Query 028700
Match_columns 205
No_of_seqs 136 out of 1166
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 02:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfa_A Ribosomal RNA large sub 100.0 1E-41 3.5E-46 301.7 21.0 184 1-187 178-365 (404)
2 3can_A Pyruvate-formate lyase- 99.9 1.4E-23 4.7E-28 166.1 17.6 151 2-166 12-181 (182)
3 3c8f_A Pyruvate formate-lyase 99.8 3.2E-19 1.1E-23 145.5 15.4 150 2-164 78-244 (245)
4 2yx0_A Radical SAM enzyme; pre 99.8 2.4E-18 8.2E-23 148.6 15.1 147 1-159 150-305 (342)
5 2z2u_A UPF0026 protein MJ0257; 99.8 1.8E-18 6.1E-23 147.3 11.7 159 1-181 136-301 (311)
6 1tv8_A MOAA, molybdenum cofact 99.6 5.4E-15 1.8E-19 127.3 16.7 177 2-189 75-276 (340)
7 2a5h_A L-lysine 2,3-aminomutas 99.2 2.1E-10 7.1E-15 101.8 16.3 136 2-156 171-316 (416)
8 3iix_A Biotin synthetase, puta 99.2 3.1E-10 1.1E-14 97.5 15.9 142 2-156 109-257 (348)
9 1r30_A Biotin synthase; SAM ra 99.0 1.3E-08 4.4E-13 88.5 16.8 139 3-156 127-274 (369)
10 3t7v_A Methylornithine synthas 98.9 1.9E-08 6.5E-13 86.7 12.2 140 2-154 116-264 (350)
11 1olt_A Oxygen-independent copr 98.2 0.00012 4E-09 65.3 17.2 153 2-163 113-284 (457)
12 2qgq_A Protein TM_1862; alpha- 98.1 0.00017 5.9E-09 60.8 16.4 118 9-135 71-197 (304)
13 1hfe_L Protein (Fe-only hydrog 95.8 1.4E-05 4.8E-10 70.8 -13.0 140 2-163 115-274 (421)
14 4fhd_A Spore photoproduct lyas 92.8 0.52 1.8E-05 40.8 9.0 101 9-120 179-281 (368)
15 2l69_A Rossmann 2X3 fold prote 78.6 14 0.00048 25.6 8.4 73 76-165 34-106 (134)
16 4f3h_A Fimxeal, putative uncha 72.1 19 0.00065 28.3 8.4 86 7-115 141-230 (250)
17 3s83_A Ggdef family protein; s 65.6 31 0.0011 27.1 8.4 94 7-124 137-231 (259)
18 1xw3_A Sulfiredoxin; retroredu 65.3 5.7 0.0002 28.2 3.4 60 125-186 13-81 (110)
19 2ztj_A Homocitrate synthase; ( 61.2 77 0.0026 27.0 12.1 114 2-124 45-158 (382)
20 3cpr_A Dihydrodipicolinate syn 56.2 76 0.0026 26.0 9.4 78 76-165 67-147 (304)
21 1ydn_A Hydroxymethylglutaryl-C 55.2 82 0.0028 25.5 13.8 128 11-156 60-194 (295)
22 3d0c_A Dihydrodipicolinate syn 54.4 54 0.0018 27.1 8.2 80 76-167 63-144 (314)
23 2ehh_A DHDPS, dihydrodipicolin 53.5 78 0.0027 25.7 9.0 60 98-165 69-131 (294)
24 2cw6_A Hydroxymethylglutaryl-C 53.1 91 0.0031 25.3 13.9 122 38-170 83-212 (298)
25 1xky_A Dihydrodipicolinate syn 52.5 74 0.0025 26.0 8.7 60 98-165 81-143 (301)
26 3e96_A Dihydrodipicolinate syn 52.3 41 0.0014 27.8 7.2 78 76-166 63-143 (316)
27 2yxg_A DHDPS, dihydrodipicolin 51.1 67 0.0023 26.1 8.2 60 98-165 69-131 (289)
28 1yzs_A Sulfiredoxin; PARB doma 50.6 12 0.00043 26.9 3.1 58 125-184 24-90 (121)
29 2bas_A YKUI protein; EAL domai 50.2 87 0.003 26.9 9.1 95 5-123 153-248 (431)
30 2r6o_A Putative diguanylate cy 49.0 41 0.0014 27.4 6.5 92 7-125 161-256 (294)
31 3hv8_A Protein FIMX; EAL phosp 48.9 58 0.002 25.6 7.3 85 7-115 151-239 (268)
32 2ojp_A DHDPS, dihydrodipicolin 48.7 85 0.0029 25.5 8.5 60 98-165 70-132 (292)
33 1o5k_A DHDPS, dihydrodipicolin 48.4 69 0.0024 26.3 7.9 60 98-165 81-143 (306)
34 3qze_A DHDPS, dihydrodipicolin 47.7 87 0.003 25.8 8.4 79 76-166 74-155 (314)
35 3na8_A Putative dihydrodipicol 47.4 79 0.0027 26.1 8.1 78 76-165 75-155 (315)
36 3flu_A DHDPS, dihydrodipicolin 47.0 95 0.0033 25.3 8.5 79 76-166 58-139 (297)
37 3tak_A DHDPS, dihydrodipicolin 45.8 79 0.0027 25.7 7.8 59 99-165 71-132 (291)
38 2rfg_A Dihydrodipicolinate syn 45.6 68 0.0023 26.2 7.4 60 98-165 69-131 (297)
39 2vc6_A MOSA, dihydrodipicolina 45.4 91 0.0031 25.3 8.1 27 98-124 69-96 (292)
40 1f6k_A N-acetylneuraminate lya 45.3 72 0.0025 25.9 7.5 27 98-124 73-100 (293)
41 3o1n_A 3-dehydroquinate dehydr 44.5 73 0.0025 25.9 7.3 73 76-161 117-190 (276)
42 4hjf_A Ggdef family protein; s 44.2 43 0.0015 27.9 6.0 116 7-153 210-326 (340)
43 3si9_A DHDPS, dihydrodipicolin 44.1 99 0.0034 25.5 8.2 78 76-165 73-153 (315)
44 2r8w_A AGR_C_1641P; APC7498, d 44.0 80 0.0027 26.3 7.7 78 76-165 85-165 (332)
45 2wkj_A N-acetylneuraminate lya 43.1 76 0.0026 26.0 7.3 60 98-165 80-143 (303)
46 3fkr_A L-2-keto-3-deoxyarabona 42.9 1E+02 0.0036 25.2 8.2 13 111-123 91-103 (309)
47 3l21_A DHDPS, dihydrodipicolin 42.3 1.1E+02 0.0037 25.1 8.1 79 76-166 66-147 (304)
48 3lg3_A Isocitrate lyase; conse 41.2 55 0.0019 28.7 6.3 96 60-166 246-351 (435)
49 2pr7_A Haloacid dehalogenase/e 40.9 20 0.00067 24.4 2.9 26 9-39 21-46 (137)
50 2v9d_A YAGE; dihydrodipicolini 40.8 1E+02 0.0035 25.8 7.9 78 76-165 82-162 (343)
51 3a5f_A Dihydrodipicolinate syn 40.2 68 0.0023 26.1 6.5 26 99-124 71-97 (291)
52 3pjx_A Cyclic dimeric GMP bind 40.1 72 0.0025 27.0 7.0 91 7-124 321-415 (430)
53 3hvb_A Protein FIMX; EAL phosp 39.6 1.5E+02 0.0053 25.0 9.0 89 7-123 320-412 (437)
54 4b4t_W RPN10, 26S proteasome r 38.4 1E+02 0.0036 25.0 7.3 47 103-156 116-162 (268)
55 3kzp_A LMO0111 protein, putati 38.2 1.3E+02 0.0044 22.8 11.0 87 8-123 127-220 (235)
56 4h3d_A 3-dehydroquinate dehydr 38.1 26 0.0009 28.3 3.6 35 26-61 18-57 (258)
57 3nvb_A Uncharacterized protein 38.0 18 0.00061 31.3 2.7 35 8-47 258-292 (387)
58 2v5d_A O-GLCNACASE NAGJ; famil 38.0 64 0.0022 30.1 6.6 66 108-177 164-237 (737)
59 1mio_B Nitrogenase molybdenum 36.9 55 0.0019 28.5 5.8 108 8-130 81-202 (458)
60 3h5d_A DHDPS, dihydrodipicolin 36.5 1.8E+02 0.006 23.9 8.9 79 76-166 58-140 (311)
61 2p9j_A Hypothetical protein AQ 36.2 90 0.0031 22.0 6.1 34 9-47 39-72 (162)
62 1ayg_A Cytochrome C-552; elect 36.1 29 0.001 21.8 3.0 21 102-122 59-79 (80)
63 4f21_A Carboxylesterase/phosph 35.2 1.4E+02 0.0047 23.2 7.5 53 99-156 186-241 (246)
64 1f6k_A N-acetylneuraminate lya 34.1 1.8E+02 0.0063 23.4 8.9 43 75-117 113-156 (293)
65 2v5c_A O-GLCNACASE NAGJ; glyco 34.1 70 0.0024 29.1 6.1 66 108-177 164-237 (594)
66 3daq_A DHDPS, dihydrodipicolin 33.7 1.2E+02 0.0041 24.6 7.0 26 99-124 72-98 (292)
67 3m5v_A DHDPS, dihydrodipicolin 33.3 1.9E+02 0.0066 23.4 8.8 59 98-165 77-139 (301)
68 3tqp_A Enolase; energy metabol 33.2 71 0.0024 27.8 5.8 127 48-185 236-392 (428)
69 2yci_X 5-methyltetrahydrofolat 32.8 1.5E+02 0.0051 23.9 7.4 56 8-68 33-94 (271)
70 2v9d_A YAGE; dihydrodipicolini 32.0 2.2E+02 0.0076 23.7 9.8 42 75-116 140-182 (343)
71 1vr6_A Phospho-2-dehydro-3-deo 31.8 1.2E+02 0.004 25.7 6.7 62 103-165 113-175 (350)
72 3ctl_A D-allulose-6-phosphate 31.6 1.2E+02 0.0043 23.7 6.6 142 8-165 12-172 (231)
73 2d0s_A Cytochrome C, cytochrom 31.5 41 0.0014 21.0 3.1 21 102-122 57-78 (79)
74 2exv_A Cytochrome C-551; alpha 30.8 41 0.0014 21.0 3.0 21 102-122 61-81 (82)
75 3fvv_A Uncharacterized protein 30.1 58 0.002 24.3 4.3 34 9-47 95-128 (232)
76 1cch_A Cytochrome C551; electr 30.0 40 0.0014 21.0 2.8 21 102-122 61-81 (82)
77 4h0c_A Phospholipase/carboxyle 29.8 90 0.0031 23.5 5.4 53 99-156 154-209 (210)
78 3eb2_A Putative dihydrodipicol 29.7 88 0.003 25.6 5.6 15 8-22 24-38 (300)
79 1c75_A Cytochrome C-553; heme, 29.6 57 0.002 19.8 3.5 21 102-122 50-70 (71)
80 3gfz_A Klebsiella pneumoniae B 28.7 93 0.0032 26.6 5.8 90 8-124 290-383 (413)
81 2d73_A Alpha-glucosidase SUSB; 28.5 1.4E+02 0.0046 28.1 7.0 92 74-176 367-478 (738)
82 3c8y_A Iron hydrogenase 1; dit 28.2 13 0.00045 33.6 0.2 33 2-39 238-273 (574)
83 2cho_A Glucosaminidase, hexosa 28.1 84 0.0029 29.3 5.6 63 108-174 142-213 (716)
84 3ktc_A Xylose isomerase; putat 27.5 2.1E+02 0.0071 23.1 7.5 75 77-156 106-193 (333)
85 3ib6_A Uncharacterized protein 27.4 54 0.0019 24.1 3.6 33 9-46 37-72 (189)
86 3dqz_A Alpha-hydroxynitrIle ly 26.6 1.7E+02 0.0058 21.4 6.5 70 99-170 7-83 (258)
87 3l8h_A Putative haloacid dehal 25.8 37 0.0013 24.5 2.3 25 9-38 30-54 (179)
88 3u7q_B Nitrogenase molybdenum- 25.6 62 0.0021 28.9 4.2 34 95-130 222-255 (523)
89 3b4u_A Dihydrodipicolinate syn 25.6 1.8E+02 0.0061 23.5 6.7 26 99-124 73-99 (294)
90 1esw_A Amylomaltase; (beta,alp 25.3 50 0.0017 29.5 3.4 32 104-135 21-53 (500)
91 1qgu_B Protein (nitrogenase mo 25.0 1.5E+02 0.0051 26.3 6.5 34 95-130 218-251 (519)
92 2wqp_A Polysialic acid capsule 24.7 3.1E+02 0.011 23.0 10.3 123 6-165 88-212 (349)
93 1tz7_A 4-alpha-glucanotransfer 24.6 44 0.0015 29.9 2.9 33 103-135 37-70 (505)
94 1vs1_A 3-deoxy-7-phosphoheptul 24.3 1.4E+02 0.0048 24.2 5.8 62 103-165 45-107 (276)
95 1a56_A C-551, ferricytochrome 24.0 26 0.00089 22.1 1.0 22 101-122 58-80 (81)
96 4aie_A Glucan 1,6-alpha-glucos 23.8 1E+02 0.0036 26.7 5.3 53 112-165 34-98 (549)
97 3vgf_A Malto-oligosyltrehalose 23.5 1.1E+02 0.0039 27.1 5.5 57 108-165 117-186 (558)
98 1qyi_A ZR25, hypothetical prot 23.5 92 0.0031 26.5 4.7 34 8-46 217-250 (384)
99 1j0h_A Neopullulanase; beta-al 22.9 1.2E+02 0.004 27.2 5.5 57 108-165 174-241 (588)
100 1ea9_C Cyclomaltodextrinase; h 22.9 1.6E+02 0.0054 26.3 6.3 57 108-165 170-237 (583)
101 3bh1_A UPF0371 protein DIP2346 22.5 94 0.0032 27.4 4.4 82 40-126 59-141 (507)
102 2q02_A Putative cytoplasmic pr 22.5 2.6E+02 0.0088 21.3 7.3 123 29-168 8-141 (272)
103 2wm8_A MDP-1, magnesium-depend 22.2 71 0.0024 23.3 3.4 33 9-46 71-104 (187)
104 2inf_A URO-D, UPD, uroporphyri 21.9 1.7E+02 0.0059 24.1 6.1 36 9-49 231-266 (359)
105 1ht6_A AMY1, alpha-amylase iso 21.8 2.2E+02 0.0076 23.8 6.8 55 110-165 21-87 (405)
106 3b4u_A Dihydrodipicolinate syn 21.6 3.2E+02 0.011 22.0 9.9 41 76-116 114-158 (294)
107 1yns_A E-1 enzyme; hydrolase f 21.6 64 0.0022 25.3 3.1 32 9-45 133-164 (261)
108 2fpr_A Histidine biosynthesis 21.5 40 0.0014 24.8 1.8 23 9-36 45-67 (176)
109 3fkr_A L-2-keto-3-deoxyarabona 21.4 3.3E+02 0.011 22.1 10.7 41 75-116 120-161 (309)
110 2zxy_A Cytochrome C552, cytoch 21.3 55 0.0019 20.4 2.2 17 106-122 70-86 (87)
111 3sy8_A ROCR; TIM barrel phosph 21.2 60 0.002 27.3 3.0 93 8-124 275-368 (400)
112 3p6l_A Sugar phosphate isomera 21.0 2.8E+02 0.0095 21.1 7.6 121 29-170 11-138 (262)
113 1wzl_A Alpha-amylase II; pullu 21.0 1.4E+02 0.0049 26.6 5.6 56 109-165 172-238 (585)
114 1nnl_A L-3-phosphoserine phosp 20.9 66 0.0022 23.9 3.0 33 9-46 89-121 (225)
115 3aam_A Endonuclease IV, endoiv 20.8 2.6E+02 0.009 21.4 6.7 17 108-124 47-63 (270)
116 3bg3_A Pyruvate carboxylase, m 20.6 2.5E+02 0.0086 26.1 7.3 51 6-62 258-315 (718)
117 2gmw_A D,D-heptose 1,7-bisphos 20.4 88 0.003 23.5 3.6 24 9-37 53-76 (211)
118 3pdi_B Nitrogenase MOFE cofact 20.3 1.2E+02 0.0042 26.3 5.0 109 8-130 77-203 (458)
119 2hmc_A AGR_L_411P, dihydrodipi 20.3 3.7E+02 0.013 22.3 11.4 39 76-115 134-174 (344)
120 3qfe_A Putative dihydrodipicol 20.2 3.2E+02 0.011 22.3 7.3 15 8-22 31-45 (318)
No 1
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=100.00 E-value=1e-41 Score=301.72 Aligned_cols=184 Identities=41% Similarity=0.709 Sum_probs=158.6
Q ss_pred CCccCCCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|||||+|++++.++++.+++. |++++.++++|+|||+.+.+++++++. ++.+++|||++|++.|++++|+++.+++++
T Consensus 178 gGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~-d~~LaiSLka~d~e~~~~i~pv~~~~~le~ 256 (404)
T 3rfa_A 178 MGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMI-DVALAISLHAPNDEIRDEIVPINKKYNIET 256 (404)
T ss_dssp SSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHC-CCEEEEECCCSSHHHHHHHSGGGGTSCHHH
T ss_pred CCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhh-cceEEecccCCCHHHHHHhcCCccCCCHHH
Confidence 699999999999999999995 999999999999999999999999886 457889999999999999999988999999
Q ss_pred HHHHHHHHHHhcCC---cEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQ---KIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 80 i~~~l~~~~~~~~~---~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
+++++++|....+. +|++||+||||+||+++++.+|++|+++++++|+||||||++ ...|.+|+.+++++|+++++
T Consensus 257 vl~ai~~~~~~~g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~l~~~VnLIpynP~~-~~~~~~ps~e~i~~f~~iL~ 335 (404)
T 3rfa_A 257 FLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFP-GAPYGRSSNSRIDRFSKVLM 335 (404)
T ss_dssp HHHHHHHHHHHCTTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTTSCEEEEEEECCCCT-TCCCCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEEecCCCCCHHHHHHHHHHHHcCCCcEEEEeccCCC-CCCCCCCCHHHHHHHHHHHH
Confidence 99999888877777 899999999999999999999999999998899999999996 78899999999999999999
Q ss_pred hcCCceEEecccccccccccccccccccccc
Q 028700 157 GSYNIRTTVRKQMGQDISGACGQLVVNLPDK 187 (205)
Q Consensus 157 ~~~Gi~~~i~~~~g~d~~~~Cgql~~~~~~~ 187 (205)
++|+.+++|.++|+||+||||||+....+.
T Consensus 336 -~~Gi~vtiR~~~G~di~aaCGQL~~~~~~~ 365 (404)
T 3rfa_A 336 -SYGFTTIVRKTRGDDIDAACGQLAGDVIDR 365 (404)
T ss_dssp -HTTCEEEECCCCCC----------------
T ss_pred -HcCCcEEEcCCCCcccccccccchhhhhhh
Confidence 799999999999999999999999776544
No 2
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=99.92 E-value=1.4e-23 Score=166.13 Aligned_cols=151 Identities=17% Similarity=0.362 Sum_probs=127.4
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||++++++.++++.+++.|+ +++++|||+. ..++++.+.. + .+.+|+|+.+++.|.++.|.. ++.
