Query 028702
Match_columns 205
No_of_seqs 171 out of 1067
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 15:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 99.6 1.5E-15 3.3E-20 131.3 12.1 79 127-205 30-109 (223)
2 KOG3140 Predicted membrane pro 98.4 1.7E-07 3.8E-12 84.0 4.1 74 132-205 82-156 (275)
3 PF09335 SNARE_assoc: SNARE as 98.3 9E-07 2E-11 67.1 5.2 43 162-204 1-43 (123)
4 PRK10847 hypothetical protein; 98.1 1.6E-05 3.5E-10 68.2 8.4 71 134-204 17-98 (219)
5 COG0586 DedA Uncharacterized m 97.3 0.0011 2.3E-08 56.8 7.5 45 160-204 34-83 (208)
6 COG1238 Predicted membrane pro 95.8 0.042 9E-07 46.1 7.5 57 148-204 21-78 (161)
7 COG4852 Predicted membrane pro 94.2 0.75 1.6E-05 37.4 10.0 68 133-204 32-132 (134)
8 PLN02953 phosphatidate cytidyl 92.0 3.1 6.7E-05 39.8 12.2 19 187-205 277-295 (403)
9 PF07155 ECF-ribofla_trS: ECF- 86.8 2.3 5E-05 34.3 6.2 32 164-195 38-69 (169)
10 TIGR02359 thiW thiW protein. L 85.7 2.7 5.8E-05 35.2 6.2 31 164-194 34-64 (160)
11 COG0398 Uncharacterized conser 84.8 21 0.00046 31.1 11.6 55 116-176 99-159 (223)
12 PRK01844 hypothetical protein; 84.6 1 2.2E-05 33.4 2.9 28 177-204 3-30 (72)
13 PF05915 DUF872: Eukaryotic pr 81.1 3.3 7.1E-05 32.9 4.7 17 153-169 79-95 (115)
14 PRK09609 hypothetical protein; 80.4 4.3 9.4E-05 37.6 5.9 29 166-194 45-73 (312)
15 PF06695 Sm_multidrug_ex: Puta 79.8 10 0.00022 30.0 7.1 53 134-193 64-120 (121)
16 PF11947 DUF3464: Protein of u 79.1 9.4 0.0002 32.0 7.0 24 162-185 94-118 (153)
17 PF04246 RseC_MucC: Positive r 78.0 6.7 0.00015 31.0 5.6 24 181-204 96-119 (135)
18 TIGR02831 spo_II_M stage II sp 78.0 41 0.00089 28.6 10.8 26 159-184 87-113 (200)
19 PF12822 DUF3816: Protein of u 77.9 3 6.4E-05 33.4 3.6 31 164-194 31-61 (172)
20 PRK00523 hypothetical protein; 77.8 2.5 5.4E-05 31.4 2.8 25 180-204 7-31 (72)
21 PRK12821 aspartyl/glutamyl-tRN 76.9 26 0.00056 34.3 10.2 28 164-191 98-125 (477)
22 PF08006 DUF1700: Protein of u 76.1 30 0.00064 28.5 9.2 25 177-202 140-164 (181)
23 PF11085 YqhR: Conserved membr 74.9 5.8 0.00013 34.0 4.7 14 143-156 66-79 (173)
24 PF04956 TrbC: TrbC/VIRB2 fami 72.3 25 0.00055 25.9 7.2 29 126-156 36-64 (99)
25 PF03672 UPF0154: Uncharacteri 72.0 2.9 6.3E-05 30.4 1.9 22 183-204 2-23 (64)
26 PRK10862 SoxR reducing system 71.3 9.1 0.0002 31.6 5.0 25 180-204 102-126 (154)
27 PRK13661 hypothetical protein; 70.7 12 0.00026 31.9 5.7 25 167-191 43-67 (182)
28 PF08372 PRT_C: Plant phosphor 70.4 49 0.0011 27.7 9.2 47 127-173 77-125 (156)
29 PF06738 DUF1212: Protein of u 69.6 35 0.00076 28.0 8.2 81 121-201 80-173 (193)
30 TIGR00930 2a30 K-Cl cotranspor 68.7 11 0.00024 39.5 6.0 11 175-185 157-167 (953)
31 PF09512 ThiW: Thiamine-precur 67.7 8.9 0.00019 32.1 4.2 60 143-202 43-115 (150)
32 PF09026 CENP-B_dimeris: Centr 66.5 1.9 4.1E-05 33.9 0.0 15 89-103 31-45 (101)
33 PF07857 DUF1632: CEO family ( 64.8 11 0.00024 33.7 4.5 20 107-126 184-203 (254)
34 PF06800 Sugar_transport: Suga 63.9 46 0.001 30.2 8.3 36 164-200 194-229 (269)
35 COG4858 Uncharacterized membra 62.8 19 0.00041 31.8 5.4 31 147-177 172-208 (226)
36 PRK10263 DNA translocase FtsK; 61.6 51 0.0011 36.3 9.3 16 187-202 143-158 (1355)
37 PRK05702 flhB flagellar biosyn 61.1 60 0.0013 30.4 8.8 14 161-174 93-106 (359)
38 PF01102 Glycophorin_A: Glycop 60.7 12 0.00026 30.2 3.6 26 171-202 67-92 (122)
39 COG2261 Predicted membrane pro 60.3 22 0.00048 27.0 4.8 38 166-203 38-80 (82)
40 PF04226 Transgly_assoc: Trans 58.9 24 0.00052 23.7 4.3 37 168-204 8-48 (48)
41 COG5336 Uncharacterized protei 58.2 69 0.0015 25.8 7.4 25 136-160 66-90 (116)
42 COG3763 Uncharacterized protei 56.8 12 0.00026 27.7 2.8 26 178-203 4-29 (71)
43 PF01944 DUF95: Integral membr 56.8 99 0.0021 24.6 11.5 31 151-181 60-90 (173)
44 COG4064 MtrG Tetrahydromethano 56.6 16 0.00034 27.3 3.3 23 172-194 51-73 (75)
45 COG2978 AbgT Putative p-aminob 56.1 16 0.00034 36.1 4.1 45 146-198 305-355 (516)
46 PRK13109 flhB flagellar biosyn 55.8 83 0.0018 29.5 8.8 12 161-172 95-106 (358)
47 COG3086 RseC Positive regulato 55.5 30 0.00065 29.0 5.2 31 171-204 96-126 (150)
48 PF06781 UPF0233: Uncharacteri 55.1 38 0.00082 25.9 5.3 52 95-156 27-78 (87)
49 COG3275 LytS Putative regulato 55.0 50 0.0011 32.9 7.4 40 165-204 71-128 (557)
50 PRK15049 L-asparagine permease 54.8 40 0.00086 32.2 6.7 33 72-104 3-36 (499)
51 PF07332 DUF1469: Protein of u 54.7 93 0.002 23.6 9.1 27 176-202 70-96 (121)
52 PF02417 Chromate_transp: Chro 54.7 59 0.0013 26.6 6.9 58 137-194 30-88 (169)
53 PF13807 GNVR: G-rich domain o 54.7 17 0.00036 26.4 3.2 25 162-186 55-79 (82)
54 PRK10599 calcium/sodium:proton 54.4 2E+02 0.0043 27.3 11.3 26 135-163 245-270 (366)
55 PF03773 DUF318: Predicted per 53.9 1.7E+02 0.0036 26.3 10.8 21 136-156 215-235 (307)
56 COG1377 FlhB Flagellar biosynt 53.6 93 0.002 29.5 8.7 14 161-174 93-106 (363)
57 PF11085 YqhR: Conserved membr 51.9 53 0.0011 28.2 6.2 13 146-158 73-85 (173)
58 PF05072 Herpes_UL43: Herpesvi 51.7 1.3E+02 0.0028 28.6 9.4 28 173-200 317-344 (373)
59 COG4732 Predicted membrane pro 51.5 20 0.00044 30.5 3.7 23 164-186 40-62 (177)
60 PF03248 Rer1: Rer1 family; I 51.3 67 0.0014 27.6 6.8 13 67-79 65-77 (176)
61 KOG2348 Urea transporter [Amin 50.9 14 0.0003 36.8 2.9 10 66-75 512-521 (667)
62 PRK12468 flhB flagellar biosyn 49.4 1E+02 0.0022 29.3 8.3 14 161-174 93-106 (386)
63 PF09945 DUF2177: Predicted me 49.2 1.4E+02 0.0031 24.2 11.0 46 133-178 33-86 (128)
64 TIGR00819 ydaH p-Aminobenzoyl- 49.0 1.1E+02 0.0023 30.4 8.7 21 153-173 307-327 (513)
65 KOG2533 Permease of the major 49.0 1.1E+02 0.0024 29.7 8.8 12 147-158 87-98 (495)
66 TIGR00261 traB pheromone shutd 48.1 2.5E+02 0.0055 26.7 11.4 45 103-148 240-284 (380)
67 PRK10249 phenylalanine transpo 46.3 1.2E+02 0.0026 28.4 8.3 14 172-185 92-105 (458)
68 TIGR00378 cax calcium/proton e 46.3 2.4E+02 0.0052 25.9 12.9 17 148-164 239-255 (349)
69 PRK05415 hypothetical protein; 46.0 82 0.0018 29.6 7.1 11 137-147 91-101 (341)
70 PRK01026 tetrahydromethanopter 45.9 35 0.00075 25.7 3.8 23 171-193 50-72 (77)
71 PRK09928 choline transport pro 44.7 61 0.0013 33.2 6.4 41 119-159 32-72 (679)
72 PF01024 Colicin: Colicin pore 44.5 2.1E+02 0.0046 24.8 8.9 60 132-198 115-175 (187)
73 PF07290 DUF1449: Protein of u 43.6 1.3E+02 0.0028 26.1 7.5 41 158-202 74-115 (202)
74 PRK01844 hypothetical protein; 43.0 1.1E+02 0.0024 22.8 5.9 10 135-144 29-38 (72)
75 PF09451 ATG27: Autophagy-rela 42.7 43 0.00092 29.7 4.5 15 103-117 204-218 (268)
76 COG2981 CysZ Uncharacterized p 42.7 1.3E+02 0.0027 27.4 7.4 55 125-181 47-102 (250)
77 PF13829 DUF4191: Domain of un 42.4 2.3E+02 0.0049 25.3 8.9 56 137-201 18-74 (224)
78 TIGR00937 2A51 chromate transp 42.2 82 0.0018 29.4 6.5 64 137-200 231-295 (368)
79 PTZ00127 cytochrome c oxidase 42.2 1.2E+02 0.0026 28.7 7.7 6 74-79 39-44 (403)
80 PRK10845 colicin V production 42.0 2E+02 0.0042 23.7 10.6 24 165-188 94-117 (162)
81 PRK12287 tqsA pheromone autoin 41.8 2E+02 0.0043 26.1 8.8 52 134-185 192-249 (344)
82 KOG2563 Permease of the major 41.7 1.4E+02 0.0031 29.4 8.2 11 95-105 38-48 (480)
83 PF08566 Pam17: Mitochondrial 41.7 74 0.0016 27.3 5.6 17 167-183 86-102 (173)
84 PF04156 IncA: IncA protein; 41.7 84 0.0018 25.8 5.9 18 172-189 34-51 (191)
85 PF07330 DUF1467: Protein of u 41.4 61 0.0013 24.6 4.6 12 118-129 71-82 (85)
86 PF03606 DcuC: C4-dicarboxylat 41.1 1.1E+02 0.0025 29.2 7.4 12 134-145 310-321 (465)
87 PF09335 SNARE_assoc: SNARE as 41.1 1.4E+02 0.0031 21.9 11.2 35 134-174 61-95 (123)
88 PF06738 DUF1212: Protein of u 40.2 1.9E+02 0.0041 23.7 7.8 65 127-201 83-148 (193)
89 TIGR01149 mtrG N5-methyltetrah 40.2 29 0.00063 25.7 2.5 22 170-191 46-67 (70)
90 KOG1824 TATA-binding protein-i 39.7 34 0.00073 36.7 3.8 15 93-107 341-355 (1233)
91 COG0342 SecD Preprotein transl 39.4 2.4E+02 0.0051 27.8 9.4 27 176-202 464-491 (506)
92 PF05684 DUF819: Protein of un 39.2 3.3E+02 0.0072 25.6 12.8 51 146-202 266-317 (378)
93 PF11139 DUF2910: Protein of u 39.2 2.3E+02 0.0051 23.8 9.1 29 119-147 169-197 (214)
94 TIGR02872 spore_ytvI sporulati 38.7 1.8E+02 0.004 25.3 7.9 49 135-183 205-259 (341)
95 PF03030 H_PPase: Inorganic H+ 38.7 2.2E+02 0.0047 29.3 9.2 21 175-195 74-94 (682)
96 PF04210 MtrG: Tetrahydrometha 38.4 34 0.00074 25.3 2.7 21 171-191 47-67 (70)
97 PF03806 ABG_transport: AbgT p 37.7 32 0.0007 33.9 3.2 26 147-172 294-319 (502)
98 KOG2927 Membrane component of 37.7 22 0.00048 33.7 2.0 6 159-164 204-209 (372)
99 PF04893 Yip1: Yip1 domain; I 37.7 1.9E+02 0.004 22.2 8.1 24 181-204 70-93 (172)
100 PF03616 Glt_symporter: Sodium 37.5 1.5E+02 0.0032 27.7 7.4 19 162-180 272-290 (368)
101 PF08006 DUF1700: Protein of u 37.0 2.3E+02 0.0051 23.1 8.6 24 178-201 148-171 (181)
102 PF12270 Cyt_c_ox_IV: Cytochro 37.0 1.9E+02 0.0042 23.8 7.2 25 91-115 80-104 (137)
