHcCC----CEEEecCCCCCCCHHHHHHHHHHHHhhCC--CCeEEEEeCCC----------CCHHHH
Confidence 358999999999987655 35777 999975 4 2 444444332 35577777662 233455
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCCCCC--HHHHHHHHHHHh
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGVNDE--EQHAHQLGKLLE 120 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs--~e~i~~l~~~l~ 120 (205)
+.+.+++ .|.. ++..- +.|+-.. .-.++.++.+++
T Consensus 208 N~laA~~-----aGa~-~vd~s-~~GlGe~aGN~~~E~~v~~L~ 244 (280)
T cd07945 208 NVLAAVK-----AGIK-GLHTT-VNGLGERAGNAPLASVIAVLK 244 (280)
T ss_pred HHHHHHH-----hCCC-EEEEe-cccccccccCccHHHHHHHHH
Confidence 6666665 3543 45554 4444321 113455666664
No 226
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=36.84 E-value=2.5e+02 Score=23.37 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCceEEEeecCCCC
Q 028700 109 EQHAHQLGKLLETFQVVVNLIPFNPIG 135 (205)
Q Consensus 109 ~e~i~~l~~~l~~~~~~v~lip~~~~g 135 (205)
.+.+.++.+.++..+.+| ++-||.+.
T Consensus 111 ~~~~~~l~~~~~~~~~~v-I~S~H~F~ 136 (238)
T PRK13575 111 IEKHQRLITHLQQYNKEV-VISHHNFE 136 (238)
T ss_pred hHHHHHHHHHHHHcCCEE-EEecCCCC
Confidence 445666777776666555 67888875
No 227
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=36.04 E-value=2.6e+02 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=14.7
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
+|+|-|+.+ +-++.-++++.+++.++
T Consensus 71 ~~vi~gv~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 71 VPVIAGVGANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp SEEEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred eEEEecCcchhHHHHHHHHHHHhhcCc
Confidence 334445554 45566667777776663
No 228
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=35.83 E-value=2.8e+02 Score=23.77 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCC-HHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDE-EQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQ 152 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs-~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~ 152 (205)
++.++-.+.++...+..+. |+|+|-|+..+ -++.-++++++++.++ .+=+ .-|+ -++++.++-.+.|+
T Consensus 54 Ls~eEr~~v~~~~v~~~~g----rvpviaG~g~~~t~eai~lak~a~~~Gad~il~--v~Py----Y~k~~~~gl~~hf~ 123 (299)
T COG0329 54 LTLEERKEVLEAVVEAVGG----RVPVIAGVGSNSTAEAIELAKHAEKLGADGILV--VPPY----YNKPSQEGLYAHFK 123 (299)
T ss_pred cCHHHHHHHHHHHHHHHCC----CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEE--eCCC----CcCCChHHHHHHHH
Confidence 3445555555544444444 34466665543 4566778888888874 2211 1222 12333445555566
Q ss_pred HHHHhcCCceEEe
Q 028700 153 KILRGSYNIRTTV 165 (205)
Q Consensus 153 ~~l~~~~Gi~~~i 165 (205)
.+.+ ..++++.+
T Consensus 124 ~ia~-a~~lPvil 135 (299)
T COG0329 124 AIAE-AVDLPVIL 135 (299)
T ss_pred HHHH-hcCCCEEE
Confidence 6666 55665544
No 229
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.44 E-value=42 Score=26.25 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.++++|+ ++++-|||....++..+.
T Consensus 95 ~~~~~~L~~L~~~g~-----~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 95 PDVPAGLRALKERGY-----RLAILSNGSPAMLKSLVK 127 (198)
T ss_pred CCHHHHHHHHHHCCC-----eEEEEeCCCHHHHHHHHH
Confidence 458899999998887 899999998776555554
No 230
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=35.32 E-value=2.8e+02 Score=23.57 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=65.3
Q ss_pred HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeC-CCCCCHHHHHHHHHH
Q 028700 40 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLD-GVNDEEQHAHQLGKL 118 (205)
Q Consensus 40 ~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIp-GiNDs~e~i~~l~~~ 118 (205)
.++...+.+.+ .+.+.+.+.+....+++ +.+....++.+.+.++ +++..|..|.+...-+. .+-.+++.+.++++.
T Consensus 79 ~~~~A~~~g~~-~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~-~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 79 SVDWIKSAGAK-VLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIE-YAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHHHCCCC-EEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHH-HHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 46666666654 67777755554444443 3444445666666666 44546666555544221 234578888888888
Q ss_pred HhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCC---ceEEeccccc
Q 028700 119 LETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN---IRTTVRKQMG 170 (205)
Q Consensus 119 l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~G---i~~~i~~~~g 170 (205)
+.+.++ .|. +-.. ....++.++.++.+.+++..+ +.++..+.+|
T Consensus 156 ~~~~G~~~i~---l~DT-----~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~G 203 (280)
T cd07945 156 LSDLPIKRIM---LPDT-----LGILSPFETYTYISDMVKRYPNLHFDFHAHNDYD 203 (280)
T ss_pred HHHcCCCEEE---ecCC-----CCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCC
Confidence 887774 333 2222 222345566666666542232 3445555444
No 231
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=34.98 E-value=2.7e+02 Score=23.25 Aligned_cols=96 Identities=18% Similarity=0.352 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLE 78 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~ 78 (205)
..++++.++++.+.+.|. ..+++ +|.|.. | . ++.+....++..+.+++|.-|. ..+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~G~----~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~----------~GlA~A 205 (268)
T cd07940 140 TDLDFLIEVVEAAIEAGA----TTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHND----------LGLAVA 205 (268)
T ss_pred CCHHHHHHHHHHHHHcCC----CEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCC----------cchHHH
Confidence 457888888888876544 36777 888875 3 2 3444433321125677777662 233445
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCCCCC--HHHHHHHHHHHhcC
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGVNDE--EQHAHQLGKLLETF 122 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs--~e~i~~l~~~l~~~ 122 (205)
+.+.+++ .|.. +|..- +.|+-.. --.++.++.++...
T Consensus 206 n~laAi~-----aG~~-~iD~s-~~GlG~~aGN~~tE~lv~~L~~~ 244 (268)
T cd07940 206 NSLAAVE-----AGAR-QVECT-INGIGERAGNAALEEVVMALKTR 244 (268)
T ss_pred HHHHHHH-----hCCC-EEEEE-eeccccccccccHHHHHHHHHhc
Confidence 6666665 3433 35555 3344110 11345666666544
No 232
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=34.77 E-value=2.5e+02 Score=22.76 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCceEEEeecCCCC
Q 028700 111 HAHQLGKLLETFQVVVNLIPFNPIG 135 (205)
Q Consensus 111 ~i~~l~~~l~~~~~~v~lip~~~~g 135 (205)
.+.++...++..+.+| ++-||.+.
T Consensus 101 ~~~~~~~~~~~~~~ki-I~S~H~f~ 124 (225)
T cd00502 101 LLEELINSRKKGNTKI-IGSYHDFS 124 (225)
T ss_pred HHHHHHHHHHhCCCEE-EEEeccCC
Confidence 3444444444334444 56777664
No 233
>PRK10060 RNase II stability modulator; Provisional
Probab=34.62 E-value=3.5e+02 Score=25.84 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+|-..+ +.+. .......+++.+.
T Consensus 539 ~~~~~~~~l~~L~~~G~-----~ialDdfGtg~ssl~~L~~l~~d-~iKiD~sfv-----~~i~---~~~~~~~~v~~ii 604 (663)
T PRK10060 539 NEELALSVIQQFSQLGA-----QVHLDDFGTGYSSLSQLARFPID-AIKLDQSFV-----RDIH---KQPVSQSLVRAIV 604 (663)
T ss_pred CHHHHHHHHHHHHHCCC-----EEEEECCCCchhhHHHHHhCCCC-EEEECHHHH-----hccc---cCcchHHHHHHHH
Confidence 56677888888888887 7888876654 334444443333 444552111 1111 1112345666666
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
..++..+.+|+. .||- +++ -.++++.+++
T Consensus 605 ~~a~~lg~~viA-----eGVE-t~~----q~~~l~~~G~ 633 (663)
T PRK10060 605 AVAQALNLQVIA-----EGVE-TAK----EDAFLTKNGV 633 (663)
T ss_pred HHHHHCCCcEEE-----ecCC-CHH----HHHHHHHcCC
Confidence 677767766554 4664 333 4456777764
No 234
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=34.61 E-value=46 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.++++|+ +++|-|||.....+.++.
T Consensus 98 pgv~e~L~~Lk~~G~-----~l~I~Sn~s~~~~~~~~~ 130 (220)
T TIGR01691 98 PDVPPALEAWLQLGL-----RLAVYSSGSVPAQKLLFG 130 (220)
T ss_pred cCHHHHHHHHHHCCC-----EEEEEeCCCHHHHHHHHh
Confidence 568999999999888 899999998765444443
No 235
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=34.45 E-value=47 Score=24.17 Aligned_cols=34 Identities=6% Similarity=0.139 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCc--------HHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGI--------VHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~--------~~~~~~l~~~ 47 (205)
+.+.++++.|++.|+ .+++-||+. ...+++++..
T Consensus 28 ~~v~~~l~~L~~~g~-----~l~i~Sn~~~~~~~~~~~~~~~~~l~~ 69 (132)
T TIGR01662 28 PEVPDALAELKEAGY-----KVVIVTNQSGIGRGKFSSGRVARRLEE 69 (132)
T ss_pred CCHHHHHHHHHHCCC-----EEEEEECCccccccHHHHHHHHHHHHH
Confidence 568899999998888 799999987 4456666554
No 236
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=34.36 E-value=2.8e+02 Score=24.29 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+..++..++++.|++.|. ++.++|+|-. +.+.++..+ ++ | -.|.+....+.+..- .+.+++++..+
T Consensus 143 ~~~d~y~~li~~~~~~g~-----~vilD~Sg~~--L~~~L~~~P--~l---I-KPN~~EL~~~~g~~~-~~~~d~i~~a~ 208 (310)
T COG1105 143 VPPDAYAELIRILRQQGA-----KVILDTSGEA--LLAALEAKP--WL---I-KPNREELEALFGREL-TTLEDVIKAAR 208 (310)
T ss_pred CCHHHHHHHHHHHHhcCC-----eEEEECChHH--HHHHHccCC--cE---E-ecCHHHHHHHhCCCC-CChHHHHHHHH
Confidence 345777788888887766 7888888743 444444432 11 1 245555566665432 24556666666
Q ss_pred HHHH
Q 028700 86 EYQK 89 (205)
Q Consensus 86 ~~~~ 89 (205)
....
T Consensus 209 ~l~~ 212 (310)
T COG1105 209 ELLA 212 (310)
T ss_pred HHHH
Confidence 5333
No 237
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=33.15 E-value=55 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++++.++++|+ +++|-|+|....++.++..
T Consensus 83 ~g~~e~l~~l~~~g~-----~~~IvS~~~~~~~~~~l~~ 116 (201)
T TIGR01491 83 DYAEELVRWLKEKGL-----KTAIVSGGIMCLAKKVAEK 116 (201)
T ss_pred ccHHHHHHHHHHCCC-----EEEEEeCCcHHHHHHHHHH
Confidence 457889999998887 8999999987766666543
No 238
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.07 E-value=1.2e+02 Score=25.99 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEe-CCCC-------------CCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCc
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIML-DGVN-------------DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF 140 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lI-pGiN-------------Ds~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~ 140 (205)
...+..++-+. ++.+.| ++|+|| .|.. ....++.+++++.++.++.|-|.--+..+ . ..
T Consensus 29 ~~t~~~k~yID-fAa~~G----~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~-~-~~ 101 (273)
T PF10566_consen 29 ATTETQKRYID-FAAEMG----IEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETG-G-NV 101 (273)
T ss_dssp SSHHHHHHHHH-HHHHTT-----SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHT-T-BH
T ss_pred CCHHHHHHHHH-HHHHcC----CCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcc-h-hh
Confidence 35677777776 555466 567788 4442 14568999999999999888665444432 1 11
Q ss_pred cCCcHHHHHHHHHHHHhcCCceE
Q 028700 141 RTSSDDKVSSFQKILRGSYNIRT 163 (205)
Q Consensus 141 ~~~~~e~l~~~~~~l~~~~Gi~~ 163 (205)
... +.+++++...++ +.|+.-
T Consensus 102 ~~~-~~~~~~~f~~~~-~~Gv~G 122 (273)
T PF10566_consen 102 ANL-EKQLDEAFKLYA-KWGVKG 122 (273)
T ss_dssp HHH-HCCHHHHHHHHH-HCTEEE
T ss_pred HhH-HHHHHHHHHHHH-HcCCCE
Confidence 111 112355556666 577653
No 239
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=33.06 E-value=68 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 104 GVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 104 GiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
|+-|--.++.+++++++..+. .+.++|+|+.+
T Consensus 21 GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~ 53 (497)
T PRK14508 21 GIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTG 53 (497)
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 455654578899999998884 68999999976
No 240
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=32.96 E-value=3.2e+02 Score=23.50 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=50.3
Q ss_pred CCCHHHHHHH---HHHHHHhcCCcEEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCceEEEeecCCCCC-CCCcc-
Q 028700 74 AFPLEKLMNA---LKEYQKNSQQKIFIEYIMLDGVNDE-------EQHAHQLGKLLETFQVVVNLIPFNPIGS-VSQFR- 141 (205)
Q Consensus 74 ~~~~~~i~~~---l~~~~~~~~~~V~ir~~lIpGiNDs-------~e~i~~l~~~l~~~~~~v~lip~~~~g~-~~~~~- 141 (205)
.+++++-++. +-++++..|..|--++=-|.|..|. --+.++..+|++..++. .|-. .+|. ...|+
T Consensus 110 ~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD--~LAv-aiGt~HG~Y~~ 186 (285)
T PRK07709 110 HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGID--CLAP-ALGSVHGPYKG 186 (285)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCC--EEEE-eecccccCcCC
Confidence 3455543333 2234555788888888888887653 12456677788777642 2322 2231 22332
Q ss_pred --CCcHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 142 --TSSDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 142 --~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
..+.+.++++++ ..+++..+.|..|
T Consensus 187 ~p~L~~~~L~~I~~----~~~iPLVLHGgSG 213 (285)
T PRK07709 187 EPNLGFAEMEQVRD----FTGVPLVLHGGTG 213 (285)
T ss_pred CCccCHHHHHHHHH----HHCCCEEEeCCCC
Confidence 244566555544 3567788877776
No 241
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=32.73 E-value=71 Score=27.80 Aligned_cols=35 Identities=3% Similarity=-0.031 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
.+.+.++|+.|+++|+ .++|-|+|....+.+.+..
T Consensus 148 dPgV~EaL~~LkekGi-----kLaIaTS~~Re~v~~~L~~ 182 (301)
T TIGR01684 148 DPRIYDSLTELKKRGC-----ILVLWSYGDRDHVVESMRK 182 (301)
T ss_pred CHHHHHHHHHHHHCCC-----EEEEEECCCHHHHHHHHHH
Confidence 3679999999999988 8999999988776666654
No 242
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=32.70 E-value=1.6e+02 Score=25.99 Aligned_cols=64 Identities=9% Similarity=0.038 Sum_probs=46.4
Q ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceE
Q 028700 93 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 163 (205)
Q Consensus 93 ~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~ 163 (205)
...++|+- +|+ .-+.++++.|++++..++ ..+++-.-.. -.+.-.+.+.+..+.+.++ ..|+..