T Consensus 12 GEPll~~~~~~~l~~~~~~~g~-----~~~l~TNG~l~~~~~~~l~~~~-d-~v~isld~~~~~~~~~~~g~~----~~~ 80 (182)
T 3can_A 12 GEPLLHPEFLIDILKRCGQQGI-----HRAVDTTLLARKETVDEVMRNC-E-LLLIDLKSMDSTVHQTFCDVP----NEL 80 (182)
T ss_dssp STGGGSHHHHHHHHHHHHHTTC-----CEEEECTTCCCHHHHHHHHHTC-S-EEEEECCCSCHHHHHHHHSSC----SHH
T ss_pred ccccCCHHHHHHHHHHHHHCCC-----cEEEECCCCCCHHHHHHHHhhC-C-EEEEECCCCCHHHHHHHhCCC----HHH
Confidence 8999999988999999998877 8999999986 3678888773 4 789999999999999998753 489
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcC-C--ceEEEeecCCCCCCCC------------ccCCc
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETF-Q--VVVNLIPFNPIGSVSQ------------FRTSS 144 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~-~--~~v~lip~~~~g~~~~------------~~~~~ 144 (205)
++++++.+.+ .+.++.++++++||+||+.+++.++++|++++ + ..++++||+|+| ..+ +++|+
T Consensus 81 i~~~i~~l~~-~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g-~~~~~~l~~~y~~~~~~~~~ 158 (182)
T 3can_A 81 ILKNIRRVAE-ADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIG-KGKHAKLGSIYNPKGYKMQT 158 (182)
T ss_dssp HHHHHHHHHH-TTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-------------------CCBC
T ss_pred HHHHHHHHHh-CCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccC-HHHHHHhCCcCcccCCCCCC
Confidence 9999987665 67899999999999999999999999999998 6 479999999997 332 24677
Q ss_pred HHH--HHHHHHHHHhcCCceEEec
Q 028700 145 DDK--VSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 145 ~e~--l~~~~~~l~~~~Gi~~~i~ 166 (205)
.++ ++++++.++ ++|+.+.++
T Consensus 159 ~e~~~l~~~~~~~~-~~g~~~~i~ 181 (182)
T 3can_A 159 PSEEVQQQCIQILT-DYGLKATIG 181 (182)
T ss_dssp CCHHHHHHHHHHHH-HTTCCEEEC
T ss_pred HHHHHHHHHHHHHH-HcCCceEeC
Confidence 777 999999999 799998773
No 3
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.82 E-value=3.2e-19 Score=145.45 Aligned_cols=150 Identities=16% Similarity=0.336 Sum_probs=127.8
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
|||+++++++.++++.+++.|+ +++++|||.. +.++++.+. .+ .+.+|+++.+++.|+++.|.+ +
T Consensus 78 GEP~l~~~~l~~l~~~~~~~~~-----~i~i~Tng~~~~~~~~~~~l~~~-~~-~v~isld~~~~~~~~~~~~~~----~ 146 (245)
T 3c8f_A 78 GEAILQAEFVRDWFRACKKEGI-----HTCLDTNGFVRRYDPVIDELLEV-TD-LVMLDLKQMNDEIHQNLVGVS----N 146 (245)
T ss_dssp SCGGGGHHHHHHHHHHHHTTTC-----CEEEEECCCCCCCCHHHHHHHHT-CS-EEEEECCCSSHHHHHHHHSSC----S
T ss_pred CCcCCCHHHHHHHHHHHHHcCC-----cEEEEeCCCcCcCHHHHHHHHHh-CC-EEEEeCCCCCHHHhhhccCCC----H
Confidence 8999999989999999998776 7999999954 467888876 44 789999999999999998743 4
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--ceEEEeecCCCCCC-----------CCccCCc
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--VVVNLIPFNPIGSV-----------SQFRTSS 144 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~~v~lip~~~~g~~-----------~~~~~~~ 144 (205)
++++++++.+.+ .|.++.++++++||+||+.+++.++++|+++++ ..+++.||+|.|.. ..+.+|+
T Consensus 147 ~~~~~~i~~l~~-~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (245)
T 3c8f_A 147 HRTLEFAKYLAN-KNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPK 225 (245)
T ss_dssp HHHHHHHHHHHH-HTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCC
T ss_pred HHHHHHHHHHHh-cCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCC
Confidence 889999986655 678999999999999999999999999999987 47999999998621 1246789
Q ss_pred HHHHHHHHHHHHhcCCceEE
Q 028700 145 DDKVSSFQKILRGSYNIRTT 164 (205)
Q Consensus 145 ~e~l~~~~~~l~~~~Gi~~~ 164 (205)
.++++++.+.++ +.|+.+.
T Consensus 226 ~~~~~~~~~~~~-~~G~~v~ 244 (245)
T 3c8f_A 226 KETMERVKGILE-QYGHKVM 244 (245)
T ss_dssp HHHHHHHHHHHH-TTTCCBC
T ss_pred HHHHHHHHHHHH-hcCCeec
Confidence 999999999999 7998753
No 4
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.78 E-value=2.4e-18 Score=148.65 Aligned_cols=147 Identities=17% Similarity=0.216 Sum_probs=122.4
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCH
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPL 77 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~ 77 (205)
+|||++++ .+.++++.+++.|+ +++++|||..+ .++++.+.+ . ..+.+||++.+++.|+++.+.+.+.++
T Consensus 150 gGEPll~~-~l~~ll~~~~~~g~-----~i~l~TNG~~~e~l~~L~~~g~~~-~~l~isld~~~~e~~~~i~~~~~~~~~ 222 (342)
T 2yx0_A 150 SGEPMLYP-YMGDLVEEFHKRGF-----TTFIVTNGTIPERLEEMIKEDKLP-TQLYVSITAPDIETYNSVNIPMIPDGW 222 (342)
T ss_dssp SSCGGGST-THHHHHHHHHHTTC-----EEEEEECSCCHHHHHHHHHTTCCC-SEEEEEECCSSHHHHHHHHCBSSSCHH
T ss_pred CCcccchh-hHHHHHHHHHHCCC-----cEEEEcCCCcHHHHHHHHhcCCCC-CEEEEEccCCCHHHHHHHhCCCcccHH
Confidence 69999996 79999999998876 89999999886 477887653 5 489999999999999999986556789
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCC-----CccCCcHHHHHHH
Q 028700 78 EKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVS-----QFRTSSDDKVSSF 151 (205)
Q Consensus 78 ~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~-----~~~~~~~e~l~~~ 151 (205)
++++++++.+.+ .+.++.++++++||+||+ +++++++|++.++ ..|+++||++.| .. .+.+|+.+++.++
T Consensus 223 ~~~~~~i~~l~~-~g~~v~i~~~l~~g~n~~--~~~~l~~~l~~~~~~~i~l~~~~~~~-~~~~~l~~~~~~~~e~~~~~ 298 (342)
T 2yx0_A 223 ERILRFLELMRD-LPTRTVVRLTLVKGENMH--SPEKYAKLILKARPMFVEAKAYMFVG-YSRNRLTINNMPSHQDIREF 298 (342)
T ss_dssp HHHHHHHHHHTT-CSSEEEEEEEECTTTTCC--CHHHHHHHHHHHCCSEEEEEECC-------CCCCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCEEEEEEEECCccHH--HHHHHHHHHHHcCCCEEEEEeeeecC-CCcccccccCCCCHHHHHHH
Confidence 999999986654 678899999999999998 4899999999886 579999999987 32 3567899999999
Q ss_pred HHHHHhcC
Q 028700 152 QKILRGSY 159 (205)
Q Consensus 152 ~~~l~~~~ 159 (205)
.+.+. ..
T Consensus 299 ~~~l~-~~ 305 (342)
T 2yx0_A 299 AEALV-KH 305 (342)
T ss_dssp HHHHH-TT
T ss_pred HHHHH-Hh
Confidence 99988 44
No 5
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.77 E-value=1.8e-18 Score=147.34 Aligned_cols=159 Identities=23% Similarity=0.272 Sum_probs=119.0
Q ss_pred CCccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH-HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 1 MGEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVH-AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 1 mGEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~-~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
+|||++++ .+.++++.+++.|+ +++++|||..+ .++++ ++ ..+.+|+|+.+++.|+++.+. ...+++.
T Consensus 136 gGEPll~~-~l~~li~~~~~~g~-----~~~l~TNG~~~~~l~~L---~~-~~v~isld~~~~~~~~~i~~~-~~~~~~~ 204 (311)
T 2z2u_A 136 SGEPTLYP-YLDELIKIFHKNGF-----TTFVVSNGILTDVIEKI---EP-TQLYISLDAYDLDSYRRICGG-KKEYWES 204 (311)
T ss_dssp SSCGGGST-THHHHHHHHHHTTC-----EEEEEECSCCHHHHHHC---CC-SEEEEECCCSSTTTC----CC-CHHHHHH
T ss_pred CcCccchh-hHHHHHHHHHHCCC-----cEEEECCCCCHHHHHhC---CC-CEEEEEeecCCHHHHHHHhCC-ccchHHH
Confidence 49999985 59999999998876 89999999985 34444 44 489999999999999999876 3457999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCCCCCCCCc-----cCCcHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNPIGSVSQF-----RTSSDDKVSSFQK 153 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~~g~~~~~-----~~~~~e~l~~~~~ 153 (205)
++++++.+.+ .+ ++.++++++||+|| ++.++++|+++++ ..|+++||+|+| ...+ .+|+.+++.++.+
T Consensus 205 v~~~i~~l~~-~g-~v~i~~~~~~g~n~---~~~~~~~~~~~~~~~~i~l~~~~p~g-~~~~~~~~~~~~~~~e~~~~~~ 278 (311)
T 2z2u_A 205 ILNTLDILKE-KK-RTCIRTTLIRGYND---DILKFVELYERADVHFIELKSYMHVG-YSQKRLKKEDMLQHDEILKLAK 278 (311)
T ss_dssp HHHHHHHHTT-SS-SEEEEEEECTTTTC---CGGGTHHHHHHHTCSEEEEEECC-------------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHh-cC-CEEEEEEEECCcch---hHHHHHHHHHHcCCCEEEEEeeEEcc-ccccccccccCCCHHHHHHHHH
Confidence 9999996654 56 89999999999999 6889999999887 479999999997 4433 4789999999999
Q ss_pred HHHhcCCceEEecccccccccccccccc
Q 028700 154 ILRGSYNIRTTVRKQMGQDISGACGQLV 181 (205)
Q Consensus 154 ~l~~~~Gi~~~i~~~~g~d~~~~Cgql~ 181 (205)
.+.+..|+.+. |+.....|..+.
T Consensus 279 ~l~~~~g~~~~-----~~~~~~~~~l~~ 301 (311)
T 2z2u_A 279 MLDENSSYKLI-----DDSEDSRVALLQ 301 (311)
T ss_dssp HHHTSSSEEEE-----EEEGGGTEEEEE
T ss_pred HHHHhcCceEE-----eccCcceEEEEe
Confidence 98822676553 334445565443
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.64 E-value=5.4e-15 Score=127.31 Aligned_cols=177 Identities=14% Similarity=0.214 Sum_probs=128.8
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||||++++ +.++++.+++.+. ...++++|||.. +.++.|.+.+.+ .+.+||++.+++.|+++++.. .++++
T Consensus 75 GEPll~~~-l~~li~~~~~~~~---~~~i~i~TNG~ll~~~~~~L~~~g~~-~v~iSld~~~~~~~~~i~~~~--~~~~~ 147 (340)
T 1tv8_A 75 GEPLMRRD-LDVLIAKLNQIDG---IEDIGLTTNGLLLKKHGQKLYDAGLR-RINVSLDAIDDTLFQSINNRN--IKATT 147 (340)
T ss_dssp SCGGGSTT-HHHHHHHHTTCTT---CCEEEEEECSTTHHHHHHHHHHHTCC-EEEEECCCSSHHHHHHHHSSC--CCHHH
T ss_pred CCccchhh-HHHHHHHHHhCCC---CCeEEEEeCccchHHHHHHHHHCCCC-EEEEecCCCCHHHHHHhhCCC--CCHHH
Confidence 99999976 6799999987632 237999999986 467888888764 899999999999999998653 36999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCcc----CCcHHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR----TSSDDKVSSFQKIL 155 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~----~~~~e~l~~~~~~l 155 (205)
++++++.+.+ .|.+|.+++++++|+|++ ++.++++|+++++..+.+++|+|++....|. .+.++.++.+.+.+
T Consensus 148 v~~~i~~l~~-~g~~v~i~~vv~~g~n~~--ei~~~~~~~~~~g~~~~~i~~~p~~~~~~~~~~~~~~~~e~~~~l~~~~ 224 (340)
T 1tv8_A 148 ILEQIDYATS-IGLNVKVNVVIQKGINDD--QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHF 224 (340)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEECTTTTGG--GHHHHHHHHHHTTCCEEEEECCCBCSSSSBCCSSCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-CCCCEEEEEEEeCCCCHH--HHHHHHHHHHhcCCeEEEEEeeEcCCCccchhhcCCCHHHHHHHHHhhC
Confidence 9999997665 577999999999999986 7999999999998878899999987333332 23345444455443
Q ss_pred HhcC--------Cce--EEecc---------cccccccccccccccccccccC
Q 028700 156 RGSY--------NIR--TTVRK---------QMGQDISGACGQLVVNLPDKIS 189 (205)
Q Consensus 156 ~~~~--------Gi~--~~i~~---------~~g~d~~~~Cgql~~~~~~~~~ 189 (205)
. .. +.. ..+.+ +.....|++|..++.++.-+..
T Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~dG~v~ 276 (340)
T 1tv8_A 225 E-IDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFY 276 (340)
T ss_dssp C-EEEECCSSTTCSSEEEEETTTCCEEEEECTTTSCCGGGCCEEEECTTSCEE
T ss_pred C-ccccccCCCCCCCeEEEECCCCeEEEEECCCCCccccCCCcEEECCCccEE
Confidence 1 10 111 11111 1224678889888776654443
No 7
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.25 E-value=2.1e-10 Score=101.81 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=101.6
Q ss_pred CccCCCHH-HHHHHHHHhhcC-CCCCCCCcEEEEcCCc--------HHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCC
Q 028700 2 GEPLNNYA-ALVEAVRIMTGL-PFQVSPKRITVSTVGI--------VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPA 71 (205)
Q Consensus 2 GEPllq~~-~l~~~l~~lk~~-~i~~~~~~~~v~T~G~--------~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~ 71 (205)
||||++++ .+.++++.+++. ++ ..+.+.|||. ...++.|.+. + .+.+|+|+.++ ++++
T Consensus 171 GEPll~~d~~L~~il~~l~~~~~v----~~i~i~Tng~~~~p~~it~e~l~~L~~~--~-~v~Isl~~~~~---~ei~-- 238 (416)
T 2a5h_A 171 GDALLVSDETLEYIIAKLREIPHV----EIVRIGSRTPVVLPQRITPELVNMLKKY--H-PVWLNTHFNHP---NEIT-- 238 (416)
T ss_dssp SCTTSSCHHHHHHHHHHHHTSTTC----CEEEEECSHHHHCGGGCCHHHHHHHGGG--C-SEEEEECCCSG---GGCC--
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCc----cEEEEEecccccccccCCHHHHHHHHhc--C-cEEEEEecCCH---HHHh--
Confidence 99999876 689999999875 22 3699999992 1246666665 3 68899998776 3332
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHH
Q 028700 72 ARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSF 151 (205)
Q Consensus 72 ~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~ 151 (205)
+.++++++.+.+ .|.+|.+++++++|+||+++++.++++++..+++....+.+.+.+.+..+...+..+..++
T Consensus 239 ------~~v~~ai~~L~~-aGi~v~i~~vll~GvNd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~~~~~~~~ei 311 (416)
T 2a5h_A 239 ------EESTRACQLLAD-AGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEI 311 (416)
T ss_dssp ------HHHHHHHHHHHH-TTCCEEEEEECCTTTTCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHH
T ss_pred ------HHHHHHHHHHHH-cCCEEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccccCCcccHHHH
Confidence 688999986655 6889999999999999999999999999999987666677777654444444455555555
Q ss_pred HHHHH
Q 028700 152 QKILR 156 (205)
Q Consensus 152 ~~~l~ 156 (205)
.+.++
T Consensus 312 l~~l~ 316 (416)
T 2a5h_A 312 IEGLR 316 (416)
T ss_dssp HHTTB
T ss_pred HHHHH
Confidence 55554
No 8
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.23 E-value=3.1e-10 Score=97.47 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=113.2
Q ss_pred Cc-cCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 2 GE-PLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 2 GE-Pllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
|| |+++++.+.++++.+++.++ ++++++.... ..++++.+.+.+ .+.+++++.+++.|+++.+.. ++++
T Consensus 109 Ge~p~~~~~~~~~li~~i~~~~~-----~i~~s~g~l~~e~l~~L~~ag~~-~v~i~let~~~~~~~~i~~~~---~~~~ 179 (348)
T 3iix_A 109 GEDPYXMPDVISDIVKEIKKMGV-----AVTLSLGEWPREYYEKWKEAGAD-RYLLRHETANPVLHRKLRPDT---SFEN 179 (348)
T ss_dssp SCCGGGTTHHHHHHHHHHHTTSC-----EEEEECCCCCHHHHHHHHHHTCC-EEECCCBCSCHHHHHHHSTTS---CHHH
T ss_pred CCCCCccHHHHHHHHHHHHhcCc-----eEEEecCCCCHHHHHHHHHhCCC-EEeeeeeeCCHHHHHHhCCCc---CHHH
Confidence 88 99998999999999998754 6775544443 468888888874 888999999999999998754 7999
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCC---ccCCcHHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQ---FRTSSDDKVSSFQKI 154 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~---~~~~~~e~l~~~~~~ 154 (205)
++++++.+.+ .| +.+.+.+|.|+ +++.+++.++++|+++++. .+.+.||+|.. +.. ..+++.++..++...
T Consensus 180 ~~~~i~~~~~-~G--i~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~-gt~l~~~~~~~~~e~~~~~a~ 255 (348)
T 3iix_A 180 RLNCLLTLKE-LG--YETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHP-DTPLANEKKGDFTLTLKMVAL 255 (348)
T ss_dssp HHHHHHHHHH-TT--CEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCT-TSTTTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hC--CeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCC-CCCcccCCCCCHHHHHHHHHH
Confidence 9999986544 55 46888899999 8999999999999999874 58888999874 433 356677777776666
Q ss_pred HH
Q 028700 155 LR 156 (205)
Q Consensus 155 l~ 156 (205)
++
T Consensus 256 ~R 257 (348)
T 3iix_A 256 TR 257 (348)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 9
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.02 E-value=1.3e-08 Score=88.50 Aligned_cols=139 Identities=9% Similarity=0.072 Sum_probs=108.9
Q ss_pred ccC-CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH--HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHH
Q 028700 3 EPL-NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV--HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEK 79 (205)
Q Consensus 3 EPl-lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~--~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~ 79 (205)
||. ++.+++.++++.+++.++ .+++ |+|.. ..+++|.+++.+ .+.+++++ +++.++++.+. .++++
T Consensus 127 ~p~~~~~~~l~~ll~~ik~~g~-----~i~~-t~G~l~~e~l~~L~~aGvd-~v~i~les-~~e~~~~i~~~---~~~~~ 195 (369)
T 1r30_A 127 NPHERDMPYLEQMVQGVKAMGL-----EACM-TLGTLSESQAQRLANAGLD-YYNHNLDT-SPEFYGNIITT---RTYQE 195 (369)
T ss_dssp SCCTTTHHHHHHHHHHHHHTTS-----EEEE-ECSSCCHHHHHHHHHHCCC-EEECCCBS-CHHHHHHHCCS---SCHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCC-----eEEE-ecCCCCHHHHHHHHHCCCC-EEeecCcC-CHHHHHHhCCC---CCHHH
Confidence 455 578999999999998765 5775 88875 468999999875 89999999 99999999763 47899
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC--c-eEEEeecCCCCCCCC---ccCCcHHHHHHHHH
Q 028700 80 LMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ--V-VVNLIPFNPIGSVSQ---FRTSSDDKVSSFQK 153 (205)
Q Consensus 80 i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~--~-~v~lip~~~~g~~~~---~~~~~~e~l~~~~~ 153 (205)
++++++.+.+ .|. .+++.+|.|+|++.+++.+++++++.++ . .+.+-+|.|.. +.. ..+++.+++.++.+
T Consensus 196 ~l~~i~~a~~-~Gi--~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~-gT~l~~~~~~~~~~~~~~~~ 271 (369)
T 1r30_A 196 RLDTLEKVRD-AGI--KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVK-GTPLADNDDVDAFDFIRTIA 271 (369)
T ss_dssp HHHHHHHHHH-HHC--EEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCT-TSTTSSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-cCC--eeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecC-CCcCCCCCCCCHHHHHHHHH
Confidence 9999986655 443 6778899999999999999999999986 2 56666677664 433 35678888777766
Q ss_pred HHH
Q 028700 154 ILR 156 (205)
Q Consensus 154 ~l~ 156 (205)
.++
T Consensus 272 ~~r 274 (369)
T 1r30_A 272 VAR 274 (369)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 10
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=98.87 E-value=1.9e-08 Score=86.69 Aligned_cols=140 Identities=17% Similarity=0.131 Sum_probs=104.7
Q ss_pred Cc-cCCC--HHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GE-PLNN--YAALVEAVRIMTGL-PFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GE-Pllq--~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|| |+.+ .+.+.++++.+++. ++ +++++..... ..+++|.+.+.+ .+.+++++.+++.++++.+ +.+
T Consensus 116 Ge~p~~~~~~~~~~~l~~~ik~~~~i-----~i~~s~g~~~~e~l~~L~~aG~~-~i~i~lEt~~~~~~~~i~~---~~~ 186 (350)
T 3t7v_A 116 GEDPYYYEDPNRFVELVQIVKEELGL-----PIMISPGLMDNATLLKAREKGAN-FLALYQETYDTELYRKLRV---GQS 186 (350)
T ss_dssp CCCHHHHHSTHHHHHHHHHHHHHHCS-----CEEEECSSCCHHHHHHHHHTTEE-EEECCCBCSCHHHHHHHST---TCC
T ss_pred CCCCccccCHHHHHHHHHHHHhhcCc-----eEEEeCCCCCHHHHHHHHHcCCC-EEEEeeecCCHHHHHHhCC---CCC
Confidence 77 7754 68899999999875 54 6766543233 468999988863 7889999999999999976 357
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc---cCCcHHHHHHHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF---RTSSDDKVSSFQ 152 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~---~~~~~e~l~~~~ 152 (205)
.++.++.++.+.+ .|.+ +.+-+|.|++++.+++.+.++++++++. .+.+.||+|.. +..+ .+++.++..++.
T Consensus 187 ~~~~l~~i~~a~~-~Gi~--v~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p~~-gT~l~~~~~~~~~e~l~~i 262 (350)
T 3t7v_A 187 FDGRVNARRFAKQ-QGYC--VEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQE-GTPLEGFRDKSNLSELKII 262 (350)
T ss_dssp HHHHHHHHHHHHH-HTCE--EEEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCCCT-TSTTTTCCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHH-cCCe--EccceEeecCCCHHHHHHHHHHHHhCCCCEEEecceeeCC-CCcCccCCCCChHHHHHHH
Confidence 8999999985544 5654 6677889999999999999999999985 58999999974 4332 344444444433
Q ss_pred HH
Q 028700 153 KI 154 (205)
Q Consensus 153 ~~ 154 (205)
..