103 PF03596 Cad: Cadmium resistan 36.3 1.5E+02 0.0032 25.6 6.7 23 130-152 150-173 (191)
104 PF13488 Gly-zipper_Omp: Glyci 36.0 96 0.0021 20.8 4.4 37 168-204 6-44 (46)
105 KOG3547 Bestrophin (Best vitel 35.9 1.2E+02 0.0026 29.6 6.7 64 97-160 25-90 (450)
106 PF12729 4HB_MCP_1: Four helix 35.6 1.2E+02 0.0027 22.8 5.6 29 106-134 11-39 (181)
107 TIGR00927 2A1904 K+-dependent 35.4 7.2 0.00016 41.4 -1.7 13 143-155 943-955 (1096)
108 PF06609 TRI12: Fungal trichot 35.1 2.7E+02 0.006 27.9 9.3 6 153-158 86-91 (599)
109 KOG3415 Putative Rab5-interact 35.1 82 0.0018 25.7 4.6 12 166-177 74-85 (129)
110 PF05884 ZYG-11_interact: Inte 35.0 68 0.0015 29.8 4.6 46 150-195 102-147 (299)
111 PF14163 SieB: Superinfection 34.9 1.3E+02 0.0028 24.1 5.9 34 156-189 9-46 (151)
112 PRK11026 ftsX cell division AB 34.8 3.5E+02 0.0076 24.5 12.1 25 180-204 280-304 (309)
113 PF04931 DNA_pol_phi: DNA poly 34.8 27 0.00059 35.5 2.3 6 98-103 702-707 (784)
114 PRK11677 hypothetical protein; 34.7 1.4E+02 0.003 24.5 5.9 18 107-124 8-25 (134)
115 TIGR02762 TraL_TIGR type IV co 34.6 66 0.0014 24.4 3.9 29 165-195 22-50 (95)
116 PF13038 DUF3899: Domain of un 34.6 21 0.00046 26.3 1.2 15 98-112 65-79 (92)
117 TIGR00846 caca2 calcium/proton 34.0 3.9E+02 0.0084 24.8 12.6 16 149-164 256-271 (365)
118 PF03023 MVIN: MviN-like prote 33.9 2E+02 0.0044 27.0 7.8 32 167-198 140-174 (451)
119 COG4720 Predicted membrane pro 33.7 75 0.0016 27.4 4.4 28 166-193 42-69 (177)
120 COG1292 BetT Choline-glycine b 33.4 2.3E+02 0.005 28.4 8.3 44 117-160 25-68 (537)
121 PF07456 Hpre_diP_synt_I: Hept 33.2 91 0.002 25.9 4.7 35 168-202 53-89 (148)
122 TIGR01129 secD protein-export 32.7 1.2E+02 0.0026 28.6 6.1 27 176-202 369-396 (397)
123 TIGR00937 2A51 chromate transp 32.4 1.7E+02 0.0036 27.3 6.9 54 139-192 24-78 (368)
124 PF15383 TMEM237: Transmembran 32.0 1.9E+02 0.0042 25.9 7.0 53 107-159 98-151 (253)
125 PF03390 2HCT: 2-hydroxycarbox 32.0 4.8E+02 0.01 25.3 11.7 24 180-203 334-358 (414)
126 PF14110 DUF4282: Domain of un 31.8 2.2E+02 0.0047 21.2 6.5 28 173-201 41-68 (90)
127 PF03547 Mem_trans: Membrane t 31.6 3.8E+02 0.0083 24.0 9.7 26 175-200 60-85 (385)
128 PRK10847 hypothetical protein; 31.6 3.3E+02 0.0071 23.2 9.1 17 131-147 113-129 (219)
129 PF02632 BioY: BioY family; I 31.5 1.7E+02 0.0038 23.8 6.2 32 149-180 29-69 (148)
130 PF01004 Flavi_M: Flavivirus e 31.4 56 0.0012 24.3 2.9 37 122-158 19-55 (75)
131 PRK10929 putative mechanosensi 31.4 2.7E+02 0.0058 30.3 8.9 35 161-195 531-566 (1109)
132 PRK03356 L-carnitine/gamma-but 31.1 2.6E+02 0.0056 27.6 8.2 40 119-158 27-66 (504)
133 PF11449 DUF2899: Protein of u 31.0 2.1E+02 0.0046 26.5 7.2 16 135-150 210-225 (298)
134 COG2059 ChrA Chromate transpor 31.0 2.4E+02 0.0053 24.3 7.2 59 138-196 36-95 (195)
135 PF15451 DUF4632: Domain of un 30.4 42 0.00091 24.5 2.0 6 98-103 29-34 (71)
136 PF06198 DUF999: Protein of un 30.1 97 0.0021 25.3 4.3 28 131-158 107-139 (143)
137 PF11337 DUF3139: Protein of u 30.1 2.2E+02 0.0048 20.8 6.3 18 127-144 32-49 (85)
138 PRK00523 hypothetical protein; 29.9 2.2E+02 0.0048 21.2 5.8 11 135-145 30-40 (72)
139 PF05756 S-antigen: S-antigen 29.8 38 0.00082 25.9 1.8 10 66-75 44-53 (94)
140 PHA03265 envelope glycoprotein 29.6 45 0.00098 31.8 2.7 72 42-114 291-367 (402)
141 PF13886 DUF4203: Domain of un 29.6 3.4E+02 0.0073 22.8 9.3 17 166-182 55-71 (210)
142 COG1972 NupC Nucleoside permea 29.5 2.8E+02 0.006 26.9 7.9 19 59-77 201-221 (404)
143 COG1987 FliQ Flagellar biosynt 29.4 2.7E+02 0.0058 21.5 8.4 30 158-187 48-77 (89)
144 KOG1281 Na+/dicarboxylate, Na+ 29.3 78 0.0017 31.9 4.3 86 113-198 439-529 (586)
145 PRK09272 hypothetical protein; 29.3 2.9E+02 0.0062 21.8 7.2 19 99-117 25-43 (109)
146 PRK12369 putative transporter; 29.2 4.6E+02 0.0099 24.1 9.8 20 185-204 176-195 (326)
147 PRK13707 conjugal transfer pil 28.9 1E+02 0.0022 23.9 4.1 34 165-200 28-61 (101)
148 PF12794 MscS_TM: Mechanosensi 28.8 55 0.0012 30.1 3.0 63 74-138 276-340 (340)
149 COG0628 yhhT Predicted permeas 28.8 3.5E+02 0.0076 24.4 8.2 42 133-174 203-245 (355)
150 TIGR00383 corA magnesium Mg(2+ 28.6 1.2E+02 0.0027 26.6 5.2 49 153-201 260-314 (318)
151 PRK00159 putative septation in 28.3 1.8E+02 0.0039 22.3 5.3 19 138-156 60-78 (87)
152 PRK10692 hypothetical protein; 28.2 1.1E+02 0.0023 23.8 4.0 28 165-192 38-65 (92)
153 PF03066 Nucleoplasmin: Nucleo 27.8 20 0.00043 29.6 0.0 7 41-47 65-71 (149)
154 COG2966 Uncharacterized conser 27.8 2.9E+02 0.0062 24.7 7.3 70 119-200 100-169 (250)
155 PF05297 Herpes_LMP1: Herpesvi 27.8 20 0.00043 33.6 0.0 20 143-162 135-154 (381)
156 PF14012 DUF4229: Protein of u 27.8 1.7E+02 0.0037 21.0 4.9 21 181-201 33-53 (69)
157 COG4597 BatB ABC-type amino ac 27.6 5.5E+02 0.012 24.5 9.3 67 136-202 130-208 (397)
158 PF06897 DUF1269: Protein of u 27.6 1.1E+02 0.0024 23.7 4.1 31 164-197 4-35 (102)
159 PRK10734 putative calcium/sodi 27.4 4.8E+02 0.01 23.8 11.5 13 151-163 211-223 (325)
160 PF11157 DUF2937: Protein of u 27.4 2.7E+02 0.0058 23.3 6.7 60 140-200 98-163 (167)
161 PF07787 DUF1625: Protein of u 27.3 2.1E+02 0.0045 24.9 6.3 20 154-173 224-243 (248)
162 PLN02816 mannosyltransferase 27.1 6.3E+02 0.014 25.1 11.6 57 104-160 41-109 (546)
163 PF10337 DUF2422: Protein of u 27.0 2E+02 0.0044 27.2 6.6 13 97-109 12-24 (459)
164 cd02433 Nodulin-21_like_2 Nodu 27.0 4.4E+02 0.0094 23.2 9.6 27 177-203 208-234 (234)
165 PF09771 Tmemb_18A: Transmembr 26.9 1.4E+02 0.0031 24.3 4.8 50 93-147 22-71 (125)
166 TIGR00366 conserved hypothetic 26.8 5.9E+02 0.013 24.9 9.7 22 93-114 242-263 (438)
167 PF07178 TraL: TraL protein; 26.8 1.6E+02 0.0035 22.0 4.9 34 165-200 22-55 (95)
168 PF09726 Macoilin: Transmembra 26.1 7.3E+02 0.016 25.5 10.6 39 133-171 62-103 (697)
169 COG2864 FdnI Cytochrome b subu 26.0 2.6E+02 0.0056 24.9 6.6 40 138-178 154-193 (218)
170 PRK11339 abgT putative aminobe 26.0 3.5E+02 0.0075 26.9 8.1 21 152-172 304-324 (508)
171 PRK10334 mechanosensitive chan 25.9 4.9E+02 0.011 23.4 11.1 36 158-194 87-122 (286)
172 PRK11098 microcin B17 transpor 25.9 6E+02 0.013 24.4 10.8 30 174-203 238-269 (409)
173 PRK11909 cobalt transport prot 25.5 4.6E+02 0.01 23.0 10.2 21 165-185 68-88 (230)
174 COG5080 YIP1 Rab GTPase intera 25.4 1.2E+02 0.0025 27.2 4.3 23 137-159 89-111 (227)
175 PF02674 Colicin_V: Colicin V 25.2 3.2E+02 0.0069 21.0 11.9 27 165-191 94-120 (146)
176 COG1580 FliL Flagellar basal b 25.1 80 0.0017 26.4 3.1 14 110-123 27-40 (159)
177 PF15113 TMEM117: TMEM117 prot 25.1 1.8E+02 0.0038 28.1 5.6 53 100-152 62-114 (415)
178 PF07857 DUF1632: CEO family ( 25.1 2.2E+02 0.0048 25.5 6.1 62 135-201 29-102 (254)
179 COG2426 Predicted membrane pro 24.7 1.7E+02 0.0038 24.3 4.9 42 129-177 69-112 (142)
180 PLN02601 beta-carotene hydroxy 24.5 1.8E+02 0.004 27.0 5.5 8 40-47 47-54 (303)
181 PRK15432 autoinducer 2 ABC tra 24.5 5.5E+02 0.012 23.7 8.8 20 164-183 91-110 (344)
182 PF00654 Voltage_CLC: Voltage 24.5 1.5E+02 0.0033 26.9 5.1 41 142-182 244-294 (355)
183 PF03672 UPF0154: Uncharacteri 24.4 1.8E+02 0.0039 21.1 4.4 18 107-124 5-22 (64)
184 TIGR02185 Trep_Strep conserved 24.4 2.1E+02 0.0045 24.2 5.6 29 165-193 64-96 (189)
185 COG4232 Thiol:disulfide interc 24.0 5.5E+02 0.012 26.0 9.1 55 144-198 245-320 (569)
186 PF03904 DUF334: Domain of unk 23.8 3.1E+02 0.0068 24.6 6.7 10 181-190 182-191 (230)
187 PF03348 Serinc: Serine incorp 23.7 99 0.0021 29.6 3.9 19 94-112 354-372 (429)
188 PF13829 DUF4191: Domain of un 23.4 1.6E+02 0.0035 26.2 4.8 41 143-183 28-70 (224)
189 PF01544 CorA: CorA-like Mg2+ 23.4 1E+02 0.0023 26.0 3.6 23 154-176 237-259 (292)
190 PF01566 Nramp: Natural resist 23.1 4.8E+02 0.01 23.5 8.0 21 97-117 7-27 (358)
191 PF10166 DUF2368: Uncharacteri 23.0 2.4E+02 0.0053 22.9 5.5 26 159-184 75-100 (131)
192 PF06809 NPDC1: Neural prolife 22.7 56 0.0012 30.7 1.9 10 48-57 269-278 (341)
193 PF01944 DUF95: Integral membr 22.6 2.3E+02 0.005 22.4 5.3 33 167-199 61-93 (173)
194 TIGR00439 ftsX putative protei 22.5 5.8E+02 0.013 23.1 11.8 26 179-204 279-304 (309)
195 PRK13735 conjugal transfer mat 22.5 4.9E+02 0.011 27.9 8.8 20 159-178 346-365 (942)
196 PF11241 DUF3043: Protein of u 22.3 3E+02 0.0064 23.5 6.0 14 134-147 66-79 (170)
197 KOG0569 Permease of the major 22.3 1.6E+02 0.0034 28.8 5.0 9 95-103 263-271 (485)
198 COG1288 Predicted membrane pro 22.3 6.8E+02 0.015 24.9 9.1 17 94-110 268-284 (481)
199 PF14007 YtpI: YtpI-like prote 22.2 3.5E+02 0.0075 20.7 5.9 41 135-176 27-67 (89)
200 COG1575 MenA 1,4-dihydroxy-2-n 22.2 3.7E+02 0.008 25.0 7.1 20 165-184 148-169 (303)
201 COG3817 Predicted membrane pro 22.1 2.1E+02 0.0044 26.6 5.3 52 142-200 95-147 (313)
202 PRK09546 zntB zinc transporter 22.0 1.4E+02 0.0031 26.7 4.4 47 154-200 267-319 (324)
203 PF03253 UT: Urea transporter; 21.9 2.4E+02 0.0052 25.7 5.8 46 154-199 169-216 (301)