T Consensus 29 ~~~mvRv~-ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQn----I~l~~I~~edl~~i~~~L~-~~Gl~~ 93 (341)
T TIGR02066 29 VIYTVKAG-TPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNN----VEFLVSDESKIQPLIDELE-EVGFPV 93 (341)
T ss_pred cEEEEEeC-CCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCC----EEEecCCHHHHHHHHHHHH-hccCCC
Confidence 34566654 778 889999999999999987 3566542222 2245567889999999988 688754
No 243
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=32.55 E-value=73 Score=28.67 Aligned_cols=60 Identities=18% Similarity=0.417 Sum_probs=39.7
Q ss_pred EeecCCCHHhhh-hhcCCCCCCCHHHHHHHHHHHHHhcCC-cEEEE-------E-EEeCCCCCCHHHHHH
Q 028700 55 VSLHAPVQDVRC-QIMPAARAFPLEKLMNALKEYQKNSQQ-KIFIE-------Y-IMLDGVNDEEQHAHQ 114 (205)
Q Consensus 55 ~slk~~d~~~~~-~i~~~~~~~~~~~i~~~l~~~~~~~~~-~V~ir-------~-~lIpGiNDs~e~i~~ 114 (205)
.|+-+.++..|. .+++.+++--++.|++-+++|.++.+. +|++= | -++||+||+.|++-+
T Consensus 183 PdFIAaNQ~~RAnnvI~g~~keqle~Ir~Dir~Fke~~~ldkViVLWTANTERy~~V~~GlNdT~enl~~ 252 (512)
T KOG0693|consen 183 PDFIAANQGSRANNVIKGTKKEQLEQIRKDIREFKEENKLDKVIVLWTANTERYSNVIPGLNDTAENLLE 252 (512)
T ss_pred cchhhcCccccccccccCchHHHHHHHHHHHHHHHHhcCCceEEEEEecCcceeeccccccchHHHHHHH
Confidence 566666665554 345566665688888889888776543 45442 2 378999999776543
No 244
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=31.81 E-value=3.8e+02 Score=24.05 Aligned_cols=84 Identities=4% Similarity=-0.019 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCC-CCCCC-----CccCCcHHHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-IGSVS-----QFRTSSDDKVSS 150 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~-~g~~~-----~~~~~~~e~l~~ 150 (205)
++.+.+-++.-+-..++.+.+++. || |.+-.+.++++.+...+..|-.+.|+. .+... .++.++.+++++
T Consensus 308 ~~~~~~~~~~~l~~~~r~~~~~v~-ip---drPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~ 383 (409)
T TIGR02079 308 IERTEEIRERSLLYEGLKHYFIVR-FP---QRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAG 383 (409)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEE-eC---CCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHH
Confidence 334444444333335666666655 44 344466666663333333444556663 33111 134567899999
Q ss_pred HHHHHHhcCCceEEe
Q 028700 151 FQKILRGSYNIRTTV 165 (205)
Q Consensus 151 ~~~~l~~~~Gi~~~i 165 (205)
+.+.++ +.|+.+..
T Consensus 384 i~~~L~-~~Gy~~~~ 397 (409)
T TIGR02079 384 LLERMA-AADIHYED 397 (409)
T ss_pred HHHHHH-HCCCCeEE
Confidence 999999 79987754
No 245
>PRK06801 hypothetical protein; Provisional
Probab=31.69 E-value=3.3e+02 Score=23.35 Aligned_cols=77 Identities=6% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHhcCCcEEEEEEEeCCCCCC----------HHHHHHHHHHHhcCCceEEEeecCCCCC-CCCcc---CCcHHHHHHHH
Q 028700 87 YQKNSQQKIFIEYIMLDGVNDE----------EQHAHQLGKLLETFQVVVNLIPFNPIGS-VSQFR---TSSDDKVSSFQ 152 (205)
Q Consensus 87 ~~~~~~~~V~ir~~lIpGiNDs----------~e~i~~l~~~l~~~~~~v~lip~~~~g~-~~~~~---~~~~e~l~~~~ 152 (205)
+++..|..|-.+.=-|.|-.++ .-+.++..+|.+..++ +.|-. ++|. ..+|. ..+.+.+++++
T Consensus 123 ~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgv--D~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~ 199 (286)
T PRK06801 123 MCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGI--DALAV-AIGNAHGKYKGEPKLDFARLAAIH 199 (286)
T ss_pred HHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCc--CEEEe-ccCCCCCCCCCCCCCCHHHHHHHH
Confidence 4455676665555556554432 1133556667765653 44444 4442 23343 24566666555
Q ss_pred HHHHhcCCceEEeccccc
Q 028700 153 KILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 153 ~~l~~~~Gi~~~i~~~~g 170 (205)
+. .+++....|..|
T Consensus 200 ~~----~~~PLVlHGGSg 213 (286)
T PRK06801 200 QQ----TGLPLVLHGGSG 213 (286)
T ss_pred Hh----cCCCEEEECCCC
Confidence 53 456666655544
No 246
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=31.39 E-value=2.3e+02 Score=27.00 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=33.8
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
.|...++++++.++.+.+.|. ..+++ +|+|.. | . ++.+.+.. .+-+.+|+.|
T Consensus 148 ~p~~t~~~~~~~a~~l~~~Ga----d~I~i~Dt~G~~~P~~~~~lv~~lk~~~---~~pi~~H~Hn 206 (592)
T PRK09282 148 SPVHTIEKYVELAKELEEMGC----DSICIKDMAGLLTPYAAYELVKALKEEV---DLPVQLHSHC 206 (592)
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CEEEECCcCCCcCHHHHHHHHHHHHHhC---CCeEEEEEcC
Confidence 366678899999999987665 35777 999975 4 2 34443332 2445666555
No 247
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=31.29 E-value=2.6e+02 Score=21.94 Aligned_cols=88 Identities=22% Similarity=0.283 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 028700 11 LVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 89 (205)
Q Consensus 11 l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 89 (205)
+.+.++.+++.|+ +++++--|... .+..+....++ .+.+|...+..-. ......+++.+..+++
T Consensus 136 ~~~~l~~l~~~G~-----~i~ld~~g~~~~~~~~l~~l~~~-~ikld~~~~~~~~---------~~~~~~~l~~l~~~~~ 200 (236)
T PF00563_consen 136 LLENLRRLRSLGF-----RIALDDFGSGSSSLEYLASLPPD-YIKLDGSLVRDLS---------DEEAQSLLQSLINLAK 200 (236)
T ss_dssp HHHHHHHHHHCT------EEEEEEETSTCGCHHHHHHHCGS-EEEEEHHGHTTTT---------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-----eeEeeeccCCcchhhhhhhcccc-cceeecccccccc---------hhhHHHHHHHHHHHhh
Confidence 4578888888888 78888766542 34445444443 5667755542110 0112345666666666
Q ss_pred hcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 90 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 90 ~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
..+.+| ++.|+++ ++ -.+++++++
T Consensus 201 ~~~~~v-----ia~gVe~-~~----~~~~l~~~G 224 (236)
T PF00563_consen 201 SLGIKV-----IAEGVES-EE----QLELLKELG 224 (236)
T ss_dssp HTT-EE-----EEECE-S-HH----HHHHHHHTT
T ss_pred cccccc-----ceeecCC-HH----HHHHHHHcC
Confidence 666544 4677766 33 344556665
No 248
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=31.21 E-value=2.3e+02 Score=27.02 Aligned_cols=52 Identities=17% Similarity=0.396 Sum_probs=34.2
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
-|..+.+++.++++.+.+.|. ..+++ +|+|.. | . ++.+.+.. .+-+.+|+.|
T Consensus 143 ~p~~~~~~~~~~~~~~~~~Ga----d~I~i~Dt~G~~~P~~v~~lv~~lk~~~---~~pi~~H~Hn 201 (582)
T TIGR01108 143 SPVHTLETYLDLAEELLEMGV----DSICIKDMAGILTPKAAYELVSALKKRF---GLPVHLHSHA 201 (582)
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CEEEECCCCCCcCHHHHHHHHHHHHHhC---CCceEEEecC
Confidence 355678999999999988655 36787 999976 4 2 44444332 2335666655
No 249
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=30.94 E-value=42 Score=21.89 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhcCC
Q 028700 106 NDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 106 NDs~e~i~~l~~~l~~~~ 123 (205)
.-+++++.+|++|+++++
T Consensus 74 ~ls~~e~~~l~ayl~slk 91 (91)
T PF00034_consen 74 ILSDEEIADLAAYLRSLK 91 (91)
T ss_dssp TSSHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 346789999999998764
No 250
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=30.92 E-value=52 Score=25.84 Aligned_cols=34 Identities=6% Similarity=-0.003 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++|+.++++|+ .++|-||+....++.+++.
T Consensus 88 ~g~~~~L~~l~~~g~-----~~~i~S~~~~~~~~~~l~~ 121 (213)
T TIGR01449 88 PGVEATLGALRAKGL-----RLGLVTNKPTPLARPLLEL 121 (213)
T ss_pred CCHHHHHHHHHHCCC-----eEEEEeCCCHHHHHHHHHH
Confidence 458899999998887 7999999877666555553
No 251
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=30.78 E-value=3.1e+02 Score=22.75 Aligned_cols=145 Identities=10% Similarity=0.137 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH------H-HHHHHhhcCCCceEEEeecCC--CHHhhhhhc---C----
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV------H-AINKFHSDLPGLNLAVSLHAP--VQDVRCQIM---P---- 70 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~------~-~~~~l~~~~~~~~l~~slk~~--d~~~~~~i~---~---- 70 (205)
++-.+.+-++++.+.|+. ..|+=|-=.=|+ + .++.+. . .+.+|+|-| +|+.+-+-. |
T Consensus 23 d~~~l~~el~~l~~~g~d--~lHiDVMDG~FVPNitfGp~~i~~i~-~----~~~~DvHLMv~~P~~~i~~~~~aGad~I 95 (228)
T PRK08091 23 NWLKFNETLTTLSENQLR--LLHFDIADGQFSPFFTVGAIAIKQFP-T----HCFKDVHLMVRDQFEVAKACVAAGADIV 95 (228)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeccCCCcCCccccCHHHHHHhC-C----CCCEEEEeccCCHHHHHHHHHHhCCCEE
Confidence 556777888888776542 224444222232 2 344442 2 233666665 466643221 1
Q ss_pred -CCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHH
Q 028700 71 -AARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVS 149 (205)
Q Consensus 71 -~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~ 149 (205)
.+-+- ...+.+.++ ++++.|.+++.-+.+=|+ ... +.+..++.... .|-++-.+|-..+.+|.+...+++.
T Consensus 96 t~H~Ea-~~~~~~~l~-~Ik~~g~~~kaGlalnP~--Tp~---~~i~~~l~~vD-~VLiMtV~PGfgGQ~f~~~~l~KI~ 167 (228)
T PRK08091 96 TLQVEQ-THDLALTIE-WLAKQKTTVLIGLCLCPE--TPI---SLLEPYLDQID-LIQILTLDPRTGTKAPSDLILDRVI 167 (228)
T ss_pred EEcccC-cccHHHHHH-HHHHCCCCceEEEEECCC--CCH---HHHHHHHhhcC-EEEEEEECCCCCCccccHHHHHHHH
Confidence 11110 112344444 334467667888887786 233 44445554333 4556666773236778777888999
Q ss_pred HHHHHHHhcCCce--EEecc
Q 028700 150 SFQKILRGSYNIR--TTVRK 167 (205)
Q Consensus 150 ~~~~~l~~~~Gi~--~~i~~ 167 (205)
++++++. ++|++ +.+-|
T Consensus 168 ~lr~~~~-~~~~~~~IeVDG 186 (228)
T PRK08091 168 QVENRLG-NRRVEKLISIDG 186 (228)
T ss_pred HHHHHHH-hcCCCceEEEEC
Confidence 9999888 67765 44443
No 252
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=30.76 E-value=2.5e+02 Score=26.01 Aligned_cols=51 Identities=14% Similarity=0.376 Sum_probs=32.6
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
|-...+++.++++.+.+.|. ..+++ +|+|.. | . ++.+.+.. .+-+.+|+.|
T Consensus 148 p~~t~e~~~~~a~~l~~~Ga----d~I~i~Dt~G~l~P~~v~~Lv~~lk~~~---~vpI~~H~Hn 205 (467)
T PRK14041 148 PVHTLEYYLEFARELVDMGV----DSICIKDMAGLLTPKRAYELVKALKKKF---GVPVEVHSHC 205 (467)
T ss_pred CCCCHHHHHHHHHHHHHcCC----CEEEECCccCCcCHHHHHHHHHHHHHhc---CCceEEEecC
Confidence 54567889999998887665 36787 999976 4 2 33443332 2346666655
No 253
>PRK12568 glycogen branching enzyme; Provisional
Probab=30.61 E-value=2e+02 Score=28.28 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCc-eEEEeecCC--CCCCCCc-----c-----CCcHHHHHHHHHHHHhcCCceEEe
Q 028700 111 HAHQLGKLLETFQV-VVNLIPFNP--IGSVSQF-----R-----TSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 111 ~i~~l~~~l~~~~~-~v~lip~~~--~g~~~~~-----~-----~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
-+++++.+++++++ .|+|+|... .+..-.| . --+.++++.+.+.+- +.||.|.+
T Consensus 271 la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H-~~Gi~VIl 337 (730)
T PRK12568 271 LAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACH-RAGIGVIL 337 (730)
T ss_pred HHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 45677899999995 799999953 3211111 1 134688888888888 79998865
No 254
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=30.34 E-value=71 Score=27.39 Aligned_cols=113 Identities=12% Similarity=0.243 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
++.+++.++.+++.|+ .+|++ -|.. .+.++|.++++ ...+-.|+.. .|.+.+++ -+.+.++-++.+.
T Consensus 153 fk~IlE~ikevr~Mgm-----EvCvT-LGMv~~qQAkeLKdAGL-TAYNHNlDTS-REyYskvI---tTRtYDdRL~Ti~ 221 (380)
T KOG2900|consen 153 FKRILEMIKEVRDMGM-----EVCVT-LGMVDQQQAKELKDAGL-TAYNHNLDTS-REYYSKVI---TTRTYDDRLQTIK 221 (380)
T ss_pred HHHHHHHHHHHHcCCc-----eeeee-eccccHHHHHHHHhccc-eecccCccch-hhhhcccc---eecchHHHHHHHH
Confidence 5667777888777666 57764 4444 25777777764 2333333332 22233322 1223444455554
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCC
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 134 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~ 134 (205)
...+ .|.+| =.==|=|.-.++++--.++.-+..+..+.+-+|+|.+
T Consensus 222 nvr~-aGikv--CsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~L 267 (380)
T KOG2900|consen 222 NVRE-AGIKV--CSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRL 267 (380)
T ss_pred HHHH-hccee--cccccccccccccceeeeeeeeccCCCCCcccccceE
Confidence 3333 34333 2334557777776655555555555555666666654
No 255
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.21 E-value=4.1e+02 Score=23.91 Aligned_cols=105 Identities=17% Similarity=0.210 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEe-----ecCC--------CCCCCC
Q 028700 73 RAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI-----PFNP--------IGSVSQ 139 (205)
Q Consensus 73 ~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~li-----p~~~--------~g~~~~ 139 (205)
..++.++.++.++.+.+.++ -++|+=|+-+ + +.+.+.++-+..+..+.+. -.++ .+...-
T Consensus 259 ~~~t~~eai~~~~~l~e~~~-i~~iEdPl~~---~---D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 259 KKLTSEELIDYYKELVKKYP-IVSIEDPFDE---D---DWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cccCHHHHHHHHHHHHHhCC-cEEEEeCCCC---c---CHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 34567788887776666554 6788988643 1 3444555544432111110 0000 000000
Q ss_pred --cc---CCcHHHHHHHHHHHHhcCCceEEeccccccccc---------ccccccccccc
Q 028700 140 --FR---TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS---------GACGQLVVNLP 185 (205)
Q Consensus 140 --~~---~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~---------~~Cgql~~~~~ 185 (205)
.+ .-.--+..++.++.+ .+|+.+.+..+.|.... .+|+|++....