T Consensus 263 a~ 264 (350)
T 3t7v_A 263 SV 264 (350)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 11
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=98.15 E-value=0.00012 Score=65.31 Aligned_cols=153 Identities=9% Similarity=0.095 Sum_probs=108.0
Q ss_pred CccC-CCHHHHHHHHHHhhcC-CCCCCCCcEEEEcCCcH---HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPL-NNYAALVEAVRIMTGL-PFQVSPKRITVSTVGIV---HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPl-lq~~~l~~~l~~lk~~-~i~~~~~~~~v~T~G~~---~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
|+|+ +..+.+.++++.+++. ++. ....++++|+... ..++.+.+.+. ..+.+.+.+.+++..+.+.+ ..+
T Consensus 113 Gtpt~l~~~~l~~ll~~i~~~~~~~-~~~eitie~~p~~l~~e~l~~L~~~G~-~rislGvQS~~~~~l~~i~R---~~~ 187 (457)
T 1olt_A 113 GTPTYLNKAQISRLMKLLRENFQFN-ADAEISIEVDPREIELDVLDHLRAEGF-NRLSMGVQDFNKEVQRLVNR---EQD 187 (457)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCEE-EEEEEEEEECSSSCCTHHHHHHHHTTC-CEEEEEEECCCHHHHHHHTC---CCC
T ss_pred CCcccCCHHHHHHHHHHHHHhCCCC-CCcEEEEEEccCcCCHHHHHHHHHcCC-CEEEEeeccCCHHHHHHhCC---CCC
Confidence 7898 4778899999988863 110 1136889998753 46888888886 48999999999999999854 457
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCC--------CccCCcHH
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS--------QFRTSSDD 146 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~--------~~~~~~~e 146 (205)
.++++++++.+.+ .|.. .+++-+|-|+ +++.+++.+.++++..++. ++.+.+|.+.. +. +...|+++
T Consensus 188 ~~~~~~ai~~~r~-~G~~-~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p-~t~~~~~~~~~~~lp~~~ 264 (457)
T 1olt_A 188 EEFIFALLNHARE-IGFT-STNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLP-TIFAAQRKIKDADLPSPQ 264 (457)
T ss_dssp HHHHHHHHHHHHH-TTCC-SCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCT-TTSGGGGGSCGGGSCCHH
T ss_pred HHHHHHHHHHHHH-cCCC-cEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCc-CchhHhhccccCCCcCHH
Confidence 8999999986554 4543 1444466665 6789999999999999874 78888888542 21 22345654
Q ss_pred H----HHHHHHHHHhcCCceE
Q 028700 147 K----VSSFQKILRGSYNIRT 163 (205)
Q Consensus 147 ~----l~~~~~~l~~~~Gi~~ 163 (205)
+ ++.+.+.+. ..|+..
T Consensus 265 ~~~~~~~~~~~~L~-~~Gy~~ 284 (457)
T 1olt_A 265 QKLDILQETIAFLT-QSGYQF 284 (457)
T ss_dssp HHHHHHHHHHHHHH-HTTCEE
T ss_pred HHHHHHHHHHHHHH-HCCCeE
Confidence 3 344456677 688743
No 12
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=98.10 E-value=0.00017 Score=60.79 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhcC-CCCCCCCcEEE-EcCCcH--H-HHHHHhhcC--CCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 9 AALVEAVRIMTGL-PFQVSPKRITV-STVGIV--H-AINKFHSDL--PGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 9 ~~l~~~l~~lk~~-~i~~~~~~~~v-~T~G~~--~-~~~~l~~~~--~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
+.+.++++.+++. |+ ..+.+ +|++.. + .++.+.+.+ . ..+.+++.+.+++.++++. +.++.++++
T Consensus 71 ~~l~~Ll~~l~~~~gi----~~ir~~~~~p~~l~~e~l~~l~~~g~~~-~~l~i~lqs~s~~vl~~m~---r~~t~e~~~ 142 (304)
T 2qgq_A 71 QALPDLLRRLNSLNGE----FWIRVMYLHPDHLTEEIISAMLELDKVV-KYFDVPVQHGSDKILKLMG---RTKSSEELK 142 (304)
T ss_dssp CCHHHHHHHHHTSSSS----CEEEECCCCGGGCCHHHHHHHHHCTTBC-CEEECCCBCSCHHHHHHTT---CCSCHHHHH
T ss_pred HHHHHHHHHHHhcCCC----cEEEEeeeecccCCHHHHHHHHhCCCCc-cEEEEecccCCHHHHHHhC---CCCCHHHHH
Confidence 3477888888765 43 24555 355432 3 577777665 4 3788999999999999864 356789999
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCC-CCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGV-NDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGi-NDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
+.++.+.+. ...+.+++-+|-|+ +++++++.++++|+++++. .+.+.+|.|..
T Consensus 143 ~~i~~l~~~-~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~p 197 (304)
T 2qgq_A 143 KMLSSIRER-FPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEE 197 (304)
T ss_dssp HHHHHHHHH-CTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC--
T ss_pred HHHHHHHhh-CCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCC
Confidence 999866553 34578888899898 8999999999999999874 78999999874
No 13
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=95.84 E-value=1.4e-05 Score=70.80 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=87.6
Q ss_pred CccCCCH--HH-HHHHHHHhhcCCCCCCCCcEEEEcCCcHH--HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC
Q 028700 2 GEPLNNY--AA-LVEAVRIMTGLPFQVSPKRITVSTVGIVH--AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP 76 (205)
Q Consensus 2 GEPllq~--~~-l~~~l~~lk~~~i~~~~~~~~v~T~G~~~--~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~ 76 (205)
||++.+. ++ +.+++..||+.|+ |.+++|++..+ .+++..++. + .+ ++.+++.|..+|+.-..
T Consensus 115 ge~fg~~~g~~~~~kl~~aLk~lGf-----~~v~dT~~~ad~~~~ee~~e~~-~-~~----k~~~~~~~p~~Ts~CP~-- 181 (421)
T 1hfe_L 115 GDAFGMPVGSVTTGKMLAALQKLGF-----AHCWDTEFTADVTIWEEGSEFV-E-RL----TKKSDMPLPQFTSCCPG-- 181 (421)
T ss_dssp GGGGTCCTTCCCHHHHHHHHHHHTC-----SEECCHHHHHHHHHHHHHHHHH-H-HH----TTSSCSCSSEECCCCHH--
T ss_pred HHHhCCCcccccHHHHHHHHHhhcC-----CccccccccchHHHHHHHHHHH-H-HH----hhcCcccCcccccCCHH--
Confidence 7888764 55 6778888887788 89999998765 345544442 1 22 56677778888874211
Q ss_pred HHHHH-----HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-ceEEEeecCC-----CCCC---CCccC
Q 028700 77 LEKLM-----NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ-VVVNLIPFNP-----IGSV---SQFRT 142 (205)
Q Consensus 77 ~~~i~-----~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~-~~v~lip~~~-----~g~~---~~~~~ 142 (205)
+-+.. +++. ++...+.+++++.++||+++|+++++ .+.+ ..|.++|||. .++. ..++.
T Consensus 182 wv~~~e~~~p~ll~-~ls~~~sP~~i~~~lik~~~~~~~~~-------~~~~i~~V~I~PC~aKK~Ea~r~~~~~~~~~~ 253 (421)
T 1hfe_L 182 WQKYAETYYPELLP-HFSTCKSPIGMNGALAKTYGAERMKY-------DPKQVYTVSIMPCIAKKYEGLRPELKSSGMRD 253 (421)
T ss_dssp HHHHHHHHCGGGGG-GBCSBCCHHHHHHHHHTTHHHHHHTC-------CGGGEEEEEEESCSHHHHHHTCTTCCTTSSCS
T ss_pred HHHHHHHhhHHHHh-hccCCCCCceeehhhhchhhhhhcCC-------ChhhEEEEEEeCCcchHHHhcCccccccCCCC
Confidence 11111 1232 33345779999999999999876653 2233 3689999997 1111 11123
Q ss_pred CcH-HHHHHHHHHHHhcCCceE
Q 028700 143 SSD-DKVSSFQKILRGSYNIRT 163 (205)
Q Consensus 143 ~~~-e~l~~~~~~l~~~~Gi~~ 163 (205)
++. ...+++.++|+ +.|++.
T Consensus 254 vD~vlT~~El~~~~~-~~gi~~ 274 (421)
T 1hfe_L 254 IDATLTTRELAYMIK-KAGIDF 274 (421)
T ss_dssp CCEEEEHHHHHHHHH-HTTCCG
T ss_pred CCeeeeHHHHHHHHH-HcCCCc
Confidence 433 45677788888 688864
No 14
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=92.81 E-value=0.52 Score=40.79 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEY 87 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~ 87 (205)
+.+.++|+.+.+.+- -.+.+.|=+.. ..+..+...+. +.+.+||.+ ++..+++-|. ..+.+.=+++++++
T Consensus 179 ~ltr~~le~l~~~~~----~~v~i~TKs~lid~L~~l~~~~~-v~V~~Sitt--~~l~r~~EP~--aps~~~RL~Ai~~l 249 (368)
T 4fhd_A 179 HSLKKAIEFIGATDY----GRLRFVTKYEHVDHLLDARHNGK-TRFRFSINS--RYVINHFEPG--TSSFDGRLAAARKV 249 (368)
T ss_dssp CHHHHHHHHHHHCSS----EEEEEEESCCCCGGGTTCCCTTC-EEEEEEECC--HHHHHHHCTT--SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCC----ceEEEEeCCcCHHHHHhcCcCCc-eEEEEEEcC--HHHHHHcCCC--CCCHHHHHHHHHHH
Confidence 345566666665411 14777775443 32333322332 566778864 7788888765 44677888888877
Q ss_pred HHhcCCcEEEEE-EEeCCCCCCHHHHHHHHHHHh
Q 028700 88 QKNSQQKIFIEY-IMLDGVNDEEQHAHQLGKLLE 120 (205)
Q Consensus 88 ~~~~~~~V~ir~-~lIpGiNDs~e~i~~l~~~l~ 120 (205)
.+ .|.+|.+.+ |+||+ +|.+++..++++-+.
T Consensus 250 ~~-aGipv~v~iaPIiP~-~~~~e~y~~lle~l~ 281 (368)
T 4fhd_A 250 AG-AGYKLGFVVAPIYRH-EGWERGYFELFQELA 281 (368)
T ss_dssp HH-TTCEEEEEEEEECCC-TTHHHHHHHHHHHHH
T ss_pred HH-CCCeEEEEEeCcCCC-CCCHHHHHHHHHHHH
Confidence 66 688887664 88998 555667777776444
No 15
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=78.65 E-value=14 Score=25.63 Aligned_cols=73 Identities=14% Similarity=0.366 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKIL 155 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l 155 (205)
+..++.+.++++.+..+..+.+ +++ |+.|-++.-+.|+++++..|-+|-|.+ +...+++|..-.
T Consensus 34 spqelkdsieelvkkynativv--vvv----ddkewaekairfvkslgaqvliiiydq----------dqnrleefsrev 97 (134)
T 2l69_A 34 SPQELKDSIEELVKKYNATIVV--VVV----DDKEWAEKAIRFVKSLGAQVLIIIYDQ----------DQNRLEEFSREV 97 (134)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEE--EEC----SSHHHHHHHHHHHHHHCCCCEEEEECS----------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCeEEE--EEE----ccHHHHHHHHHHHHhcCCeEEEEEEeC----------chhHHHHHHHHH
Confidence 4677888898887766655443 333 678889999999999998776776643 346677777667
Q ss_pred HhcCCceEEe
Q 028700 156 RGSYNIRTTV 165 (205)
Q Consensus 156 ~~~~Gi~~~i 165 (205)
+ +.|+.+..
T Consensus 98 r-rrgfevrt 106 (134)
T 2l69_A 98 R-RRGFEVRT 106 (134)
T ss_dssp H-HTTCCEEE
T ss_pred H-hcCceEEE
Confidence 7 67777644
No 16
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=72.12 E-value=19 Score=28.26 Aligned_cols=86 Identities=7% Similarity=0.060 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEe---ecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVS---LHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~s---lk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..+....+| .|-+| ++.+..+ .....+++
T Consensus 141 ~~~~~~~~l~~L~~~G~-----~ialDdfG~g~s~l~~L~~l~~d-~iKiD~~~v~~~~~~-----------~~~~~~l~ 203 (250)
T 4f3h_A 141 HLRNAQQFLASVSAMGC-----KVGLEQFGSGLDSFQLLAHFQPA-FLKLDRSITGDIASA-----------RESQEKIR 203 (250)
T ss_dssp SHHHHHHHHHHHHTTTC-----EEEEEEETSSTHHHHHHTTSCCS-EEEECHHHHTTTTTC-----------SHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-----EEEEeCCCCCchHHHHHhhCCCC-EEEECHHHHHhHhcC-----------hhhHHHHH
Confidence 45678888999998888 8999876654 345566555443 56666 3332211 12335666
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHH
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 115 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l 115 (205)
.+..+++..+.+| +..||.+ +++++.+
T Consensus 204 ~i~~~a~~l~~~v-----iaeGVEt-~~~~~~l 230 (250)
T 4f3h_A 204 EITSRAQPTGILT-----VAEFVAD-AQSMSSF 230 (250)
T ss_dssp HTHHHHHHHTCEE-----EECCCCC-HHHHHHH
T ss_pred HHHHHHHHcCCEE-----EEeccCC-HHHHHHH
Confidence 6666666667554 4678855 5554433
No 17
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=65.55 E-value=31 Score=27.11 Aligned_cols=94 Identities=7% Similarity=0.104 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..+....+| .|-+|-.. -+.+. .......+++.+.
T Consensus 137 ~~~~~~~~l~~l~~~G~-----~ialDdfG~g~ssl~~L~~l~~d-~iKiD~~~-----v~~~~---~~~~~~~~~~~i~ 202 (259)
T 3s83_A 137 DPERAAVILKTLRDAGA-----GLALDDFGTGFSSLSYLTRLPFD-TLKIDRYF-----VRTMG---NNAGSAKIVRSVV 202 (259)
T ss_dssp CHHHHHHHHHHHHHHTC-----EEEEECC---CHHHHHHHHSCCC-EEEECHHH-----HHHTT---TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-----EEEEECCCCCchhHHHHHhCCCC-EEEECHHH-----Hhhhh---cCchHHHHHHHHH
Confidence 45677888888888888 7999877654 345555444433 45555211 11111 1112234666666
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
.+++..+.+| +..||.+ ++++ ++++.+++
T Consensus 203 ~~a~~~g~~v-----iaeGVEt-~~~~----~~l~~lG~ 231 (259)
T 3s83_A 203 KLGQDLDLEV-----VAEGVEN-AEMA----HALQSLGC 231 (259)
T ss_dssp HHHHHTTCEE-----EECCCCS-HHHH----HHHHHHTC
T ss_pred HHHHHCCCeE-----EEEeCCC-HHHH----HHHHhcCC
Confidence 6666667544 4678855 4444 45566664
No 18
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Probab=65.32 E-value=5.7 Score=28.22 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=40.1
Q ss_pred eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCc---eEEecccc----c--cccccccccccccccc
Q 028700 125 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNI---RTTVRKQM----G--QDISGACGQLVVNLPD 186 (205)
Q Consensus 125 ~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi---~~~i~~~~----g--~d~~~~Cgql~~~~~~ 186 (205)
.|.-||...+- ...-+.-+++.++++.+.++ ..|+ ++.++... | =.+.+||+.|+|.+.-
T Consensus 13 ~v~~IPi~~I~-~p~~~~~d~~kv~eL~~SI~-~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~hRl~A~k~L 81 (110)
T 1xw3_A 13 AVHNVPLSVLI-RPLPSVLDPAKVQSLVDTIR-EDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQL 81 (110)
T ss_dssp EEEEEEGGGEE-CCSCCCCCHHHHHHHHHHHH-HCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHT
T ss_pred eEEEeCHHHcc-CCCCCccCHHHHHHHHHHHH-hcCCCCCCeEEEEeccCCCCCcEEEEcchHHHHHHHHc
Confidence 56667877763 22223567899999999998 6885 45554322 2 2688999998876543
No 19
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=61.16 E-value=77 Score=26.97 Aligned_cols=114 Identities=9% Similarity=0.105 Sum_probs=60.1
Q ss_pred CccCCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHH
Q 028700 2 GEPLNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLM 81 (205)
Q Consensus 2 GEPllq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~ 81 (205)
|=|... +...++++.+++.+.. ..++.-.-+....+++..+.+.+ .+.+.+.+ ++ .|.+-.+.+....++.+.
T Consensus 45 g~p~~~-~~~~~~~~~i~~~~~~---~~v~~~~r~~~~di~~a~~~g~~-~v~i~~~~-s~-~~~~~~~~s~~e~l~~~~ 117 (382)
T 2ztj_A 45 TTPVAS-PQSRKDAEVLASLGLK---AKVVTHIQCRLDAAKVAVETGVQ-GIDLLFGT-SK-YLRAPHGRDIPRIIEEAK 117 (382)
T ss_dssp CCTTSC-HHHHHHHHHHHTSCCS---SEEEEEEESCHHHHHHHHHTTCS-EEEEEECC----------CCCHHHHHHHHH
T ss_pred cCCcCC-HHHHHHHHHHHhcCCC---cEEEEEcccChhhHHHHHHcCCC-EEEEEecc-CH-HHHHHhCCCHHHHHHHHH
Confidence 445555 3456777887765442 12332222334457777777754 45454433 32 333333333222345555
Q ss_pred HHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 82 NALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 82 ~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
+.++ ++++.|..+.+++-+-.++-.+++.+.++++.+.+. +
T Consensus 118 ~~v~-~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a 158 (382)
T 2ztj_A 118 EVIA-YIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-V 158 (382)
T ss_dssp HHHH-HHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-C
T ss_pred HHHH-HHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-c
Confidence 5565 445567445555555666666788888888888777 5
No 20
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=56.18 E-value=76 Score=26.00 Aligned_cols=78 Identities=12% Similarity=0.236 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQ 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+.. +-++.-++++.+++.++ .+=++ -|+ |..|+.+.+.+ |+
T Consensus 67 s~~Er~~v~~~~~~~~~g----rvpviaGvg~~st~~ai~la~~A~~~Gadavlv~--~P~-----y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 67 TAAEKLELLKAVREEVGD----RAKLIAGVGTNNTRTSVELAEAAASAGADGLLVV--TPY-----YSKPSQEGLLAHFG 135 (304)
T ss_dssp CHHHHHHHHHHHHHHHTT----TSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCC-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHH
Confidence 344444444433333333 4577777765 45667778888888885 33222 122 33345555554 44
Q ss_pred HHHHhcCCceEEe
Q 028700 153 KILRGSYNIRTTV 165 (205)
Q Consensus 153 ~~l~~~~Gi~~~i 165 (205)
.+.+ ..++++.+
T Consensus 136 ~ia~-a~~lPiil 147 (304)
T 3cpr_A 136 AIAA-ATEVPICL 147 (304)
T ss_dssp HHHH-HCCSCEEE
T ss_pred HHHH-hcCCCEEE
Confidence 5555 56776655
No 21
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=55.18 E-value=82 Score=25.46 Aligned_cols=128 Identities=15% Similarity=0.054 Sum_probs=70.0
Q ss_pred HHHHHHHhhcC-CCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhh-cCCCCCCCHHHHHHHHHHHH
Q 028700 11 LVEAVRIMTGL-PFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQI-MPAARAFPLEKLMNALKEYQ 88 (205)
Q Consensus 11 l~~~l~~lk~~-~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i-~~~~~~~~~~~i~~~l~~~~ 88 (205)
..++++.+++. +. .+++-+ .....+++..+.+.+ .+.+++.+.+ .|.+. ...+....++.+.+.++ ++
T Consensus 60 ~~e~~~~i~~~~~~-----~v~~l~-~n~~~i~~a~~~G~~-~V~i~~~~S~--~h~~~~~~~~~~e~~~~~~~~v~-~a 129 (295)
T 1ydn_A 60 SREVMAGIRRADGV-----RYSVLV-PNMKGYEAAAAAHAD-EIAVFISASE--GFSKANINCTIAESIERLSPVIG-AA 129 (295)
T ss_dssp HHHHHHHSCCCSSS-----EEEEEC-SSHHHHHHHHHTTCS-EEEEEEESCH--HHHHHHTSSCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhCCCC-----EEEEEe-CCHHHHHHHHHCCCC-EEEEEEecCH--HHHHHHcCCCHHHHHHHHHHHHH-HH
Confidence 44666777554 22 443333 224567788777764 6777776533 33332 22222223444444555 55
Q ss_pred HhcCCcEEEEEEEeCC----CCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 89 KNSQQKIFIEYIMLDG----VNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 89 ~~~~~~V~ir~~lIpG----iNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
++.|..|...+-.+-| .-.+++++.++++.+.+.++ .+.+ + ...| . .++.++.++.+.++
T Consensus 130 ~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l-~-Dt~G-~-----~~P~~~~~lv~~l~ 194 (295)
T 1ydn_A 130 INDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSL-G-DTIG-R-----GTPDTVAAMLDAVL 194 (295)
T ss_dssp HHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEE-E-ETTS-C-----CCHHHHHHHHHHHH
T ss_pred HHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEe-c-CCCC-C-----cCHHHHHHHHHHHH
Confidence 5578777644444321 22357788888888888885 4543 3 3454 1 34566666665555
No 22
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=54.41 E-value=54 Score=27.09 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQK 153 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~ 153 (205)
+.++-.+.++...+..+. |+|+|-|+..+-++.-++++.++..++ .+=++ -|+ |..|+.+.+.+ |+.