204 PRK05812 secD preprotein trans 21.9 1.7E+02 0.0037 28.7 5.1 10 177-186 455-464 (498)
205 PF10960 DUF2762: Protein of u 21.7 1.4E+02 0.003 21.9 3.5 23 134-156 4-27 (71)
206 PRK13747 putative mercury resi 21.6 3.5E+02 0.0075 20.4 5.6 38 165-202 34-71 (78)
207 TIGR00771 DcuC c4-dicarboxylat 21.6 6.7E+02 0.015 23.5 10.1 18 129-146 240-257 (388)
208 PRK10527 hypothetical protein; 21.6 1.2E+02 0.0026 24.4 3.4 25 151-175 14-39 (125)
209 PF07331 TctB: Tripartite tric 21.4 3.8E+02 0.0082 20.5 8.5 33 144-176 75-110 (141)
210 COG1280 RhtB Putative threonin 21.3 4.3E+02 0.0092 22.3 6.9 34 148-181 7-40 (208)
211 PF10031 DUF2273: Small integr 21.3 2.8E+02 0.0061 18.9 5.0 24 174-202 26-49 (51)
212 COG1916 Uncharacterized homolo 21.3 7.5E+02 0.016 23.9 9.4 44 131-174 275-329 (388)
213 PF09605 Trep_Strep: Hypotheti 21.2 4.7E+02 0.01 21.9 7.1 65 134-199 1-88 (186)
214 COG0598 CorA Mg2+ and Co2+ tra 21.2 1.2E+02 0.0027 27.3 3.8 50 153-202 264-319 (322)
215 PF15017 AF1Q: Drug resistance 21.1 1.9E+02 0.0042 22.1 4.3 9 40-48 28-36 (87)
216 PRK11085 magnesium/nickel/coba 21.1 1.5E+02 0.0032 27.3 4.3 49 153-201 258-312 (316)
217 PF11240 DUF3042: Protein of u 21.0 1.3E+02 0.0029 21.1 3.1 13 184-196 14-26 (54)
218 PF12301 CD99L2: CD99 antigen 21.0 1E+02 0.0023 26.1 3.1 20 179-198 118-137 (169)
219 PRK04897 heat shock protein Ht 20.8 3.7E+02 0.0081 24.1 6.8 23 179-201 41-63 (298)
220 PF13858 DUF4199: Protein of u 20.8 4.2E+02 0.0091 20.8 12.0 40 98-137 61-106 (163)
221 COG2891 MreD Cell shape-determ 20.7 2.8E+02 0.006 23.4 5.6 50 151-201 39-91 (167)
222 PRK10958 leucine export protei 20.6 4.2E+02 0.0091 22.3 6.7 21 161-181 24-44 (212)
223 PRK13822 conjugal transfer cou 20.6 6.6E+02 0.014 25.4 9.1 16 186-201 118-133 (641)
224 PRK11281 hypothetical protein; 20.5 6.8E+02 0.015 27.3 9.5 18 160-177 552-569 (1113)
225 COG0170 SEC59 Dolichol kinase 20.5 5.6E+02 0.012 22.1 10.2 26 139-164 87-113 (216)
226 PF04871 Uso1_p115_C: Uso1 / p 20.3 56 0.0012 26.5 1.3 15 64-78 106-120 (136)
227 PF05052 MerE: MerE protein; 20.3 3.8E+02 0.0083 20.1 5.7 37 165-201 34-70 (75)
228 PF07787 DUF1625: Protein of u 20.2 3.8E+02 0.0083 23.2 6.5 21 176-196 216-236 (248)
229 PRK12933 secD preprotein trans 20.2 3.2E+02 0.007 27.7 6.7 25 176-200 562-587 (604)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.5e-15 Score=131.31 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhhCChHHHH-HHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028702 127 QINAFLTQFSGFIEGYGPAGYAL-FVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS 205 (205)
Q Consensus 127 ~i~~~l~~L~~~i~~~G~~gpl~-filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~lgRs 205 (205)
......+.+++|++++|.+++++ |++.++..++.++|.+++++++|++||+++|++++++|+++||+++|+++|+++|+
T Consensus 30 ~~~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~gr~ 109 (223)
T COG0398 30 VLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLGRD 109 (223)
T ss_pred HhccCHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34456678899999999999999 77777777788899999999999999999999999999999999999999999985
No 2
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=98.43 E-value=1.7e-07 Score=84.03 Aligned_cols=74 Identities=30% Similarity=0.435 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 028702 132 LTQFSGFIEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFRS 205 (205)
Q Consensus 132 l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~lgRs 205 (205)
-..+.+|.+.+.....+.|++.|+..+.+.+| ..++++.+|++||+|.|++++++++++||++||+++++++|.
T Consensus 82 ~~vl~~y~~~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~ 156 (275)
T KOG3140|consen 82 GAVLRKYKATYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRP 156 (275)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHH
Confidence 34567778888888899999999999999999 899999999999999999999999999999999999999883
No 3
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=98.33 E-value=9e-07 Score=67.14 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=41.3
Q ss_pred CChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 162 IPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 162 iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
+|+.++.+++|++||++.|++++++|+++|+.++|+++|++++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~ 43 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGR 43 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6999999999999999999999999999999999999999984
No 4
>PRK10847 hypothetical protein; Provisional
Probab=98.08 E-value=1.6e-05 Score=68.22 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=53.5
Q ss_pred HHHHHHHhhCChHHHH-HHHHHHHH---HHhcCChHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 134 QFSGFIEGYGPAGYAL-FVAVYAGL---EILAIPAIPLTMSAGLLFG-------SVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 134 ~L~~~i~~~G~~gpl~-filiy~l~---~vl~iP~~~LtlaaG~LFG-------~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
.+.++++++|.|++.+ |++++.=. ...++|+..+.+++|++.+ ++..++++++|+++|+.++|++||++
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788899888653 33333322 1235898889999998865 45778899999999999999999998
Q ss_pred cc
Q 028702 203 FR 204 (205)
Q Consensus 203 gR 204 (205)
||
T Consensus 97 G~ 98 (219)
T PRK10847 97 GE 98 (219)
T ss_pred CH
Confidence 86
No 5
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=97.27 E-value=0.0011 Score=56.78 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=40.1
Q ss_pred hcCChHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 160 LAIPAIPLTMSAGLL-----FGSVTGTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 160 l~iP~~~LtlaaG~L-----FG~~~Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
.++|+.++.+++|++ +.++.-.+.+.+|+++|+.+.|++||++|+
T Consensus 34 ~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~ 83 (208)
T COG0586 34 PPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGR 83 (208)
T ss_pred CCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH
Confidence 468899999999987 567788889999999999999999999986
No 6
>COG1238 Predicted membrane protein [Function unknown]
Probab=95.84 E-value=0.042 Score=46.08 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 148 ALFVAVYAGLEILAIPAIPLTMSAGLL-FGSVTGTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 148 l~filiy~l~~vl~iP~~~LtlaaG~L-FG~~~Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
.+|+..++-++++++|..++-+.--.. +-++.=.+++.+|+++|++++|++||++.+
T Consensus 21 ~Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~ 78 (161)
T COG1238 21 GLFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPE 78 (161)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchH
Confidence 377778888888889954443332222 778888999999999999999999998764
No 7
>COG4852 Predicted membrane protein [Function unknown]
Probab=94.24 E-value=0.75 Score=37.40 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHhc--CCh-----HHHHHHHHhhhhhH--------------------------H
Q 028702 133 TQFSGFIEGYGPAGYALFVAVYAGLEILA--IPA-----IPLTMSAGLLFGSV--------------------------T 179 (205)
Q Consensus 133 ~~L~~~i~~~G~~gpl~filiy~l~~vl~--iP~-----~~LtlaaG~LFG~~--------------------------~ 179 (205)
..+-+.+.++.+.-.++|-++|++...++ .|+ .-.++.+|.+||.+ |
T Consensus 32 ~~iGdlm~Dfr~~PAiiFYlIYv~gltff~l~P~~~kgs~t~alL~GAl~G~~~YaTYDLTN~Atik~W~~~~Ti~Di~W 111 (134)
T COG4852 32 PYIGDLMGDFRLAPAIIFYLIYVVGLTFFVLSPGLEKGSWTYALLNGALYGLVCYATYDLTNLATIKDWPTTITIIDICW 111 (134)
T ss_pred HHHhhhhhhcccchHHHHHHHHHhhhheeEeccccccCccHHHHHhhhHhhhhheeeeccccchhhcCCceeeehHHHHH
Confidence 33444455666777788889999976543 673 56788899999753 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 180 GTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 180 Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
|++++ +++|+++|++-|++.|
T Consensus 112 Gt~vs----avaa~i~flV~~~~~~ 132 (134)
T COG4852 112 GTFVS----AVAAVIGFLVTRYFLR 132 (134)
T ss_pred HHHHH----HHHHHHHHhheeeecc
Confidence 55554 4556677999888765
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=92.00 E-value=3.1 Score=39.78 Aligned_cols=19 Identities=5% Similarity=-0.115 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhcccC
Q 028702 187 SGTVSGSKCCIFDCPIFRS 205 (205)
Q Consensus 187 GatlGA~laFlLgR~lgRs 205 (205)
....+=+.+|+.||.+||.
T Consensus 277 ~vw~~Di~AY~~G~~fGk~ 295 (403)
T PLN02953 277 GVIATDTFAFLGGKAFGRT 295 (403)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3444556778888888873
No 9
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=86.81 E-value=2.3 Score=34.35 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 028702 164 AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKC 195 (205)
Q Consensus 164 ~~~LtlaaG~LFG~~~Gtlls~iGatlGA~la 195 (205)
+....+.+|++||+..|.+...+|..++..+.