T Consensus 332 v~ik~~~iGGite~~~ia~lA~-~~G~~~~~sh~sget~d~~~adlava~~~~~ik~G~~ 390 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAK-KNGYGVVVSHRSGETEDTFIADLAVALGAGQIKTGAP 390 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHH-HcCCeEEccCCCchhHHHHHHHHHHHhCcCccccCCC
Confidence 01 123456667777788 79999988887775443 45666655443
No 256
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=30.21 E-value=4.3e+02 Score=24.11 Aligned_cols=96 Identities=9% Similarity=0.116 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQ 88 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~ 88 (205)
..+.+.++.+++. ++...+.+-+......++.+.+.+.| -+-+.+..-.-..-+.++++.. ..+..+.+ +.+++
T Consensus 250 ~~~~~~i~~i~~~---~~~~~vi~G~v~t~~~a~~l~~aGad-~i~vg~g~G~~~~t~~~~~~g~-p~~~~i~~-~~~~~ 323 (450)
T TIGR01302 250 IYVIDSIKEIKKT---YPDLDIIAGNVATAEQAKALIDAGAD-GLRVGIGPGSICTTRIVAGVGV-PQITAVYD-VAEYA 323 (450)
T ss_pred hHHHHHHHHHHHh---CCCCCEEEEeCCCHHHHHHHHHhCCC-EEEECCCCCcCCccceecCCCc-cHHHHHHH-HHHHH
Confidence 4566777777765 22224445444445567777777653 4445554322112223333321 12222232 33333
Q ss_pred HhcCCcEEEEEEEeC--CCCCCHHHHHHHH
Q 028700 89 KNSQQKIFIEYIMLD--GVNDEEQHAHQLG 116 (205)
Q Consensus 89 ~~~~~~V~ir~~lIp--GiNDs~e~i~~l~ 116 (205)
+..+ +|+|+ |+..+.+-+++|+
T Consensus 324 ~~~~------vpviadGGi~~~~di~kAla 347 (450)
T TIGR01302 324 AQSG------IPVIADGGIRYSGDIVKALA 347 (450)
T ss_pred hhcC------CeEEEeCCCCCHHHHHHHHH
Confidence 3233 57888 9998765444443
No 257
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=30.04 E-value=1.9e+02 Score=21.03 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=39.1
Q ss_pred CcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHH
Q 028700 93 QKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 154 (205)
Q Consensus 93 ~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~ 154 (205)
.-+++|+.---|+++.-+++++|-+-.++.+-.|-..|.|++| .. ++-+.+++..+...
T Consensus 23 v~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~ILaFPcnqFg-~Q--Ep~~~~ei~~~~~~ 81 (108)
T PF00255_consen 23 VLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEILAFPCNQFG-NQ--EPGSNEEIKEFCKE 81 (108)
T ss_dssp EEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEBSTTT-TT--TSSCHHHHHHHHCH
T ss_pred EEEEEecccccCCccccHHHHHHHHHHhcCCeEEEeeehHHhc-cc--cCCCHHHHHHHHHh
Confidence 3568888888888775555555555555555567778999997 33 45566776555443
No 258
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=29.64 E-value=3.7e+02 Score=23.16 Aligned_cols=113 Identities=13% Similarity=0.252 Sum_probs=61.2
Q ss_pred ceEEEeecCC-CHHhhhhhcC--------CCCCCCHHHHHHH---HHHHHHhcCCcEEEEEEEeCCCCCC---HH-----
Q 028700 51 LNLAVSLHAP-VQDVRCQIMP--------AARAFPLEKLMNA---LKEYQKNSQQKIFIEYIMLDGVNDE---EQ----- 110 (205)
Q Consensus 51 ~~l~~slk~~-d~~~~~~i~~--------~~~~~~~~~i~~~---l~~~~~~~~~~V~ir~~lIpGiNDs---~e----- 110 (205)
+-+.+.|||. +.+.-++-+. -...+++++-++. +.+++...|..|--++=-|.|.+|. .+
T Consensus 75 VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~ 154 (286)
T PRK12738 75 MPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFL 154 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcC
Confidence 4566777776 3333332211 1233455544333 2235555788888888888887664 11
Q ss_pred -HHHHHHHHHhcCCceEEEeecCCCC-CCCCcc---CCcHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 111 -HAHQLGKLLETFQVVVNLIPFNPIG-SVSQFR---TSSDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 111 -~i~~l~~~l~~~~~~v~lip~~~~g-~~~~~~---~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
+.++..+|++.-++ +.|-.- +| ....|+ ..+.+.++++++. .+++..+.|..|
T Consensus 155 T~peea~~Fv~~Tgv--D~LAva-iGt~HG~Y~~~p~Ldfd~l~~I~~~----~~vPLVLHGgSG 212 (286)
T PRK12738 155 TDPQEAKRFVELTGV--DSLAVA-IGTAHGLYSKTPKIDFQRLAEIREV----VDVPLVLHGASD 212 (286)
T ss_pred CCHHHHHHHHHHhCC--CEEEec-cCcccCCCCCCCcCCHHHHHHHHHH----hCCCEEEeCCCC
Confidence 45677788876663 333321 22 122343 2455666666554 356777777666
No 259
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=29.41 E-value=1.9e+02 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=29.3
Q ss_pred hcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEe
Q 028700 90 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLI 129 (205)
Q Consensus 90 ~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~li 129 (205)
.+|.++++-+=-.+ .|+++++..+-+++.+.++.+-+-
T Consensus 367 kfgvp~VVAIN~F~--tDt~~Ei~~i~~~~~~~gv~~~ls 404 (554)
T COG2759 367 KFGVPVVVAINKFP--TDTEAEIAAIEKLCEEHGVEVALS 404 (554)
T ss_pred HcCCCeEEEeccCC--CCCHHHHHHHHHHHHHcCCceeeh
Confidence 47888877654443 799999999999999998666543
No 260
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.39 E-value=1.6e+02 Score=18.89 Aligned_cols=55 Identities=7% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeecCCCCCCC-----CccCCcHHHHHHHHHHHHhcCCceE
Q 028700 107 DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVS-----QFRTSSDDKVSSFQKILRGSYNIRT 163 (205)
Q Consensus 107 Ds~e~i~~l~~~l~~~~~~v~lip~~~~g~~~-----~~~~~~~e~l~~~~~~l~~~~Gi~~ 163 (205)
|.+-.+..+++.+.+ +..|--+-|...+... .++.++.++++++.+.++ +.|+.+
T Consensus 7 dkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~-~~G~~~ 66 (68)
T cd04885 7 ERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLE-ALGYPY 66 (68)
T ss_pred CCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHH-HcCCCc
Confidence 344477888888887 6555445665543111 135678899999999999 789764
No 261
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=29.34 E-value=66 Score=25.83 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++++.+++.|+ .++|-|+|....++.++..
T Consensus 77 pG~~e~l~~l~~~g~-----~~~IvS~~~~~~i~~il~~ 110 (219)
T PRK09552 77 EGFHEFVQFVKENNI-----PFYVVSGGMDFFVYPLLQG 110 (219)
T ss_pred cCHHHHHHHHHHcCC-----eEEEECCCcHHHHHHHHHH
Confidence 457889999998888 8999999987766666553
No 262
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=29.11 E-value=1.4e+02 Score=21.42 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=28.9
Q ss_pred ceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEE
Q 028700 51 LNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 101 (205)
Q Consensus 51 ~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~l 101 (205)
+.+.+.|.=.|....+.++ +|++.++.+ ...|.+|.|+.--
T Consensus 45 i~~~~~L~YfNTSSsk~l~---------~i~~~Le~~-~~~g~~V~v~Wyy 85 (99)
T PF09345_consen 45 ITFNFKLSYFNTSSSKALM---------DIFDLLEDA-AQKGGKVTVNWYY 85 (99)
T ss_pred EEEEEEEEEEecHhHHHHH---------HHHHHHHHH-HhcCCcEEEEEEE
Confidence 4566667767777766654 678888877 3468888888763
No 263
>PRK08639 threonine dehydratase; Validated
Probab=29.09 E-value=4.3e+02 Score=23.77 Aligned_cols=85 Identities=2% Similarity=-0.051 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCC-CCCC-----CccCCcHHHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI-GSVS-----QFRTSSDDKVSS 150 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~-g~~~-----~~~~~~~e~l~~ 150 (205)
++.+-+-++..+...++.+.+++. || |.+-.+.++++.+...+..|-.+.|+.. +... .++.++++++++
T Consensus 319 ~~~~~~~~~~~l~~~~r~~~~~v~-ip---drPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~ 394 (420)
T PRK08639 319 IERMPEIKERSLIYEGLKHYFIVN-FP---QRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDG 394 (420)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEE-eC---CCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHH
Confidence 344444444444446777776665 44 3444566666633333334444455532 2111 135677899999
Q ss_pred HHHHHHhcCCceEEec
Q 028700 151 FQKILRGSYNIRTTVR 166 (205)
Q Consensus 151 ~~~~l~~~~Gi~~~i~ 166 (205)
+.+.|+ +.|+.+...
T Consensus 395 i~~~L~-~~Gy~~~~~ 409 (420)
T PRK08639 395 LIERME-AFGPSYIDI 409 (420)
T ss_pred HHHHHH-HCCCceEEC
Confidence 999999 799987653
No 264
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=28.97 E-value=3.8e+02 Score=23.18 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=36.4
Q ss_pred ceEEEeecCCCHHhhhh-hcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE-EeCCCCCCHHHHHHHHHHHh
Q 028700 51 LNLAVSLHAPVQDVRCQ-IMPAARAFPLEKLMNALKEYQKNSQQKIFIEYI-MLDGVNDEEQHAHQLGKLLE 120 (205)
Q Consensus 51 ~~l~~slk~~d~~~~~~-i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~-lIpGiNDs~e~i~~l~~~l~ 120 (205)
+.+.||+++.|+..--. -||+...+.+.+-+..++...+ +|.-+-+.++ +-|-+-+++++++..+..+.
T Consensus 235 ihlSfDvDg~Dp~~aPAtGTpv~gGLt~rE~myi~e~i~~-Tg~LiAldvvEvnP~l~~t~eea~~tv~~av 305 (318)
T KOG2965|consen 235 IHLSFDVDGFDPSYAPATGTPVVGGLTYREGMYICEEIAE-TGLLIALDVVEVNPLLGNTEEEAKTTVSLAV 305 (318)
T ss_pred eeEEEecCCcCccccCCCCCcCCCcccHHHHHHHHHHHHh-cCCeeEEEEEEeccccCCcHHHHHHHHHHHH
Confidence 46778888888754222 1344444444444444443333 4544444443 23555566666666666554
No 265
>PRK13561 putative diguanylate cyclase; Provisional
Probab=28.70 E-value=5e+02 Score=24.43 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
.+.+.+.+.++.+++.|+ +++++--|.. ..+.++....+| .+.+| ...=+.+. . -..++
T Consensus 531 ~~~~~~~~~~~~l~~~G~-----~i~lddfG~g~ssl~~L~~l~~l~~d-~lKiD-----~s~i~~i~--~----~~~~v 593 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGV-----RVALDDFGMGYAGLRQLQHMKSLPID-VLKID-----KMFVDGLP--E----DDSMV 593 (651)
T ss_pred cCHHHHHHHHHHHHHCCC-----EEEEECCCCCcccHHHHhhcCCCCCc-EEEEC-----HHHHhcCC--C----CHHHH
Confidence 356778888999998888 7999877643 234443333333 44454 11111111 1 12466
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
+.+...++..|.+|+ ..|+-+ +++ .++++++++
T Consensus 594 ~~i~~~a~~l~i~vi-----AegVE~-~~~----~~~l~~~g~ 626 (651)
T PRK13561 594 AAIIMLAQSLNLQVI-----AEGVET-EAQ----RDWLLKAGV 626 (651)
T ss_pred HHHHHHHHHCCCcEE-----EecCCC-HHH----HHHHHhcCC
Confidence 666666666676544 557744 443 446666764
No 266
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.60 E-value=3.8e+02 Score=23.03 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=44.0
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCceEEEeecCCCCCCCCccC--CcHHHHHHHHHHHH
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDE-------EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRT--SSDDKVSSFQKILR 156 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs-------~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~--~~~e~l~~~~~~l~ 156 (205)
+++...|..|-.++=-|.|-.|. --+.++..+|++..++..=-+-|-.. ...|+. .+.+.++++++
T Consensus 122 e~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~--HG~Y~~p~l~~~~l~~I~~--- 196 (283)
T PRK07998 122 DFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNV--HGLEDIPRIDIPLLKRIAE--- 196 (283)
T ss_pred HHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcccc--ccCCCCCCcCHHHHHHHHh---
Confidence 34555787887788888887653 11445667888877633212222221 223433 33455554444
Q ss_pred hcCCceEEeccccc
Q 028700 157 GSYNIRTTVRKQMG 170 (205)
Q Consensus 157 ~~~Gi~~~i~~~~g 170 (205)
..+++..+.|..|
T Consensus 197 -~~~vPLVlHGgSG 209 (283)
T PRK07998 197 -VSPVPLVIHGGSG 209 (283)
T ss_pred -hCCCCEEEeCCCC
Confidence 3567777877766
No 267
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=28.50 E-value=1.7e+02 Score=25.53 Aligned_cols=83 Identities=10% Similarity=0.151 Sum_probs=50.3
Q ss_pred CcEEEEcCCcH---HHHHHHhhcCCCceEE-EeecCCCHHhhh-------hhcCCC----------CCCCHHHHHHHHHH
Q 028700 28 KRITVSTVGIV---HAINKFHSDLPGLNLA-VSLHAPVQDVRC-------QIMPAA----------RAFPLEKLMNALKE 86 (205)
Q Consensus 28 ~~~~v~T~G~~---~~~~~l~~~~~~~~l~-~slk~~d~~~~~-------~i~~~~----------~~~~~~~i~~~l~~ 86 (205)
+-+-++|+=.. ..++++++..-..-++ +.+|..|.+-++ +++..+ ..++.+++.+.++
T Consensus 4 RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~- 82 (329)
T cd06568 4 RGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVA- 82 (329)
T ss_pred cceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHH-
Confidence 34556665422 3688888764223455 888888876443 344322 2367788888776
Q ss_pred HHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHH
Q 028700 87 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118 (205)
Q Consensus 87 ~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~ 118 (205)
|++..|. -|||-| |.+-|..++...
T Consensus 83 yA~~rgI------~vIPEi-D~PGH~~a~~~~ 107 (329)
T cd06568 83 YAAERHI------TVVPEI-DMPGHTNAALAA 107 (329)
T ss_pred HHHHcCC------EEEEec-CCcHHHHHHHHh
Confidence 5554553 268887 557888776654
No 268
>PLN02635 disproportionating enzyme
Probab=28.48 E-value=85 Score=29.59 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 103 DGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 103 pGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
-||-|--+.+.++++|++..+. .+.++|+||.+
T Consensus 43 ~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~ 76 (538)
T PLN02635 43 YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPG 76 (538)
T ss_pred CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3566665667789999999884 68999999985
No 269
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=28.41 E-value=1.4e+02 Score=27.34 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=26.7
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 96 FIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 96 ~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
.|| ||+|+|. +.++++|.++++.++.+++.+|
T Consensus 164 ~VN--ii~~~~~-~~D~~ei~~lL~~~Gl~v~~~~ 195 (454)
T cd01973 164 KLN--VFTGWVN-PGDVVELKHYLSEMDVEANILM 195 (454)
T ss_pred cEE--EECCCCC-hHHHHHHHHHHHHcCCCEEEee
Confidence 455 7789876 6789999999999998888885
No 270
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=28.01 E-value=2.2e+02 Score=20.05 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEE
Q 028700 79 KLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 128 (205)
Q Consensus 79 ~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~l 128 (205)
++.+.++.+......+|.+.+-.=++ +.-++++++++-++++..+|.+
T Consensus 5 ~~~~qL~~~f~~l~~pV~l~~f~~~~--~~~~e~~~ll~e~a~lSdkI~~ 52 (94)
T cd02974 5 NLKQQLKAYLERLENPVELVASLDDS--EKSAELLELLEEIASLSDKITL 52 (94)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCC--cchHHHHHHHHHHHHhCCceEE
Confidence 56666776666677889887665444 5556677777777777545554
No 271
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.97 E-value=3.9e+02 Score=22.94 Aligned_cols=122 Identities=12% Similarity=0.209 Sum_probs=65.1
Q ss_pred HHHHhhcCCCceEEEeecCCCH-HhhhhhcC--------CCCCCCHHHHHHH---HHHHHHhcCCcEEEEEEEeCCCCCC
Q 028700 41 INKFHSDLPGLNLAVSLHAPVQ-DVRCQIMP--------AARAFPLEKLMNA---LKEYQKNSQQKIFIEYIMLDGVNDE 108 (205)
Q Consensus 41 ~~~l~~~~~~~~l~~slk~~d~-~~~~~i~~--------~~~~~~~~~i~~~---l~~~~~~~~~~V~ir~~lIpGiNDs 108 (205)
++.+++.. .+-+.+-+||..+ +.-++-.. -...+++++-++. +.++++..|..|--++=-|.|.+|.