T Consensus 63 s~eEr~~vi~~~~~~~~g----rvpViaGvg~st~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~ 131 (314)
T 3d0c_A 63 TIEEAKQVATRVTELVNG----RATVVAGIGYSVDTAIELGKSAIDSGADCVMIH--QPV-----HPYITDAGAVEYYRN 131 (314)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSEEEEEECSSHHHHHHHHHHHHHTTCSEEEEC--CCC-----CSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCeEEecCCcCHHHHHHHHHHHHHcCCCEEEEC--CCC-----CCCCCHHHHHHHHHH
Confidence 444444444444433333 456777777666777888999988885 33222 122 33345555554 445
Q ss_pred HHHhcCCceEEecc
Q 028700 154 ILRGSYNIRTTVRK 167 (205)
Q Consensus 154 ~l~~~~Gi~~~i~~ 167 (205)
+.+ ..++++.+=+
T Consensus 132 va~-a~~lPiilYn 144 (314)
T 3d0c_A 132 IIE-ALDAPSIIYF 144 (314)
T ss_dssp HHH-HSSSCEEEEE
T ss_pred HHH-hCCCCEEEEe
Confidence 555 5677766544
No 23
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=53.50 E-value=78 Score=25.73 Aligned_cols=60 Identities=10% Similarity=0.226 Sum_probs=30.7
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHHHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~Gi~~~i 165 (205)
|+|+|-|+.. +-++.-++++.++..++ .+=++ -|+ |..|+.+.+.+ |+.+.+ ..++++.+
T Consensus 69 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~va~-a~~lPiil 131 (294)
T 2ehh_A 69 RIKVIAGTGGNATHEAVHLTAHAKEVGADGALVV--VPY-----YNKPTQRGLYEHFKTVAQ-EVDIPIII 131 (294)
T ss_dssp SSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHH-HCCSCEEE
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 3566666654 44556667777777774 23222 121 22345555444 344444 45665544
No 24
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=53.10 E-value=91 Score=25.33 Aligned_cols=122 Identities=8% Similarity=0.032 Sum_probs=70.9
Q ss_pred HHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCC----CCCHHHHH
Q 028700 38 VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGV----NDEEQHAH 113 (205)
Q Consensus 38 ~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGi----NDs~e~i~ 113 (205)
...+++..+.+.+ .+.+.+.+.+...++++ +.+....++.+.+.++ ++++.|.+|.+.+...=|- -.+.+++.
T Consensus 83 ~~~i~~a~~ag~~-~v~i~~~~sd~~~~~~~-~~~~~e~l~~~~~~i~-~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~ 159 (298)
T 2cw6_A 83 LKGFEAAVAAGAK-EVVIFGAASELFTKKNI-NCSIEESFQRFDAILK-AAQSANISVRGYVSCALGCPYEGKISPAKVA 159 (298)
T ss_dssp HHHHHHHHHTTCS-EEEEEEESCHHHHHHHH-SCCHHHHHHHHHHHHH-HHHHTTCEEEEEEETTTCBTTTBSCCHHHHH
T ss_pred HHhHHHHHHCCCC-EEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHH-HHHHCCCeEEEEEEEEeeCCcCCCCCHHHHH
Confidence 4568888888764 67787766655444444 2333334566666666 4555787777665433110 13577889
Q ss_pred HHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcC-C--ceEEeccccc
Q 028700 114 QLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSY-N--IRTTVRKQMG 170 (205)
Q Consensus 114 ~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~-G--i~~~i~~~~g 170 (205)
++++.+.+.++ .|.+- ..+| ..++.++.++.+.+++.. + +.++..+.+|
T Consensus 160 ~~~~~~~~~Ga~~i~l~--DT~G------~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~G 212 (298)
T 2cw6_A 160 EVTKKFYSMGCYEISLG--DTIG------VGTPGIMKDMLSAVMQEVPLAALAVHCHDTYG 212 (298)
T ss_dssp HHHHHHHHTTCSEEEEE--ETTS------CCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTS
T ss_pred HHHHHHHHcCCCEEEec--CCCC------CcCHHHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence 99999998885 44432 2233 235666666666554233 2 4455555555
No 25
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=52.46 E-value=74 Score=26.03 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=32.7
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHHHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~Gi~~~i 165 (205)
|+|+|-|+.. +-++.-++++.+++.++ .+=++ -|+ |..|+.+.+.+ |+.+.+ ..++++.+
T Consensus 81 rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~va~-a~~lPiil 143 (301)
T 1xky_A 81 RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV--APY-----YNKPSQEGMYQHFKAIAE-STPLPVML 143 (301)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHH-TCSSCEEE
T ss_pred CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEc--CCC-----CCCCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 4567777764 44566778888888874 23222 121 23345555554 444444 45666554
No 26
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=52.33 E-value=41 Score=27.81 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc-eEEEe-ecCCCCCCCCccCCcHHHHHHH-H
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV-VVNLI-PFNPIGSVSQFRTSSDDKVSSF-Q 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~-~v~li-p~~~~g~~~~~~~~~~e~l~~~-~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+..+-++.-++++.++..++ .+=++ || |..|+.+.+.++ +
T Consensus 63 s~eEr~~v~~~~v~~~~g----rvpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P~--------y~~~s~~~l~~~f~ 130 (316)
T 3e96_A 63 SLEEAKEEVRRTVEYVHG----RALVVAGIGYATSTAIELGNAAKAAGADAVMIHMPI--------HPYVTAGGVYAYFR 130 (316)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCCC--------CSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCCC--------CCCCCHHHHHHHHH
Confidence 444444444444443333 234555554466777888888888875 33222 33 233455555554 4
Q ss_pred HHHHhcCCceEEec
Q 028700 153 KILRGSYNIRTTVR 166 (205)
Q Consensus 153 ~~l~~~~Gi~~~i~ 166 (205)
.+.+ ..++++.+=
T Consensus 131 ~va~-a~~lPiilY 143 (316)
T 3e96_A 131 DIIE-ALDFPSLVY 143 (316)
T ss_dssp HHHH-HHTSCEEEE
T ss_pred HHHH-hCCCCEEEE
Confidence 4444 456666543
No 27
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=51.09 E-value=67 Score=26.07 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=32.1
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHHHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~Gi~~~i 165 (205)
|+|+|-|+.. +-++..++++.++..++ .+=++ -|+ |..|+.+.+.+ |+.+.+ ..++++.+
T Consensus 69 r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~ia~-a~~lPiil 131 (289)
T 2yxg_A 69 RVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSI--TPY-----YNKPTQEGLRKHFGKVAE-SINLPIVL 131 (289)
T ss_dssp SSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHH-HCSSCEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 4567777764 44566677888777774 23222 121 22345555544 444444 45666554
No 28
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*
Probab=50.62 E-value=12 Score=26.94 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=38.4
Q ss_pred eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCce---EEecc---cc-c--cccccccccccccc
Q 028700 125 VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIR---TTVRK---QM-G--QDISGACGQLVVNL 184 (205)
Q Consensus 125 ~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~---~~i~~---~~-g--~d~~~~Cgql~~~~ 184 (205)
.|.-||...+- ....+..+++.++++.+.++ ..|+. +.++. .. | =+..+||+.|.|..
T Consensus 24 ~i~~IPl~~I~-~p~~r~~d~~kv~eL~eSI~-~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~hRleA~k 90 (121)
T 1yzs_A 24 AVHNVPLSVLI-RPLPSVLDPAKVQSLVDTIR-EDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQ 90 (121)
T ss_dssp CEEEEEGGGEE-CCCCCCCCHHHHHHHHHHHH-HCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHH
T ss_pred eEEEeeHHHee-CCCCCcCCHHHHHHHHHHHH-hcCCCCCCeEEEEeccCCCCceEEEEecchHHHHHH
Confidence 56778888874 33234578899999999988 67753 34432 22 2 26778888887654
No 29
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=50.18 E-value=87 Score=26.88 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 5 LNNYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 5 llq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
+.+.+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+|-..+..-.. ......+++.
T Consensus 153 ~~~~~~~~~~l~~Lr~~G~-----~ialDDFG~g~ssl~~L~~l~~d-~iKID~s~v~~~~~--------~~~~~~il~~ 218 (431)
T 2bas_A 153 EGDIEQLYHMLAYYRTYGI-----KIAVDNIGKESSNLDRIALLSPD-LLKIDLQALKVSQP--------SPSYEHVLYS 218 (431)
T ss_dssp CSCHHHHHHHHHHHHTTTC-----EEEEEEETTTBCCHHHHHHHCCS-EEEEECTTTC------------CCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHCCC-----EEEEECCCCCcHHHHHHHhCCCC-EEEECHHHHhhhhc--------CHhHHHHHHH
Confidence 3467889999999999988 8999876543 234455544433 57687665542211 1123456777
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
+..+++..|.+| +..||-+ +++++ +++.++
T Consensus 219 ii~la~~lg~~v-----vAEGVEt-~~q~~----~l~~lG 248 (431)
T 2bas_A 219 ISLLARKIGAAL-----LYEDIEA-NFQLQ----YAWRNG 248 (431)
T ss_dssp HHHHHHHHTCEE-----EEECCCS-HHHHH----HHHHTT
T ss_pred HHHHHHHcCCEE-----EEEeCCC-HHHHH----HHHHcC
Confidence 766666677654 4667754 44444 555665
No 30
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=48.96 E-value=41 Score=27.39 Aligned_cols=92 Identities=7% Similarity=0.102 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEe---ecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVS---LHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~s---lk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+| +..+..+. ....+++
T Consensus 161 ~~~~~~~~l~~Lr~~G~-----~ialDDFGtG~ssl~~L~~l~~d-~iKID~sfv~~i~~~~-----------~~~~iv~ 223 (294)
T 2r6o_A 161 MTDEVRTCLDALRARGV-----RLALDDFGTGYSSLSYLSQLPFH-GLKIDQSFVRKIPAHP-----------SETQIVT 223 (294)
T ss_dssp CCHHHHHHHHHHHHHTC-----EEEEEEETSSCBCHHHHHHSCCC-EEEECHHHHTTTTTSH-----------HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC-----EEEEECCCCCchhHHHHHhCCCC-EEEECHHHHhhhhcCh-----------HHHHHHH
Confidence 45677888888888777 7888765532 123333333333 45555 22222111 1234566
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 125 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~ 125 (205)
.+-.+++..+.+| +..||-+ +++ .++++.+++.
T Consensus 224 ~ii~la~~lg~~v-----vAEGVEt-~~q----~~~l~~lG~d 256 (294)
T 2r6o_A 224 TILALARGLGMEV-----VAEGIET-AQQ----YAFLRDRGCE 256 (294)
T ss_dssp HHHHHHHHTTCEE-----EECCCCS-HHH----HHHHHHTTCC
T ss_pred HHHHHHHHCCCEE-----EEecCCc-HHH----HHHHHHcCCC
Confidence 6666666667544 4678754 443 4456677643
No 31
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=48.91 E-value=58 Score=25.63 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEe---ecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVS---LHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~s---lk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..+....+| .|-+| +..+..+. ...++.
T Consensus 151 ~~~~~~~~l~~L~~~G~-----~ialDDfG~g~ssl~~L~~l~~d-~iKiD~~~v~~~~~~~------------~~~~l~ 212 (268)
T 3hv8_A 151 YLKQAKQLTQGLATLHC-----QAAISQFGCSLNPFNALKHLTVQ-FIKIDGSFVQDLNQVE------------NQEILK 212 (268)
T ss_dssp THHHHHHHHHHHHHTTC-----EEEEEEETCSSSTTGGGGTCCCS-EEEECGGGGSSTTSHH------------HHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-----EEEEeCCCCChHHHHHHHhCCCC-EEEECHHHHHhhhcCh------------hHHHHH
Confidence 45677888888888888 7888865543 234444444333 56666 33332221 124455
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHH
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQL 115 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l 115 (205)
.+-..++..+..| ++.||.+ +++++.+
T Consensus 213 ~ii~~~~~~~~~v-----iaeGVEt-~~~~~~l 239 (268)
T 3hv8_A 213 GLIAELHEQQKLS-----IVPFVES-ASVLATL 239 (268)
T ss_dssp HHHHHHHHTTCEE-----EECCCCS-HHHHHHH
T ss_pred HHHHHHHHcCCCE-----EEEeeCC-HHHHHHH
Confidence 5555555566544 5678854 5555443
No 32
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=48.75 E-value=85 Score=25.47 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=31.5
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHH-HHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~-~~l~~~~Gi~~~i 165 (205)
|+|+|-|+.. +-++.-++++.++..++ .+=++ -|+ |..|+.+.+.++. .+.+ ..++++.+
T Consensus 70 r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~ia~-a~~lPiil 132 (292)
T 2ojp_A 70 RIPVIAGTGANATAEAISLTQRFNDSGIVGCLTV--TPY-----YNRPSQEGLYQHFKAIAE-HTDLPQIL 132 (292)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHT-TCSSCEEE
T ss_pred CCcEEEecCCccHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 3466666654 44556667777777774 23222 121 2334555555444 4444 45666554
No 33
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=48.37 E-value=69 Score=26.28 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=30.9
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHH-HHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQ-KILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~-~~l~~~~Gi~~~i 165 (205)
|+|+|-|+.. +-++..++++.+++.++ .+=++ -|+ |..|+.+.+.++. .+.+ ..++++.+
T Consensus 81 rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~va~-a~~lPiil 143 (306)
T 1o5k_A 81 KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVV--TPY-----YNKPTQEGLYQHYKYISE-RTDLGIVV 143 (306)
T ss_dssp SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHT-TCSSCEEE
T ss_pred CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHHHHHH-hCCCCEEE
Confidence 3566666654 44556667777777764 23222 121 2334555555443 3344 45565544
No 34
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=47.67 E-value=87 Score=25.83 Aligned_cols=79 Identities=11% Similarity=0.236 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQ 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+.. +-++.-++++.+++.++ .+=++ -|+ |..|+.+.+.+ |+
T Consensus 74 s~~Er~~v~~~~v~~~~g----rvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~ 142 (314)
T 3qze_A 74 DVEEHIQVIRRVVDQVKG----RIPVIAGTGANSTREAVALTEAAKSGGADACLLV--TPY-----YNKPTQEGMYQHFR 142 (314)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCC-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEc--CCC-----CCCCCHHHHHHHHH
Confidence 344444444433333333 3566667764 45567778888888874 33232 122 22345555544 44
Q ss_pred HHHHhcCCceEEec
Q 028700 153 KILRGSYNIRTTVR 166 (205)
Q Consensus 153 ~~l~~~~Gi~~~i~ 166 (205)
.+.+ ..++++.+=
T Consensus 143 ~va~-a~~lPiilY 155 (314)
T 3qze_A 143 HIAE-AVAIPQILY 155 (314)
T ss_dssp HHHH-HSCSCEEEE
T ss_pred HHHH-hcCCCEEEE
Confidence 4455 567766553
No 35
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=47.40 E-value=79 Score=26.12 Aligned_cols=78 Identities=6% Similarity=0.039 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHH-H
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSF-Q 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~-~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+. .+-++.-++++.++..++ .+=++ -|+ |..|+.+.+.++ +
T Consensus 75 s~~Er~~v~~~~v~~~~g----rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~ 143 (315)
T 3na8_A 75 SDPEWDEVVDFTLKTVAH----RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVL--PIS-----YWKLNEAEVFQHYR 143 (315)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEC--CCC-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHH
Confidence 344444444444443333 456666665 345566778888888874 33221 121 223455555444 4
Q ss_pred HHHHhcCCceEEe
Q 028700 153 KILRGSYNIRTTV 165 (205)
Q Consensus 153 ~~l~~~~Gi~~~i 165 (205)
.+.+ ..++++.+
T Consensus 144 ~va~-a~~lPiil 155 (315)
T 3na8_A 144 AVGE-AIGVPVML 155 (315)
T ss_dssp HHHH-HCSSCEEE
T ss_pred HHHH-hCCCcEEE
Confidence 4444 46666654
No 36
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=46.99 E-value=95 Score=25.28 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQ 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+.. +-++..++++.+++.++ .+=++| |+ |..|+.+.+.+ |+
T Consensus 58 s~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~--P~-----y~~~~~~~l~~~f~ 126 (297)
T 3flu_A 58 SVEEHTAVIEAVVKHVAK----RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVV--PY-----YNKPSQEGIYQHFK 126 (297)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEC--CC-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECC--CC-----CCCCCHHHHHHHHH
Confidence 344444444433333333 3556666653 45667778888888874 332221 21 22345555444 44
Q ss_pred HHHHhcCCceEEec
Q 028700 153 KILRGSYNIRTTVR 166 (205)
Q Consensus 153 ~~l~~~~Gi~~~i~ 166 (205)
.+.+ ..++++.+=
T Consensus 127 ~va~-a~~lPiilY 139 (297)
T 3flu_A 127 TIAE-ATSIPMIIY 139 (297)
T ss_dssp HHHH-HCCSCEEEE
T ss_pred HHHH-hCCCCEEEE
Confidence 4445 466666543
No 37
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=45.79 E-value=79 Score=25.66 Aligned_cols=59 Identities=12% Similarity=0.296 Sum_probs=30.6
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHHHHHhcCCceEEe
Q 028700 99 YIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTV 165 (205)
Q Consensus 99 ~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~Gi~~~i 165 (205)
+|+|-|+.. +-++.-++++.+++.++ .+=++ .|+ |..|+.+.+.+ |+.+.+ ..++++.+
T Consensus 71 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~-----y~~~~~~~l~~~f~~ia~-a~~lPiil 132 (291)
T 3tak_A 71 IPIIAGTGANSTREAIELTKAAKDLGADAALLV--TPY-----YNKPTQEGLYQHYKAIAE-AVELPLIL 132 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHH-HCCSCEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEc--CCC-----CCCCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 556666653 45566677777777764 23222 121 22344444444 444444 45666654
No 38
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=45.59 E-value=68 Score=26.20 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=30.5
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHHHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~Gi~~~i 165 (205)
|+|+|-|+.. +-++..++++.+++.++ .+=++ -|+ |..|+.+.+.+ |+.+.+ ..++++.+
T Consensus 69 rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~va~-a~~lPiil 131 (297)
T 2rfg_A 69 RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCV--AGY-----YNRPSQEGLYQHFKMVHD-AIDIPIIV 131 (297)
T ss_dssp SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEEC--CCT-----TTCCCHHHHHHHHHHHHH-HCSSCEEE
T ss_pred CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEc--CCC-----CCCCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 3566666654 44556667777777764 23221 121 23345555444 344444 45665544
No 39
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=45.44 E-value=91 Score=25.29 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=15.6
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
|+|+|-|+.. +-++..++++.++..++
T Consensus 69 r~pviaGvg~~~t~~ai~la~~A~~~Ga 96 (292)
T 2vc6_A 69 RVPVIAGAGSNSTAEAIAFVRHAQNAGA 96 (292)
T ss_dssp SSCBEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CCcEEEecCCccHHHHHHHHHHHHHcCC
Confidence 3456656554 34455667777776664
No 40
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=45.28 E-value=72 Score=25.95 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=17.0
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
|+|+|-|+.. +-++.-++++.+++.++
T Consensus 73 rvpviaGvg~~~t~~ai~la~~a~~~Ga 100 (293)
T 1f6k_A 73 QIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp SSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4566666654 44556667777777764
No 41
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=44.52 E-value=73 Score=25.92 Aligned_cols=73 Identities=7% Similarity=0.100 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhc-CCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHH
Q 028700 76 PLEKLMNALKEYQKNS-QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKI 154 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~-~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~ 154 (205)
+-+..++.++..++.. -.-|-|++ .-.++.+.++.++++..+.+| ++-||.+. ..|+.+++....+.