T Consensus 38 ~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 38 GSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 46788999999999999999988888887643
No 10
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=85.74 E-value=2.7 Score=35.24 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=25.4
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028702 164 AIPLTMSAGLLFGSVTGTIIVSISGTVSGSK 194 (205)
Q Consensus 164 ~~~LtlaaG~LFG~~~Gtlls~iGatlGA~l 194 (205)
..+.++.+|++||||+|.+...++..++..+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~ 64 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTL 64 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHh
Confidence 5788999999999999988887777666543
No 11
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=84.79 E-value=21 Score=31.07 Aligned_cols=55 Identities=18% Similarity=0.062 Sum_probs=34.2
Q ss_pred HHHHhhhhcHHHHH------HHHHHHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhh
Q 028702 116 GFGTMGYVYKDQIN------AFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFG 176 (205)
Q Consensus 116 ~~~l~~~l~~~~i~------~~l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG 176 (205)
.|.+.++...+..+ +..+.+.++++++|.+. +..+..+-.+|..+++.++|.---
T Consensus 99 ~Fll~R~~gr~~~~~~~~~~~~~~~~~~~~~~~g~~~------i~~lrl~P~~P~~lvn~aaglt~i 159 (223)
T COG0398 99 AFLLARYLGRDWVLKFVGGKEKVQRIDAGLERNGFWA------ILLLRLIPIFPFDLVNYAAGLTGI 159 (223)
T ss_pred HHHHHHHHhHHHHHHHhcccHHHHHHHHHHHhCChHH------HHHHHHhhcCCHHHHHHHHhccCC
Confidence 34566666666554 35567888888888332 222333345888888888885543
No 12
>PRK01844 hypothetical protein; Provisional
Probab=84.64 E-value=1 Score=33.45 Aligned_cols=28 Identities=4% Similarity=-0.078 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 177 SVTGTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 177 ~~~Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
.|...++.+++..+|++++|+++|+..+
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888999999999999998653
No 13
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=81.10 E-value=3.3 Score=32.94 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=10.4
Q ss_pred HHHHHHHhcCChHHHHH
Q 028702 153 VYAGLEILAIPAIPLTM 169 (205)
Q Consensus 153 iy~l~~vl~iP~~~Ltl 169 (205)
+.++..++++|+.--+.
T Consensus 79 llilG~L~fIPG~Y~~~ 95 (115)
T PF05915_consen 79 LLILGILCFIPGFYHTR 95 (115)
T ss_pred HHHHHHHHHhccHHHHH
Confidence 44556677799654444
No 14
>PRK09609 hypothetical protein; Provisional
Probab=80.36 E-value=4.3 Score=37.61 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028702 166 PLTMSAGLLFGSVTGTIIVSISGTVSGSK 194 (205)
Q Consensus 166 ~LtlaaG~LFG~~~Gtlls~iGatlGA~l 194 (205)
+.+..+|++|||++|.+...+...+|..+
T Consensus 45 IPviI~G~LFGPv~G~ivG~lsDLLs~li 73 (312)
T PRK09609 45 LPIKITGFIFGPIVGFFTGLLSDLISFLF 73 (312)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHh
Confidence 66889999999999988888777776543
No 15
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=79.84 E-value=10 Score=30.04 Aligned_cols=53 Identities=26% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHhcCC--hHHHHHHHHhhhhh--HHHHHHHHHHHHHHHH
Q 028702 134 QFSGFIEGYGPAGYALFVAVYAGLEILAIP--AIPLTMSAGLLFGS--VTGTIIVSISGTVSGS 193 (205)
Q Consensus 134 ~L~~~i~~~G~~gpl~filiy~l~~vl~iP--~~~LtlaaG~LFG~--~~Gtlls~iGatlGA~ 193 (205)
+-.++++++|.+|..+|+ ...+| +....-+.+.++|. ...++.+.+|..++++
T Consensus 64 ~~~~~i~kyg~~GL~lFV-------aIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 64 KKSKKIEKYGFWGLALFV-------AIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHHHhHHHHHHHH-------hCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 456677778876655543 33456 67777788888884 4556666666666654
No 16
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=79.13 E-value=9.4 Score=31.99 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=10.2
Q ss_pred CChHHHHHHHHhhhhh-HHHHHHHH
Q 028702 162 IPAIPLTMSAGLLFGS-VTGTIIVS 185 (205)
Q Consensus 162 iP~~~LtlaaG~LFG~-~~Gtlls~ 185 (205)
+|..+..++...+||. +.|.-|.+
T Consensus 94 vP~~~~~~~S~~~Fg~gllGisYGi 118 (153)
T PF11947_consen 94 VPPWAVLLVSLVFFGLGLLGISYGI 118 (153)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh
Confidence 4444444444444443 34444433
No 17
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=78.04 E-value=6.7 Score=30.96 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 028702 181 TIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 181 tlls~iGatlGA~laFlLgR~lgR 204 (205)
-.++.+++.+|..++|++.|++-|
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~ 119 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDR 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888888888755
No 18
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=77.95 E-value=41 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=17.8
Q ss_pred HhcCChHHH-HHHHHhhhhhHHHHHHH
Q 028702 159 ILAIPAIPL-TMSAGLLFGSVTGTIIV 184 (205)
Q Consensus 159 vl~iP~~~L-tlaaG~LFG~~~Gtlls 184 (205)
++.+|...+ .+.-|+.-|...|.++.
T Consensus 87 ~~Gip~i~~~l~~nGf~~Gf~v~~~v~ 113 (200)
T TIGR02831 87 IIGLPIILILDFLKGFVVGFTVGFLVN 113 (200)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456886655 77888888777666544
No 19
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=77.88 E-value=3 Score=33.40 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028702 164 AIPLTMSAGLLFGSVTGTIIVSISGTVSGSK 194 (205)
Q Consensus 164 ~~~LtlaaG~LFG~~~Gtlls~iGatlGA~l 194 (205)
..+..+.+|++|||++|.+...+...++..+
T Consensus 31 ~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 31 SFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999988888887776666655
No 20
>PRK00523 hypothetical protein; Provisional
Probab=77.79 E-value=2.5 Score=31.42 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 180 GTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 180 Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
..++.+++..+|++++|+++|+..+
T Consensus 7 ~I~l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999998654
No 21
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=76.90 E-value=26 Score=34.30 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=24.5
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 028702 164 AIPLTMSAGLLFGSVTGTIIVSISGTVS 191 (205)
Q Consensus 164 ~~~LtlaaG~LFG~~~Gtlls~iGatlG 191 (205)
+.+....+|++|||++|.+...++-.+|
T Consensus 98 gfIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 98 ELILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4677888999999999999998888887
No 22
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=76.11 E-value=30 Score=28.52 Aligned_cols=25 Identities=4% Similarity=-0.149 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 177 SVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 177 ~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
.+.|..+..+|..+.. +.+.+.|++
T Consensus 140 ~~~~i~~~glGlll~~-~~~~l~k~~ 164 (181)
T PF08006_consen 140 LFFGIGLFGLGLLLIV-ITFYLTKLF 164 (181)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3345555555544433 345555554
No 23
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=74.86 E-value=5.8 Score=33.96 Aligned_cols=14 Identities=7% Similarity=-0.138 Sum_probs=6.6
Q ss_pred CChHHHHHHHHHHH
Q 028702 143 GPAGYALFVAVYAG 156 (205)
Q Consensus 143 G~~gpl~filiy~l 156 (205)
+++|.++-++++.+
T Consensus 66 t~~G~~igi~~~gv 79 (173)
T PF11085_consen 66 TWLGNLIGIVFIGV 79 (173)
T ss_pred hhHHHHHHHHHHHH
Confidence 45555444444443
No 24
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=72.27 E-value=25 Score=25.91 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Q 028702 126 DQINAFLTQFSGFIEGYGPAGYALFVAVYAG 156 (205)
Q Consensus 126 ~~i~~~l~~L~~~i~~~G~~gpl~filiy~l 156 (205)
+.+.+.++++.++++. +++..+.++..++
T Consensus 36 ~~~~~~l~~i~~~l~g--p~~~~i~~i~ii~ 64 (99)
T PF04956_consen 36 DPWTSFLCKIIDWLTG--PIGKAIAIIAIIV 64 (99)
T ss_pred ccHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 6777788888888884 4445444443333
No 25
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=71.98 E-value=2.9 Score=30.38 Aligned_cols=22 Identities=5% Similarity=0.027 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 028702 183 IVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 183 ls~iGatlGA~laFlLgR~lgR 204 (205)
+.+++..+|++++|+++|+..+
T Consensus 2 ~iilali~G~~~Gff~ar~~~~ 23 (64)
T PF03672_consen 2 LIILALIVGAVIGFFIARKYME 23 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999998654
No 26
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=71.35 E-value=9.1 Score=31.55 Aligned_cols=25 Identities=8% Similarity=0.112 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 180 GTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 180 Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
+-.++.+++.+|..++|++.|++-|
T Consensus 102 ~e~~~~~~~~~g~~~g~~~~r~~~~ 126 (154)
T PRK10862 102 SDLAALCGALLGGVGGFLLARGLSR 126 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888999999997654
No 27
>PRK13661 hypothetical protein; Provisional
Probab=70.72 E-value=12 Score=31.90 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=11.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH
Q 028702 167 LTMSAGLLFGSVTGTIIVSISGTVS 191 (205)
Q Consensus 167 LtlaaG~LFG~~~Gtlls~iGatlG 191 (205)
+.+..|++||+..|.+...+|..++
T Consensus 43 ~i~l~a~lfGp~~G~lvg~ig~~L~ 67 (182)
T PRK13661 43 FLALFAVLFGPVVGFLVGFIGHALK 67 (182)
T ss_pred HHHHHHHHHChHHHHHHHHHHHHHH
Confidence 3444445555555544444444443
No 28
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=70.44 E-value=49 Score=27.72 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH--HhcCChHHHHHHHHh
Q 028702 127 QINAFLTQFSGFIEGYGPAGYALFVAVYAGLE--ILAIPAIPLTMSAGL 173 (205)
Q Consensus 127 ~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~--vl~iP~~~LtlaaG~ 173 (205)
++....|.+.+.+.=.-+.+-.+|+++..++. +.++|.-.+.++.|+
T Consensus 77 d~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gl 125 (156)
T PF08372_consen 77 DVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGL 125 (156)
T ss_pred HHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444443223444444444444433 346896666665554
No 29
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=69.62 E-value=35 Score=28.01 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=38.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHH-------------HHHHHHH
Q 028702 121 GYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTG-------------TIIVSIS 187 (205)
Q Consensus 121 ~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~~G-------------tlls~iG 187 (205)
+-.+.++..+.++++.+--..+++|..++..++......+.+=+.+..+...++-|.+.+ .+...++
T Consensus 80 ~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~a 159 (193)
T PF06738_consen 80 GQLSLEEAIERLDEIDREPPRYPPWLVILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIA 159 (193)
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455666666666665433334454544333333333222223332333332222222222 3444577
Q ss_pred HHHHHHHHHHHhhh
Q 028702 188 GTVSGSKCCIFDCP 201 (205)
Q Consensus 188 atlGA~laFlLgR~ 201 (205)
+.+++.+++++.+.
T Consensus 160 a~~~~~~a~~~~~~ 173 (193)
T PF06738_consen 160 AFLASLLAALLARL 173 (193)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777654
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=68.67 E-value=11 Score=39.49 Aligned_cols=11 Identities=36% Similarity=0.607 Sum_probs=5.3
Q ss_pred hhhHHHHHHHH
Q 028702 175 FGSVTGTIIVS 185 (205)
Q Consensus 175 FG~~~Gtlls~ 185 (205)
||...|+++.+
T Consensus 157 ~Gf~iG~~~~l 167 (953)
T TIGR00930 157 FGGSIGLIFAF 167 (953)
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 31
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=67.68 E-value=8.9 Score=32.14 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=36.8
Q ss_pred CCh-HHHHHHHHHHHHH------HhcCC-hHHHHHHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHhhhc
Q 028702 143 GPA-GYALFVAVYAGLE------ILAIP-AIPLTMSAGLLFGSVTGTIIVSISGT-----VSGSKCCIFDCPI 202 (205)
Q Consensus 143 G~~-gpl~filiy~l~~------vl~iP-~~~LtlaaG~LFG~~~Gtlls~iGat-----lGA~laFlLgR~l 202 (205)
||| +...-++.-++.. .+.+| +.+=++.+|++|=...=...+++|.. +|+.++|-+++++
T Consensus 43 GP~ya~~~Af~~sliR~~lg~Gt~lAfPGsm~GA~laGllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~ 115 (150)
T PF09512_consen 43 GPWYAVAMAFITSLIRNLLGTGTLLAFPGSMFGALLAGLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLF 115 (150)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHhccchHHHHHHHHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 443 5555455544443 34577 56667777887766655555655544 5677788877775
No 32
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=66.51 E-value=1.9 Score=33.87 Aligned_cols=15 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred ccccCCcCChhhHHH
Q 028702 89 AESEGLEGDTAVKGS 103 (205)
Q Consensus 89 ~~~~~~~~~~a~r~~ 103 (205)
+||++++.+.-.|..