T Consensus 66 ~~~~a~~~-~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~ 144 (284)
T PRK12737 66 AEVAARKY-NIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDD 144 (284)
T ss_pred HHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCC
Confidence 44444433 2457777777642 32222211 1234455554333 2235555788888888889888774
Q ss_pred ---HH------HHHHHHHHHhcCCceEEEeecCCCCC-CCCcc---CCcHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 109 ---EQ------HAHQLGKLLETFQVVVNLIPFNPIGS-VSQFR---TSSDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 109 ---~e------~i~~l~~~l~~~~~~v~lip~~~~g~-~~~~~---~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
.+ +.++..+|++.-++ +.|-.- +|. ...|+ ..+.+.++++++. .+++..+.|..|
T Consensus 145 ~~~~~~~~~~T~peeA~~Fv~~Tgv--D~LAva-iGt~HG~y~~~p~Ld~~~L~~I~~~----~~iPLVlHGgSG 212 (284)
T PRK12737 145 LVVDEKDAMYTNPDAAAEFVERTGI--DSLAVA-IGTAHGLYKGEPKLDFERLAEIREK----VSIPLVLHGASG 212 (284)
T ss_pred cccccccccCCCHHHHHHHHHHhCC--CEEeec-cCccccccCCCCcCCHHHHHHHHHH----hCCCEEEeCCCC
Confidence 11 34667778876654 333322 221 12232 2456667666554 356677777666
No 272
>PLN02954 phosphoserine phosphatase
Probab=27.94 E-value=77 Score=25.21 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++++.+++.|+ .++|-|+|....++.++..
T Consensus 87 pg~~e~l~~l~~~g~-----~~~IvS~~~~~~i~~~l~~ 120 (224)
T PLN02954 87 PGIPELVKKLRARGT-----DVYLVSGGFRQMIAPVAAI 120 (224)
T ss_pred ccHHHHHHHHHHCCC-----EEEEECCCcHHHHHHHHHH
Confidence 568889999998887 7999999988766666554
No 273
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=27.69 E-value=5.4e+02 Score=24.60 Aligned_cols=94 Identities=10% Similarity=0.206 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..+....+| .+-+|-. .-+.+. .......+++.+.
T Consensus 676 ~~~~~~~~l~~l~~~G~-----~i~ld~fg~~~~~~~~l~~l~~d-~iKid~~-----~~~~~~---~~~~~~~~~~~~~ 741 (799)
T PRK11359 676 HDTEIFKRIQILRDMGV-----GLSVDDFGTGFSGLSRLVSLPVT-EIKIDKS-----FVDRCL---TEKRILALLEAIT 741 (799)
T ss_pred CHHHHHHHHHHHHHCCC-----EEEEECCCCchhhHHHHhhCCCC-EEEECHH-----HHhhcc---cChhHHHHHHHHH
Confidence 46778889999998888 8999976654 344445444333 4545522 111211 1112345677777
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
.+.+..+.+| +..||.+ ++ ..+++.++++
T Consensus 742 ~~~~~~~i~v-----ia~gVe~-~~----~~~~l~~~g~ 770 (799)
T PRK11359 742 SIGQSLNLTV-----VAEGVET-KE----QFEMLRKIHC 770 (799)
T ss_pred HHHHHCCCeE-----EEEcCCC-HH----HHHHHHhcCC
Confidence 6766666554 4557755 33 4456677764
No 274
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=27.58 E-value=3.4e+02 Score=22.87 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=16.1
Q ss_pred ccCCCHHHHHHHHHHhhcC
Q 028700 3 EPLNNYAALVEAVRIMTGL 21 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~ 21 (205)
||+..+.-+.++++.+++.
T Consensus 102 eP~i~p~~I~~~~~~L~~~ 120 (247)
T COG1212 102 EPFIEPEVIRAVAENLENS 120 (247)
T ss_pred CCCCCHHHHHHHHHHHHhC
Confidence 8999999888888888754
No 275
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=27.55 E-value=61 Score=25.51 Aligned_cols=34 Identities=6% Similarity=-0.062 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++|+.+++.|+ +++|-||+....++..+..
T Consensus 78 ~g~~~~L~~L~~~g~-----~~~i~Sn~~~~~~~~~l~~ 111 (205)
T TIGR01454 78 PGVPELLAELRADGV-----GTAIATGKSGPRARSLLEA 111 (205)
T ss_pred CCHHHHHHHHHHCCC-----eEEEEeCCchHHHHHHHHH
Confidence 568899999998887 8999999987766555543
No 276
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=27.44 E-value=98 Score=24.51 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++++.++++|+ +++|-|+|....++.++.
T Consensus 88 ~g~~~~l~~l~~~g~-----~~~IvS~~~~~~~~~~l~ 120 (219)
T TIGR00338 88 EGAEELVKTLKEKGY-----KVAVISGGFDLFAEHVKD 120 (219)
T ss_pred CCHHHHHHHHHHCCC-----EEEEECCCcHHHHHHHHH
Confidence 457889999998887 899999998766665554
No 277
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=27.25 E-value=1.4e+02 Score=22.84 Aligned_cols=117 Identities=10% Similarity=0.122 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc-CCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD-LPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~-~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
|.+.+...-+++++.+.. .++.+--.|... +.+.++. .++ .+.|.|=-+-..-++-+|. -+.-+.+++
T Consensus 8 Q~~Ai~~T~~rL~~~~~~---~~v~li~~sHe~-l~~~i~~~~v~-~~iFNLGYLPggDk~i~T~------~~TTl~Al~ 76 (140)
T PF06962_consen 8 QEEAIENTRERLEEAGLE---DRVTLILDSHEN-LDEYIPEGPVD-AAIFNLGYLPGGDKSITTK------PETTLKALE 76 (140)
T ss_dssp -HHHHHHHHHHHHHTT-G---SGEEEEES-GGG-GGGT--S--EE-EEEEEESB-CTS-TTSB--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC---CcEEEEECCHHH-HHhhCccCCcC-EEEEECCcCCCCCCCCCcC------cHHHHHHHH
Confidence 445555555666665441 156666655432 2232232 211 3446654433333333331 244566666
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCC
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPI 134 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~ 134 (205)
+.++.....=.+-+++-||=....|+.+++.+|++.+. ...+.+-|..+
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEES
T ss_pred HHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEcc
Confidence 55553332335566788999988999999999999996 35566666655
No 278
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=27.05 E-value=1.2e+02 Score=22.66 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHhcCCceEEEee
Q 028700 108 EEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~~v~lip 130 (205)
+.+.++++.+.+.+.++.|.++|
T Consensus 153 ~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 153 EEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp -HHHHHHHHHHHHTTT-EEEE--
T ss_pred CHHHHHHHHHHHHhCCCEEEEeC
Confidence 35566666666666666666655
No 279
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.81 E-value=4.1e+02 Score=22.80 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=15.5
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
+|+|-|+.. +.++..++++.+++.++
T Consensus 78 vpvi~Gv~~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 78 VPVFVGATTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHHhCC
Confidence 455666652 44556667777776663
No 280
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=26.49 E-value=1.8e+02 Score=22.42 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCc-HHHHHHHhhc
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGI-VHAINKFHSD 47 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~-~~~~~~l~~~ 47 (205)
++.+.++|+.|++.|+ .+++-||+. ...++.+...
T Consensus 45 ~pgv~e~L~~Lk~~g~-----~l~I~Sn~~~~~~~~~~~~~ 80 (170)
T TIGR01668 45 YPALRDWIEELKAAGR-----KLLIVSNNAGEQRAKAVEKA 80 (170)
T ss_pred ChhHHHHHHHHHHcCC-----EEEEEeCCchHHHHHHHHHH
Confidence 3568999999998887 899999987 3455555443
No 281
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=26.38 E-value=3.6e+02 Score=21.95 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCc
Q 028700 109 EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI 161 (205)
Q Consensus 109 ~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi 161 (205)
++.+.++.+.++..+.+| ++-||.+. .+|+.+++..+.+..+ ++|-
T Consensus 104 ~~~~~~l~~~~~~~~~kv-I~S~H~f~-----~tp~~~~l~~~~~~~~-~~ga 149 (228)
T TIGR01093 104 DDAVKELINIAKKGGTKI-IMSYHDFQ-----KTPSWEEIVERLEKAL-SYGA 149 (228)
T ss_pred HHHHHHHHHHHHHCCCEE-EEeccCCC-----CCCCHHHHHHHHHHHH-HhCC
Confidence 344556666555555555 66788764 3344444444444444 3543
No 282
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.37 E-value=2.2e+02 Score=24.39 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHHHhhcCCCceEE-EeecCCCHHhh-------hhhc---------CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEE
Q 028700 39 HAINKFHSDLPGLNLA-VSLHAPVQDVR-------CQIM---------PAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 101 (205)
Q Consensus 39 ~~~~~l~~~~~~~~l~-~slk~~d~~~~-------~~i~---------~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~l 101 (205)
..++++++..-..-++ +.+|..|.+-+ -+++ +....++.+++.+.++ |++..|. -|
T Consensus 16 ~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~-yA~~rgI------~v 88 (303)
T cd02742 16 ESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIE-YAAARGI------EV 88 (303)
T ss_pred HHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHH-HHHHcCC------EE
Confidence 3577777764223455 77888886554 2332 1223467777777776 5554553 26
Q ss_pred eCCCCCCHHHHHHHHHHHhc
Q 028700 102 LDGVNDEEQHAHQLGKLLET 121 (205)
Q Consensus 102 IpGiNDs~e~i~~l~~~l~~ 121 (205)
||.| |.+-|...+.....+
T Consensus 89 iPEi-D~PGH~~a~~~~~p~ 107 (303)
T cd02742 89 IPEI-DMPGHSTAFVKSFPK 107 (303)
T ss_pred EEec-cchHHHHHHHHhCHH
Confidence 7887 457788777665433
No 283
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=26.28 E-value=5.5e+02 Score=24.12 Aligned_cols=92 Identities=12% Similarity=0.172 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhh---cCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHS---DLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~---~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
.+.+.+.++++.+++.|+ +++++--|... .+..+.. ..+| .+.+|-..+ +.+. . . ..+.
T Consensus 536 ~~~~~~~~~~~~l~~~G~-----~ialDdfG~g~ss~~~L~~~~~l~~d-~iKid~~~~-----~~~~-~--~---~~~~ 598 (660)
T PRK11829 536 QDLDEALRLLRELQGLGL-----LIALDDFGIGYSSLRYLNHLKSLPIH-MIKLDKSFV-----KNLP-E--D---DAIA 598 (660)
T ss_pred cCHHHHHHHHHHHHhCCC-----EEEEECCCCchhhHHHHhccCCCCCc-EEEECHHHH-----hccc-C--C---HHHH
Confidence 356778889999998888 89998877642 3444433 4333 455552211 1111 0 1 2344
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
+.+....+..+.+| +..||- +++ -.++++++++
T Consensus 599 ~~i~~~a~~l~~~v-----iaegVE-t~~----~~~~l~~~g~ 631 (660)
T PRK11829 599 RIISCVSDVLKVRV-----MAEGVE-TEE----QRQWLLEHGI 631 (660)
T ss_pred HHHHHHHHHcCCeE-----EEecCC-CHH----HHHHHHHcCC
Confidence 55554555456444 355774 444 3456677764
No 284
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=26.08 E-value=1.8e+02 Score=24.62 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-----HHHHHhhcCCCceEEEeecCCCH
Q 028700 3 EPLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-----AINKFHSDLPGLNLAVSLHAPVQ 62 (205)
Q Consensus 3 EPllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-----~~~~l~~~~~~~~l~~slk~~d~ 62 (205)
+....++++.++++.+.+.|.. .+++ +|.|.. | .++.+.+..++ +-+++|.-|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~----~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd 203 (274)
T cd07938 143 EGEVPPERVAEVAERLLDLGCD----EISLGDTIGVATPAQVRRLLEAVLERFPD--EKLALHFHDT 203 (274)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----EEEECCCCCccCHHHHHHHHHHHHHHCCC--CeEEEEECCC
No 285
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=25.74 E-value=1.7e+02 Score=25.67 Aligned_cols=75 Identities=11% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCCceEE-EeecCCCHHhh-------hhhcCC-----CCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC
Q 028700 39 HAINKFHSDLPGLNLA-VSLHAPVQDVR-------CQIMPA-----ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV 105 (205)
Q Consensus 39 ~~~~~l~~~~~~~~l~-~slk~~d~~~~-------~~i~~~-----~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi 105 (205)
+.++++++..-..-++ +.+|..|.+-+ -+++.. ...++.+++.+.++ |++..|.. +||-|
T Consensus 18 ~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~-yA~~rgI~------vIPEI 90 (348)
T cd06562 18 DSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVE-YARLRGIR------VIPEI 90 (348)
T ss_pred HHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHH-HHHHcCCE------EEEec
Confidence 3677777764223455 77888776433 333322 12356666666665 44444422 45555
Q ss_pred CCCHHHHHHHHHHHhc
Q 028700 106 NDEEQHAHQLGKLLET 121 (205)
Q Consensus 106 NDs~e~i~~l~~~l~~ 121 (205)
|.+-|..++......
T Consensus 91 -D~PGH~~a~~~~~p~ 105 (348)
T cd06562 91 -DTPGHTGSWGQGYPE 105 (348)
T ss_pred -cCchhhHHHHHhChh
Confidence 556676666554433
No 286
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=25.40 E-value=4.1e+02 Score=24.05 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=42.5
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCC-CCCCCCccCCcHHHHHHHHHHHHhcCCceE
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-IGSVSQFRTSSDDKVSSFQKILRGSYNIRT 163 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~-~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~ 163 (205)
.++|+-.=.|.--+.+++++|++++..++.. ++-+|. -+ .-.+.-.+.+.++.+.+.+. ..|+..