T Consensus 117 ~~~~~~~ll~~~l~~g~~dyIDvEl------~~~~~~~~~l~~~a~~~~~kv-I~S~Hdf~-----~tP~~~el~~~~~~ 184 (276)
T 3o1n_A 117 TTGQYIDLNRAAVDSGLVDMIDLEL------FTGDDEVKATVGYAHQHNVAV-IMSNHDFH-----KTPAAEEIVQRLRK 184 (276)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEEG------GGCHHHHHHHHHHHHHTTCEE-EEEEEESS-----CCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEC------cCCHHHHHHHHHHHHhCCCEE-EEEeecCC-----CCcCHHHHHHHHHH
Confidence 3445555665554421 12344442 112456677777766666555 56778764 22344555544444
Q ss_pred HHhcCCc
Q 028700 155 LRGSYNI 161 (205)
Q Consensus 155 l~~~~Gi 161 (205)
.. ++|-
T Consensus 185 ~~-~~Ga 190 (276)
T 3o1n_A 185 MQ-ELGA 190 (276)
T ss_dssp HH-HTTC
T ss_pred HH-HcCC
Confidence 44 3553
No 42
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=44.15 E-value=43 Score=27.89 Aligned_cols=116 Identities=6% Similarity=0.043 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+|- ..-+.+ .....-..+++++-
T Consensus 210 ~~~~~~~~l~~Lr~~G~-----~ialDDFGtG~ssl~~L~~lp~d-~iKID~-----sfv~~~---~~~~~~~~iv~~ii 275 (340)
T 4hjf_A 210 DPERAAVILKTLRDAGA-----GLALDDFGTGFSSLSYLTRLPFD-TLKIDR-----YFVRTM---GNNAGSAKIVRSVV 275 (340)
T ss_dssp SHHHHHHHHHHHHHHTC-----EEEEECTTSSSCGGGTGGGSCCS-EEEECH-----HHHHHT---TTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCC-----CccccCCCCCcchHHHHHhCCCC-hhcccH-----Hhhhcc---cCCHhHHHHHHHHH
Confidence 46677788888887777 7888876653 233334333333 454542 111111 11112234666766
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHH
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQK 153 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~ 153 (205)
.+++..|.+|+ ..||- ++++ .++++.+++. +++=-=+ .+|.+.+++..+.+
T Consensus 276 ~la~~lg~~vv-----AEGVE-t~~q----~~~L~~lG~d--~~QGy~~-----~~P~~~~~~~~~l~ 326 (340)
T 4hjf_A 276 KLGQDLDLEVV-----AEGVE-NAEM----AHALQSLGCD--YGQGFGY-----APALSPQEAEVYLN 326 (340)
T ss_dssp HHHHHHTCEEE-----EECCC-SHHH----HHHHHHTTCC--EEESTTT-----CCSBCHHHHHHHHH
T ss_pred HHHHHcCCEEE-----EEeCC-cHHH----HHHHHHcCCC--EeecCcc-----ccCCCHHHHHHHHH
Confidence 67776776554 56774 4444 4566777753 2222112 14556777766543
No 43
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=44.10 E-value=99 Score=25.52 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQ 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+.. +-++..++++.++..++ .+=++ -|+ |..|+.+.+.+ |+
T Consensus 73 s~~Er~~v~~~~v~~~~g----rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~--~P~-----y~~~~~~~l~~~f~ 141 (315)
T 3si9_A 73 THEEHKRIIELCVEQVAK----RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVV--TPY-----YNRPNQRGLYTHFS 141 (315)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCC-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHH
Confidence 344444444444333333 3566666653 45566777888887774 33222 121 22344444444 34
Q ss_pred HHHHhcCCceEEe
Q 028700 153 KILRGSYNIRTTV 165 (205)
Q Consensus 153 ~~l~~~~Gi~~~i 165 (205)
.+.+ ..++++.+
T Consensus 142 ~va~-a~~lPiil 153 (315)
T 3si9_A 142 SIAK-AISIPIII 153 (315)
T ss_dssp HHHH-HCSSCEEE
T ss_pred HHHH-cCCCCEEE
Confidence 4444 45666554
No 44
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=44.04 E-value=80 Score=26.30 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQ 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+.. +-++..++++.++..++ .+=++ -|+ |..|+.+.+.+ |+
T Consensus 85 s~eEr~~vi~~~ve~~~g----rvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~-----Y~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 85 TREERRRAIEAAATILRG----RRTLMAGIGALRTDEAVALAKDAEAAGADALLLA--PVS-----YTPLTQEEAYHHFA 153 (332)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEC--CCC-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHH
Confidence 344444444433333333 4567767654 44566778888888774 33222 121 33355555554 44
Q ss_pred HHHHhcCCceEEe
Q 028700 153 KILRGSYNIRTTV 165 (205)
Q Consensus 153 ~~l~~~~Gi~~~i 165 (205)
.+.+ ..++++.+
T Consensus 154 ~VA~-a~~lPiil 165 (332)
T 2r8w_A 154 AVAG-ATALPLAI 165 (332)
T ss_dssp HHHH-HCSSCEEE
T ss_pred HHHH-hcCCCEEE
Confidence 4455 56676655
No 45
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=43.09 E-value=76 Score=25.99 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=31.0
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HHHHHHhcCC-ceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQKILRGSYN-IRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~G-i~~~i 165 (205)
|+|+|-|+.. +-++.-++++.++..++ .+=++ -|+ |..|+.+.+.+ |+.+.+ ..+ +++.+
T Consensus 80 rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~~va~-a~~~lPiil 143 (303)
T 2wkj_A 80 KIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAV--TPF-----YYPFSFEEHCDHYRAIID-SADGLPMVV 143 (303)
T ss_dssp TSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCC-----SSCCCHHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEec--CCC-----CCCCCHHHHHHHHHHHHH-hCCCCCEEE
Confidence 4566666664 44556667777777764 23222 121 23345555544 444444 444 55544
No 46
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=42.89 E-value=1e+02 Score=25.23 Aligned_cols=13 Identities=0% Similarity=-0.179 Sum_probs=6.5
Q ss_pred HHHHHHHHHhcCC
Q 028700 111 HAHQLGKLLETFQ 123 (205)
Q Consensus 111 ~i~~l~~~l~~~~ 123 (205)
+.-++++.++..+
T Consensus 91 ~ai~la~~A~~~G 103 (309)
T 3fkr_A 91 VCAARSLRAQQLG 103 (309)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 3444555555554
No 47
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=42.32 E-value=1.1e+02 Score=25.09 Aligned_cols=79 Identities=8% Similarity=0.135 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCC-CCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHH-H
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVN-DEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSF-Q 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiN-Ds~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~-~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+. .+-++..++++.+++.++ .+=++ -|+ |..|+.+.+.++ +
T Consensus 66 t~~Er~~v~~~~~~~~~g----rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~-----y~~~s~~~l~~~f~ 134 (304)
T 3l21_A 66 TDGEKIELLRAVLEAVGD----RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV--TPY-----YSKPPQRGLQAHFT 134 (304)
T ss_dssp CHHHHHHHHHHHHHHHTT----TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCC-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCC-----CCCCCHHHHHHHHH
Confidence 344444444444443333 356777774 345567778888888774 33222 121 233455555554 4
Q ss_pred HHHHhcCCceEEec
Q 028700 153 KILRGSYNIRTTVR 166 (205)
Q Consensus 153 ~~l~~~~Gi~~~i~ 166 (205)
.+.+ ..++++.+=
T Consensus 135 ~va~-a~~lPiilY 147 (304)
T 3l21_A 135 AVAD-ATELPMLLY 147 (304)
T ss_dssp HHHT-SCSSCEEEE
T ss_pred HHHH-hcCCCEEEE
Confidence 4444 567766553
No 48
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=41.16 E-value=55 Score=28.70 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCHHhhhhhcCCC-C------CCCHHHHHHHHHHHHHhcCCcE-EEEEEEeCCCCCCHHHHHHHHHHHhc-CCceEEEee
Q 028700 60 PVQDVRCQIMPAA-R------AFPLEKLMNALKEYQKNSQQKI-FIEYIMLDGVNDEEQHAHQLGKLLET-FQVVVNLIP 130 (205)
Q Consensus 60 ~d~~~~~~i~~~~-~------~~~~~~i~~~l~~~~~~~~~~V-~ir~~lIpGiNDs~e~i~~l~~~l~~-~~~~v~lip 130 (205)
+|+.-|.-+.|.. . +..++..++-.+.|.. |..+ +++ ++. -+.+++.++++-+.. .+ ++++.
T Consensus 246 ~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~--GAD~if~E----~~~-~~~~ei~~f~~~v~~~~P--~~~La 316 (435)
T 3lg3_A 246 CDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP--YADLVWCE----TST-PDLALAKRFADAVHAQFP--GKLLA 316 (435)
T ss_dssp CCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG--GCSEEEEC----CSS-CCHHHHHHHHHHHHHHST--TCEEE
T ss_pred cccccchhhcccccccccccccCCHHHHHHHHHHHHc--cCCEEEec----CCC-CCHHHHHHHHHHhccccC--CeEEE
Confidence 5777777777621 1 1458888877777765 5544 433 333 257788888877764 33 45677
Q ss_pred cCCCCCCCCc-cCCcHHHHHHHHHHHHhcCCceEEec
Q 028700 131 FNPIGSVSQF-RTSSDDKVSSFQKILRGSYNIRTTVR 166 (205)
Q Consensus 131 ~~~~g~~~~~-~~~~~e~l~~~~~~l~~~~Gi~~~i~ 166 (205)
|+... ...| ...++++++.|.+-|. ++|+...+-
T Consensus 317 ~~~sP-sfnw~~~~~d~~~~~f~~eLa-~lG~~~v~~ 351 (435)
T 3lg3_A 317 YNCSP-SFNWKKNLTDQQIASFQDELS-AMGYKYQFI 351 (435)
T ss_dssp EECCS-SSCHHHHSCHHHHHHHHHHHH-HTTEEEEEE
T ss_pred eCCCC-CccccccCCHHHHHHHHHHHH-HcCCcEEEe
Confidence 87653 3333 2478999999999998 799877653
No 49
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=40.87 E-value=20 Score=24.44 Aligned_cols=26 Identities=0% Similarity=-0.234 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVH 39 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~ 39 (205)
+.+.++++.+++.|+ ++++-||+...
T Consensus 21 ~~~~~~l~~L~~~G~-----~~~i~S~~~~~ 46 (137)
T 2pr7_A 21 RRWRNLLAAAKKNGV-----GTVILSNDPGG 46 (137)
T ss_dssp HHHHHHHHHHHHTTC-----EEEEEECSCCG
T ss_pred ccHHHHHHHHHHCCC-----EEEEEeCCCHH
Confidence 558899999998887 89999988654
No 50
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=40.82 E-value=1e+02 Score=25.78 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHH-HH
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSS-FQ 152 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~-~~ 152 (205)
+.++-.+.++...+..+. |+|+|-|+.. +-++..++++.++..++ .+=++ -|+ |..|+.+.+.+ |+
T Consensus 82 s~eEr~~vi~~~ve~~~g----rvpViaGvg~~st~eai~la~~A~~~Gadavlv~--~P~-----Y~~~s~~~l~~~f~ 150 (343)
T 2v9d_A 82 GAEERKAIARFAIDHVDR----RVPVLIGTGGTNARETIELSQHAQQAGADGIVVI--NPY-----YWKVSEANLIRYFE 150 (343)
T ss_dssp CHHHHHHHHHHHHHHHTT----SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEE--CCS-----SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC--CCC-----CCCCCHHHHHHHHH
Confidence 344444444433333333 4677777763 45566778888888874 33222 122 23345555554 44
Q ss_pred HHHHhcCCceEEe
Q 028700 153 KILRGSYNIRTTV 165 (205)
Q Consensus 153 ~~l~~~~Gi~~~i 165 (205)
.+.+ ..++++.+
T Consensus 151 ~VA~-a~~lPiil 162 (343)
T 2v9d_A 151 QVAD-SVTLPVML 162 (343)
T ss_dssp HHHH-TCSSCEEE
T ss_pred HHHH-hcCCCEEE
Confidence 4455 56666654
No 51
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=40.16 E-value=68 Score=26.08 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=14.7
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
+|+|-|+.. +-++..++++.++..++
T Consensus 71 ~pvi~Gvg~~~t~~ai~la~~a~~~Ga 97 (291)
T 3a5f_A 71 IPVIAGTGSNNTAASIAMSKWAESIGV 97 (291)
T ss_dssp SCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CcEEEeCCcccHHHHHHHHHHHHhcCC
Confidence 455555543 34455566666666663
No 52
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=40.10 E-value=72 Score=27.02 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEe---ecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVS---LHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~s---lk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
..+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+| ++.+..+. ....+++
T Consensus 321 ~~~~~~~~~~~l~~~G~-----~ialDdfG~g~ssl~~L~~l~~d-~iKiD~~~v~~~~~~~-----------~~~~~~~ 383 (430)
T 3pjx_A 321 EQAVLEQLTRRLRELGF-----SLSLQRFGGRFSMIGNLARLGLA-YLKIDGSYIRAIDQES-----------DKRLFIE 383 (430)
T ss_dssp CHHHHHHHHHHHHHHTC-----EEEEEEECCCHHHHCTHHHHCCS-CEEECGGGTTTTTTCH-----------HHHHHHH
T ss_pred ccHHHHHHHHHHHHCCC-----EEEEeCCCCCchhHHHHHhCCCC-EEEECHHHHHhHhcCh-----------hhHHHHH
Confidence 34667778888888888 7999876653 223333333333 56676 33332221 1234566
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
.+..+++..+.+| +..||.+ ++++ ++++.+++
T Consensus 384 ~i~~~a~~l~~~v-----iaeGVEt-~~~~----~~l~~~g~ 415 (430)
T 3pjx_A 384 AIQRAAHSIDLPL-----IAERVET-EGEL----SVIREMGL 415 (430)
T ss_dssp HHHHHHHTTTCCE-----EECCCCC-HHHH----HHHHHTTC
T ss_pred HHHHHHHHCCCcE-----EEEecCC-HHHH----HHHHHcCC
Confidence 6666666667654 4677755 4443 45566654
No 53
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=39.64 E-value=1.5e+02 Score=24.95 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEe---ecCCCHHhhhhhcCCCCCCCHHHHHH
Q 028700 7 NYAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVS---LHAPVQDVRCQIMPAARAFPLEKLMN 82 (205)
Q Consensus 7 q~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~s---lk~~d~~~~~~i~~~~~~~~~~~i~~ 82 (205)
+.+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+| ++.++.+. ...++.
T Consensus 320 ~~~~~~~~l~~l~~~G~-----~ialDDfG~g~ssl~~L~~l~~d-~iKiD~~~i~~~~~~~------------~~~~~~ 381 (437)
T 3hvb_A 320 YLKQAKQLTQGLATLHC-----QAAISQFGCSLNPFNALKHLTVQ-FIKIDGSFVQDLNQVE------------NQEILK 381 (437)
T ss_dssp THHHHHHHHHHHHHTTC-----EEEEEEETCSSSHHHHHTTSCCS-EEEECGGGSSCCSSHH------------HHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-----EEEEcCCCCCccHHHHHhhCCCC-EEEECHHHHHhHhhCc------------HHHHHH
Confidence 45778888999998888 7999876643 345555544443 56677 33333221 123455
Q ss_pred HHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 83 ALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 83 ~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
.+-..++..+..+ ++.||-+ +++++ +++.++
T Consensus 382 ~~i~~~~~~~~~v-----iaegVEt-~~~~~----~l~~~G 412 (437)
T 3hvb_A 382 GLIAELHEQQKLS-----IVPFVES-ASVLA----TLWQAG 412 (437)
T ss_dssp HHHHHHHHTTCEE-----EECCCCS-HHHHH----HHHHHT
T ss_pred HHHHHHHHcCCCE-----EeeeeCC-HHHHH----HHHHcC
Confidence 5544555566544 4578754 55544 445555
No 54
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.38 E-value=1e+02 Score=24.96 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 103 DGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 103 pGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
-.+|++++++..+++-++..++.|++|-|-.- .+ ..+.|+.|.+...
T Consensus 116 s~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~----~~---n~~kLe~l~~~~N 162 (268)
T 4b4t_W 116 SPISDSRDELIRLAKTLKKNNVAVDIINFGEI----EQ---NTELLDEFIAAVN 162 (268)
T ss_dssp SCCSSCHHHHHHHHHHHHHHTEEEEEEEESSC----CS---SCCHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCC----cc---chHHHHHHHHHhc
Confidence 45889999999999999998989999887432 22 2356777777764
No 55
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=38.20 E-value=1.3e+02 Score=22.81 Aligned_cols=87 Identities=16% Similarity=0.366 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH----HHHHHHhhcCCCceEEEee---cCCCHHhhhhhcCCCCCCCHHHH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIV----HAINKFHSDLPGLNLAVSL---HAPVQDVRCQIMPAARAFPLEKL 80 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~----~~~~~l~~~~~~~~l~~sl---k~~d~~~~~~i~~~~~~~~~~~i 80 (205)
.+.+.+.++.+++.|+ +++++--|.. ..+..+.+.. +.+-+|+ ...+.+. ...+
T Consensus 127 ~~~~~~~l~~Lr~~G~-----~ialDDfG~g~ssl~~L~~l~~~~--~ki~~~~~~~~~~~~~~------------~~~~ 187 (235)
T 3kzp_A 127 NAFILNKIKVIHGLGY-----HIAIDDVSCGLNSLERVMSYLPYI--IEIKFSLIHFKNIPLED------------LLLF 187 (235)
T ss_dssp HHHHHHHHHHHHHTTC-----EEEECSTTSTTCCHHHHHHHGGGC--SEEEEEGGGGTTSCHHH------------HHHH
T ss_pred hHHHHHHHHHHHHCCC-----EEEEEeCCCCchhHHHHHhccCcc--eEEeccHHHhhcCCcHH------------HHHH
Confidence 3578899999999998 8999976643 3455655433 2344544 2222221 2345
Q ss_pred HHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 028700 81 MNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQ 123 (205)
Q Consensus 81 ~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~ 123 (205)
++.+..+++..|.+|+.+ ||- ++++++ +++.++
T Consensus 188 ~~~i~~~a~~lg~~viae-----GVE-t~~~~~----~l~~~G 220 (235)
T 3kzp_A 188 IKAWANFAQKNKLDFVVE-----GIE-TKETMT----LLESHG 220 (235)
T ss_dssp HHHHHHHHHHTTCEEEEE-----EEC-STHHHH----HHHHTT
T ss_pred HHHHHHHHHHcCCEEEEE-----Eec-CHHHHH----HHHHcC
Confidence 666666666677766554 554 444444 445555
No 56
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=38.14 E-value=26 Score=28.28 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCcH-H----HHHHHhhcCCCceEEEeecCCC
Q 028700 26 SPKRITVSTVGIV-H----AINKFHSDLPGLNLAVSLHAPV 61 (205)
Q Consensus 26 ~~~~~~v~T~G~~-~----~~~~l~~~~~~~~l~~slk~~d 61 (205)
+...+||.-.|-. . .++++...+.| .+-+-+|.++
T Consensus 18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD-~vElR~D~l~ 57 (258)
T 4h3d_A 18 GRPKICVPIIGKNKKDIIKEAKELKDACLD-IIEWRVDFFE 57 (258)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSSCS-EEEEEGGGCT
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCC-EEEEeecccc
Confidence 3457888777743 2 34455544433 3446666553
No 57
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=38.04 E-value=18 Score=31.26 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
++.+.++|+.+++.|+ .++|-||...+.+++.++.
T Consensus 258 ypgv~e~L~~Lk~~Gi-----~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 258 FTEFQEWVKKLKNRGI-----IIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp HHHHHHHHHHHHHTTC-----EEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC-----EEEEEcCCCHHHHHHHHhh
Confidence 4679999999999998 8999999887776666653
No 58
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=37.97 E-value=64 Score=30.12 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHhcCCceEEEeecCCCCCC----C----CccCCcHHHHHHHHHHHHhcCCceEEecccccccccccc
Q 028700 108 EEQHAHQLGKLLETFQVVVNLIPFNPIGSV----S----QFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~~v~lip~~~~g~~----~----~~~~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~~~C 177 (205)
+.+.+.++++++...+ +|.+-||... . . .|.....+++.++.++.+ .+||.+....+-+.|++.+|
T Consensus 164 ~~~~~~~~id~ma~~K--~N~~h~hl~D-d~~~~~~wr~~y~~~~~~~~~elv~ya~-~rgI~vv~~i~P~~~~~~~~ 237 (737)
T 2v5d_A 164 THQDRLDQIKFYGENK--LNTYIYAPKD-DPYHREKWREPYPESEMQRMQELINASA-ENKVDFVFGISPGIDIRFDG 237 (737)
T ss_dssp CHHHHHHHHHHHHHTT--CCEEECCCSC-CSTTTTTC-----CTTHHHHHHHHHHHH-HTTCEEEECCCCGGGCCCSS
T ss_pred CHHHHHHHHHHHHHhC--CeEEEEeccc-ccchhhccCcCCCHHHHHHHHHHHHHHH-HCCCEEEEecCCCccccCCC
Confidence 4678899999998775 4455677654 2 1 233223468888899988 79999986666677777766
No 59
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=36.88 E-value=55 Score=28.47 Aligned_cols=108 Identities=15% Similarity=0.262 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH--------HHHHHhhcCC---Cce-EEEeecCCCHHhhhhhcCCCCCC
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--------AINKFHSDLP---GLN-LAVSLHAPVQDVRCQIMPAARAF 75 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~--------~~~~l~~~~~---~~~-l~~slk~~d~~~~~~i~~~~~~~ 75 (205)
.+.+.++++.+.+. +.++-+.|-|+.... .++++.+..+ ++. +.++.-...- ....|
T Consensus 81 ~~~L~~aI~~~~~~---~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pvi~v~tpgf~g---s~~~G----- 149 (458)
T 1mio_B 81 GSNIKTAVKNIFSL---YNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVG---SHVTG----- 149 (458)
T ss_dssp HHHHHHHHHHHHHH---TCCSEEEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEEEEECCCTTSS---CHHHH-----
T ss_pred HHHHHHHHHHHHHh---cCCCEEEEECCcHHHHHhcCHHHHHHHHHHhcCCCCCCeEEEEECCCCcc---cHHHH-----
Confidence 35677777776554 234467887765442 2444433310 122 2244433331 11222
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 76 PLEKLMNALKEYQKNS--QQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~--~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
.+...+.+-+++... ..+-.|| +|+|+|. ..++.+|.++++.++.+++.+|
T Consensus 150 -~~~a~~al~~~l~~~~~~~~~~VN--ilg~~~~-~~d~~eik~lL~~~Gi~v~~l~ 202 (458)
T 1mio_B 150 -FANMVQGIVNYLSENTGAKNGKIN--VIPGFVG-PADMREIKRLFEAMDIPYIMFP 202 (458)
T ss_dssp -HHHHHHHHHHHHCCCCSCCCSCEE--EECCSCC-HHHHHHHHHHHHHHTCCEEESS
T ss_pred -HHHHHHHHHHHHccccCCCCCcEE--EECCCCC-HHHHHHHHHHHHHcCCcEEEec
Confidence 234444443332211 1223455 7799965 8889999999999998888876
No 60
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=36.47 E-value=1.8e+02 Score=23.87 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCC-CHHHHHHHHHHHhcCCc--eEEEeecCCCCCCCCccCCcHHHHHHH-
Q 028700 76 PLEKLMNALKEYQKNSQQKIFIEYIMLDGVND-EEQHAHQLGKLLETFQV--VVNLIPFNPIGSVSQFRTSSDDKVSSF- 151 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiND-s~e~i~~l~~~l~~~~~--~v~lip~~~~g~~~~~~~~~~e~l~~~- 151 (205)
+.++-.+.++...+..+. |+|+|-|+.. +-++..++++.+++.+. .+=++ .|+ |..|+.+.+.++
T Consensus 58 s~~Er~~v~~~~~~~~~g----rvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~--~P~-----y~~~s~~~l~~~f 126 (311)
T 3h5d_A 58 THDEELELFAAVQKVVNG----RVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAI--VPY-----YNKPSQEGMYQHF 126 (311)
T ss_dssp CHHHHHHHHHHHHHHSCS----SSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEE--CCC-----SSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC----CCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEc--CCC-----CCCCCHHHHHHHH
Confidence 444444455544443333 4556666653 45566777888887753 23222 121 223455555444
Q ss_pred HHHHHhcCCceEEec
Q 028700 152 QKILRGSYNIRTTVR 166 (205)
Q Consensus 152 ~~~l~~~~Gi~~~i~ 166 (205)
+.+.+ ..++++.+=
T Consensus 127 ~~va~-a~~lPiilY 140 (311)
T 3h5d_A 127 KAIAD-ASDLPIIIY 140 (311)
T ss_dssp HHHHH-SCSSCEEEE
T ss_pred HHHHH-hCCCCEEEE
Confidence 44444 556666553
No 61
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=36.17 E-value=90 Score=21.97 Aligned_cols=34 Identities=3% Similarity=-0.033 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+...++++.+++.|+ ++++-||+....++.++..