T Consensus 31 Dddddee~de~p~p~ 45 (101)
T PF09026_consen 31 DDDDDEEEDEVPVPE 45 (101)
T ss_dssp ---------------
T ss_pred ccccccccccccchh
Confidence 333356666555544
No 33
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=64.81 E-value=11 Score=33.74 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhhhcHH
Q 028702 107 GVLLLVVVGGFGTMGYVYKD 126 (205)
Q Consensus 107 ~vlll~llg~~~l~~~l~~~ 126 (205)
++++..+.|.+....+.+..
T Consensus 184 G~~LAv~aGvlyGs~fvPv~ 203 (254)
T PF07857_consen 184 GIILAVFAGVLYGSNFVPVI 203 (254)
T ss_pred hHHHHHHHHHHHhcccchHH
Confidence 44444555544333344333
No 34
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=63.92 E-value=46 Score=30.16 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=24.3
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028702 164 AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDC 200 (205)
Q Consensus 164 ~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR 200 (205)
.+...+.+|++||.-.=+ +.+....+|...+|-++.
T Consensus 194 ~~~~nil~G~~w~ignl~-~~is~~~~G~a~af~lSQ 229 (269)
T PF06800_consen 194 KSWKNILTGLIWGIGNLF-YLISAQKNGVATAFTLSQ 229 (269)
T ss_pred chHHhhHHHHHHHHHHHH-HHHhHHhccchhhhhHHh
Confidence 688999999999864322 333344677777776654
No 35
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=62.76 E-value=19 Score=31.75 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHh------cCChHHHHHHHHhhhhh
Q 028702 147 YALFVAVYAGLEIL------AIPAIPLTMSAGLLFGS 177 (205)
Q Consensus 147 pl~filiy~l~~vl------~iP~~~LtlaaG~LFG~ 177 (205)
.++.+++|+..+++ .+|.+++++.|+++++.
T Consensus 172 m~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lal 208 (226)
T COG4858 172 MLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILAL 208 (226)
T ss_pred HHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHH
Confidence 44555555444433 25668888888877763
No 36
>PRK10263 DNA translocase FtsK; Provisional
Probab=61.62 E-value=51 Score=36.27 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhc
Q 028702 187 SGTVSGSKCCIFDCPI 202 (205)
Q Consensus 187 GatlGA~laFlLgR~l 202 (205)
|..+|..++.++..++
T Consensus 143 GGIIG~lLs~lL~~Lf 158 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLL 158 (1355)
T ss_pred cchHHHHHHHHHHHHH
Confidence 4444444444444443
No 37
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=61.11 E-value=60 Score=30.43 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=5.9
Q ss_pred cCChHHHHHHHHhh
Q 028702 161 AIPAIPLTMSAGLL 174 (205)
Q Consensus 161 ~iP~~~LtlaaG~L 174 (205)
.+|....++++|++
T Consensus 93 ~lp~~~~~~~~~i~ 106 (359)
T PRK05702 93 LLPILLLLVLAALL 106 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 34544444444433
No 38
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.69 E-value=12 Score=30.16 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=15.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 171 AGLLFGSVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 171 aG~LFG~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
+|++||...|.+..+ ..+.|++.|.-
T Consensus 67 ~~Ii~gv~aGvIg~I------lli~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII------LLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHH------HHHHHHHHHHh
Confidence 556666666654422 37788887764
No 39
>COG2261 Predicted membrane protein [Function unknown]
Probab=60.35 E-value=22 Score=27.00 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHHhhhcc
Q 028702 166 PLTMSAGLLFGSV-----TGTIIVSISGTVSGSKCCIFDCPIF 203 (205)
Q Consensus 166 ~LtlaaG~LFG~~-----~Gtlls~iGatlGA~laFlLgR~lg 203 (205)
+=++++|++|+.+ .+...+.+.+++||++.-++.|.+.
T Consensus 38 VGA~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 38 VGAFVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677787777 5678889999999999998888654
No 40
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=58.95 E-value=24 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=24.0
Q ss_pred HHHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHhhhccc
Q 028702 168 TMSAGLLFGSVTG----TIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 168 tlaaG~LFG~~~G----tlls~iGatlGA~laFlLgR~lgR 204 (205)
++++|++++.+-. ..-.++.+++||++.-++.|.+-|
T Consensus 8 a~vGg~l~~~lg~~~~~~~~~~i~aviGAiill~i~~~i~r 48 (48)
T PF04226_consen 8 AFVGGWLFGLLGINGGGSWGSFIVAVIGAIILLFIYRLIRR 48 (48)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555554322 566678888999888887776543
No 41
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.19 E-value=69 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=17.4
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHh
Q 028702 136 SGFIEGYGPAGYALFVAVYAGLEIL 160 (205)
Q Consensus 136 ~~~i~~~G~~gpl~filiy~l~~vl 160 (205)
.+.+..-.||+.++|.++=..+.++
T Consensus 66 lD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 66 LDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3455667899998888776665554
No 42
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.85 E-value=12 Score=27.73 Aligned_cols=26 Identities=0% Similarity=-0.114 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028702 178 VTGTIIVSISGTVSGSKCCIFDCPIF 203 (205)
Q Consensus 178 ~~Gtlls~iGatlGA~laFlLgR~lg 203 (205)
|.+.++..++-.+|..++|+++|...
T Consensus 4 ~lail~ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777788899998653
No 43
>PF01944 DUF95: Integral membrane protein DUF95; InterPro: IPR002798 Many members of this family have no known function and are predicted to be integral membrane proteins. Q9V182 from SWISSPROT is annotated as "Stage II sporulation protein M related"; and weakly related to other proteins with similar annotation.
Probab=56.78 E-value=99 Score=24.56 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhHHHH
Q 028702 151 VAVYAGLEILAIPAIPLTMSAGLLFGSVTGT 181 (205)
Q Consensus 151 iliy~l~~vl~iP~~~LtlaaG~LFG~~~Gt 181 (205)
+..++....+.+|.....+..|++.|...+.
T Consensus 60 ~~~~~~g~~~gi~~~~~l~~nG~~lG~~~~~ 90 (173)
T PF01944_consen 60 LLMFLLGITFGIPSIFILFFNGFILGFVIGF 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445577666668899998888774
No 44
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=56.64 E-value=16 Score=27.26 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=18.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHH
Q 028702 172 GLLFGSVTGTIIVSISGTVSGSK 194 (205)
Q Consensus 172 G~LFG~~~Gtlls~iGatlGA~l 194 (205)
|.+||.+.|.+++++=-.+++.+
T Consensus 51 GILYGlVIGlil~~i~~~l~~~~ 73 (75)
T COG4064 51 GILYGLVIGLILCMIYILLGVAF 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988877777653
No 45
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=56.11 E-value=16 Score=36.06 Aligned_cols=45 Identities=29% Similarity=0.376 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHH------HHHHHHHHHHHHHHHH
Q 028702 146 GYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTI------IVSISGTVSGSKCCIF 198 (205)
Q Consensus 146 gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtl------ls~iGatlGA~laFlL 198 (205)
.|+.=-++.++..++.+| |++||.+.|++ ....+..+++...|+.
T Consensus 305 sPf~~siV~~i~~~Flip--------GlvYG~vtgtik~~kDvv~~M~~~m~sMg~yiV 355 (516)
T COG2978 305 SPFMKSIVPFIFLLFLIP--------GLVYGRVTGTIKNDKDVVNMMAESMSSMGGYIV 355 (516)
T ss_pred ChHHHhHHHHHHHHHHHh--------hhhhheeeeeeeccHHHHHHHHHHHHHhhhHHH
Confidence 343333444444445555 67788888764 5667777776665543
No 46
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=55.80 E-value=83 Score=29.50 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=4.7
Q ss_pred cCChHHHHHHHH
Q 028702 161 AIPAIPLTMSAG 172 (205)
Q Consensus 161 ~iP~~~LtlaaG 172 (205)
.+|....++++|
T Consensus 95 ~~p~~~~~~~~~ 106 (358)
T PRK13109 95 LLPILLILAVCG 106 (358)
T ss_pred HHHHHHHHHHHH
Confidence 344333333333
No 47
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=55.51 E-value=30 Score=29.04 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=22.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 171 AGLLFGSVTGTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 171 aG~LFG~~~Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
+.++|. .=.++.+++.+|..++|++.|.+-|
T Consensus 96 a~~L~~---~e~~~~~~~~lg~~l~fl~~r~ysR 126 (150)
T COG3086 96 AQYLFF---SELIVIFGAFLGLALGFLLARRYSR 126 (150)
T ss_pred HHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 3466788899999999999887754
No 48
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=55.10 E-value=38 Score=25.89 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=25.0
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Q 028702 95 EGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAG 156 (205)
Q Consensus 95 ~~~~a~r~~iLa~vlll~llg~~~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l 156 (205)
+.+..-...++.++.+++++= .+..|+...++ -.+.+.|.|-.++-+++.++
T Consensus 27 ~~sp~W~~p~m~~lmllGL~W--iVvyYi~~~~i--------~pi~~lG~WN~~IGfg~~~~ 78 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLW--IVVYYISGGQI--------PPIPDLGNWNLAIGFGLMIV 78 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHH--HhhhhcccCCC--------CCcccccchHHHHHHHHHHH
Confidence 444444444445444444442 23345544431 24566677766555544444
No 49
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=55.00 E-value=50 Score=32.88 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHH------------------HHHHHHHHHHHHHhhhccc
Q 028702 165 IPLTMSAGLLFGSVTGTIIVS------------------ISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~------------------iGatlGA~laFlLgR~lgR 204 (205)
.+=.++||+++|||.|.++.+ +++.++..++=++.||+-|
T Consensus 71 ~igv~~gGllgGP~Vg~~vGl~~GlhR~~mGg~ta~~c~iSti~~G~l~g~~~~~~~r 128 (557)
T COG3275 71 AIGVVMGGLLGGPVVGIIVGLTAGLHRYSMGGMTALSCAISTILEGLLGGLVHLYLIR 128 (557)
T ss_pred HHHHHhcccccCChhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566788999999999987654 4455555666666666543
No 50
>PRK15049 L-asparagine permease; Provisional
Probab=54.77 E-value=40 Score=32.15 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=15.1
Q ss_pred CCCCCchhh-hhcCCCCCccccCCcCChhhHHHH
Q 028702 72 KGDDDDNNN-RIQGNGMDAESEGLEGDTAVKGSI 104 (205)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~r~~i 104 (205)
|.|.|..|| .+++..+++.|++.++.-..|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~r~L~~~~~~ 36 (499)
T PRK15049 3 KHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQ 36 (499)
T ss_pred cccCCcccccchhcccccCCchhhhccCCHhHhH
Confidence 444455554 333444444444455544444443
No 51
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=54.69 E-value=93 Score=23.65 Aligned_cols=27 Identities=7% Similarity=-0.194 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 176 GSVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 176 G~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
++|++++++.....+.+.++++.++.-
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888777777777777766653
No 52
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=54.69 E-value=59 Score=26.59 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=42.0
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHhcCChHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028702 137 GFIEGYGPAGYALFVAVYAGLEILAIPAIP-LTMSAGLLFGSVTGTIIVSISGTVSGSK 194 (205)
Q Consensus 137 ~~i~~~G~~gpl~filiy~l~~vl~iP~~~-LtlaaG~LFG~~~Gtlls~iGatlGA~l 194 (205)
++++++++...--|.-.+++..+++=|... ++..-|+.-+-+.|.+++.+|..+=+.+
T Consensus 30 ~~V~~~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l 88 (169)
T PF02417_consen 30 EFVERRGWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFL 88 (169)
T ss_pred HHhHccCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777888888887777777555 7777787777788888888876665544
No 53
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=54.66 E-value=17 Score=26.40 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.6
Q ss_pred CChHHHHHHHHhhhhhHHHHHHHHH
Q 028702 162 IPAIPLTMSAGLLFGSVTGTIIVSI 186 (205)
Q Consensus 162 iP~~~LtlaaG~LFG~~~Gtlls~i 186 (205)
-|...+.++.|+++|.+.|+.++++
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999887764
No 54
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=54.43 E-value=2e+02 Score=27.31 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=11.8
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHhcCC
Q 028702 135 FSGFIEGYGPAGYALFVAVYAGLEILAIP 163 (205)
Q Consensus 135 L~~~i~~~G~~gpl~filiy~l~~vl~iP 163 (205)
+...+++.|. |-.|+++-+ ..+...|
T Consensus 245 Ie~~v~~~Gl--p~afiGvII-aiv~~ap 270 (366)
T PRK10599 245 LETLLTSMNA--PVAFTGFLV-ALLILSP 270 (366)
T ss_pred HHHHHHhcCC--CHHHHHHHH-HHHHcch
Confidence 3444565553 334444333 3344456
No 55
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=53.89 E-value=1.7e+02 Score=26.28 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=10.8
Q ss_pred HHHHHhhCChHHHHHHHHHHH
Q 028702 136 SGFIEGYGPAGYALFVAVYAG 156 (205)
Q Consensus 136 ~~~i~~~G~~gpl~filiy~l 156 (205)
..|+.++++++.++-+++-+.