T Consensus 82 ~tvRv~~P~G~~~tteqLR~LaDiaekYGsG--~~~~tgstq-dIiL~gv~~e~le~i~~eL~-~~G~dl 147 (402)
T TIGR02064 82 HTVRVAQPSGKFYSTDYLRQLCDVWEKYGSG--LTNFHGQTG-DIVFLGTQTPQLQEIFEELT-NLGTDL 147 (402)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHHhCCC--EEEEecccc-CEEEcCCCHHHHHHHHHHHh-hcccCC
Confidence 4666554345545778999999999988742 233352 22 22345567889999888887 577654
No 287
>PRK15063 isocitrate lyase; Provisional
Probab=25.11 E-value=5.4e+02 Score=23.62 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCHHhhhhhcCCCCC-------CCHHHHHHHHHHHHHhcCCc-EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeec
Q 028700 60 PVQDVRCQIMPAARA-------FPLEKLMNALKEYQKNSQQK-IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 131 (205)
Q Consensus 60 ~d~~~~~~i~~~~~~-------~~~~~i~~~l~~~~~~~~~~-V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~ 131 (205)
+|+.-|.-+.|.... ..++..++-...|.. |.. ||++. |. -+.++++++++-++.. .-.+++-|
T Consensus 240 ~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~--GAD~iw~Et----~~-~d~ee~~~fa~~v~~~-~P~~~lay 311 (428)
T PRK15063 240 VDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP--YADLIWCET----ST-PDLEEARRFAEAIHAK-FPGKLLAY 311 (428)
T ss_pred ccccccccccCCCccccccccccCHHHHHHHHHHHhc--CCCEEEeCC----CC-CCHHHHHHHHHhhccc-Cccceeec
Confidence 466666667663111 246666666666665 443 44443 23 2466666666655421 12456777
Q ss_pred CCCCCCCCc-cCCcHHHHHHHHHHHHhcCCceEEe
Q 028700 132 NPIGSVSQF-RTSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 132 ~~~g~~~~~-~~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+-. |...| ...++++++.|.+-+. ++|+...+
T Consensus 312 n~s-PsfnW~~~~~~~~~~~f~~eL~-~~Gy~~~~ 344 (428)
T PRK15063 312 NCS-PSFNWKKNLDDATIAKFQRELG-AMGYKFQF 344 (428)
T ss_pred CCC-CCcccccccCHHHHHHHHHHHH-HcCceEEE
Confidence 644 23334 2478999999999998 79987765
No 288
>PRK08508 biotin synthase; Provisional
Probab=24.89 E-value=3.5e+02 Score=22.85 Aligned_cols=131 Identities=13% Similarity=0.067 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH------HH----HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCC
Q 028700 5 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV------HA----INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARA 74 (205)
Q Consensus 5 llq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~------~~----~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~ 74 (205)
++.++.+++.++..++.|+ ..+++.|+|.. ++ ++.+.+.++++.+..+.--++++..+++-...-
T Consensus 39 ~~s~eeI~~~a~~a~~~g~----~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGl- 113 (279)
T PRK08508 39 RKDIEQIVQEAKMAKANGA----LGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGI- 113 (279)
T ss_pred CCCHHHHHHHHHHHHHCCC----CEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCC-
Confidence 4678999999999887655 37888777763 12 233333333223333444445555555421110
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCC--CCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVN--DEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQ 152 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN--Ds~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~ 152 (205)
+.+--+++ .+=-+.|.+. .+-++..+.++.+++.+..+. -..-+| . .-+.+++.+..
T Consensus 114 ---d~~~~~lE-----------t~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--sg~I~G----l-GEt~ed~~~~l 172 (279)
T PRK08508 114 ---FSYNHNLE-----------TSKEFFPKICTTHTWEERFQTCENAKEAGLGLC--SGGIFG----L-GESWEDRISFL 172 (279)
T ss_pred ---CEEccccc-----------chHHHhcCCCCCCCHHHHHHHHHHHHHcCCeec--ceeEEe----c-CCCHHHHHHHH
Confidence 00000111 1101234443 445666777777887763321 111122 1 12456666666
Q ss_pred HHHHhcCCce
Q 028700 153 KILRGSYNIR 162 (205)
Q Consensus 153 ~~l~~~~Gi~ 162 (205)
..++ +.+.+
T Consensus 173 ~~lr-~L~~~ 181 (279)
T PRK08508 173 KSLA-SLSPH 181 (279)
T ss_pred HHHH-cCCCC
Confidence 6667 57755
No 289
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=24.84 E-value=2.1e+02 Score=23.10 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=34.7
Q ss_pred eEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeec
Q 028700 52 NLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 131 (205)
Q Consensus 52 ~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~ 131 (205)
.+-+||++.+++..+. +++ . |..++.+ +-|+.+. .+++.+++..++.+=+++.
T Consensus 72 ~~plSIDT~~~~v~~~---------------aL~----~-g~~~ind---~~~~~~~----~~~~~l~a~~~~~vV~m~~ 124 (210)
T PF00809_consen 72 DVPLSIDTFNPEVAEA---------------ALK----A-GADIIND---ISGFEDD----PEMLPLAAEYGAPVVLMHS 124 (210)
T ss_dssp TSEEEEEESSHHHHHH---------------HHH----H-TSSEEEE---TTTTSSS----TTHHHHHHHHTSEEEEESE
T ss_pred CeEEEEECCCHHHHHH---------------HHH----c-CcceEEe---ccccccc----chhhhhhhcCCCEEEEEec
Confidence 4679999999776332 233 2 6676665 4555543 4577788888776656666
Q ss_pred C
Q 028700 132 N 132 (205)
Q Consensus 132 ~ 132 (205)
.
T Consensus 125 ~ 125 (210)
T PF00809_consen 125 D 125 (210)
T ss_dssp S
T ss_pred c
Confidence 5
No 290
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.73 E-value=3.5e+02 Score=22.02 Aligned_cols=112 Identities=9% Similarity=-0.023 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCC-ceEEEeecCC-CHHhhhhhcCCCCCCC-----HHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPG-LNLAVSLHAP-VQDVRCQIMPAARAFP-----LEK 79 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~-~~l~~slk~~-d~~~~~~i~~~~~~~~-----~~~ 79 (205)
..+.+..+.+.|.+.|+ .-..++++|-+..+.++++.....+ -.+.+-.-++ +.+.-++.......+. ..+
T Consensus 23 ~~~~a~~~~~al~~~Gi--~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~ 100 (213)
T PRK06552 23 SKEEALKISLAVIKGGI--KAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRE 100 (213)
T ss_pred CHHHHHHHHHHHHHCCC--CEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 35677888888887776 3345677777766677777654321 0355655553 5555444432221211 123
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
+++..+ +. .+|+|||... ++++.+.. +.+. .+.+.|-..+|
T Consensus 101 v~~~~~----~~------~i~~iPG~~T-~~E~~~A~----~~Gad~vklFPa~~~G 142 (213)
T PRK06552 101 TAKICN----LY------QIPYLPGCMT-VTEIVTAL----EAGSEIVKLFPGSTLG 142 (213)
T ss_pred HHHHHH----Hc------CCCEECCcCC-HHHHHHHH----HcCCCEEEECCcccCC
Confidence 333332 23 3678999975 44444332 2442 45555544443
No 291
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=24.68 E-value=93 Score=23.68 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 10 ALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 10 ~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
.+.++++.+++.|+ .+.|-|+|....++.++..
T Consensus 76 g~~~ll~~l~~~g~-----~~~i~S~~~~~~~~~~l~~ 108 (188)
T TIGR01489 76 GFKEFIAFIKEHGI-----DFIVISDGNDFFIDPVLEG 108 (188)
T ss_pred cHHHHHHHHHHcCC-----cEEEEeCCcHHHHHHHHHH
Confidence 47788888988777 7999999987666655543
No 292
>PRK12313 glycogen branching enzyme; Provisional
Probab=24.59 E-value=2.5e+02 Score=26.80 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCc-eEEEeecCCCC--CC-----CCccC-----CcHHHHHHHHHHHHhcCCceEEe
Q 028700 112 AHQLGKLLETFQV-VVNLIPFNPIG--SV-----SQFRT-----SSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 112 i~~l~~~l~~~~~-~v~lip~~~~g--~~-----~~~~~-----~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
++.++++++++++ .|.|+|..... .. ..|.. -+.++++++.+.+- ++||.|.+
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H-~~Gi~Vil 238 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALH-QNGIGVIL 238 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHH-HCCCEEEE
Confidence 4567799999995 79999985431 11 11211 24688888888888 79998865
No 293
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=24.57 E-value=5.7e+02 Score=23.73 Aligned_cols=95 Identities=7% Similarity=0.126 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 028700 10 ALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 89 (205)
Q Consensus 10 ~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 89 (205)
+..+.++.+|+. ++...+..-|......++.+.+.+.| -+.+.+..-.-..-+..+++.. ..+..+.+.. ++++
T Consensus 268 ~~~~~i~~ik~~---~~~~~v~aG~V~t~~~a~~~~~aGad-~I~vg~g~Gs~~~t~~~~~~g~-p~~~ai~~~~-~~~~ 341 (495)
T PTZ00314 268 YQIDMIKKLKSN---YPHVDIIAGNVVTADQAKNLIDAGAD-GLRIGMGSGSICITQEVCAVGR-PQASAVYHVA-RYAR 341 (495)
T ss_pred HHHHHHHHHHhh---CCCceEEECCcCCHHHHHHHHHcCCC-EEEECCcCCcccccchhccCCC-ChHHHHHHHH-HHHh
Confidence 455666666654 12223444344444566667676653 3434433221111111222221 1233333333 3444
Q ss_pred hcCCcEEEEEEEeC--CCCCCHHHHHHHH
Q 028700 90 NSQQKIFIEYIMLD--GVNDEEQHAHQLG 116 (205)
Q Consensus 90 ~~~~~V~ir~~lIp--GiNDs~e~i~~l~ 116 (205)
..+ +|+|+ |+....+-+++++
T Consensus 342 ~~~------v~vIadGGi~~~~di~kAla 364 (495)
T PTZ00314 342 ERG------VPCIADGGIKNSGDICKALA 364 (495)
T ss_pred hcC------CeEEecCCCCCHHHHHHHHH
Confidence 344 68898 9988765455553
No 294
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=24.48 E-value=1.2e+02 Score=23.77 Aligned_cols=26 Identities=8% Similarity=0.048 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVH 39 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~ 39 (205)
+.+.++++.+++.|+ +++|-||+...
T Consensus 87 ~g~~e~L~~l~~~g~-----~~~i~Sn~~~~ 112 (199)
T PRK09456 87 PEVIAIMHKLREQGH-----RVVVLSNTNRL 112 (199)
T ss_pred HHHHHHHHHHHhCCC-----cEEEEcCCchh
Confidence 568999999998887 89999998754
No 295
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=24.45 E-value=3.6e+02 Score=24.32 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=60.5
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHh
Q 028700 11 LVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKN 90 (205)
Q Consensus 11 l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~ 90 (205)
+.++++.+|++|- .+++-.||-|..+.+++++...+-+-+.+-.+-+|++.. ...++++ ++.+
T Consensus 132 ~~df~~kak~eGk---Ir~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~-------------~~~~~l~-~A~~ 194 (391)
T COG1453 132 VFDFLEKAKAEGK---IRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQ-------------AGTEGLK-YAAS 194 (391)
T ss_pred hHHHHHHHHhcCc---EEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchh-------------cccHHHH-HHHh
Confidence 6889999999863 358889999999989888886532234466666765432 1245566 4445
Q ss_pred cCCcEEEEEEEeCCC--CCCHHHHHHHHHHHh
Q 028700 91 SQQKIFIEYIMLDGV--NDEEQHAHQLGKLLE 120 (205)
Q Consensus 91 ~~~~V~ir~~lIpGi--NDs~e~i~~l~~~l~ 120 (205)
.+..|+|=-|+=.|= |.-++.++.|.+=+.
T Consensus 195 ~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~ 226 (391)
T COG1453 195 KGLGIFIMEPLDGGGLLYNVPEKLEELCRPAS 226 (391)
T ss_pred CCCcEEEEeeCCCCCcccCCCHHHHHHHHhcC
Confidence 788888888865552 222455565554443
No 296
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=24.20 E-value=86 Score=25.64 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.|+++|+ +++|-||+....++.+++
T Consensus 102 pg~~e~L~~L~~~g~-----~l~IvT~~~~~~~~~~l~ 134 (253)
T TIGR01422 102 PGVIEVIAYLRARGI-----KIGSTTGYTREMMDVVAP 134 (253)
T ss_pred CCHHHHHHHHHHCCC-----eEEEECCCcHHHHHHHHH
Confidence 457889999998887 899999988765555443
No 297
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=24.03 E-value=1.1e+02 Score=24.29 Aligned_cols=34 Identities=0% Similarity=0.017 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCC-cHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVG-IVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G-~~~~~~~l~~~ 47 (205)
+.+.++++.|+++|+ .++|-||. ....++.++..
T Consensus 48 pGv~elL~~Lk~~G~-----~l~I~Sn~~~~~~~~~~L~~ 82 (174)
T TIGR01685 48 KEVRDVLQTLKDAGT-----YLATASWNDVPEWAYEILGT 82 (174)
T ss_pred ccHHHHHHHHHHCCC-----EEEEEeCCCChHHHHHHHHh
Confidence 668999999999888 79998876 55555555443
No 298
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=23.98 E-value=1.2e+02 Score=22.32 Aligned_cols=29 Identities=7% Similarity=0.188 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN 42 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~ 42 (205)
+.+.++++.+++.|+ .+++-||+....+.
T Consensus 67 ~g~~e~l~~L~~~g~-----~~~i~T~~~~~~~~ 95 (154)
T TIGR01549 67 RGAADLLKRLKEAGI-----KLGIISNGSLRAQK 95 (154)
T ss_pred cCHHHHHHHHHHCcC-----eEEEEeCCchHHHH
Confidence 458899999988877 79999999865433
No 299
>PRK14706 glycogen branching enzyme; Provisional
Probab=23.91 E-value=2.8e+02 Score=26.76 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCc-eEEEeecCCCCCC-------CCccCC-----cHHHHHHHHHHHHhcCCceEEe
Q 028700 110 QHAHQLGKLLETFQV-VVNLIPFNPIGSV-------SQFRTS-----SDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 110 e~i~~l~~~l~~~~~-~v~lip~~~~g~~-------~~~~~~-----~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+-++.+.++++++++ .|+|+|....... ..|..| +.+++..+.+.+- +.||.|.+
T Consensus 168 ~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H-~~gi~Vil 235 (639)
T PRK14706 168 ELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLH-GLGIGVIL 235 (639)
T ss_pred HHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 345667789999995 7999998664211 112222 3578888888887 79998864
No 300
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.84 E-value=4.8e+02 Score=22.53 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHH
Q 028700 10 ALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQK 89 (205)
Q Consensus 10 ~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~ 89 (205)
.+.++++++++. .+.+.+.|+..- ...+.+.++.+.| -+++| - .+.+++.+.++ .++
T Consensus 185 ~i~~ai~~~r~~---~~~~kIeVEv~t-l~ea~eal~~gaD-iI~LD--n---------------m~~e~vk~av~-~~~ 241 (289)
T PRK07896 185 SVVAALRAVRAA---APDLPCEVEVDS-LEQLDEVLAEGAE-LVLLD--N---------------FPVWQTQEAVQ-RRD 241 (289)
T ss_pred cHHHHHHHHHHh---CCCCCEEEEcCC-HHHHHHHHHcCCC-EEEeC--C---------------CCHHHHHHHHH-HHh
Confidence 466788888875 344578888763 4466677777764 56666 2 34556666665 323
Q ss_pred hcCCcEEEEEEEeCCCCCCHHHHHHHHH
Q 028700 90 NSQQKIFIEYIMLDGVNDEEQHAHQLGK 117 (205)
Q Consensus 90 ~~~~~V~ir~~lIpGiNDs~e~i~~l~~ 117 (205)
....++.++ .=.|+|- +++.++++
T Consensus 242 ~~~~~v~ie--aSGGI~~--~ni~~yA~ 265 (289)
T PRK07896 242 ARAPTVLLE--SSGGLTL--DTAAAYAE 265 (289)
T ss_pred ccCCCEEEE--EECCCCH--HHHHHHHh
Confidence 234556555 4477864 35555443
No 301
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.83 E-value=4.3e+02 Score=21.97 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcC--Cc----H--------HHHHHHhhcCCCceEEEeecCCCHHh
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTV--GI----V--------HAINKFHSDLPGLNLAVSLHAPVQDV 64 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~--G~----~--------~~~~~l~~~~~~~~l~~slk~~d~~~ 64 (205)
++.+.+..+.+-+.|-.+ ..+..++. |. . +.++.+.+. ..+-+||++.+++.