T Consensus 39 ~~~~~~l~~l~~~g~-----~~~i~T~~~~~~~~~~l~~ 72 (162)
T 2p9j_A 39 VLDGIGIKLLQKMGI-----TLAVISGRDSAPLITRLKE 72 (162)
T ss_dssp HHHHHHHHHHHTTTC-----EEEEEESCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCC-----EEEEEeCCCcHHHHHHHHH
Confidence 346789999998887 8999999877666666554
No 62
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=36.12 E-value=29 Score=21.77 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.6
Q ss_pred eCCCCCCHHHHHHHHHHHhcC
Q 028700 102 LDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 102 IpGiNDs~e~i~~l~~~l~~~ 122 (205)
.|.+.-+++++.+|++|+.++
T Consensus 59 Mp~~~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 59 MPPQNVTDAEAKQLAQWILSI 79 (80)
T ss_dssp BCCCCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 565677899999999999875
No 63
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=35.22 E-value=1.4e+02 Score=23.18 Aligned_cols=53 Identities=11% Similarity=0.248 Sum_probs=39.6
Q ss_pred EEEeCCCCCC---HHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 99 YIMLDGVNDE---EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 99 ~~lIpGiNDs---~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
+.++-|-+|. .+..+++.++++..+..+++..|...| ...+.++++.+.+.++
T Consensus 186 vl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y~g~g-----H~i~~~~l~~~~~fL~ 241 (246)
T 4f21_A 186 ILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHYVGMQ-----HSVCMEEIKDISNFIA 241 (246)
T ss_dssp EEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEESSCC-----SSCCHHHHHHHHHHHH
T ss_pred hhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCC-----CccCHHHHHHHHHHHH
Confidence 3457788886 567788999999888888887886655 2346788888888776
No 64
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=34.13 E-value=1.8e+02 Score=23.40 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEE-EEEEeCCCCCCHHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLGK 117 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~i-r~~lIpGiNDs~e~i~~l~~ 117 (205)
.+.+.+.+-.+..++..+.+|++ ++|---|+|-+.+.+.+|++
T Consensus 113 ~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 156 (293)
T 1f6k_A 113 FSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYK 156 (293)
T ss_dssp CCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhc
Confidence 34566777666666655666544 77777788888877777764
No 65
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A* 2ydr_A* 2ydq_A*
Probab=34.09 E-value=70 Score=29.14 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHhcCCceEEEeecCCCCCC----CC----ccCCcHHHHHHHHHHHHhcCCceEEecccccccccccc
Q 028700 108 EEQHAHQLGKLLETFQVVVNLIPFNPIGSV----SQ----FRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGAC 177 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~~v~lip~~~~g~~----~~----~~~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~~~C 177 (205)
+.+.+.++++++...+ +|.+-||... . .. |.....+++.++.++.+ .+|+++...-+-+.|++.++
T Consensus 164 ~~~~ik~~id~ma~~K--lN~~h~Hl~D-Dq~~~~~wr~~Yp~~~~~~i~elv~yA~-~rgI~vv~~i~Pe~d~~~~~ 237 (594)
T 2v5c_A 164 THQDRLDQIKFYGENK--LNTYIYAPKD-DPYHREKWREPYPESEMQRMQELINASA-ENKVDFVFGISPGIDIRFDG 237 (594)
T ss_dssp CHHHHHHHHHHHHHTT--CCEEEECCTT-CGGGTTTTTSCCCGGGHHHHHHHHHHHH-HTTCEEEEEECGGGTCCCST
T ss_pred CHHHHHHHHHHHHHhC--CcEEEEeccc-CcccccccCCCCCHHHHHHHHHHHHHHH-HCCcEEEEecCCCccccCCC
Confidence 4678888998888775 4445567753 2 12 22222458888888888 79999876556677777665
No 66
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=33.69 E-value=1.2e+02 Score=24.59 Aligned_cols=26 Identities=8% Similarity=0.173 Sum_probs=14.5
Q ss_pred EEEeCCCC-CCHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVN-DEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiN-Ds~e~i~~l~~~l~~~~~ 124 (205)
+|+|-|+. .+-++..++++.+++.++
T Consensus 72 vpviaGvg~~~t~~ai~la~~a~~~Ga 98 (292)
T 3daq_A 72 VPVIAGTGTNDTEKSIQASIQAKALGA 98 (292)
T ss_dssp SCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CcEEEeCCcccHHHHHHHHHHHHHcCC
Confidence 45555553 234455566677766663
No 67
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=33.29 E-value=1.9e+02 Score=23.40 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=32.3
Q ss_pred EEEEeCCCCC-CHHHHHHHHHHHhcCCc-eEEEe-ecCCCCCCCCccCCcHHHHHH-HHHHHHhcCCceEEe
Q 028700 98 EYIMLDGVND-EEQHAHQLGKLLETFQV-VVNLI-PFNPIGSVSQFRTSSDDKVSS-FQKILRGSYNIRTTV 165 (205)
Q Consensus 98 r~~lIpGiND-s~e~i~~l~~~l~~~~~-~v~li-p~~~~g~~~~~~~~~~e~l~~-~~~~l~~~~Gi~~~i 165 (205)
|+|+|-|+.. +-++.-++++.++..++ .+=++ || |..|+.+.+.+ |+.+.+ ..++++.+
T Consensus 77 rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~--------y~~~s~~~l~~~f~~va~-a~~lPiil 139 (301)
T 3m5v_A 77 KVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPY--------YNKPTQQGLYEHYKAIAQ-SVDIPVLL 139 (301)
T ss_dssp SCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC--------SSCCCHHHHHHHHHHHHH-HCSSCEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC--------CCCCCHHHHHHHHHHHHH-hCCCCEEE
Confidence 3566767663 45567778888888874 33222 22 22344444444 444445 45666654
No 68
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=33.23 E-value=71 Score=27.79 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=67.4
Q ss_pred CCCceEEEeecCCCHHhhh--hhcCCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCce
Q 028700 48 LPGLNLAVSLHAPVQDVRC--QIMPAARAFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVV 125 (205)
Q Consensus 48 ~~~~~l~~slk~~d~~~~~--~i~~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~ 125 (205)
+.++.|.+|.++. +.++ +|.-.+..++.++.++.++.+++.++ .++|+=|+-+ |+. +.+.++-+..+..
T Consensus 236 G~dv~l~vD~aas--e~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~-i~~IEdPl~~---dD~---eg~~~L~~~~~~p 306 (428)
T 3tqp_A 236 GKDIYLALDAASS--ELYQNGRYDFENNQLTSEEMIDRLTEWTKKYP-VISIEDGLSE---NDW---AGWKLLTERLENK 306 (428)
T ss_dssp TTTBEEEEECCGG--GSEETTEECCSSSCBCHHHHHHHHHHHHHHSC-EEEEECCSCT---TCH---HHHHHHHHHHTTT
T ss_pred CCceEEEEecchh--hhccCCceeccccccCHHHHHHHHHHHHhhcc-cceEeCCCCc---ccH---HHHHHHHHhcCCC
Confidence 3456677777542 1111 11111235677888888877666555 7899999754 233 4444444433311
Q ss_pred EEEe-e--c--CC--------CCCCCCcc------CCcHHHHHHHHHHHHhcCCceEEeccccccc---------ccccc
Q 028700 126 VNLI-P--F--NP--------IGSVSQFR------TSSDDKVSSFQKILRGSYNIRTTVRKQMGQD---------ISGAC 177 (205)
Q Consensus 126 v~li-p--~--~~--------~g~~~~~~------~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d---------~~~~C 177 (205)
|.+. . | ++ .+ .-++- .-.--+..++.++.+ .+|+.+.+..+.|.. +..+|
T Consensus 307 I~ivGDel~vt~~~~~~~~i~~~-a~d~i~iKv~~iGGiTealkia~lA~-~~G~~~~v~H~sGEted~~iadLaVa~~~ 384 (428)
T 3tqp_A 307 VQLVGDDIFVTNPDILEKGIKKN-IANAILVKLNQIGTLTETLATVGLAK-SNKYGVIISHRSGETEDTTIADLAVATDA 384 (428)
T ss_dssp SEEEESTTTTTCHHHHHHHHHTT-CCSEEEECHHHHCCHHHHHHHHHHHH-HTTCEEEEECCSBCCSCCHHHHHHHHTTC
T ss_pred cceeccccccCCHHHHHHHHHhC-CCCEEEecccccCCHHHHHHHHHHHH-HcCCeEEEeCCCCCchHHHHHHHHHHcCC
Confidence 2111 0 1 10 00 00110 112355667777888 799998888877753 34567
Q ss_pred cccccccc
Q 028700 178 GQLVVNLP 185 (205)
Q Consensus 178 gql~~~~~ 185 (205)
||.+...+
T Consensus 385 ~~ik~G~p 392 (428)
T 3tqp_A 385 RQIKTGSL 392 (428)
T ss_dssp EEEECCCS
T ss_pred CcccCCCC
Confidence 77765543
No 69
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=32.76 E-value=1.5e+02 Score=23.95 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH------HHHHHHhhcCCCceEEEeecCCCHHhhhhh
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIV------HAINKFHSDLPGLNLAVSLHAPVQDVRCQI 68 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~------~~~~~l~~~~~~~~l~~slk~~d~~~~~~i 68 (205)
++.+++..+.+-+.|-.+ ..+..+++.-- +.++.+.+.. .+-+||++.+++..+.-
T Consensus 33 ~~~a~~~a~~~v~~GAdi--IDIg~~s~~~eE~~rv~~vi~~l~~~~---~~pisIDT~~~~v~~aa 94 (271)
T 2yci_X 33 PRPIQEWARRQAEKGAHY--LDVNTGPTADDPVRVMEWLVKTIQEVV---DLPCCLDSTNPDAIEAG 94 (271)
T ss_dssp CHHHHHHHHHHHHTTCSE--EEEECCSCSSCHHHHHHHHHHHHHHHC---CCCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCE--EEEcCCcCchhHHHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHH
Confidence 456666666666655422 23444443221 2344554432 35588888887775553
No 70
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=32.01 E-value=2.2e+02 Score=23.67 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEE-EEEEeCCCCCCHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQKIFI-EYIMLDGVNDEEQHAHQLG 116 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~i-r~~lIpGiNDs~e~i~~l~ 116 (205)
.+-+.+.+-.+..++..+.+|++ ++|---|+|-+.+.+.+|+
T Consensus 140 ~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 182 (343)
T 2v9d_A 140 VSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLA 182 (343)
T ss_dssp CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence 35667777777666666667654 7776678888888777776
No 71
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=31.76 E-value=1.2e+02 Score=25.75 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCce-EEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEe
Q 028700 103 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 103 pGiNDs~e~i~~l~~~l~~~~~~-v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
|+.|.+++.+.++++.++..+.. +.+--|.|=-....|..+..+.++.+++..+ +.|+.+..
T Consensus 113 pcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~~~~-e~Gl~~~t 175 (350)
T 1vr6_A 113 PCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAAD-KYGMYVVT 175 (350)
T ss_dssp CSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHHHHH-HHTCEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHHHHH-HcCCcEEE
Confidence 78899999999999999998753 3333333311122466667899999999988 79987754
No 72
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=31.64 E-value=1.2e+02 Score=23.72 Aligned_cols=142 Identities=8% Similarity=0.055 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCc-------HHHHHHHhhcCCCceEEEeecCCCHHhhhhhc---CC-----C
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGI-------VHAINKFHSDLPGLNLAVSLHAPVQDVRCQIM---PA-----A 72 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~-------~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~---~~-----~ 72 (205)
+-.+.+.++.+ +.|.. ..|+-+==..| .+.++.+.+.. +.-+-+++...|++.+-+.. |. +
T Consensus 12 ~~~l~~~i~~~-~~gad--~lHvDvmDG~fvpn~t~G~~~v~~lr~~~-~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh 87 (231)
T 3ctl_A 12 LLKFKEQIEFI-DSHAD--YFHIDIMDGHFVPNLTLSPFFVSQVKKLA-TKPLDCHLMVTRPQDYIAQLARAGADFITLH 87 (231)
T ss_dssp GGGHHHHHHHH-HTTCS--CEEEEEECSSSSSCCCBCHHHHHHHHTTC-CSCEEEEEESSCGGGTHHHHHHHTCSEEEEC
T ss_pred hhhHHHHHHHH-HcCCC--EEEEEEEeCccCccchhcHHHHHHHHhcc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEEC
Confidence 34466777777 55442 12455421111 13566666654 23455778888887753321 11 1
Q ss_pred CCC-CHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCC-CCCCCCccCCcHHHHHH
Q 028700 73 RAF-PLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNP-IGSVSQFRTSSDDKVSS 150 (205)
Q Consensus 73 ~~~-~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~-~g~~~~~~~~~~e~l~~ 150 (205)
... . ..+.+.++ .+++.|.++-+ .+=|+ ...+ .+..++.... .|-++..|| +| +.+|.+...+.+++
T Consensus 88 ~Ea~~-~~~~~~i~-~i~~~G~k~gv--~lnp~--tp~~---~~~~~l~~~D-~VlvmsV~pGfg-gQ~f~~~~l~kI~~ 156 (231)
T 3ctl_A 88 PETIN-GQAFRLID-EIRRHDMKVGL--ILNPE--TPVE---AMKYYIHKAD-KITVMTVDPGFA-GQPFIPEMLDKLAE 156 (231)
T ss_dssp GGGCT-TTHHHHHH-HHHHTTCEEEE--EECTT--CCGG---GGTTTGGGCS-EEEEESSCTTCS-SCCCCTTHHHHHHH
T ss_pred cccCC-ccHHHHHH-HHHHcCCeEEE--EEECC--CcHH---HHHHHHhcCC-EEEEeeeccCcC-CccccHHHHHHHHH
Confidence 110 0 11333333 33346765554 34444 3322 3333333222 455667888 54 66787777888888
Q ss_pred HHHHHHhcCC--ceEEe
Q 028700 151 FQKILRGSYN--IRTTV 165 (205)
Q Consensus 151 ~~~~l~~~~G--i~~~i 165 (205)
+++.+. ..| +.+.+
T Consensus 157 lr~~~~-~~~~~~~I~V 172 (231)
T 3ctl_A 157 LKAWRE-REGLEYEIEV 172 (231)
T ss_dssp HHHHHH-HHTCCCEEEE
T ss_pred HHHHHh-ccCCCceEEE
Confidence 888876 343 44444
No 73
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=31.49 E-value=41 Score=20.95 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=16.4
Q ss_pred eCCC-CCCHHHHHHHHHHHhcC
Q 028700 102 LDGV-NDEEQHAHQLGKLLETF 122 (205)
Q Consensus 102 IpGi-NDs~e~i~~l~~~l~~~ 122 (205)
.|.+ .-+++++.+|++|+.++
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhC
Confidence 4444 56788999999999875
No 74
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=30.81 E-value=41 Score=20.97 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.8
Q ss_pred eCCCCCCHHHHHHHHHHHhcC
Q 028700 102 LDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 102 IpGiNDs~e~i~~l~~~l~~~ 122 (205)
.|.+.-+++++.+|+.|+..+
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 61 MPPNAVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp BCCCCCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHhC
Confidence 454566888999999999875
No 75
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=30.08 E-value=58 Score=24.27 Aligned_cols=34 Identities=12% Similarity=-0.065 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSD 47 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~ 47 (205)
+.+.++++.++++|+ .++|-|++....++.++..
T Consensus 95 ~g~~~~l~~l~~~g~-----~~~ivS~~~~~~~~~~~~~ 128 (232)
T 3fvv_A 95 VQAVDVVRGHLAAGD-----LCALVTATNSFVTAPIARA 128 (232)
T ss_dssp HHHHHHHHHHHHTTC-----EEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-----EEEEEeCCCHHHHHHHHHH
Confidence 568899999999888 8999999987666665553
No 76
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=30.00 E-value=40 Score=20.99 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=17.3
Q ss_pred eCCCCCCHHHHHHHHHHHhcC
Q 028700 102 LDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 102 IpGiNDs~e~i~~l~~~l~~~ 122 (205)
.|.+.-+++++.+|+.|+..+
T Consensus 61 Mp~~~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 61 MPPNPVTEEEAKILAEWVLSL 81 (82)
T ss_dssp CCCCSCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 555577889999999999875
No 77
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=29.84 E-value=90 Score=23.49 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=36.8
Q ss_pred EEEeCCCCCC---HHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCcHHHHHHHHHHHH
Q 028700 99 YIMLDGVNDE---EQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSSDDKVSSFQKILR 156 (205)
Q Consensus 99 ~~lIpGiNDs---~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~ 156 (205)
+.++-|-+|. .+..+++.+.++..+..+++..|-..| ...+.++++.+++.+.
T Consensus 154 vl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~g-----H~i~~~el~~i~~wL~ 209 (210)
T 4h0c_A 154 VFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRP-----HTISGDEIQLVNNTIL 209 (210)
T ss_dssp EEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCC-----SSCCHHHHHHHHHTTT
T ss_pred eEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCC-----CCcCHHHHHHHHHHHc
Confidence 4456777775 567788888888888778777774443 2346777877776653
No 78
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=29.72 E-value=88 Score=25.56 Aligned_cols=15 Identities=0% Similarity=-0.206 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhcCC
Q 028700 8 YAALVEAVRIMTGLP 22 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~ 22 (205)
++.+.+.++.+-+.|
T Consensus 24 ~~~l~~lv~~li~~G 38 (300)
T 3eb2_A 24 ADVMGRLCDDLIQAG 38 (300)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 444444444444443
No 79
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=29.60 E-value=57 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=15.7
Q ss_pred eCCCCCCHHHHHHHHHHHhcC
Q 028700 102 LDGVNDEEQHAHQLGKLLETF 122 (205)
Q Consensus 102 IpGiNDs~e~i~~l~~~l~~~ 122 (205)
.|...-+++++.+|++|+..+
T Consensus 50 Mp~~~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 50 MPGGIAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp BCSCSSCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 344455788999999999865
No 80
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=28.75 E-value=93 Score=26.57 Aligned_cols=90 Identities=7% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEe---ecCCCHHhhhhhcCCCCCCCHHHHHHH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVS---LHAPVQDVRCQIMPAARAFPLEKLMNA 83 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~s---lk~~d~~~~~~i~~~~~~~~~~~i~~~ 83 (205)
.+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+| ++.+..+. ....+++.