T Consensus 215 ~~~~g~~~~~~ill~~~~g~~ 235 (307)
T PF03773_consen 215 STLLGSNGLLAILLAMLLGVP 235 (307)
T ss_pred HHHhhcCchHHHHHHHHHHHH
Confidence 344555666665544444333
No 56
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.58 E-value=93 Score=29.55 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=7.7
Q ss_pred cCChHHHHHHHHhh
Q 028702 161 AIPAIPLTMSAGLL 174 (205)
Q Consensus 161 ~iP~~~LtlaaG~L 174 (205)
.+|..++.+++|++
T Consensus 93 llp~~~~~~v~gi~ 106 (363)
T COG1377 93 LLPFLLVLLVVGLL 106 (363)
T ss_pred HHHHHHHHHHHHHH
Confidence 46655555555544
No 57
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=51.85 E-value=53 Score=28.21 Aligned_cols=13 Identities=8% Similarity=-0.031 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 028702 146 GYALFVAVYAGLE 158 (205)
Q Consensus 146 gpl~filiy~l~~ 158 (205)
+.+.+.++.+++.
T Consensus 73 gi~~~gv~Si~aA 85 (173)
T PF11085_consen 73 GIVFIGVFSIVAA 85 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 58
>PF05072 Herpes_UL43: Herpesvirus UL43 protein; InterPro: IPR007764 UL43 genes are expressed with true-late (gamma2) kinetics and have been identified as a virion tegument component []. Studies suggest that the N-terminal sequences target UL43 to protein aggregates and that C-terminal sequences are important for incorporation into particles.; GO: 0016020 membrane, 0019033 viral tegument
Probab=51.65 E-value=1.3e+02 Score=28.65 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028702 173 LLFGSVTGTIIVSISGTVSGSKCCIFDC 200 (205)
Q Consensus 173 ~LFG~~~Gtlls~iGatlGA~laFlLgR 200 (205)
..||...|.-+.+.+++-++..+-+--|
T Consensus 317 ~~~g~~~g~~~~La~av~~~l~~~l~lr 344 (373)
T PF05072_consen 317 ALFGYEIGAPLFLASAVWISLACVLGLR 344 (373)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888877777666665555544433
No 59
>COG4732 Predicted membrane protein [Function unknown]
Probab=51.49 E-value=20 Score=30.52 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHH
Q 028702 164 AIPLTMSAGLLFGSVTGTIIVSI 186 (205)
Q Consensus 164 ~~~LtlaaG~LFG~~~Gtlls~i 186 (205)
..+..+++|.+-|||++...+.+
T Consensus 40 qh~VNvlAgV~~GPwyala~A~~ 62 (177)
T COG4732 40 QHFVNVLAGVMMGPWYALAMALV 62 (177)
T ss_pred HHHHHHHHHhhcchHHHHHHHHH
Confidence 36789999999999998777654
No 60
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=51.25 E-value=67 Score=27.57 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=8.4
Q ss_pred cccCCCCCCCchh
Q 028702 67 WFFNPKGDDDDNN 79 (205)
Q Consensus 67 ~~~~~~~~~~~~~ 79 (205)
.|..|+.|.+.++
T Consensus 65 ~FltP~~Dp~l~~ 77 (176)
T PF03248_consen 65 AFLTPKFDPELEQ 77 (176)
T ss_pred HHhCCcCcccccc
Confidence 4678888765443
No 61
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=50.92 E-value=14 Score=36.78 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=7.0
Q ss_pred ccccCCCCCC
Q 028702 66 GWFFNPKGDD 75 (205)
Q Consensus 66 ~~~~~~~~~~ 75 (205)
..+|.|+++|
T Consensus 512 sy~f~pqn~D 521 (667)
T KOG2348|consen 512 SYFFPPQNYD 521 (667)
T ss_pred eEecCCccCc
Confidence 4566788877
No 62
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=49.40 E-value=1e+02 Score=29.31 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=6.1
Q ss_pred cCChHHHHHHHHhh
Q 028702 161 AIPAIPLTMSAGLL 174 (205)
Q Consensus 161 ~iP~~~LtlaaG~L 174 (205)
.+|....++++|++
T Consensus 93 ~~P~~~~~~~~~i~ 106 (386)
T PRK12468 93 MLPIFAGLVIVALA 106 (386)
T ss_pred HHHHHHHHHHHHHH
Confidence 35544444444433
No 63
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=49.17 E-value=1.4e+02 Score=24.18 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHHHh-hCChHHHHHHHHHHHHHHhc--CCh-----HHHHHHHHhhhhhH
Q 028702 133 TQFSGFIEG-YGPAGYALFVAVYAGLEILA--IPA-----IPLTMSAGLLFGSV 178 (205)
Q Consensus 133 ~~L~~~i~~-~G~~gpl~filiy~l~~vl~--iP~-----~~LtlaaG~LFG~~ 178 (205)
+++.+..++ ..++..++|=++|+...+.+ .|+ ..-++..|.+||..
T Consensus 33 ~~ig~ll~~~~~~~pA~~fYl~yv~gi~~F~~~P~l~~~s~~~a~~~GallGl~ 86 (128)
T PF09945_consen 33 PHIGDLLADQPNLWPAIVFYLIYVAGIVYFAVRPALAAGSWLRALLYGALLGLF 86 (128)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHheeeeccccccCCHHHHHHHHHHHHHH
Confidence 344444454 34555567777887776543 473 34566777777653
No 64
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=49.01 E-value=1.1e+02 Score=30.39 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 028702 153 VYAGLEILAIPAIPLTMSAGL 173 (205)
Q Consensus 153 iy~l~~vl~iP~~~LtlaaG~ 173 (205)
+..+..++.+|+++..+++|.
T Consensus 307 ipii~~~Fli~givyG~~~g~ 327 (513)
T TIGR00819 307 VPFIFLFFALPGIAYGIATRS 327 (513)
T ss_pred HHHHHHHHHHHHHHHHhhcCc
Confidence 333344455666655555553
No 65
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=49.00 E-value=1.1e+02 Score=29.67 Aligned_cols=12 Identities=17% Similarity=0.061 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 028702 147 YALFVAVYAGLE 158 (205)
Q Consensus 147 pl~filiy~l~~ 158 (205)
-.+|.+.|++..
T Consensus 87 ~t~F~v~Yii~~ 98 (495)
T KOG2533|consen 87 DTVFYVGYIIGQ 98 (495)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 66
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=48.05 E-value=2.5e+02 Score=26.69 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhCChHHH
Q 028702 103 SILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYA 148 (205)
Q Consensus 103 ~iLa~vlll~llg~~~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl 148 (205)
.++..++.+++++.++++.+.. .......+.+..|+-=+|.++.+
T Consensus 240 k~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~~W~l~ng~laal 284 (380)
T TIGR00261 240 KVLSYLIAISIILLFVMISFYL-NGFEFLYKNLKLWILSNGILSAI 284 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444444444444233222 12223556677788777765543
No 67
>PRK10249 phenylalanine transporter; Provisional
Probab=46.28 E-value=1.2e+02 Score=28.38 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=7.0
Q ss_pred HhhhhhHHHHHHHH
Q 028702 172 GLLFGSVTGTIIVS 185 (205)
Q Consensus 172 G~LFG~~~Gtlls~ 185 (205)
.-.||+..|++..|
T Consensus 92 ~~~~g~~~gf~~gw 105 (458)
T PRK10249 92 YKYWGPFAGFLSGW 105 (458)
T ss_pred HHHhChHHHHHHHH
Confidence 34455555554443
No 68
>TIGR00378 cax calcium/proton exchanger (cax).
Probab=46.27 E-value=2.4e+02 Score=25.94 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcCCh
Q 028702 148 ALFVAVYAGLEILAIPA 164 (205)
Q Consensus 148 l~filiy~l~~vl~iP~ 164 (205)
-.|+.+-++......|=
T Consensus 239 ~~~igl~iva~~tslpE 255 (349)
T TIGR00378 239 KLFIGVIVIPIVGNAAE 255 (349)
T ss_pred HHHHHHHHHHHhcccHH
Confidence 34555555555556673
No 69
>PRK05415 hypothetical protein; Provisional
Probab=45.98 E-value=82 Score=29.59 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=5.4
Q ss_pred HHHHhhCChHH
Q 028702 137 GFIEGYGPAGY 147 (205)
Q Consensus 137 ~~i~~~G~~gp 147 (205)
+-++++.+++.
T Consensus 91 ~~~~~~~wlg~ 101 (341)
T PRK05415 91 DAFQRSDWLGL 101 (341)
T ss_pred HHHHhCcHHHH
Confidence 34455555554
No 70
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=45.94 E-value=35 Score=25.73 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=17.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHH
Q 028702 171 AGLLFGSVTGTIIVSISGTVSGS 193 (205)
Q Consensus 171 aG~LFG~~~Gtlls~iGatlGA~ 193 (205)
-|.+||.+.|+++.++-..+...
T Consensus 50 iGIlYG~viGlli~~i~~~~~~~ 72 (77)
T PRK01026 50 IGILYGLVIGLLIVLVYIILSPI 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888887776665544
No 71
>PRK09928 choline transport protein BetT; Provisional
Probab=44.73 E-value=61 Score=33.16 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=30.3
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 028702 119 TMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEI 159 (205)
Q Consensus 119 l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~v 159 (205)
++..+.++...+..+.+.+|+.++--|.+++.+.++++..+
T Consensus 32 ~~~~~~p~~a~~~~~~~~~~i~~~fgW~y~l~~~~~l~f~~ 72 (679)
T PRK09928 32 LTTILFTDFSNRWINRTLNWVSKTFGWYYLLAATLYIVFVI 72 (679)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33456688888899999999987777777776766666543
No 72
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=44.52 E-value=2.1e+02 Score=24.81 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHH
Q 028702 132 LTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISG-TVSGSKCCIF 198 (205)
Q Consensus 132 l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGa-tlGA~laFlL 198 (205)
.+.+..-++ -|-|.|+..-+=-..+... -+.++..+|+...|+.+.++|. .+-+.++.++
T Consensus 115 ~~~~~~g~e-TgnW~Pl~~~~Es~~~~~~------As~v~a~~fs~~~~t~igi~g~ail~a~v~s~I 175 (187)
T PF01024_consen 115 REKFKKGIE-TGNWRPLFLELESLAAGGA------ASAVAAFAFSFILGTPIGILGIAILMAVVGSLI 175 (187)
T ss_dssp HHHHHHHHH-HS--HHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCcHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 344444444 4778886543332222211 2445556688888888888887 5666666665
No 73
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=43.58 E-value=1.3e+02 Score=26.11 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=19.4
Q ss_pred HHhcCChHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 158 EILAIPAIPLTMSAGLLF-GSVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 158 ~vl~iP~~~LtlaaG~LF-G~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
..+.+=+..+..++..++ +++...+.+ .++-.++.++.|+.
T Consensus 74 ~~F~l~G~~lq~~~~~~~~~~lp~~l~~----~~al~~sl~~~~~~ 115 (202)
T PF07290_consen 74 SSFGLIGYLLQYVAISLFGGPLPAWLAA----PVALFLSLFFTRYL 115 (202)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHH----HHHHHHHHHHHHHH
Confidence 444555566666655554 344444433 33333444444443
No 74
>PRK01844 hypothetical protein; Provisional
Probab=43.04 E-value=1.1e+02 Score=22.80 Aligned_cols=10 Identities=10% Similarity=0.458 Sum_probs=4.9
Q ss_pred HHHHHHhhCC
Q 028702 135 FSGFIEGYGP 144 (205)
Q Consensus 135 L~~~i~~~G~ 144 (205)
+..+++++++
T Consensus 29 ~~k~lk~NPp 38 (72)
T PRK01844 29 MMNYLQKNPP 38 (72)
T ss_pred HHHHHHHCCC
Confidence 3445555544
No 75
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=42.67 E-value=43 Score=29.70 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 028702 103 SILAGVLLLVVVGGF 117 (205)
Q Consensus 103 ~iLa~vlll~llg~~ 117 (205)
.++.+++++++++.+
T Consensus 204 ~wl~i~~~l~~~~Y~ 218 (268)
T PF09451_consen 204 TWLFIILFLFLAAYL 218 (268)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555554444
No 76
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=42.66 E-value=1.3e+02 Score=27.36 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHH-HHHHHhcCChHHHHHHHHhhhhhHHHH
Q 028702 125 KDQINAFLTQFSGFIEGYGPAGYALFVAVY-AGLEILAIPAIPLTMSAGLLFGSVTGT 181 (205)
Q Consensus 125 ~~~i~~~l~~L~~~i~~~G~~gpl~filiy-~l~~vl~iP~~~LtlaaG~LFG~~~Gt 181 (205)
..+...+.+.+..++-+ +.+.+-|++.- +...++.+=+..++.++|++=|++.|.