T Consensus 23 ~~~~~~~a~~~~~~GAdi--IDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~---~~~piSIDT~~~~v 88 (258)
T cd00423 23 LDKALEHARRMVEEGADI--IDIGGESTRPGAEPVSVEEELERVIPVLRALAGE---PDVPISVDTFNAEV 88 (258)
T ss_pred HHHHHHHHHHHHHCCCCE--EEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhc---CCCeEEEeCCcHHH
Confidence 567777777776665422 23333232 11 0 123333322 13558999998776
No 302
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=23.73 E-value=5.3e+02 Score=23.48 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=37.1
Q ss_pred EEEeCC-CCCCHHHHHHHHHHHhcCC-----ceEEEe-ecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceE
Q 028700 99 YIMLDG-VNDEEQHAHQLGKLLETFQ-----VVVNLI-PFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRT 163 (205)
Q Consensus 99 ~~lIpG-iNDs~e~i~~l~~~l~~~~-----~~v~li-p~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~ 163 (205)
+.+|.+ +|-+++.+++..+.++... ..|=++ |+..+| .-+.+..+++.+.+. ..+++.
T Consensus 339 ~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg------~~~~~~h~~~~~~~~-~~~~d~ 403 (479)
T PRK14093 339 ATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELG------PRGPELHRGLAEAIR-ANAIDL 403 (479)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcC------cHHHHHHHHHHHHHH-HcCCCE
Confidence 567877 9999999999999998751 223222 111233 225566677777776 466543
No 303
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=23.70 E-value=98 Score=28.92 Aligned_cols=110 Identities=18% Similarity=0.269 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH--------HHHHHhhcC--C-CceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--------AINKFHSDL--P-GLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~--------~~~~l~~~~--~-~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
.+.+.+.|+.+.+. +.++-++|.|++... .+++..+.+ + +..+ +-+++..=. -..++|
T Consensus 127 ~~~L~e~I~~~~~~---y~P~~I~V~tTC~~evIGDDi~a~i~~~~~~~~~p~~~pV-i~v~TpgF~-Gs~~~G------ 195 (515)
T TIGR01286 127 LKNMVDGLQNCYAL---YKPKMIAVSTTCMAEVIGDDLNAFIGNAKKEGFIPDDFPV-PFAHTPSFV-GSHITG------ 195 (515)
T ss_pred HHHHHHHHHHHHHh---cCCCEEEEeCCcHHHHhhccHHHHHHHHHHhcCCCCCCce-EEeeCCCCc-ccHHHH------
Confidence 36778888877765 345568888887652 233333332 0 1111 223332210 011222
Q ss_pred HHHHHHHHHHHHHhc-------CCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 77 LEKLMNALKEYQKNS-------QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~-------~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
.+..++++-+++... ..+-.|| +|||++....++++|.+++..++.+++++|
T Consensus 196 yd~a~~ail~~l~~~~~~~~~~~~~~~VN--ii~g~~~~~gd~~eikrlL~~~Gi~~~~l~ 254 (515)
T TIGR01286 196 YDNMFKGILEYFTKGSMDDKVVGSNGKIN--IIPGFETYIGNFREIKRILSLMGVGYTLLS 254 (515)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCCeEE--EECCCCCCchhHHHHHHHHHHcCCCeEEcc
Confidence 233343333222211 1234566 589998767899999999999998888876
No 304
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.66 E-value=2.9e+02 Score=22.34 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
..++.|++.+-.+++ .+.+++.+.. +.|.+..+.+.+++++.
T Consensus 112 ~~i~~ile~~~~~l~-~ggrlV~nai-------tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 112 GNIEEILEAAWERLK-PGGRLVANAI-------TLETLAKALEALEQLGG 153 (187)
T ss_pred CCHHHHHHHHHHHcC-cCCeEEEEee-------cHHHHHHHHHHHHHcCC
Confidence 578889988877776 6779999988 45677888888888875
No 305
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.56 E-value=4.1e+02 Score=21.68 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCC-----CHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAF-----PLEKLM 81 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~-----~~~~i~ 81 (205)
..+...+.++.+.+.|+. ...++++|.+-...++++.+..++..+-..-...+++.++-+- ....+ -...++
T Consensus 25 ~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~-aGA~FivsP~~~~~vi 101 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE-AGAQFIVSPGLTPPLL 101 (212)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH-cCCCEEECCCCCHHHH
Confidence 467788888888876663 3456667766556677776655443344454444444444332 11111 112333
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCC
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPI 134 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~ 134 (205)
+... + ..++++||.-+ +.++.+ +.+.++ .|.+.|-..+
T Consensus 102 ~~a~----~------~~i~~iPG~~T-ptEi~~----a~~~Ga~~vKlFPa~~~ 140 (212)
T PRK05718 102 KAAQ----E------GPIPLIPGVST-PSELML----GMELGLRTFKFFPAEAS 140 (212)
T ss_pred HHHH----H------cCCCEeCCCCC-HHHHHH----HHHCCCCEEEEccchhc
Confidence 3332 1 45778999865 433443 233443 3555554433
No 306
>PRK08185 hypothetical protein; Provisional
Probab=23.32 E-value=4.8e+02 Score=22.39 Aligned_cols=122 Identities=9% Similarity=0.063 Sum_probs=59.6
Q ss_pred HHHHhhcCCCceEEEeecCCC-HHhhhhhcC-C-------CCCCCHHHHHHHHHH---HHHhcCCcEEEEEEEeCCCCCC
Q 028700 41 INKFHSDLPGLNLAVSLHAPV-QDVRCQIMP-A-------ARAFPLEKLMNALKE---YQKNSQQKIFIEYIMLDGVNDE 108 (205)
Q Consensus 41 ~~~l~~~~~~~~l~~slk~~d-~~~~~~i~~-~-------~~~~~~~~i~~~l~~---~~~~~~~~V~ir~~lIpGiNDs 108 (205)
++.+.+.. .+-+.+-|||.. .+.-++... . ...+++++-++.-++ +.+..|..|-.++=.|+|..|.
T Consensus 60 ~~~~a~~~-~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~ 138 (283)
T PRK08185 60 VRERAKRS-PVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTS 138 (283)
T ss_pred HHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccc
Confidence 44444433 245667777763 333222211 1 233455555544333 3355788888887778774432
Q ss_pred H-----H----HHHHHHHHHhcCCceEEEeec-----CCCCCCCCc-cCCcHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 109 E-----Q----HAHQLGKLLETFQVVVNLIPF-----NPIGSVSQF-RTSSDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 109 ~-----e----~i~~l~~~l~~~~~~v~lip~-----~~~g~~~~~-~~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
. + +.++..+|.+..++ +.|-. |.+= .... +..+.+.++++++ ..++++...|..|
T Consensus 139 ~~~~~~~~~~t~peea~~f~~~Tgv--D~LAvaiGt~HG~y-~~~~kp~L~~e~l~~I~~----~~~iPLVlHGgsg 208 (283)
T PRK08185 139 IEGGVSEIIYTDPEQAEDFVSRTGV--DTLAVAIGTAHGIY-PKDKKPELQMDLLKEINE----RVDIPLVLHGGSA 208 (283)
T ss_pred cccccccccCCCHHHHHHHHHhhCC--CEEEeccCcccCCc-CCCCCCCcCHHHHHHHHH----hhCCCEEEECCCC
Confidence 0 1 44556777776553 34443 3321 1100 1234455544443 3466666655544
No 307
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=23.28 E-value=1.3e+02 Score=25.50 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.+++.|+ +++|-||+....+..+++
T Consensus 147 pGv~elL~~L~~~g~-----~l~IvTn~~~~~~~~~l~ 179 (286)
T PLN02779 147 PGVLRLMDEALAAGI-----KVAVCSTSNEKAVSKIVN 179 (286)
T ss_pred hhHHHHHHHHHHCCC-----eEEEEeCCCHHHHHHHHH
Confidence 568899999998888 899999998765555544
No 308
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.21 E-value=3.1e+02 Score=22.69 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=5.9
Q ss_pred HHHHHHHhhcCCC
Q 028700 11 LVEAVRIMTGLPF 23 (205)
Q Consensus 11 l~~~l~~lk~~~i 23 (205)
+.+.++.+++.|+
T Consensus 12 l~~~l~~a~~~G~ 24 (279)
T cd00019 12 LENALKRAKEIGF 24 (279)
T ss_pred HHHHHHHHHHcCC
Confidence 3444444444443
No 309
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=23.15 E-value=98 Score=25.44 Aligned_cols=34 Identities=9% Similarity=-0.047 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++|+.++++|+ +++|-||+....++..++.
T Consensus 111 pgv~e~L~~L~~~g~-----~l~I~Tn~~~~~~~~~l~~ 144 (248)
T PLN02770 111 NGLYKLKKWIEDRGL-----KRAAVTNAPRENAELMISL 144 (248)
T ss_pred ccHHHHHHHHHHcCC-----eEEEEeCCCHHHHHHHHHH
Confidence 458899999998887 8999999987666555543
No 310
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=23.04 E-value=3e+02 Score=24.20 Aligned_cols=66 Identities=20% Similarity=0.191 Sum_probs=45.1
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCC--c-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEe-cccccccccc
Q 028700 101 MLDGVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV-RKQMGQDISG 175 (205)
Q Consensus 101 lIpGiNDs~e~i~~l~~~l~~~~--~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i-~~~~g~d~~~ 175 (205)
.|-|+||.. .+.+-+++++.+- . +| -+.|+|- ++-+...++++++.++ +.|+.+.- .-+..+|+..
T Consensus 135 NvTGvsD~~-~v~q~i~lik~~~Pnak~I-gv~Y~p~------E~ns~~l~eelk~~A~-~~Gl~vve~~v~~~ndi~~ 204 (322)
T COG2984 135 NVTGVSDLL-PVAQQIELIKALLPNAKSI-GVLYNPG------EANSVSLVEELKKEAR-KAGLEVVEAAVTSVNDIPR 204 (322)
T ss_pred ceeecCCcc-hHHHHHHHHHHhCCCCeeE-EEEeCCC------CcccHHHHHHHHHHHH-HCCCEEEEEecCcccccHH
Confidence 567999975 5778888888762 2 33 2678774 2346778889999999 79998753 3345555543
No 311
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=23.00 E-value=87 Score=25.01 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++++.++++|+ +++|-||+....++.++.
T Consensus 95 ~g~~~~l~~l~~~g~-----~~~i~S~~~~~~~~~~l~ 127 (222)
T PRK10826 95 PGVREALALCKAQGL-----KIGLASASPLHMLEAVLT 127 (222)
T ss_pred CCHHHHHHHHHHCCC-----eEEEEeCCcHHHHHHHHH
Confidence 458899999998887 899999987765555544
No 312
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=22.95 E-value=3.1e+02 Score=22.58 Aligned_cols=62 Identities=3% Similarity=-0.036 Sum_probs=35.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEec
Q 028700 99 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 99 ~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i~ 166 (205)
.+.+.|+.++..+..++++.+.+.++. -+=+|.......+..|+.+.+.++++. ..+++...
T Consensus 135 ~v~~~Gw~~~~~~~~~~~~~l~~~G~~--~iiv~~~~~~g~~~G~d~~~i~~i~~~----~~ipvias 196 (241)
T PRK14024 135 TLAARGWTRDGGDLWEVLERLDSAGCS--RYVVTDVTKDGTLTGPNLELLREVCAR----TDAPVVAS 196 (241)
T ss_pred EeccCCeeecCccHHHHHHHHHhcCCC--EEEEEeecCCCCccCCCHHHHHHHHhh----CCCCEEEe
Confidence 445678877666667777777777642 233444432334556676666555443 45666543
No 313
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=22.94 E-value=98 Score=25.17 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc-CCCceEEEeecCCCHHhhhhhcCCCCCCCH--HHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD-LPGLNLAVSLHAPVQDVRCQIMPAARAFPL--EKLMNALK 85 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~-~~~~~l~~slk~~d~~~~~~i~~~~~~~~~--~~i~~~l~ 85 (205)
+...++++.+++.|. .++|-|.|+.-.++.+.+. +.| -.++......+ - .++|..-.... +.=.+.++
T Consensus 80 ~ga~elv~~lk~~G~-----~v~iiSgg~~~lv~~ia~~lg~d--~~~an~l~~~d-G-~ltG~v~g~~~~~~~K~~~l~ 150 (212)
T COG0560 80 PGAEELVAALKAAGA-----KVVIISGGFTFLVEPIAERLGID--YVVANELEIDD-G-KLTGRVVGPICDGEGKAKALR 150 (212)
T ss_pred ccHHHHHHHHHHCCC-----EEEEEcCChHHHHHHHHHHhCCc--hheeeEEEEeC-C-EEeceeeeeecCcchHHHHHH
Confidence 347889999999887 8999999987666666653 322 22332222222 1 45552211111 11223344
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCC
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDE 108 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs 108 (205)
++.+..|.+..--+.+=.|.||-
T Consensus 151 ~~~~~~g~~~~~~~a~gDs~nDl 173 (212)
T COG0560 151 ELAAELGIPLEETVAYGDSANDL 173 (212)
T ss_pred HHHHHcCCCHHHeEEEcCchhhH
Confidence 45555666654455555666663
No 314
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=22.93 E-value=1.3e+02 Score=25.84 Aligned_cols=33 Identities=6% Similarity=0.096 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++++.|++.|+ .++|=|+|+...++.++.
T Consensus 124 pG~~efl~~L~~~GI-----pv~IvS~G~~~~Ie~vL~ 156 (277)
T TIGR01544 124 DGYENFFDKLQQHSI-----PVFIFSAGIGNVLEEVLR 156 (277)
T ss_pred cCHHHHHHHHHHCCC-----cEEEEeCCcHHHHHHHHH
Confidence 457889999998888 899999999887776666
No 315
>PRK14705 glycogen branching enzyme; Provisional
Probab=22.73 E-value=3e+02 Score=28.86 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCc-eEEEeecCCC--CCC-----CCccC-----CcHHHHHHHHHHHHhcCCceEEe
Q 028700 110 QHAHQLGKLLETFQV-VVNLIPFNPI--GSV-----SQFRT-----SSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 110 e~i~~l~~~l~~~~~-~v~lip~~~~--g~~-----~~~~~-----~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+-+++++++++++++ .|+|+|.+.. +.. ..|.. -+.++++.|.+.+- +.||.|.+
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H-~~GI~VIL 833 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLH-QAGIGVLL 833 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 345678899999995 8999999543 211 11211 24688888888887 79998864
No 316
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=22.63 E-value=4.7e+02 Score=23.99 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=41.0
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCc-----------c-CCcHHHHHHHHHHHHhcCCce
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQF-----------R-TSSDDKVSSFQKILRGSYNIR 162 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~-----------~-~~~~e~l~~~~~~l~~~~Gi~ 162 (205)
-.|| ||+++|- ..++.+|.++++.++.+++... + | ...+ . .........+.+++++++|++
T Consensus 208 ~~VN--iiG~~~~-~gd~~eik~lL~~~Gi~v~~~~--s-g-~~t~~~i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP 280 (466)
T TIGR01282 208 YDVA--IIGDYNI-GGDAWESRILLEEIGLRVVAQW--S-G-DGTLNEMENAPKAKLNLIHCYRSMNYISRHMEEKYGIP 280 (466)
T ss_pred CeEE--EEecCCC-cccHHHHHHHHHHcCCeEEEEE--C-C-CCCHHHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCc
Confidence 3555 6788985 3567889999999987665311 1 2 1111 0 122234456677777578988
Q ss_pred EEeccccc
Q 028700 163 TTVRKQMG 170 (205)
Q Consensus 163 ~~i~~~~g 170 (205)
.......|
T Consensus 281 ~~~~~~~G 288 (466)
T TIGR01282 281 WMEYNFFG 288 (466)
T ss_pred eEeCCCCC
Confidence 75544555
No 317
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.61 E-value=5e+02 Score=22.31 Aligned_cols=122 Identities=15% Similarity=0.227 Sum_probs=63.0
Q ss_pred HHHHhhcCCCceEEEeecCC-CHHhhhhhcC--------CCCCCCHHHHHHH---HHHHHHhcCCcEEEEEEEeCCCCCC
Q 028700 41 INKFHSDLPGLNLAVSLHAP-VQDVRCQIMP--------AARAFPLEKLMNA---LKEYQKNSQQKIFIEYIMLDGVNDE 108 (205)
Q Consensus 41 ~~~l~~~~~~~~l~~slk~~-d~~~~~~i~~--------~~~~~~~~~i~~~---l~~~~~~~~~~V~ir~~lIpGiNDs 108 (205)
++.+.+.. .+-+.+.+||. +.+.-++-.. -...+++++-++. +.+++...|..|--++=-|.|-+|.