T Consensus 290 ~~~~~~~l~~Lr~~G~-----~ialDDFG~g~ssl~~L~~l~~d-~iKID~s~v~~~~~~~-----------~~~~iv~~ 352 (413)
T 3gfz_A 290 FDQFRKVLKALRVAGM-----KLAIDDFGAGYSGLSLLTRFQPD-KIKVDAELVRDIHISG-----------TKQAIVAS 352 (413)
T ss_dssp STTHHHHHHHHHHHTC-----EEEEEEETSSSCSHHHHTTCCCS-EEEECHHHHTTTTTBH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-----EEEEECCCCCcchHHHHhhCCCC-EEEECHHHHhhhhcCh-----------HHHHHHHH
Confidence 3456777777777777 6777765543 234444443332 45555 22221111 12345666
Q ss_pred HHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 84 LKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 84 l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
+..+++..|.+| +..||-+ +++++ +++.+++
T Consensus 353 ii~la~~lg~~v-----iAEGVEt-~~q~~----~l~~lG~ 383 (413)
T 3gfz_A 353 VVRCCEDLGITV-----VAEGVET-LEEWC----WLQSVGI 383 (413)
T ss_dssp HHHHHHHHTCEE-----EEECCCS-HHHHH----HHHHTTC
T ss_pred HHHHHHHcCCEE-----EEecCCC-HHHHH----HHHHcCC
Confidence 666666667655 4567754 44444 4555653
No 81
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=28.48 E-value=1.4e+02 Score=28.11 Aligned_cols=92 Identities=4% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHH--------------------HHHHHHHHhcCCceEEEeecCC
Q 028700 74 AFPLEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQH--------------------AHQLGKLLETFQVVVNLIPFNP 133 (205)
Q Consensus 74 ~~~~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~--------------------i~~l~~~l~~~~~~v~lip~~~ 133 (205)
....++.++-+. |+.+.| +.++||.|+|..=+. +++|+++.++.++.+ ++=++.
T Consensus 367 g~nte~~K~YID-FAA~~G----~eyvLveGwD~GW~~~~~~~~~~~fd~~~p~pd~Dl~eL~~YA~sKGV~i-ilw~~t 440 (738)
T 2d73_A 367 SANTANVKRYID-FAAAHG----FDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAARKGIKM-MMHHET 440 (738)
T ss_dssp CCCHHHHHHHHH-HHHHTT----CSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTCCHHHHHHHHHHTTCEE-EEEEEC
T ss_pred CCCHHHHHHHHH-HHHHcC----CCEEEEEeccCCcccccCccccccccccccCCCCCHHHHHHHHHhCCCEE-EEEEcC
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHhcCCceEEeccccccccccc
Q 028700 134 IGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMGQDISGA 176 (205)
Q Consensus 134 ~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~~~ 176 (205)
.| --.-.+.++++..+.++ ++|+.-.-.+-.|+-+..+
T Consensus 441 ~~----~~~n~e~~~d~~f~~~~-~~Gv~GVKvdF~g~~~~r~ 478 (738)
T 2d73_A 441 SA----SVRNYERHMDKAYQFMA-DNGYNSVKSGYVGNIIPRG 478 (738)
T ss_dssp TT----BHHHHHHHHHHHHHHHH-HTTCCEEEEECCSSCBSTT
T ss_pred CC----chhhHHHHHHHHHHHHH-HcCCCEEEeCccccCcCCc
No 82
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=28.23 E-value=13 Score=33.62 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=26.7
Q ss_pred CccCCCH---HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH
Q 028700 2 GEPLNNY---AALVEAVRIMTGLPFQVSPKRITVSTVGIVH 39 (205)
Q Consensus 2 GEPllq~---~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~ 39 (205)
||++.+. +++.+++..+|+.|+ +.+++|++..+
T Consensus 238 ge~f~~~~g~~~~~~l~~alk~lGf-----~~v~dt~~~ad 273 (574)
T 3c8y_A 238 GELFNMGFGVDVTGKIYTALRQLGF-----DKIFDINFGAD 273 (574)
T ss_dssp GGGGTCCSSCCCHHHHHHHHHHHTC-----SEEEEHHHHHH
T ss_pred hhhhccccCchHHHHHHHHHHHcCC-----CEEeecccchh
Confidence 6888765 577888888887788 89999998764
No 83
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=28.13 E-value=84 Score=29.32 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHhcCCceEEEeecCCCCCC-----CCcc----CCcHHHHHHHHHHHHhcCCceEEeccccccccc
Q 028700 108 EEQHAHQLGKLLETFQVVVNLIPFNPIGSV-----SQFR----TSSDDKVSSFQKILRGSYNIRTTVRKQMGQDIS 174 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~~v~lip~~~~g~~-----~~~~----~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g~d~~ 174 (205)
+.+.+.++++++...+ +|.+-||... . ..|+ ..+.+++.++.++.+ .+|+++....+-|.|++
T Consensus 142 s~~~ik~~id~ma~~K--lN~~h~hl~D-dp~~~~~~wr~~yP~lt~~ei~elv~yA~-~rgI~vvpeI~Pg~~~~ 213 (716)
T 2cho_A 142 SHQARLSQLKFYGKNK--MNTYIYGPKD-DPYHSAPNWRLPYPDKEAAQLQELVAVAN-ENEVDFVWAIHPGQDIK 213 (716)
T ss_dssp CHHHHHHHHHHHHHTT--CCEEEECCTT-CTTTSTTGGGSCCCHHHHHHHHHHHHHHH-HTTCEEEEEECCTTTCC
T ss_pred CHHHHHHHHHHHHHcC--CcEEEEeecc-CcccccccccccCChhhHHHHHHHHHHHH-HcCCEEEEeecccccCC
Confidence 5778888888888775 4445566653 2 2332 125678888888888 78998876555555543
No 84
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=27.46 E-value=2.1e+02 Score=23.07 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEeCC---CC-----CCHHHHHHHHHHHhcC-----CceEEEeecCCCCCCCCccCC
Q 028700 77 LEKLMNALKEYQKNSQQKIFIEYIMLDG---VN-----DEEQHAHQLGKLLETF-----QVVVNLIPFNPIGSVSQFRTS 143 (205)
Q Consensus 77 ~~~i~~~l~~~~~~~~~~V~ir~~lIpG---iN-----Ds~e~i~~l~~~l~~~-----~~~v~lip~~~~g~~~~~~~~ 143 (205)
++.+.+.++ +++..|.+..+ +-+| .+ +.++..+.+++.++.+ +..+ .|.++|.++.....-.
T Consensus 106 i~~~~~~i~-~A~~LGa~~vv---~~~g~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i-~lE~~p~~~~~~~~~~ 180 (333)
T 3ktc_A 106 FELMHESAG-IVRELGANYVK---VWPGQDGWDYPFQVSHKNLWKLAVDGMRDLAGANPDVKF-AIEYKPREPRVKMTWD 180 (333)
T ss_dssp HHHHHHHHH-HHHHHTCSEEE---ECCTTCEESSTTSSCHHHHHHHHHHHHHHHHHTCTTSEE-EEECCSCSSSSEESSC
T ss_pred HHHHHHHHH-HHHHhCCCEEE---ECCCCCCcCCCCcCCHHHHHHHHHHHHHHHHHHhhcCCE-EEEEecCCCCccccCC
Confidence 345555665 44456776552 3344 32 3344555555555543 2345 3556665421111234
Q ss_pred cHHHHHHHHHHHH
Q 028700 144 SDDKVSSFQKILR 156 (205)
Q Consensus 144 ~~e~l~~~~~~l~ 156 (205)
+.+++..+.+.+.
T Consensus 181 ~~~~~~~ll~~v~ 193 (333)
T 3ktc_A 181 SAARTLLGIEDIG 193 (333)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC
Confidence 5666655555554
No 85
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=27.44 E-value=54 Score=24.11 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcH---HHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIV---HAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~---~~~~~l~~ 46 (205)
+.+.++|+.|++.|+ .++|-||+.. ..++.++.
T Consensus 37 ~g~~~~L~~L~~~g~-----~~~i~Tn~~~~~~~~~~~~l~ 72 (189)
T 3ib6_A 37 KNAKETLEKVKQLGF-----KQAILSNTATSDTEVIKRVLT 72 (189)
T ss_dssp TTHHHHHHHHHHTTC-----EEEEEECCSSCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCC-----EEEEEECCCccchHHHHHHHH
Confidence 458899999999888 8999999875 45555544
No 86
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=26.62 E-value=1.7e+02 Score=21.36 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=43.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCcc----CCcHHHHHHHHHHHHhcCCc---eEEeccccc
Q 028700 99 YIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFR----TSSDDKVSSFQKILRGSYNI---RTTVRKQMG 170 (205)
Q Consensus 99 ~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~----~~~~e~l~~~~~~l~~~~Gi---~~~i~~~~g 170 (205)
++++.|+..+......+++.+.+.+..|-.+.+.-.| .+... ..-.+..+.+.+.+. ..+. -+.++.|.|
T Consensus 7 vv~lHG~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G-~S~~~~~~~~~~~~~~~~l~~~l~-~l~~~~~~~lvGhS~G 83 (258)
T 3dqz_A 7 FVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASG-IDPRPIQAVETVDEYSKPLIETLK-SLPENEEVILVGFSFG 83 (258)
T ss_dssp EEEECCTTCCGGGGTTHHHHHHHTTCEEEEECCTTST-TCSSCGGGCCSHHHHHHHHHHHHH-TSCTTCCEEEEEETTH
T ss_pred EEEECCCCCccccHHHHHHHHHhCCCEEEEecCCCCc-CCCCCCCccccHHHhHHHHHHHHH-HhcccCceEEEEeChh
Confidence 6789999999888788888887766555444444444 22211 123456666777777 5654 244566666
No 87
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=25.80 E-value=37 Score=24.53 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcH
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIV 38 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~ 38 (205)
+.+.++|+.+++.|+ +++|-||+..
T Consensus 30 ~g~~~~l~~L~~~g~-----~~~i~Tn~~~ 54 (179)
T 3l8h_A 30 PGSLQAIARLTQADW-----TVVLATNQSG 54 (179)
T ss_dssp TTHHHHHHHHHHTTC-----EEEEEEECTT
T ss_pred cCHHHHHHHHHHCCC-----EEEEEECCCc
Confidence 558999999999888 8999998863
No 88
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=25.60 E-value=62 Score=28.87 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=28.7
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
-.|| +|+|+|....++.+|.++++.++.+++++|
T Consensus 222 ~~VN--Iig~~~~~~gD~~elkrlL~~~Gi~v~~lp 255 (523)
T 3u7q_B 222 KKIN--IVPGFETYLGNFRVIKRMLSEMGVGYSLLS 255 (523)
T ss_dssp CCEE--EECCSCCCHHHHHHHHHHHHHTTCCEEESS
T ss_pred CeEE--EECCCCCChhHHHHHHHHHHHcCCeEEEec
Confidence 3455 589999878899999999999998888875
No 89
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=25.58 E-value=1.8e+02 Score=23.52 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=13.9
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcCCc
Q 028700 99 YIMLDGVND-EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 99 ~~lIpGiND-s~e~i~~l~~~l~~~~~ 124 (205)
+|+|-|+.. +-++..++++.+++.++
T Consensus 73 ~pviaGvg~~~t~~ai~la~~A~~~Ga 99 (294)
T 3b4u_A 73 SRIVTGVLVDSIEDAADQSAEALNAGA 99 (294)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred CcEEEeCCCccHHHHHHHHHHHHhcCC
Confidence 345555543 33445556666666653
No 90
>1esw_A Amylomaltase; (beta,alpha)8-barrel, glucanotransferase, alpha-amylase FAMI acarbose, transferase; HET: ACR; 1.90A {Thermus aquaticus} SCOP: c.1.8.1 PDB: 1cwy_A* 1fp8_A 1fp9_A 2owc_A* 2oww_A* 2owx_A* 2x1i_A*
Probab=25.29 E-value=50 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 104 GVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 104 GiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
|+-|--+.+.++++|++..+. .+.++|+||.+
T Consensus 21 GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~ 53 (500)
T 1esw_A 21 GVGVLGREARDFLRFLKEAGGRYWQVLPLGPTG 53 (500)
T ss_dssp SSCCSSHHHHHHHHHHHHTTCCEEECCCCSCBC
T ss_pred CCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 566655567799999998884 68899999876
No 91
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=24.96 E-value=1.5e+02 Score=26.27 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=27.7
Q ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 95 IFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 95 V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
-.|| +|+|+|....++.+|.++++.++.+++++|
T Consensus 218 ~~VN--Ilg~~~~~~gD~~eik~lL~~~Gi~v~~lp 251 (519)
T 1qgu_B 218 PKLN--LVTGFETYLGNFRVLKRMMEQMAVPCSLLS 251 (519)
T ss_dssp EEEE--EECCSCCCHHHHHHHHHHHHHHTCCEEESS
T ss_pred CcEE--EECCCCCCcccHHHHHHHHHHcCCeEEEec
Confidence 4455 789997647789999999999998888877
No 92
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=24.72 E-value=3.1e+02 Score=23.04 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALK 85 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~ 85 (205)
+.++....+.+.+++.|+ ..++|.-....++.+.+++.+ - +-|-|-+ ... +..|+
T Consensus 88 l~~e~~~~L~~~~~~~Gi------~~~st~~d~~svd~l~~~~v~-~--~KI~S~~-------------~~n---~~LL~ 142 (349)
T 2wqp_A 88 LNEEDEIKLKEYVESKGM------IFISTLFSRAAALRLQRMDIP-A--YKIGSGE-------------CNN---YPLIK 142 (349)
T ss_dssp CCHHHHHHHHHHHHHTTC------EEEEEECSHHHHHHHHHHTCS-C--EEECGGG-------------TTC---HHHHH
T ss_pred CCHHHHHHHHHHHHHhCC------eEEEeeCCHHHHHHHHhcCCC-E--EEECccc-------------ccC---HHHHH
Confidence 356778888888888877 677777655667777666433 2 2222211 111 22344
Q ss_pred HHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEeecCCCCCCCCccCCc-HHHHHHHHHHHHhcC-CceE
Q 028700 86 EYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSVSQFRTSS-DDKVSSFQKILRGSY-NIRT 163 (205)
Q Consensus 86 ~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip~~~~g~~~~~~~~~-~e~l~~~~~~l~~~~-Gi~~ 163 (205)
+.. +.+++|.+- .|.. +.+++...++++...+..|-|+ | + ...|+.|. .-.+..+..+-+ .+ ++.+
T Consensus 143 ~va-~~gkPviLs----tGma-t~~Ei~~Ave~i~~~G~~iiLl--h--c-~s~Yp~~~~~~nL~ai~~lk~-~f~~lpV 210 (349)
T 2wqp_A 143 LVA-SFGKPIILS----TGMN-SIESIKKSVEIIREAGVPYALL--H--C-TNIYPTPYEDVRLGGMNDLSE-AFPDAII 210 (349)
T ss_dssp HHH-TTCSCEEEE----CTTC-CHHHHHHHHHHHHHHTCCEEEE--E--C-CCCSSCCGGGCCTHHHHHHHH-HCTTSEE
T ss_pred HHH-hcCCeEEEE----CCCC-CHHHHHHHHHHHHHcCCCEEEE--e--c-cCCCCCChhhcCHHHHHHHHH-HCCCCCE
Confidence 222 378887764 6786 8899999999998766544344 4 3 34454432 223333333222 45 5666
Q ss_pred Ee
Q 028700 164 TV 165 (205)
Q Consensus 164 ~i 165 (205)
..
T Consensus 211 g~ 212 (349)
T 2wqp_A 211 GL 212 (349)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 93
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex aeolicus} SCOP: c.1.8.1
Probab=24.56 E-value=44 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCC
Q 028700 103 DGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIG 135 (205)
Q Consensus 103 pGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g 135 (205)
-|+-|--+.+.++++|++..+. .+.++|+||.+
T Consensus 37 ~GIGdfgd~a~~~vd~la~~G~~~~qilPL~pt~ 70 (505)
T 1tz7_A 37 YGIGDLGKEAYRFLDFLKECGFSLWQVLPLNPTS 70 (505)
T ss_dssp SSSCCSSHHHHHHHHHHHHHTCCEEECCCCSCCC
T ss_pred CCCccHHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3566655567799999998874 68999999976
No 94
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=24.30 E-value=1.4e+02 Score=24.24 Aligned_cols=62 Identities=6% Similarity=0.002 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCCce-EEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEe
Q 028700 103 DGVNDEEQHAHQLGKLLETFQVV-VNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 103 pGiNDs~e~i~~l~~~l~~~~~~-v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
|+-|.+.+.+.++++.++..+.. +.+--|.|=-....|..+.++.++.+++..+ +.|+.+..
T Consensus 45 pc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~-~~Gl~~~t 107 (276)
T 1vs1_A 45 PCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGD-EAGLPVVT 107 (276)
T ss_dssp CSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHH-HHTCCEEE
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHH-HcCCcEEE
Confidence 67889999999999999988753 3333333311112366667899999999988 79987653
No 95
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=24.00 E-value=26 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=16.0
Q ss_pred EeCCC-CCCHHHHHHHHHHHhcC
Q 028700 101 MLDGV-NDEEQHAHQLGKLLETF 122 (205)
Q Consensus 101 lIpGi-NDs~e~i~~l~~~l~~~ 122 (205)
..|.+ .-+++++.+|++|+.++
T Consensus 58 ~Mp~~~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 58 PMPPNVNVSDADAKALADWILTL 80 (81)
T ss_dssp CBCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC
Confidence 34555 45677999999999764
No 96
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=23.77 E-value=1e+02 Score=26.65 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCc-eEEEeecCCCCC-CCCcc-------C---CcHHHHHHHHHHHHhcCCceEEe
Q 028700 112 AHQLGKLLETFQV-VVNLIPFNPIGS-VSQFR-------T---SSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 112 i~~l~~~l~~~~~-~v~lip~~~~g~-~~~~~-------~---~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+.+-+++++++|+ .|.|+|+.+... ...|. . -+.++++++.+.+- +.||.|.+
T Consensus 34 i~~kLdYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH-~~Gi~Vil 98 (549)
T 4aie_A 34 IISRLDYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAK-EHHIKIVM 98 (549)
T ss_dssp HHTTHHHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHhhHHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 3334568888885 789999987631 12221 1 24678888888887 79998864
No 97
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=23.49 E-value=1.1e+02 Score=27.13 Aligned_cols=57 Identities=4% Similarity=0.107 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCC--CccC----------CcHHHHHHHHHHHHhcCCceEEe
Q 028700 108 EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVS--QFRT----------SSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~--~~~~----------~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+-..+.+.+++++++++ .|.|+|.++.+... .|.+ -+.++++++.+.+. +.|+.|.+
T Consensus 117 ~~~~~~~~l~~l~~lG~~~v~l~Pi~~~~~~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h-~~Gi~Vil 186 (558)
T 3vgf_A 117 TFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAH-KKGLGVIL 186 (558)
T ss_dssp SHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGTHHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCcccCCCCCCcCcccccccccccccCCHHHHHHHHHHHH-HcCCEEEE
Confidence 45566667788888885 79999998764221 1221 23688888888888 79998865
No 98
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=23.45 E-value=92 Score=26.53 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
++.+.++|+.|++.|+ .++|-||+....++..+.
T Consensus 217 ~pGv~elL~~Lk~~Gi-----~laIvTn~~~~~~~~~L~ 250 (384)
T 1qyi_A 217 VDEVKVLLNDLKGAGF-----ELGIATGRPYTETVVPFE 250 (384)
T ss_dssp HHHHHHHHHHHHHTTC-----EEEEECSSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHhCCC-----EEEEEeCCcHHHHHHHHH
Confidence 5679999999999888 899999998765544443
No 99
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=22.87 E-value=1.2e+02 Score=27.19 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCcc----------CCcHHHHHHHHHHHHhcCCceEEe
Q 028700 108 EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFR----------TSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~----------~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+-..+.+-+++++++++ .|.|.|..+......|. --+.++++++.+.+- +.||.|.+
T Consensus 174 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H-~~Gi~Vil 241 (588)
T 1j0h_A 174 DLQGIIDHLDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCH-EKGIRVML 241 (588)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCcCccccCccCccCCCHHHHHHHHHHHH-HCCCEEEE
Confidence 34455555688899985 78898887643112221 124788888888888 79998865
No 100
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=22.87 E-value=1.6e+02 Score=26.30 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCcc-----C-----CcHHHHHHHHHHHHhcCCceEEe
Q 028700 108 EEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFR-----T-----SSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~-----~-----~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
+-..+.+-+++++++++ .|.|.|..+......|. . -+.++++++.+.+- +.||.|.+
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~~H-~~Gi~Vil 237 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKATTNHKYDTEDYFQIDPQFGDKDTLKKLVDLCH-ERGIRVLL 237 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCSSSSTTSCSCTTCCCTTTCCHHHHHHHHHHHT-TTTCEEEE
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 34445555688999985 78999987753211221 1 24788888888887 79998875
No 101
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=22.51 E-value=94 Score=27.39 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=53.8
Q ss_pred HHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCC-HHHHHHHHHHHHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHH
Q 028700 40 AINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFP-LEKLMNALKEYQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKL 118 (205)
Q Consensus 40 ~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~-~~~i~~~l~~~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~ 118 (205)
+++-|....++..+.+-+.+-|=|+.+ +- .+-... -.++++.+..|.. ..+.|+-++|.-++|....+..+..-
T Consensus 59 Ki~mL~~LkD~~EIvI~I~A~DIE~nK-vR-gDlGItYD~dVLRLiD~fr~---~gl~V~sVVITqy~~~q~~a~~F~~r 133 (507)
T 3bh1_A 59 KIAMLDRIKDEVEILVCINAKDLERHK-IR-ADLGISYEEDVLRLVDVFRD---RGFLVEHVVLTQLENDNRLALAFIER 133 (507)
T ss_dssp HHHHHHTTGGGEEEEEEEEHHHHTTTC-EE-TTTTEEHHHHHHHHHHHHHH---TTCEEEEEEEESCCTTCHHHHHHHHH
T ss_pred HHHHHHHhhhcceEEEEEEhhhhhhcc-cc-ccCCCChhHHHHHHHHHHHh---cCCeeeeEEEEecCCCChhHHHHHHH
Confidence 454444443335677777776655432 21 222222 2468888886644 45899999999999777778888888
Q ss_pred HhcCCceE
Q 028700 119 LETFQVVV 126 (205)
Q Consensus 119 l~~~~~~v 126 (205)
+..++.+|
T Consensus 134 Le~~GIkv 141 (507)
T 3bh1_A 134 LQRLGIKV 141 (507)
T ss_dssp HHTTTCEE
T ss_pred HHHCCCcE
Confidence 88888665
No 102
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=22.51 E-value=2.6e+02 Score=21.27 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=54.2
Q ss_pred cEEEEcCCcH-----HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHHHHHhcCCcE-EEEEEEe
Q 028700 29 RITVSTVGIV-----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKEYQKNSQQKI-FIEYIML 102 (205)
Q Consensus 29 ~~~v~T~G~~-----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~V-~ir~~lI 102 (205)
++.+.|..+. ..++.+.+.+.+ .+-+...... ... ......+++.+.++ +.|.++ .+..+.