T Consensus 47 ~~~~~~wid~Lm~~iPd--Wl~wLs~v~~~la~L~lll~~~~lfs~v~~~IAapFng~ 102 (250)
T COG2981 47 FSQALPWIDTLMPGIPD--WLGWLSYLLWILAVLLLLLVFAFLFSTVANLIAAPFNGL 102 (250)
T ss_pred HHHHHHHHHHHhhcCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34444555555544443 23333332221 122223333455566666665555554
No 77
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=42.40 E-value=2.3e+02 Score=25.26 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHhhh
Q 028702 137 GFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKC-CIFDCP 201 (205)
Q Consensus 137 ~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~la-FlLgR~ 201 (205)
.+.++..++.+.+.++.+++. +.+.++-|++||.|+ ....+|..+|..++ ++++|.
T Consensus 18 ~~trk~dp~l~~~ml~a~l~~-------~~v~v~ig~l~~~~~--~~~i~gi~~g~l~am~vl~rr 74 (224)
T PF13829_consen 18 KMTRKEDPKLPWLMLGAFLGP-------IAVFVLIGLLFGSWW--YWLIIGILLGLLAAMIVLSRR 74 (224)
T ss_pred HHHHHHCcchHHHHHHHHHHH-------HHHHHHHHHHHccHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555444444443332 223445566666432 22334444554444 344554
No 78
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=42.23 E-value=82 Score=29.37 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=49.7
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHHhh
Q 028702 137 GFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKC-CIFDC 200 (205)
Q Consensus 137 ~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~la-FlLgR 200 (205)
+.++++++...--|.-.+++++.++=|...++..-|+..|-+.|.+++.+|..+=+.+. +.++.
T Consensus 231 ~~V~~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~ 295 (368)
T TIGR00937 231 GVVDRGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLP 295 (368)
T ss_pred HHHhccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888889999999998887855588888888999999999999988866444 33443
No 79
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=42.20 E-value=1.2e+02 Score=28.71 Aligned_cols=6 Identities=0% Similarity=0.042 Sum_probs=2.4
Q ss_pred CCCchh
Q 028702 74 DDDDNN 79 (205)
Q Consensus 74 ~~~~~~ 79 (205)
++.+++
T Consensus 39 ~~~~~~ 44 (403)
T PTZ00127 39 KLAEES 44 (403)
T ss_pred chhhHH
Confidence 333333
No 80
>PRK10845 colicin V production protein; Provisional
Probab=42.02 E-value=2e+02 Score=23.70 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHH
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISG 188 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGa 188 (205)
..+.=..|.+||...|.+++.+.-
T Consensus 94 g~~dr~lG~ifG~~rg~liv~v~l 117 (162)
T PRK10845 94 SGTDRVLGVCFGALRGVLIVAAIL 117 (162)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788999999988876554
No 81
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=41.83 E-value=2e+02 Score=26.09 Aligned_cols=52 Identities=21% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhh-----hhhHHHHHHHH
Q 028702 134 QFSGFIEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLL-----FGSVTGTIIVS 185 (205)
Q Consensus 134 ~L~~~i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~L-----FG~~~Gtlls~ 185 (205)
.+..|+...-..+....++.++...++.+| +..+++.+|++ +|+..|.+...
T Consensus 192 ~~~~Y~~g~~i~~~i~gv~~~i~l~ilgv~~alllgil~glln~IPyiG~~i~~ip~~ 249 (344)
T PRK12287 192 SVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPI 249 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 466666655555556666777777778899 78888888864 56666654443
No 82
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=41.74 E-value=1.4e+02 Score=29.39 Aligned_cols=11 Identities=9% Similarity=-0.275 Sum_probs=5.7
Q ss_pred cCChhhHHHHH
Q 028702 95 EGDTAVKGSIL 105 (205)
Q Consensus 95 ~~~~a~r~~iL 105 (205)
+...+||-.++
T Consensus 38 rVy~rRW~vLl 48 (480)
T KOG2563|consen 38 RVYPRRWVVLL 48 (480)
T ss_pred ccchhHhHHHH
Confidence 55555654433
No 83
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=41.72 E-value=74 Score=27.28 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=12.1
Q ss_pred HHHHHHhhhhhHHHHHH
Q 028702 167 LTMSAGLLFGSVTGTII 183 (205)
Q Consensus 167 LtlaaG~LFG~~~Gtll 183 (205)
.+.+.|++.||+.|..+
T Consensus 86 a~g~lG~L~GP~~G~~v 102 (173)
T PF08566_consen 86 ACGALGWLVGPSLGNQV 102 (173)
T ss_pred HHHHHHHHhcchHHHHH
Confidence 45567888888887654
No 84
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.71 E-value=84 Score=25.77 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=8.6
Q ss_pred HhhhhhHHHHHHHHHHHH
Q 028702 172 GLLFGSVTGTIIVSISGT 189 (205)
Q Consensus 172 G~LFG~~~Gtlls~iGat 189 (205)
|.++.+..|..+..+|.+
T Consensus 34 ~~~~s~~lg~~~lAlg~v 51 (191)
T PF04156_consen 34 GALISFILGIALLALGVV 51 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544433
No 85
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=41.43 E-value=61 Score=24.59 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=6.9
Q ss_pred HHhhhhcHHHHH
Q 028702 118 GTMGYVYKDQIN 129 (205)
Q Consensus 118 ~l~~~l~~~~i~ 129 (205)
...++++.+++.
T Consensus 71 ~~~g~i~~~dl~ 82 (85)
T PF07330_consen 71 IVSGWISLDDLP 82 (85)
T ss_pred HHhccccHHHhh
Confidence 455666666554
No 86
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=41.11 E-value=1.1e+02 Score=29.15 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=6.3
Q ss_pred HHHHHHHhhCCh
Q 028702 134 QFSGFIEGYGPA 145 (205)
Q Consensus 134 ~L~~~i~~~G~~ 145 (205)
....+++..+-.
T Consensus 310 ~~~~F~~G~~~~ 321 (465)
T PF03606_consen 310 IVKAFFKGMGDM 321 (465)
T ss_pred HHHHHHHHHHHH
Confidence 445555655544
No 87
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=41.11 E-value=1.4e+02 Score=21.92 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=20.8
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 028702 134 QFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLL 174 (205)
Q Consensus 134 ~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~L 174 (205)
++.++++++|.+. +.+...+-.+|..++++++|+.
T Consensus 61 ~~~~~~~~~g~~~------l~~~~~~P~~P~~~~~~~ag~~ 95 (123)
T PF09335_consen 61 RIERWFQKYGFWV------LFLSRFIPGLPFDVVNYLAGIT 95 (123)
T ss_pred HHHHHHhhhhHHH------HHHHHHHHHccHHHHHHHHHcc
Confidence 3666666666443 2222233347888888888863
No 88
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=40.17 E-value=1.9e+02 Score=23.66 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHhhh
Q 028702 127 QINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFG-SVTGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 127 ~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG-~~~Gtlls~iGatlGA~laFlLgR~ 201 (205)
.+.+..+++.+-.+.-..+.+...++.+++... +-.++|| -|.-.+++.+.+.++..+..++.|+
T Consensus 83 ~~~ea~~~L~~I~~~~~~y~~~~~~l~~~l~~~----------~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~r~ 148 (193)
T PF06738_consen 83 SLEEAIERLDEIDREPPRYPPWLVILAAGLASA----------AFALLFGGSWIDMIVAFILGLLVGLLRQLLSRR 148 (193)
T ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555444444336777777777766442 2234454 4666667777777777776666664
No 89
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=40.15 E-value=29 Score=25.71 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=14.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH
Q 028702 170 SAGLLFGSVTGTIIVSISGTVS 191 (205)
Q Consensus 170 aaG~LFG~~~Gtlls~iGatlG 191 (205)
--|.+||.+.|+++.++=..+.
T Consensus 46 DiGIlYG~viGlli~~~~~~l~ 67 (70)
T TIGR01149 46 DIGILYGLVIGLILFLIYILLS 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888877765544433
No 90
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=39.66 E-value=34 Score=36.69 Aligned_cols=15 Identities=7% Similarity=-0.110 Sum_probs=8.5
Q ss_pred CCcCChhhHHHHHHH
Q 028702 93 GLEGDTAVKGSILAG 107 (205)
Q Consensus 93 ~~~~~~a~r~~iLa~ 107 (205)
+|.++-..|++....
T Consensus 341 DeD~SWkVRRaAaKc 355 (1233)
T KOG1824|consen 341 DEDMSWKVRRAAAKC 355 (1233)
T ss_pred ccchhHHHHHHHHHH
Confidence 455666666655553
No 91
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=39.35 E-value=2.4e+02 Score=27.82 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=19.5
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHhhhc
Q 028702 176 GSVTGTIIVSI-SGTVSGSKCCIFDCPI 202 (205)
Q Consensus 176 G~~~Gtlls~i-GatlGA~laFlLgR~l 202 (205)
|++.|++++++ |..++-..+..+.|.+
T Consensus 464 G~vKGFA~Tl~lGi~~smfta~~~tr~l 491 (506)
T COG0342 464 GPVKGFAVTLILGILTSMFTAIPVTRLL 491 (506)
T ss_pred CCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 78999998875 6666666666666654
No 92
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=39.22 E-value=3.3e+02 Score=25.57 Aligned_cols=51 Identities=12% Similarity=-0.039 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 146 GYALFVAVYAGLEILAIPAIPLTMSAG-LLFGSVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 146 gpl~filiy~l~~vl~iP~~~LtlaaG-~LFG~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
-.+..+++|++..+...+..+-.+..+ .+| +++.+--.+-..+.+.++|.+
T Consensus 266 ~~lg~~lly~ffa~IGa~a~i~~l~~ap~~~------l~~~i~l~iH~~l~l~~~kl~ 317 (378)
T PF05684_consen 266 SELGTFLLYLFFAVIGASADISELLDAPSLF------LFGFIILAIHLLLMLILGKLF 317 (378)
T ss_pred HHHHHHHHHHHHHHHccccCHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666444443332 121 111222344445566677643
No 93
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=39.17 E-value=2.3e+02 Score=23.77 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=22.5
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHhhCChHH
Q 028702 119 TMGYVYKDQINAFLTQFSGFIEGYGPAGY 147 (205)
Q Consensus 119 l~~~l~~~~i~~~l~~L~~~i~~~G~~gp 147 (205)
+.....++..+..++++++|+++|+....
T Consensus 169 l~~~~~~~r~~~~l~r~~~wl~~~~~~i~ 197 (214)
T PF11139_consen 169 LAYLVAPERAEPWLERLRSWLRRHSRQIL 197 (214)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHccHHHH
Confidence 44455678888999999999999875544
No 94
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=38.74 E-value=1.8e+02 Score=25.35 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=28.9
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhh-----hhhHHHHHH
Q 028702 135 FSGFIEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLL-----FGSVTGTII 183 (205)
Q Consensus 135 L~~~i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~L-----FG~~~Gtll 183 (205)
+.+|+...-..+.+..++.++...++.+| ..++++.+|++ +|++.+++.