T Consensus 66 ~~~~A~~~-~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~ 144 (284)
T PRK09195 66 VSAAAKQY-HHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDD 144 (284)
T ss_pred HHHHHHHC-CCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccC
Confidence 44444433 24466677665 3333222211 1223455543332 2235555788888888888877764
Q ss_pred ---H------HHHHHHHHHHhcCCceEEEeecCCCCC-CCCcc---CCcHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 109 ---E------QHAHQLGKLLETFQVVVNLIPFNPIGS-VSQFR---TSSDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 109 ---~------e~i~~l~~~l~~~~~~v~lip~~~~g~-~~~~~---~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
. -+.++..+|++.-++ +.|-.- +|. ...|+ ..+.+.++++++. .+++..+.|..|
T Consensus 145 ~~~~~~~~~~T~peea~~Fv~~Tgv--D~LAva-iGt~HG~y~~~p~Ld~~~L~~I~~~----~~vPLVLHGgSG 212 (284)
T PRK09195 145 LQVDEADALYTDPAQAREFVEATGI--DSLAVA-IGTAHGMYKGEPKLDFDRLENIRQW----VNIPLVLHGASG 212 (284)
T ss_pred cccccccccCCCHHHHHHHHHHHCc--CEEeec-cCccccccCCCCcCCHHHHHHHHHH----hCCCeEEecCCC
Confidence 1 144567777776653 333321 221 12232 3456666666554 356777777666
No 318
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.50 E-value=6.3e+02 Score=23.43 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHH--------HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHA--------INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~--------~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
.+.+.+.++.+.++ +.+.-+.|.|++.... ++++...+.+ -+.++........+. ..+.
T Consensus 70 ~~~L~~aI~~~~~~---~~P~~I~V~sTC~selIGdDi~~~~~~~~~~~~p-vi~v~t~gf~g~~~~---------g~~~ 136 (511)
T TIGR01278 70 QTRLVDTVRRVDDR---FKPDLIVVTPSCTSSLLQEDLGNLAAAAGLDKSK-VIVADVNAYRRKENQ---------AADR 136 (511)
T ss_pred HHHHHHHHHHHHHh---cCCCEEEEeCCChHHHhccCHHHHHHHhccCCCc-EEEecCCCcccchhH---------HHHH
Confidence 36777888877654 2344677877765431 2333222211 233555555433221 1223
Q ss_pred HHHH-HHHHHHhc------CCcEEEEEEEeCCCCC---CHHHHHHHHHHHhcCCceEEEe-ecCCC-CC-----CCCcc-
Q 028700 80 LMNA-LKEYQKNS------QQKIFIEYIMLDGVND---EEQHAHQLGKLLETFQVVVNLI-PFNPI-GS-----VSQFR- 141 (205)
Q Consensus 80 i~~~-l~~~~~~~------~~~V~ir~~lIpGiND---s~e~i~~l~~~l~~~~~~v~li-p~~~~-g~-----~~~~~- 141 (205)
.++. ++.+.... ..+-.|| +|...|. +..++.+|.++++.++.+++.+ |.... .. ...+.
T Consensus 137 al~~lv~~~~~~~~~~~~~~~~~~VN--IiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NI 214 (511)
T TIGR01278 137 TLTQLVRRFAKEQPKPGRTTEKPSVN--LLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNI 214 (511)
T ss_pred HHHHHHHHHHhccccccccCCCCcEE--EEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEE
Confidence 3332 22232211 1233455 5544432 3678899999999999888765 64321 00 01111
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 142 TSSDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 142 ~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
.+..+....+.+.+++++|++.....+.|
T Consensus 215 v~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 215 CPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred EechHHHHHHHHHHHHHhCCCcccccccC
Confidence 23445555667777657888765445555
No 319
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=22.39 E-value=1.4e+02 Score=23.16 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++++.++++|+ +++|-|++..+.++.++..
T Consensus 90 ~~~~~~l~~l~~~g~-----~v~ivS~s~~~~v~~~~~~ 123 (202)
T TIGR01490 90 PEARDLIRWHKAEGH-----TIVLVSASLTILVKPLARI 123 (202)
T ss_pred HHHHHHHHHHHHCCC-----EEEEEeCCcHHHHHHHHHH
Confidence 568889999988877 8999999987777666653
No 320
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.35 E-value=5e+02 Score=22.24 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=45.1
Q ss_pred cEEEEcCCcHH-----HHHHHhhcCCCceEEEeecCCCHH--hhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEE
Q 028700 29 RITVSTVGIVH-----AINKFHSDLPGLNLAVSLHAPVQD--VRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIM 101 (205)
Q Consensus 29 ~~~v~T~G~~~-----~~~~l~~~~~~~~l~~slk~~d~~--~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~l 101 (205)
.+.+.=.|..+ .++.+.+++-| - ++|+..-|. ...+..|..-....+.+.+.++...+..+.+|.+.+-
T Consensus 64 p~i~ql~g~~~~~~~~aa~~~~~~G~d-~--IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir- 139 (319)
T TIGR00737 64 PISVQLFGSDPDTMAEAAKINEELGAD-I--IDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR- 139 (319)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhCCCC-E--EEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE-
Confidence 56677677654 24455455432 2 455544442 2223333211112233444444333445667777654
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCc
Q 028700 102 LDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 102 IpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
.|+.++..+..++++.+...++
T Consensus 140 -~g~~~~~~~~~~~a~~l~~~G~ 161 (319)
T TIGR00737 140 -IGWDDAHINAVEAARIAEDAGA 161 (319)
T ss_pred -cccCCCcchHHHHHHHHHHhCC
Confidence 2665554456677777777663
No 321
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.28 E-value=4.7e+02 Score=21.93 Aligned_cols=120 Identities=9% Similarity=0.059 Sum_probs=58.1
Q ss_pred HHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEe-CCCCCCHHHHHHHHHHH
Q 028700 41 INKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIML-DGVNDEEQHAHQLGKLL 119 (205)
Q Consensus 41 ~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lI-pGiNDs~e~i~~l~~~l 119 (205)
++...+.+.+ .+.+.+.+.+.-. ++..+.+....++++.+.++ +++..|..|.+...-+ .+.=.+++.+.++++-+
T Consensus 84 ~~~a~~~g~~-~i~i~~~~sd~~~-~~~~~~~~~~~~~~~~~~i~-~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~ 160 (273)
T cd07941 84 LQALLEAGTP-VVTIFGKSWDLHV-TEALGTTLEENLAMIRDSVA-YLKSHGREVIFDAEHFFDGYKANPEYALATLKAA 160 (273)
T ss_pred HHHHHhCCCC-EEEEEEcCCHHHH-HHHcCCCHHHHHHHHHHHHH-HHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHH
Confidence 4444444432 3444444333222 22233333334555566665 4455777776653322 33223466666777766
Q ss_pred hcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCC---ceEEeccccc
Q 028700 120 ETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYN---IRTTVRKQMG 170 (205)
Q Consensus 120 ~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~G---i~~~i~~~~g 170 (205)
...++. -+-+-.. +....++++.++.+.+++..+ +.++..+.+|
T Consensus 161 ~~~g~~--~i~l~DT-----~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~G 207 (273)
T cd07941 161 AEAGAD--WLVLCDT-----NGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSG 207 (273)
T ss_pred HhCCCC--EEEEecC-----CCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCC
Confidence 666642 2222221 233566777777777653334 3444444444
No 322
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.25 E-value=4.2e+02 Score=21.28 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI 68 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i 68 (205)
+.+.+.++.+++.|+ ..+.|..-|....+++..+.. ++.+-+.+...|+..-+-+
T Consensus 2 ~~~~~~l~~l~~~g~----dgi~v~~~g~~~~~k~~~~~~-~i~~~~~~nv~N~~s~~~~ 56 (233)
T PF01136_consen 2 EELEKYLDKLKELGV----DGILVSNPGLLELLKELGPDL-KIIADYSLNVFNSESARFL 56 (233)
T ss_pred hHHHHHHHHHHhCCC----CEEEEcCHHHHHHHHHhCCCC-cEEEecCccCCCHHHHHHH
Confidence 567788888887665 368888888777777775543 2344455777776665544
No 323
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=22.18 E-value=92 Score=24.68 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.++++|+ +++|-||+....++..++
T Consensus 90 ~G~~~~L~~L~~~g~-----~~~ivT~~~~~~~~~~l~ 122 (220)
T TIGR03351 90 PGAEEAFRSLRSSGI-----KVALTTGFDRDTAERLLE 122 (220)
T ss_pred CCHHHHHHHHHHCCC-----EEEEEeCCchHHHHHHHH
Confidence 347899999998887 799999998765544444
No 324
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=22.08 E-value=94 Score=24.55 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAIN 42 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~ 42 (205)
+.+.++|+.|++.|+ .++|=||+......
T Consensus 97 ~g~~~~L~~L~~~g~-----~~~i~Tn~~~~~~~ 125 (221)
T TIGR02253 97 PGVRDTLMELRESGY-----RLGIITDGLPVKQW 125 (221)
T ss_pred CCHHHHHHHHHHCCC-----EEEEEeCCchHHHH
Confidence 458899999998877 79999998765433
No 325
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=21.91 E-value=2.9e+02 Score=26.30 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=43.8
Q ss_pred EEEEEEEeCCCCC--CHHH-HHHHHHHHhcCCc-eEEEeecCCCCCC-------CCccC-----CcHHHHHHHHHHHHhc
Q 028700 95 IFIEYIMLDGVND--EEQH-AHQLGKLLETFQV-VVNLIPFNPIGSV-------SQFRT-----SSDDKVSSFQKILRGS 158 (205)
Q Consensus 95 V~ir~~lIpGiND--s~e~-i~~l~~~l~~~~~-~v~lip~~~~g~~-------~~~~~-----~~~e~l~~~~~~l~~~ 158 (205)
++|=-+-+..+++ +-.. ++.++++++++++ .|.|+|....... ..|.. -+.++++++.+.+- +
T Consensus 139 ~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H-~ 217 (613)
T TIGR01515 139 VSIYELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACH-Q 217 (613)
T ss_pred ceEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHH-H
Confidence 3333344666665 2233 4556789999995 7889898654211 11111 24678888888887 7
Q ss_pred CCceEEe
Q 028700 159 YNIRTTV 165 (205)
Q Consensus 159 ~Gi~~~i 165 (205)
.|+.|.+
T Consensus 218 ~Gi~Vil 224 (613)
T TIGR01515 218 AGIGVIL 224 (613)
T ss_pred CCCEEEE
Confidence 9998865
No 326
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=21.87 E-value=1.4e+02 Score=24.21 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.++++|+ .++|-||+....++..+.
T Consensus 96 ~g~~e~L~~Lk~~g~-----~~~i~Tn~~~~~~~~~l~ 128 (224)
T PRK14988 96 EDTVPFLEALKASGK-----RRILLTNAHPHNLAVKLE 128 (224)
T ss_pred CCHHHHHHHHHhCCC-----eEEEEeCcCHHHHHHHHH
Confidence 458899999999887 799999987665444333
No 327
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=21.83 E-value=1.2e+02 Score=20.97 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++++.+++.|+ .+.+-|++..+.++..+..
T Consensus 27 ~~~~~~l~~l~~~g~-----~i~ivS~~~~~~~~~~~~~ 60 (139)
T cd01427 27 PGVKEALKELKEKGI-----KLALATNKSRREVLELLEE 60 (139)
T ss_pred cCHHHHHHHHHHCCC-----eEEEEeCchHHHHHHHHHH
Confidence 458899999998876 6888888877666555543
No 328
>PRK13663 hypothetical protein; Provisional
Probab=21.67 E-value=5.1e+02 Score=23.96 Aligned_cols=81 Identities=7% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC-HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHH
Q 028700 40 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP-LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118 (205)
Q Consensus 40 ~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~-~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~ 118 (205)
+++-|....+.+.+.+-|.+-|=|+.+- - .+-... -+++++.+..|.. ..+.++-++|.-+++.+ .+..+.+-
T Consensus 55 Ki~mL~~lkD~~EIvi~I~A~DIe~nKi-R-gDlGItYd~dVLRLiD~fr~---~gl~V~sVVITqy~~qp-~a~~F~~r 128 (493)
T PRK13663 55 KIKLLQELKDQVEIVIAINANDIERNKI-R-GDLGITYDQDVLRLIDDFRE---LGLYVGSVVITQYDGQP-AADAFRNR 128 (493)
T ss_pred HHHHHHHhhccceEEEEEEhhhhhhccc-c-ccCCCchhHHHHHHHHHHHh---cCceeeeEEEEecCCCh-HHHHHHHH
Confidence 4444444333356778888877665332 1 111111 2467888876643 45899999999997765 46778888
Q ss_pred HhcCCceE
Q 028700 119 LETFQVVV 126 (205)
Q Consensus 119 l~~~~~~v 126 (205)
+..++.+|
T Consensus 129 Le~~GIkv 136 (493)
T PRK13663 129 LERLGIKV 136 (493)
T ss_pred HHHCCCce
Confidence 88777543
No 329
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.66 E-value=4.7e+02 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=14.9
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
++|+|-|+.. +.++..++++.+++.++
T Consensus 66 ~~~vi~gv~~~~~~~~i~~a~~a~~~Ga 93 (281)
T cd00408 66 RVPVIAGVGANSTREAIELARHAEEAGA 93 (281)
T ss_pred CCeEEEecCCccHHHHHHHHHHHHHcCC
Confidence 3455556554 34455566666666653
No 330
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=21.51 E-value=1.8e+02 Score=24.85 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCceEEEeecCCCCCCC-----------------CccCC-cHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 111 HAHQLGKLLETFQVVVNLIPFNPIGSVS-----------------QFRTS-SDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 111 ~i~~l~~~l~~~~~~v~lip~~~~g~~~-----------------~~~~~-~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
+-+++++++.+.++.|+++|-.+--+.. .+..| ...+-..+++.++ ++|+.+.-+-..+
T Consensus 39 Qh~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~-~lgi~i~~~~~~~ 115 (267)
T COG1834 39 QHEALVEALEKNGVEVHLLPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLE-SLGIPIYPRVEAG 115 (267)
T ss_pred HHHHHHHHHHHCCCEEEEcCcccCCCcceEeccceeEecccEEEeccCChhhccCHHHHHHHHH-HcCCcccccccCC
Confidence 3456666666666667666632210111 11222 2345566788899 7999865443333
No 331
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=21.49 E-value=1.9e+02 Score=21.26 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHH---HHHHHHHHhcCCceE
Q 028700 92 QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKV---SSFQKILRGSYNIRT 163 (205)
Q Consensus 92 ~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l---~~~~~~l~~~~Gi~~ 163 (205)
+.-+-.+.+-..++|...-+.+++.+.+-..++ .+=+.=-||-| -..||.++. +++++.++ ..|+.+
T Consensus 33 ~~li~~~~v~~G~~~~~~v~~R~I~~~al~~~A~~vIl~HNHPsG----~~~PS~~D~~~T~~L~~~~~-~l~I~l 103 (123)
T PF04002_consen 33 NRLIGDEVVSEGTIDSAPVDPREIFRRALRLNASSVILAHNHPSG----DPEPSDADIALTRRLKKAAR-LLGIEL 103 (123)
T ss_dssp SBEEEEEEEEESTT-GGGCSHHHHHHHHHHTT-SEEEEEEE-TTS------S--HHHHHHHHHHHHHHH-HHT-EE
T ss_pred CcEEEEEEecccCCCcccccHHHHHHHHHhhCCceEEEEEEcCCC----CCCCCHhHHHHHHHHHHHHH-HcCCee
Confidence 344556666678888877777888887776663 55455566765 245676666 56777777 677765
No 332
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=21.43 E-value=3e+02 Score=22.05 Aligned_cols=143 Identities=8% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEcCCcHH--HHHHHhhcCCCceEEEeecCCCHHhhhh-hcCCC-CCCCHHHHHHHHHHH
Q 028700 12 VEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQ-IMPAA-RAFPLEKLMNALKEY 87 (205)
Q Consensus 12 ~~~l~~lk~~~i~~~~~~~~v~T~G~~~--~~~~l~~~~~~~~l~~slk~~d~~~~~~-i~~~~-~~~~~~~i~~~l~~~ 87 (205)
.++++.|+++++ .+.|+..+... .+-.+... ...+-+.-+..-...+.. ..... ....+++.+..+..+
T Consensus 2 ~~l~~~Lr~~~y-----D~vid~~~~~~s~~l~~~~~a--~~riG~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ll~~~ 74 (247)
T PF01075_consen 2 LALIKKLRKEKY-----DLVIDLQGSFRSALLARLSGA--KIRIGFGKDDRGRSLFYNRKVDRPPNKHMVDRYLSLLSEL 74 (247)
T ss_dssp HHHHHHHCTSB------SEEEE-S-SHHHHHHTCCCSB--SEEEEE-TTTSGGGGGESEEE-TTSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-----CEEEECCCCccHHHHHHHHhh--ccccccCccchhhhhcccccccccccchHHHHHHHHHHHh
Confidence 578899998877 78888887653 22222222 123333322220011111 11111 334456666666544
Q ss_pred HHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEecc
Q 028700 88 QKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRK 167 (205)
Q Consensus 88 ~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i~~ 167 (205)
. +.+.. ..-+.+..++++.....+++...+.. .|-+|+.+ ....+.-+.+...++.+.+. +.+..+.+-+
T Consensus 75 ~---~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~--~i~i~~~a-~~~~k~wp~e~~~~l~~~l~-~~~~~vvl~g 144 (247)
T PF01075_consen 75 L---GIPYP---STKPELPLSEEEEAAARELLKSKDKP--YIGINPGA-SWPSKRWPAEKWAELIERLK-ERGYRVVLLG 144 (247)
T ss_dssp H---TS-SS---SSSS----THHHHTTHHTTTT-TTSS--EEEEE----SSGGGS--HHHHHHHHHHHC-CCT-EEEE--
T ss_pred c---CCCCC---CCCcCCcCCHHHHHHHHHhhhhccCC--eEEEeecC-CCccccCCHHHHHHHHHHHH-hhCceEEEEc
Confidence 2 22110 12344555666666666666522211 23445544 34455666788888888888 6776666655
Q ss_pred cccc
Q 028700 168 QMGQ 171 (205)
Q Consensus 168 ~~g~ 171 (205)
...+
T Consensus 145 ~~~~ 148 (247)
T PF01075_consen 145 GPEE 148 (247)
T ss_dssp SSHH
T ss_pred cchH
Confidence 4443
No 333
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.41 E-value=6e+02 Score=22.77 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=26.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCceEEEeec
Q 028700 99 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPF 131 (205)
Q Consensus 99 ~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~ 131 (205)
+-+|.|++.+..++++|.++++.++.+++.++-
T Consensus 158 VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~ 190 (428)
T cd01965 158 VNLLPGFPLTPGDVREIKRILEAFGLEPIILPD 190 (428)
T ss_pred EEEECCCCCCccCHHHHHHHHHHcCCCEEEecC
Confidence 347889987666789999999999988877764
No 334
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=21.31 E-value=4.9e+02 Score=21.77 Aligned_cols=68 Identities=7% Similarity=0.161 Sum_probs=39.3
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee-cCCCCCCCCccCCcHHHHHHHHHH
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP-FNPIGSVSQFRTSSDDKVSSFQKI 154 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip-~~~~g~~~~~~~~~~e~l~~~~~~ 154 (205)
.++.+.|..+.+.+|+..|- +..+-+..+.+++..++..++.+= .|++-.......-+.+++..+.+.