T Consensus 8 ~lg~~~~~~~~~~~~~~l~~~~~~G~~-~vEl~~~~~~----~~~---~~~~~~~~~~~~~~----~~gl~~~~~~~~~- 74 (272)
T 2q02_A 8 RFCINRKIAPGLSIEAFFRLVKRLEFN-KVELRNDMPS----GSV---TDDLNYNQVRNLAE----KYGLEIVTINAVY- 74 (272)
T ss_dssp GEEEEGGGCTTSCHHHHHHHHHHTTCC-EEEEETTSTT----SST---TTTCCHHHHHHHHH----HTTCEEEEEEEET-
T ss_pred hhhhcccccCCCCHHHHHHHHHHcCCC-EEEeeccccc----ccc---ccccCHHHHHHHHH----HcCCeEEechhhh-
Confidence 5667665432 246666666643 4444432210 000 00123344443333 456555 444332
Q ss_pred CCCCCC----HHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEeccc
Q 028700 103 DGVNDE----EQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQ 168 (205)
Q Consensus 103 pGiNDs----~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i~~~ 168 (205)
.+|+. .+.+++.+++++.+++ .|.+.|... + ...+.....+.+.++.+.++ ++|+.+.+.+.
T Consensus 75 -~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~-~-~~~~~~~~~~~l~~l~~~a~-~~gv~l~~E~~ 141 (272)
T 2q02_A 75 -PFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLND-G-TIVPPEVTVEAIKRLSDLFA-RYDIQGLVEPL 141 (272)
T ss_dssp -TTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCS-S-BCCCHHHHHHHHHHHHHHHH-TTTCEEEECCC
T ss_pred -ccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCC-c-hhHHHHHHHHHHHHHHHHHH-HcCCEEEEEec
Confidence 34432 2345666666666664 343322211 0 01111111344555555666 57776666543
No 103
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=22.17 E-value=71 Score=23.32 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCc-HHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGI-VHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~-~~~~~~l~~ 46 (205)
+.+.++|+.+++.|+ .+++-||+. ...++.++.
T Consensus 71 ~g~~e~L~~L~~~G~-----~v~ivT~~~~~~~~~~~l~ 104 (187)
T 2wm8_A 71 PEVPEVLKRLQSLGV-----PGAAASRTSEIEGANQLLE 104 (187)
T ss_dssp TTHHHHHHHHHHHTC-----CEEEEECCSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCc-----eEEEEeCCCChHHHHHHHH
Confidence 558899999998887 799999987 465555554
No 104
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=21.87 E-value=1.7e+02 Score=24.15 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhhcCC
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHSDLP 49 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~~~~ 49 (205)
+.+.++++.+++.|. .+.+=+.|..+.+..+.+.+.
T Consensus 231 p~~~~i~~~i~~~g~-----~~i~~~~G~~~~l~~l~~~g~ 266 (359)
T 2inf_A 231 PVMNRIFSELAKENV-----PLIMFGVGASHLAGDWHDLPL 266 (359)
T ss_dssp HHHHHHHHHHGGGCS-----CEEEECTTCGGGHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCC-----cEEEEcCCcHHHHHHHHHhCC
Confidence 445566667765543 355556777556777777664
No 105
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=21.79 E-value=2.2e+02 Score=23.84 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCc-eEEEeecCCCCCCCCc-----cC---C---cHHHHHHHHHHHHhcCCceEEe
Q 028700 110 QHAHQLGKLLETFQV-VVNLIPFNPIGSVSQF-----RT---S---SDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 110 e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~-----~~---~---~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
..+.+-+++++++++ .|.|.|..+......| .. | +.++++++.+.+. +.|+.+.+
T Consensus 21 ~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h-~~Gi~Vil 87 (405)
T 1ht6_A 21 NMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALH-GKGVQAIA 87 (405)
T ss_dssp HHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHH-HCCCEEEE
Confidence 445555678888885 7888888876422222 11 2 3688888888888 79998865
No 106
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=21.64 E-value=3.2e+02 Score=21.99 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHhc---CCcEEE-EEEEeCCCCCCHHHHHHHH
Q 028700 76 PLEKLMNALKEYQKNS---QQKIFI-EYIMLDGVNDEEQHAHQLG 116 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~~---~~~V~i-r~~lIpGiNDs~e~i~~l~ 116 (205)
+-+.+.+-++..++.. +.+|++ ++|---|+|-+.+.+.+|+
T Consensus 114 s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La 158 (294)
T 3b4u_A 114 SDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLK 158 (294)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHH
Confidence 4556666666555555 566544 6666667777777666665
No 107
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=21.62 E-value=64 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFH 45 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~ 45 (205)
+.+.++|+.+++.|+ +++|-||+.....+.++
T Consensus 133 ~g~~~~L~~L~~~g~-----~~~i~Tn~~~~~~~~~l 164 (261)
T 1yns_A 133 ADVVPAVRKWREAGM-----KVYIYSSGSVEAQKLLF 164 (261)
T ss_dssp TTHHHHHHHHHHTTC-----EEEEECSSCHHHHHHHH
T ss_pred cCHHHHHHHHHhCCC-----eEEEEeCCCHHHHHHHH
Confidence 568899999998887 89999999876554443
No 108
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=21.49 E-value=40 Score=24.79 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCC
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVG 36 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G 36 (205)
+.+.++|+.|++.|+ .++|-||+
T Consensus 45 pg~~e~L~~L~~~G~-----~l~i~Tn~ 67 (176)
T 2fpr_A 45 PGVIPQLLKLQKAGY-----KLVMITNQ 67 (176)
T ss_dssp TTHHHHHHHHHHTTE-----EEEEEEEC
T ss_pred ccHHHHHHHHHHCCC-----EEEEEECC
Confidence 568899999998887 89998888
No 109
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=21.44 E-value=3.3e+02 Score=22.12 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHhcCCcEE-EEEEEeCCCCCCHHHHHHHH
Q 028700 75 FPLEKLMNALKEYQKNSQQKIF-IEYIMLDGVNDEEQHAHQLG 116 (205)
Q Consensus 75 ~~~~~i~~~l~~~~~~~~~~V~-ir~~lIpGiNDs~e~i~~l~ 116 (205)
.+-+.+.+-++..++..+.+|+ .++|. .|+|-+.+.+.+|+
T Consensus 120 ~s~~~l~~~f~~va~a~~lPiilYn~P~-tg~~l~~~~~~~La 161 (309)
T 3fkr_A 120 VPEAQIFEFYARVSDAIAIPIMVQDAPA-SGTALSAPFLARMA 161 (309)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECGG-GCCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCCCHHHHHHHH
Confidence 3556677766666665666654 46665 78887776655555
No 110
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=21.27 E-value=55 Score=20.40 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHhcC
Q 028700 106 NDEEQHAHQLGKLLETF 122 (205)
Q Consensus 106 NDs~e~i~~l~~~l~~~ 122 (205)
.-+++++.+|+.|+..+
T Consensus 70 ~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 70 GLSDAELKALADFILSH 86 (87)
T ss_dssp GCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 45788999999999875
No 111
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=21.23 E-value=60 Score=27.32 Aligned_cols=93 Identities=6% Similarity=0.086 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcH-HHHHHHhhcCCCceEEEeecCCCHHhhhhhcCCCCCCCHHHHHHHHHH
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIV-HAINKFHSDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMNALKE 86 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~-~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~~~~~~~~~~~i~~~l~~ 86 (205)
.+.+.+.++.+++.|+ +++++--|.. ..+..|....+| .|-+| ...-+.+.. ......+++.+-.
T Consensus 275 ~~~~~~~l~~l~~~G~-----~ialDDfG~g~ssl~~L~~l~~d-~iKiD-----~~~v~~~~~---~~~~~~~v~~i~~ 340 (400)
T 3sy8_A 275 PASSLENLVRLWIMGC-----GLAMDDFGAGYSSLDRLCEFPFS-QIKLD-----RTFVQKMKT---QPRSCAVISSVVA 340 (400)
T ss_dssp CHHHHHHHHHHHHHTC-----EEEEEEECSCSGGGGSSSSCCCS-EEEEC-----THHHHHHHH---CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-----EEEEECCCCchhhHHHHHhCCCC-EEEEC-----HHHHhhhhc---ChhHHHHHHHHHH
Confidence 4556666666766666 6777654432 223333332222 33343 222222211 1123456677766
Q ss_pred HHHhcCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCc
Q 028700 87 YQKNSQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQV 124 (205)
Q Consensus 87 ~~~~~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~ 124 (205)
+++..|.+| +..||-+ ++++ ++++.+++
T Consensus 341 ~a~~l~~~v-----vaEGVEt-~~~~----~~l~~~g~ 368 (400)
T 3sy8_A 341 LAQALGISL-----VVEGVES-DEQR----VRLIELGC 368 (400)
T ss_dssp HHHHHTCEE-----EECCCCC-HHHH----HHHHHHTC
T ss_pred HHHHcCCeE-----EEecCCc-HHHH----HHHHHcCC
Confidence 776677654 4678754 4444 45566664
No 112
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=21.05 E-value=2.8e+02 Score=21.10 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=64.9
Q ss_pred cEEEEcCCcH-----HHHHHHhhcCCCceEEEeecCCCHHhhhhhc-CCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEEe
Q 028700 29 RITVSTVGIV-----HAINKFHSDLPGLNLAVSLHAPVQDVRCQIM-PAARAFPLEKLMNALKEYQKNSQQKIFIEYIML 102 (205)
Q Consensus 29 ~~~v~T~G~~-----~~~~~l~~~~~~~~l~~slk~~d~~~~~~i~-~~~~~~~~~~i~~~l~~~~~~~~~~V~ir~~lI 102 (205)
++.++|..+. ..++.+.+.+.+ .+-+......+..|.... +. ..+-+. .+.+++.+++.|.++..-.+.
T Consensus 11 klg~~~~~~~~~~~~~~l~~~~~~G~~-~vEl~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~~~gl~i~~~~~~- 85 (262)
T 3p6l_A 11 RLGMQSYSFHLFPLTEALDKTQELGLK-YIEIYPGHKLGGKWGDKVFDF--NLDAQT-QKEIKELAASKGIKIVGTGVY- 85 (262)
T ss_dssp EEEEEGGGGTTSCHHHHHHHHHHTTCC-EEEECTTEECCGGGTTCEEST--TCCHHH-HHHHHHHHHHTTCEEEEEEEE-
T ss_pred EEEEEecccCCCCHHHHHHHHHHcCCC-EEeecCCcccccccccccccc--cCCHHH-HHHHHHHHHHcCCeEEEEecc-
Confidence 7888887764 246777777653 444443221111110000 11 112222 333444555577665444332
Q ss_pred CCCCCCHHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCccCCcHHHHHHHHHHHHhcCCceEEeccccc
Q 028700 103 DGVNDEEQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFRTSSDDKVSSFQKILRGSYNIRTTVRKQMG 170 (205)
Q Consensus 103 pGiNDs~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~~~~~e~l~~~~~~l~~~~Gi~~~i~~~~g 170 (205)
.|.+.+++++.+++++.+++ .|.+ |+ | .+.++.+.+.++ ++|+.+.+.+..+
T Consensus 86 --~~~~~~~~~~~i~~A~~lGa~~v~~---~~-~---------~~~~~~l~~~a~-~~gv~l~~En~~~ 138 (262)
T 3p6l_A 86 --VAEKSSDWEKMFKFAKAMDLEFITC---EP-A---------LSDWDLVEKLSK-QYNIKISVHNHPQ 138 (262)
T ss_dssp --CCSSTTHHHHHHHHHHHTTCSEEEE---CC-C---------GGGHHHHHHHHH-HHTCEEEEECCSS
T ss_pred --CCccHHHHHHHHHHHHHcCCCEEEe---cC-C---------HHHHHHHHHHHH-HhCCEEEEEeCCC
Confidence 34566788999999998885 3443 32 2 134466677777 6888877766644
No 113
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=21.03 E-value=1.4e+02 Score=26.57 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCc-eEEEeecCCCCCCCCcc----------CCcHHHHHHHHHHHHhcCCceEEe
Q 028700 109 EQHAHQLGKLLETFQV-VVNLIPFNPIGSVSQFR----------TSSDDKVSSFQKILRGSYNIRTTV 165 (205)
Q Consensus 109 ~e~i~~l~~~l~~~~~-~v~lip~~~~g~~~~~~----------~~~~e~l~~~~~~l~~~~Gi~~~i 165 (205)
-..+.+-+++++++++ .|.|.|..+......|. --+.++++++.+.+- +.||.|.+
T Consensus 172 ~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H-~~Gi~Vil 238 (585)
T 1wzl_A 172 LKGVIDRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAH-RRGIKIIL 238 (585)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHH-TTTCEEEE
T ss_pred HHHHHHHhHHHHHcCCCEEEECCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHH-HCCCEEEE
Confidence 3445445688898985 78898887653222221 125788889988888 79998865
No 114
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=20.90 E-value=66 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCcHHHHHHHhh
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGIVHAINKFHS 46 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~~~~~l~~ 46 (205)
+.+.++|+.+++.|+ .++|-||+....++.++.
T Consensus 89 ~g~~~~l~~L~~~g~-----~~~i~T~~~~~~~~~~l~ 121 (225)
T 1nnl_A 89 PGIRELVSRLQERNV-----QVFLISGGFRSIVEHVAS 121 (225)
T ss_dssp TTHHHHHHHHHHTTC-----EEEEEEEEEHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCC-----cEEEEeCChHHHHHHHHH
Confidence 448899999999888 899999988765555554
No 115
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=20.83 E-value=2.6e+02 Score=21.36 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHhcCCc
Q 028700 108 EEQHAHQLGKLLETFQV 124 (205)
Q Consensus 108 s~e~i~~l~~~l~~~~~ 124 (205)
++++++++.+.++..+.
T Consensus 47 ~~~~~~~~~~~~~~~gl 63 (270)
T 3aam_A 47 SPAEVEAFRALREASGG 63 (270)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 46788999999988875
No 116
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=20.63 E-value=2.5e+02 Score=26.12 Aligned_cols=51 Identities=10% Similarity=0.246 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCcEEE-EcCCcH-H-H----HHHHhhcCCCceEEEeecCCCH
Q 028700 6 NNYAALVEAVRIMTGLPFQVSPKRITV-STVGIV-H-A----INKFHSDLPGLNLAVSLHAPVQ 62 (205)
Q Consensus 6 lq~~~l~~~l~~lk~~~i~~~~~~~~v-~T~G~~-~-~----~~~l~~~~~~~~l~~slk~~d~ 62 (205)
..+++++++++.+.+.|. ..+++ +|+|.. | . ++.+.+..+ .+-+++|+-|.
T Consensus 258 ~~~e~~~~~a~~l~~~Ga----~~I~l~DT~G~~~P~~v~~lV~~lk~~~p--~~~I~~H~Hnd 315 (718)
T 3bg3_A 258 YSLQYYMGLAEELVRAGT----HILCIKDMAGLLKPTACTMLVSSLRDRFP--DLPLHIHTHDT 315 (718)
T ss_dssp TCHHHHHHHHHHHHHHTC----SEEEEECTTSCCCHHHHHHHHHHHHHHST--TCCEEEECCCT
T ss_pred CCHHHHHHHHHHHHHcCC----CEEEEcCcCCCcCHHHHHHHHHHHHHhCC--CCeEEEEECCC
Confidence 478999999999987655 36887 999976 4 2 444444432 35578887763
No 117
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=20.36 E-value=88 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEEEcCCc
Q 028700 9 AALVEAVRIMTGLPFQVSPKRITVSTVGI 37 (205)
Q Consensus 9 ~~l~~~l~~lk~~~i~~~~~~~~v~T~G~ 37 (205)
+.+.++|+.|++.|+ +++|-||+.
T Consensus 53 pg~~e~L~~L~~~G~-----~~~ivTn~~ 76 (211)
T 2gmw_A 53 DGVIDAMRELKKMGF-----ALVVVTNQS 76 (211)
T ss_dssp TTHHHHHHHHHHTTC-----EEEEEEECT
T ss_pred cCHHHHHHHHHHCCC-----eEEEEECcC
Confidence 458999999999888 899999987
No 118
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=20.33 E-value=1.2e+02 Score=26.31 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEcCCcHH--------HHHHHhhcCC---Cce-EEEeecCCCHHhhhhhcCCCCCC
Q 028700 8 YAALVEAVRIMTGLPFQVSPKRITVSTVGIVH--------AINKFHSDLP---GLN-LAVSLHAPVQDVRCQIMPAARAF 75 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~i~~~~~~~~v~T~G~~~--------~~~~l~~~~~---~~~-l~~slk~~d~~~~~~i~~~~~~~ 75 (205)
.+.+.++++.+.++ +.++-+.|-|+.... .++++.+..+ ++. +.++.-...-. ...|
T Consensus 77 ~~~L~~~I~~~~~~---~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~~~pVi~v~tpgf~gs---~~~G----- 145 (458)
T 3pdi_B 77 DENVVEALKTICER---QNPSVIGLLTTGLSETQGCDLHTALHEFRTQYEEYKDVPIVPVNTPDFSGC---FESG----- 145 (458)
T ss_dssp HHHHHHHHHHHHHH---TCCSEEEEEECHHHHTTCTTHHHHHHHTTTSCCSCSCSCEEEECCCTTSSC---HHHH-----
T ss_pred HHHHHHHHHHHHHh---cCCCEEEEECCcHHHHhcCCHHHHHHHHHHhccccCCCeEEEeeCCCcCCc---hhHH-----
Confidence 35677777777664 245568887766542 2344433210 122 22444333211 1111
Q ss_pred CHHHHHHHHHHHHHh------cCCcEEEEEEEeCCCCCCHHHHHHHHHHHhcCCceEEEee
Q 028700 76 PLEKLMNALKEYQKN------SQQKIFIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIP 130 (205)
Q Consensus 76 ~~~~i~~~l~~~~~~------~~~~V~ir~~lIpGiNDs~e~i~~l~~~l~~~~~~v~lip 130 (205)
.+..++.+-+++.. ...+-.|| +|||.+-+..++.+|.++++.++.+++.+|
T Consensus 146 -~~~a~~al~~~l~~~~~~~~~~~~~~VN--ii~G~~~~~~D~~eik~lL~~~Gi~v~~~~ 203 (458)
T 3pdi_B 146 -FAAAVKAIVETLVPERRDQVGKRPRQVN--VLCSANLTPGDLEYIAESIESFGLRPLLIP 203 (458)
T ss_dssp -HHHHHHHHHHHSSCSSSCTTCCCSSEEE--EEECTTCCHHHHHHHHHHHHTTTCEEEEES
T ss_pred -HHHHHHHHHHHhhccccCcCCCCCCeEE--EEeCCCCChHHHHHHHHHHHHcCCEEEEec
Confidence 23344444332221 11233555 678986678899999999999998888875
No 119
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=20.31 E-value=3.7e+02 Score=22.29 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHH-hcCCcEEE-EEEEeCCCCCCHHHHHHH
Q 028700 76 PLEKLMNALKEYQK-NSQQKIFI-EYIMLDGVNDEEQHAHQL 115 (205)
Q Consensus 76 ~~~~i~~~l~~~~~-~~~~~V~i-r~~lIpGiNDs~e~i~~l 115 (205)
+.+.+.+-++..++ ..+.+|++ ++| --|+|-+.+.+.+|
T Consensus 134 s~~~l~~~f~~IA~aa~~lPiilYn~P-~tg~~l~~e~~~~L 174 (344)
T 2hmc_A 134 VIAAQKAHFKAILSAAPEIPAVIYNSP-YYGFATRADLFFAL 174 (344)
T ss_dssp CHHHHHHHHHHHHHHSTTSCEEEEEBG-GGTBCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEecC-ccCCCcCHHHHHHH
Confidence 45666666666665 45666544 777 77888777766666
No 120
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=20.22 E-value=3.2e+02 Score=22.31 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhcCC
Q 028700 8 YAALVEAVRIMTGLP 22 (205)
Q Consensus 8 ~~~l~~~l~~lk~~~ 22 (205)
++.+.++++.+-+.|
T Consensus 31 ~~~l~~lv~~li~~G 45 (318)
T 3qfe_A 31 LASQERYYAYLARSG 45 (318)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444444444433
Done!