BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028702
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P76219|YDJX_ECOLI TVP38/TMEM64 family membrane protein YdjX OS=Escherichia coli
(strain K12) GN=ydjX PE=3 SV=2
Length = 236
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 132 LTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVS 191
L I G GY+L++ ++ +L +P L ++ G++FG + GT++ I+ T++
Sbjct: 33 LPHLQTLIRQSGFFGYSLYILLFIIATLLLLPGSILVIAGGIVFGPLLGTLLSLIAATLA 92
Query: 192 GS 193
S
Sbjct: 93 SS 94
>sp|P73471|PUR7_SYNY3 Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purC
PE=3 SV=1
Length = 264
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 123 VYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPA--IPLTMSAGLLFGSVTG 180
++KD AF Q G I+G G A+ A++ LE L IP I + +L +V
Sbjct: 40 IFKDDATAFNAQKKGQIQGKGAINCAISAALFRWLETLGIPTHYIDCPQNDQMLVKAVNI 99
Query: 181 T-IIVSISGTVSGSKC 195
+ V + +GS C
Sbjct: 100 IPLEVVVRNIAAGSLC 115
>sp|P67116|Y641_MYCBO TVP38/TMEM64 family membrane protein Mb0641c OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb0641c PE=3 SV=1
Length = 246
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 108 VLLLVVVGGFGTMGYVY----KDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIP 163
++ LVV GF +G Y D I+ + G + GPA +V V A L L +P
Sbjct: 16 IVRLVVFAGF-LVGMFYLVAATDVID--VAAVRGAVSATGPAAPLTYVVVSAVLGALFVP 72
Query: 164 AIPLTMSAGLLFGSVTGTIIVSISGTV 190
L S+GLLFG + G + V++ TV
Sbjct: 73 GPILAASSGLLFGPLVG-VFVTLGATV 98
>sp|P67115|Y625_MYCTU TVP38/TMEM64 family membrane protein Rv0625c/MT0653
OS=Mycobacterium tuberculosis GN=Rv0625c PE=3 SV=1
Length = 246
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 108 VLLLVVVGGFGTMGYVY----KDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIP 163
++ LVV GF +G Y D I+ + G + GPA +V V A L L +P
Sbjct: 16 IVRLVVFAGF-LVGMFYLVAATDVID--VAAVRGAVSATGPAAPLTYVVVSAVLGALFVP 72
Query: 164 AIPLTMSAGLLFGSVTGTIIVSISGTV 190
L S+GLLFG + G + V++ TV
Sbjct: 73 GPILAASSGLLFGPLVG-VFVTLGATV 98
>sp|Q9Y5F6|PCDGM_HUMAN Protocadherin gamma-C5 OS=Homo sapiens GN=PCDHGC5 PE=2 SV=1
Length = 944
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 50/180 (27%)
Query: 4 LVLRP---QYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSSLKQT----------KK 50
+ LRP Q HC++ +CF +S+ F F++P S + T +
Sbjct: 762 VTLRPTDSQSHCYR--TCFSPASDG--------SDFTFLRPLSVQQPTALALEPDAIRSR 811
Query: 51 QNTLQKSTTNAPRSLGWFF----------NPKGDDDDN--NNR-----IQGNGMDAESEG 93
NTL++ + AP + W F + GDD NN+ +Q + + SE
Sbjct: 812 SNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA 871
Query: 94 LEGDTAVKGSILAGVL-LLVVVGGFGTMGYV--YKDQI-----NAFLTQFSGFIEGYGPA 145
+G + + G AG + L G T+ +V Y+ + NA LT +G +G PA
Sbjct: 872 ADGSSTLGGG--AGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 929
>sp|Q5DRA2|PCDGM_PANTR Protocadherin gamma-C5 OS=Pan troglodytes GN=PCDHGC5 PE=3 SV=1
Length = 944
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 50/180 (27%)
Query: 4 LVLRP---QYHCHQPPSCFLTSSNSFIHSFKPHRRFHFVKPCSSLKQT----------KK 50
+ LRP Q HC++ +CF +S+ F F++P S + T +
Sbjct: 762 VTLRPTDSQSHCYR--TCFSPASDG--------SDFTFLRPLSVQQPTALALEPDAIRSR 811
Query: 51 QNTLQKSTTNAPRSLGWFF----------NPKGDDDDN--NNR-----IQGNGMDAESEG 93
NTL++ + AP + W F + GDD NN+ +Q + + SE
Sbjct: 812 SNTLRERSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEA 871
Query: 94 LEGDTAVKGSILAGVL-LLVVVGGFGTMGYV--YKDQI-----NAFLTQFSGFIEGYGPA 145
+G + + G AG + L G T+ +V Y+ + NA LT +G +G PA
Sbjct: 872 ADGSSTLGGG--AGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPA 929
>sp|Q55909|Y305_SYNY3 TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
Length = 209
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 138 FIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKC 195
+I+G G F+ +Y ++ +P LT+ AG++FG + G+I V I T+ +
Sbjct: 11 WIDGLGTWAAIAFMLLYTVATVVFLPGSILTLGAGVVFGVILGSIYVFIGATLGATAA 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,849,176
Number of Sequences: 539616
Number of extensions: 3227655
Number of successful extensions: 9372
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9357
Number of HSP's gapped (non-prelim): 26
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)