T Consensus 107 ~ll~e~g~~lvvh~vi~gg~-~~~dtl~~~~~l~~~~~~~~~~Vvw~N~~~G~~~~~gk~fe~~~~y~~~ 175 (241)
T PRK13886 107 ALLQDMGHELVVHTVVTGGQ-ALLDTVSGFAQLASQFPAECLFVVWLNPYWGPIEHEGKGFEQMKAYTAN 175 (241)
T ss_pred HHHHHCCceEEEEEEECCCc-ccHHHHHHHHHHHHHcCCCceEEEEecCccCcccccCCCHHHhHhhHHH
Confidence 34556899999999977664 445667778777777642222222 344321222233456666666554
No 335
>PRK01060 endonuclease IV; Provisional
Probab=21.27 E-value=2.1e+02 Score=23.63 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHhcCCce
Q 028700 106 NDEEQHAHQLGKLLETFQVV 125 (205)
Q Consensus 106 NDs~e~i~~l~~~l~~~~~~ 125 (205)
..++++++++.+.+++.+..
T Consensus 43 ~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 43 PLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 45677788888888777643
No 336
>PRK05402 glycogen branching enzyme; Provisional
Probab=21.22 E-value=3.1e+02 Score=26.75 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCc-eEEEeecCCCC--CCCCc-----cC-----CcHHHHHHHHHHHHhcCCceEEec
Q 028700 110 QHAHQLGKLLETFQV-VVNLIPFNPIG--SVSQF-----RT-----SSDDKVSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 110 e~i~~l~~~l~~~~~-~v~lip~~~~g--~~~~~-----~~-----~~~e~l~~~~~~l~~~~Gi~~~i~ 166 (205)
+-++.++++++++++ .|.|+|..... ....| .. -+.++++++.+.+- +.||.|.+-
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H-~~Gi~VilD 334 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACH-QAGIGVILD 334 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHH-HCCCEEEEE
Confidence 334566789999985 78999985431 11112 11 23678888888887 799988653
No 337
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=21.22 E-value=1.1e+02 Score=21.93 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHhcCCceEEecccccccccccccccccccccccCCCCCCCCCChh
Q 028700 151 FQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISAKSTPPVTDIE 200 (205)
Q Consensus 151 ~~~~l~~~~Gi~~~i~~~~g~d~~~~Cgql~~~~~~~~~~~~~~~~~~~~ 200 (205)
+.+.+. +.|+.. .-.++| ++||+++..-..- ..+-++.++.|
T Consensus 25 iLe~a~-~~gi~i-~~~C~~----g~C~TC~v~v~~G--~~~v~~~~~~e 66 (102)
T COG0633 25 LLEAAE-RNGIPI-EYACRG----GACGTCRVKVLEG--FDEVSPPEESE 66 (102)
T ss_pred HHHHHH-HCCCcc-eecCCC----CccCccEEEEecC--cccCCCcchHH
Confidence 356666 689883 346677 6899998765554 23444555554
No 338
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=21.13 E-value=7.9e+02 Score=25.63 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=33.3
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCC
Q 028700 4 PLNNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 4 Pllq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d 61 (205)
|-.+.+++.++.+.+.+.|. ..+++ +|+|.. | . ++.+.+.. .+-+.+|+.|
T Consensus 684 ~~~~l~y~~~~ak~l~~~Ga----d~I~ikDt~Gll~P~~~~~Lv~~lk~~~---~~pi~~H~Hd 741 (1143)
T TIGR01235 684 PKYDLKYYTNLAVELEKAGA----HILGIKDMAGLLKPAAAKLLIKALREKT---DLPIHFHTHD 741 (1143)
T ss_pred CCCCHHHHHHHHHHHHHcCC----CEEEECCCcCCcCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 44568899999999988765 36888 999986 4 2 33443332 2446666654
No 339
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=21.13 E-value=71 Score=23.93 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCc
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGI 37 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~ 37 (205)
++.+.++++.|+++|+ .++|-||+.
T Consensus 29 ~~g~~~~l~~Lk~~g~-----~~~I~Sn~~ 53 (147)
T TIGR01656 29 RPGAVPALLTLRAAGY-----TVVVVTNQS 53 (147)
T ss_pred cCChHHHHHHHHHCCC-----EEEEEeCCC
Confidence 3568899999999988 899999875
No 340
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=21.02 E-value=1.4e+02 Score=22.52 Aligned_cols=34 Identities=6% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++++.+++.|+ .+.|-|+|....++.++..
T Consensus 76 ~g~~~~l~~l~~~g~-----~~~ivS~~~~~~i~~~~~~ 109 (177)
T TIGR01488 76 PGARELISWLKERGI-----DTVIVSGGFDFFVEPVAEK 109 (177)
T ss_pred cCHHHHHHHHHHCCC-----EEEEECCCcHHHHHHHHHH
Confidence 457888999988877 7999999987766666653
No 341
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.02 E-value=1.8e+02 Score=25.71 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCCH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPVQ 62 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d~ 62 (205)
..++++.++++.+.+.|. ..+++ +|+|.. | . ++.+.+.. .+-+++|.-|.
T Consensus 139 ~~~~~l~~~~~~~~~~Ga----~~i~l~DT~G~~~P~~v~~lv~~l~~~~---~v~l~~H~HNd 195 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGA----DRFRFADTVGILDPFSTYELVRALRQAV---DLPLEMHAHND 195 (365)
T ss_pred CCHHHHHHHHHHHHHcCc----CEEEEcccCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCC
Confidence 358999999999987654 35777 999975 4 3 34443332 24467776653
No 342
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=1.2e+02 Score=22.23 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 028700 99 YIMLDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 99 ~~lIpGiNDs~e~i~~l~~~l~~~ 122 (205)
+.+|.|++.++.+++.||.-++..
T Consensus 42 VTiI~Gld~~~~dlk~Lak~LKk~ 65 (104)
T COG0023 42 VTIIEGLDLKDIDLKKLAKELKKK 65 (104)
T ss_pred EEEEeCcccchhhHHHHHHHHHHH
Confidence 457999999999999999999865
No 343
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=20.61 E-value=1.2e+02 Score=23.07 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=31.7
Q ss_pred eecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEecccccccccccccccccccccccCC----------CCCCCCCC
Q 028700 129 IPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGACGQLVVNLPDKISA----------KSTPPVTD 198 (205)
Q Consensus 129 ip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~~~Cgql~~~~~~~~~~----------~~~~~~~~ 198 (205)
+|++.-| . -..-+.+++.+=+++|. ++|+||+..-..+-++ +.|||-..
T Consensus 9 v~ln~~G-~--t~~~s~~q~~~GkrLF~------------------~~C~~CH~GG~TktNpnV~L~le~L~~AtPpRDN 67 (135)
T PF14495_consen 9 VPLNEQG-E--TVTFSPEQLKRGKRLFN------------------ASCAQCHVGGITKTNPNVSLSLEDLAGATPPRDN 67 (135)
T ss_dssp EESSTTS----EEE--HHHHHHHHHHHH------------------HHTHHHHGGGCBTTSTTSBSSHHHHHTSSS--SS
T ss_pred eeeCCCC-C--EEEECHHHHHHHHHHHH------------------HHHHhhccCCcccCCCCCCcCHHHHccCCCCccc
Confidence 4666554 1 23356777777777776 7888888666555554 46788877
Q ss_pred hhhh
Q 028700 199 IEDL 202 (205)
Q Consensus 199 ~~~~ 202 (205)
|+.|
T Consensus 68 i~~L 71 (135)
T PF14495_consen 68 IEAL 71 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 344
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=20.61 E-value=1.5e+02 Score=21.66 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.+++.|+ ++.+=||+....++..+.
T Consensus 80 ~~~~~~L~~l~~~~~-----~~~i~Sn~~~~~~~~~l~ 112 (176)
T PF13419_consen 80 PGVRELLERLKAKGI-----PLVIVSNGSRERIERVLE 112 (176)
T ss_dssp TTHHHHHHHHHHTTS-----EEEEEESSEHHHHHHHHH
T ss_pred hhhhhhhhhcccccc-----eeEEeecCCccccccccc
Confidence 448899999998877 798889988765544444
No 345
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=20.42 E-value=1.1e+02 Score=25.36 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.|+++|+ +++|-||+....+..++.
T Consensus 104 pg~~elL~~L~~~g~-----~l~I~T~~~~~~~~~~l~ 136 (267)
T PRK13478 104 PGVLEVIAALRARGI-----KIGSTTGYTREMMDVVVP 136 (267)
T ss_pred CCHHHHHHHHHHCCC-----EEEEEcCCcHHHHHHHHH
Confidence 457889999998888 899999987765444443
No 346
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=20.29 E-value=1.9e+02 Score=27.17 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-----HHHHHhhcCCCceEEEeecCCCH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-----AINKFHSDLPGLNLAVSLHAPVQ 62 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-----~~~~l~~~~~~~~l~~slk~~d~ 62 (205)
++|+.++++.+.+.|.. .+++ +|+|.. | .++.+... ..+-+++|.-|.
T Consensus 157 ~~~l~~~~~~~~~~Gad----~i~l~DTvG~~~P~~v~~li~~l~~~---~~v~i~~H~HND 211 (524)
T PRK12344 157 PEYALATLKAAAEAGAD----WVVLCDTNGGTLPHEVAEIVAEVRAA---PGVPLGIHAHND 211 (524)
T ss_pred HHHHHHHHHHHHhCCCC----eEEEccCCCCcCHHHHHHHHHHHHHh---cCCeEEEEECCC
No 347
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=20.20 E-value=6.2e+02 Score=22.51 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=40.0
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCC
Q 028700 66 CQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPI 134 (205)
Q Consensus 66 ~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~ 134 (205)
..+||...-..++++.+-++.+-+++|..+.++.= -+|.+-++|.+++|.+ -+ ++=|.|||.
T Consensus 82 asiTGGdPl~~ieR~~~~ir~LK~efG~~fHiHLY-T~g~~~~~e~l~~L~e----AG--LDEIRfHp~ 143 (353)
T COG2108 82 ASITGGDPLLEIERTVEYIRLLKDEFGEDFHIHLY-TTGILATEEALKALAE----AG--LDEIRFHPP 143 (353)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHhhccceeEEEe-eccccCCHHHHHHHHh----CC--CCeEEecCC
Confidence 34555554445677777888777778888888743 4689989887776643 22 333456773
No 348
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=20.19 E-value=3.4e+02 Score=25.54 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=27.8
Q ss_pred hcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEE
Q 028700 90 NSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNL 128 (205)
Q Consensus 90 ~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~l 128 (205)
.+|.++++-+=-.+ .|++++++.+.+++++.++.+-+
T Consensus 354 ~fg~p~VVaiN~F~--~Dt~~Ei~~v~~~~~~~g~~~~~ 390 (524)
T cd00477 354 KFGVPVVVAINKFS--TDTDAELALVRKLAEEAGAFVAV 390 (524)
T ss_pred HcCCCeEEEecCCC--CCCHHHHHHHHHHHHHcCCCEEE
Confidence 37888877744444 58999999999999988754433
No 349
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=20.06 E-value=35 Score=18.12 Aligned_cols=7 Identities=43% Similarity=0.833 Sum_probs=4.9
Q ss_pred ccccccc
Q 028700 174 SGACGQL 180 (205)
Q Consensus 174 ~~~Cgql 180 (205)
-+||||=
T Consensus 12 LsgCG~K 18 (24)
T PF13627_consen 12 LSGCGQK 18 (24)
T ss_pred HHhcccC
Confidence 3788874
No 350
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.03 E-value=5.4e+02 Score=21.75 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=43.3
Q ss_pred EEEEeCCCC--CCHHHHHHHHHHHhcCCce-EEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEe
Q 028700 98 EYIMLDGVN--DEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiN--Ds~e~i~~l~~~l~~~~~~-v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+..+|-|-. ++++.+.++|+.++..+.. +..=-|-|=-....|..+.++.+..++++.+ +.|+.+..
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~-~~Gl~~~t 96 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD-KYNLPVVT 96 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH-HcCCCEEE
Confidence 456676655 6788888888888887643 2222222211123466667888999999988 79987653
Done!