T Consensus 205 ~~~y~~~~~~~~~i~g~~~~i~~~~~gvp~a~~~~~l~~~~~~IP~vG~~i~~ip 259 (341)
T TIGR02872 205 AFGFLKAQLILVLITFVIVLIGLLIIGVDYALTLALIIGIVDILPILGPGAVLVP 259 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 44444444444444555556666667789 67788888854 466555433
No 95
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=38.72 E-value=2.2e+02 Score=29.34 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 028702 175 FGSVTGTIIVSISGTVSGSKC 195 (205)
Q Consensus 175 FG~~~Gtlls~iGatlGA~la 195 (205)
..++.|.+.+.++..+|..++
T Consensus 74 iaFliGa~~S~laGyiGM~vA 94 (682)
T PF03030_consen 74 IAFLIGALCSALAGYIGMRVA 94 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555444
No 96
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=38.43 E-value=34 Score=25.35 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=13.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHH
Q 028702 171 AGLLFGSVTGTIIVSISGTVS 191 (205)
Q Consensus 171 aG~LFG~~~Gtlls~iGatlG 191 (205)
-|.+||.+.|+++.++=..++
T Consensus 47 iGIlYG~v~Glii~~~~~~l~ 67 (70)
T PF04210_consen 47 IGILYGLVIGLIIFIIYIVLS 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777666544443
No 97
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=37.73 E-value=32 Score=33.89 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHH
Q 028702 147 YALFVAVYAGLEILAIPAIPLTMSAG 172 (205)
Q Consensus 147 pl~filiy~l~~vl~iP~~~LtlaaG 172 (205)
|+.=-++.++...+.+|+.+..+++|
T Consensus 294 Pf~~gIIpiI~l~F~i~GivYG~~sG 319 (502)
T PF03806_consen 294 PFMKGIIPIIFLFFLIPGIVYGIASG 319 (502)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhc
Confidence 33333444444444555554444444
No 98
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.71 E-value=22 Score=33.72 Aligned_cols=6 Identities=33% Similarity=0.667 Sum_probs=2.8
Q ss_pred HhcCCh
Q 028702 159 ILAIPA 164 (205)
Q Consensus 159 vl~iP~ 164 (205)
++++|.
T Consensus 204 ivLFPL 209 (372)
T KOG2927|consen 204 IVLFPL 209 (372)
T ss_pred HHhccc
Confidence 344553
No 99
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=37.66 E-value=1.9e+02 Score=22.21 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 028702 181 TIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 181 tlls~iGatlGA~laFlLgR~lgR 204 (205)
.+...++..+.+.+.++++|.+|.
T Consensus 70 ~~~~~i~~~i~~~~~~~~~~~~gg 93 (172)
T PF04893_consen 70 FIIILIGWFILALILHLIAKLFGG 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333456666666666666666653
No 100
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=37.45 E-value=1.5e+02 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=11.7
Q ss_pred CChHHHHHHHHhhhhhHHH
Q 028702 162 IPAIPLTMSAGLLFGSVTG 180 (205)
Q Consensus 162 iP~~~LtlaaG~LFG~~~G 180 (205)
+....+...+|..-....-
T Consensus 272 id~~~i~~I~~~sL~~fl~ 290 (368)
T PF03616_consen 272 IDRKTIDRISGISLDLFLA 290 (368)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5666677777766555443
No 101
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=36.97 E-value=2.3e+02 Score=23.15 Aligned_cols=24 Identities=8% Similarity=-0.107 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 028702 178 VTGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 178 ~~Gtlls~iGatlGA~laFlLgR~ 201 (205)
..|.++..++..+.-.+.-.+.||
T Consensus 148 glGlll~~~~~~l~k~~~~~~~~y 171 (181)
T PF08006_consen 148 GLGLLLIVITFYLTKLFIKLTVRY 171 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 102
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=36.96 E-value=1.9e+02 Score=23.85 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=15.2
Q ss_pred ccCCcCChhhHHHHHHHHHHHHHHH
Q 028702 91 SEGLEGDTAVKGSILAGVLLLVVVG 115 (205)
Q Consensus 91 ~~~~~~~~a~r~~iLa~vlll~llg 115 (205)
|-|-=-..+.|..+++....+..++
T Consensus 80 e~GfFsP~SwWPl~la~~~al~~lG 104 (137)
T PF12270_consen 80 ELGFFSPHSWWPLVLAAAAALVFLG 104 (137)
T ss_pred CcCcCCCccHhHHHHHHHHHHHHHH
Confidence 3344456677887777666555554
No 103
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=36.25 E-value=1.5e+02 Score=25.56 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhCC-hHHHHHHH
Q 028702 130 AFLTQFSGFIEGYGP-AGYALFVA 152 (205)
Q Consensus 130 ~~l~~L~~~i~~~G~-~gpl~fil 152 (205)
.....+.+.++.+|- ..|++|++
T Consensus 150 ~~~p~i~~~leryg~~l~p~v~I~ 173 (191)
T PF03596_consen 150 ARIPIIAEFLERYGRWLVPIVYIG 173 (191)
T ss_pred hCChHHHHHHHHhcccHHHHHHHH
Confidence 334455566666664 35555553
No 104
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=35.97 E-value=96 Score=20.78 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=22.5
Q ss_pred HHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHhhhccc
Q 028702 168 TMSAGLLFGSVTG--TIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 168 tlaaG~LFG~~~G--tlls~iGatlGA~laFlLgR~lgR 204 (205)
--++|.+.|...| ..=+.+|+.+|+.+...++++.-+
T Consensus 6 GA~~Ga~iG~~~g~~~~ga~iGa~vGa~~G~~ig~~~d~ 44 (46)
T PF13488_consen 6 GAAAGAAIGAATGGPGKGAAIGAAVGAAVGAAIGNYMDK 44 (46)
T ss_pred HHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555554444 234567778888888887777543
No 105
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=35.94 E-value=1.2e+02 Score=29.59 Aligned_cols=64 Identities=6% Similarity=0.042 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHH--HHhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHh
Q 028702 97 DTAVKGSILAGVLLLVVVGGF--GTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEIL 160 (205)
Q Consensus 97 ~~a~r~~iLa~vlll~llg~~--~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~vl 160 (205)
.+.+|+++..=+++..++..+ +++++...+.-++..+.+..+.+++--.-|+-|++-|.+..+.
T Consensus 25 kGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~qq~~Fe~~~~~~d~~~~~iPLtFmLGFfVt~Vv 90 (450)
T KOG3547|consen 25 KGSIWKAIWKELLIWLILYYIISVIYRFALTESQQETFEKFVMYCDSRLDFIPLTFMLGFFVTIVV 90 (450)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcccccccchHhhhhhHHHHH
Confidence 456788877655544443333 4555554444445667777888877766688888888776553
No 106
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=35.64 E-value=1.2e+02 Score=22.79 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHHHHH
Q 028702 106 AGVLLLVVVGGFGTMGYVYKDQINAFLTQ 134 (205)
Q Consensus 106 a~vlll~llg~~~l~~~l~~~~i~~~l~~ 134 (205)
.++++++++++++++.+.....+....+.
T Consensus 11 ~f~~~~~l~~~~~~~~~~~l~~~~~~~~~ 39 (181)
T PF12729_consen 11 GFGLIILLLLIVGIVGLYSLSQINQNVEE 39 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333434445555555555554444
No 107
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=35.37 E-value=7.2 Score=41.35 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=5.2
Q ss_pred CChHHHHHHHHHH
Q 028702 143 GPAGYALFVAVYA 155 (205)
Q Consensus 143 G~~gpl~filiy~ 155 (205)
.+.+.+.|++++.
T Consensus 943 iwIsi~SyilV~~ 955 (1096)
T TIGR00927 943 MWIAMFSYLMVWW 955 (1096)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 108
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=35.10 E-value=2.7e+02 Score=27.95 Aligned_cols=6 Identities=0% Similarity=-0.031 Sum_probs=2.4
Q ss_pred HHHHHH
Q 028702 153 VYAGLE 158 (205)
Q Consensus 153 iy~l~~ 158 (205)
.+.+..
T Consensus 86 ~~~l~~ 91 (599)
T PF06609_consen 86 AWTLAS 91 (599)
T ss_pred HHHHHH
Confidence 344433
No 109
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.05 E-value=82 Score=25.69 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=6.2
Q ss_pred HHHHHHHhhhhh
Q 028702 166 PLTMSAGLLFGS 177 (205)
Q Consensus 166 ~LtlaaG~LFG~ 177 (205)
++.+.+|++|+.
T Consensus 74 f~~issgIvy~y 85 (129)
T KOG3415|consen 74 FLGISSGIVYLY 85 (129)
T ss_pred HHHhhhhHHHHH
Confidence 344556666543
No 110
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=34.97 E-value=68 Score=29.75 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 028702 150 FVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKC 195 (205)
Q Consensus 150 filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~la 195 (205)
++-+|...+++.+=..+..+.||+++.++.|.++.-+|+++-+.+.
T Consensus 102 i~~tF~~ssIlLl~~Siss~iG~YiLapl~~~i~~~~gAaila~iv 147 (299)
T PF05884_consen 102 IVETFSWSSILLLGFSISSFIGGYILAPLFGIIFGPFGAAILAYIV 147 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4445566666666678889999999999999888877777766543
No 111
>PF14163 SieB: Superinfection exclusion protein B
Probab=34.88 E-value=1.3e+02 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=19.5
Q ss_pred HHHHhcCChHHHHHHHH----hhhhhHHHHHHHHHHHH
Q 028702 156 GLEILAIPAIPLTMSAG----LLFGSVTGTIIVSISGT 189 (205)
Q Consensus 156 l~~vl~iP~~~LtlaaG----~LFG~~~Gtlls~iGat 189 (205)
.+.++++|..++...+= ..|++|.|.+..+..+.
T Consensus 9 ~~~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~ 46 (151)
T PF14163_consen 9 SGLLLFLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSY 46 (151)
T ss_pred HHHHHHCCHHHHHHhCcchHHHhcchHHHHHHHHHHHH
Confidence 33455677666665544 45677777666554333
No 112
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=34.80 E-value=3.5e+02 Score=24.51 Aligned_cols=25 Identities=4% Similarity=0.101 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 180 GTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 180 Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
..++..+|..+|...+++-.|.+.|
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~ 304 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLR 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888777654
No 113
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=34.76 E-value=27 Score=35.50 Aligned_cols=6 Identities=0% Similarity=0.235 Sum_probs=2.5
Q ss_pred hhhHHH
Q 028702 98 TAVKGS 103 (205)
Q Consensus 98 ~a~r~~ 103 (205)
...+..
T Consensus 702 ~~~~~~ 707 (784)
T PF04931_consen 702 EEFRSA 707 (784)
T ss_pred HHHHHH
Confidence 344443
No 114
>PRK11677 hypothetical protein; Provisional
Probab=34.70 E-value=1.4e+02 Score=24.48 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 028702 107 GVLLLVVVGGFGTMGYVY 124 (205)
Q Consensus 107 ~vlll~llg~~~l~~~l~ 124 (205)
+.+++|+++++.+.++..
T Consensus 8 i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 446667777777777655
No 115
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=34.62 E-value=66 Score=24.43 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISGTVSGSKC 195 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGatlGA~la 195 (205)
.++.++.|++.|.+.|.. ++|..+|.+++
T Consensus 22 E~i~~~~~~~~Gi~~~~~--l~g~~lg~~~~ 50 (95)
T TIGR02762 22 EFLPGATLFGIGILSGKA--LIGLILGAAVM 50 (95)
T ss_pred HHHHHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence 445556666666666644 35555666444
No 116
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=34.62 E-value=21 Score=26.31 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHH
Q 028702 98 TAVKGSILAGVLLLV 112 (205)
Q Consensus 98 ~a~r~~iLa~vlll~ 112 (205)
..+...+...+++.+
T Consensus 65 ~~~~~~~~~~~ll~~ 79 (92)
T PF13038_consen 65 KYRVSRWTYPLLLIG 79 (92)
T ss_pred hhHhHHHHHHHHHHH
Confidence 444555555555544
No 117
>TIGR00846 caca2 calcium/proton exchanger. This model is generated from the calcium ion/proton exchangers of the CacA family.
Probab=33.98 E-value=3.9e+02 Score=24.81 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhcCCh
Q 028702 149 LFVAVYAGLEILAIPA 164 (205)
Q Consensus 149 ~filiy~l~~vl~iP~ 164 (205)
.++.+-++.....+|=
T Consensus 256 ~~iGl~lvai~tslpE 271 (365)
T TIGR00846 256 AFIGVILAPIVGNAAE 271 (365)
T ss_pred HHHHHHHHHHhcccHH
Confidence 4455555555555663
No 118
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=33.92 E-value=2e+02 Score=26.96 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=17.3
Q ss_pred HHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHH
Q 028702 167 LTMSAGLLFGSVTG---TIIVSISGTVSGSKCCIF 198 (205)
Q Consensus 167 LtlaaG~LFG~~~G---tlls~iGatlGA~laFlL 198 (205)
..+++-++++...| ......|.++|+.+-+++
T Consensus 140 ~~I~~~~~~~~~~~~~~i~~la~g~~~g~~~~~l~ 174 (451)
T PF03023_consen 140 SIILSLLLLSNSWGQENIYALAWGVLIGAIIQFLI 174 (451)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666 344455666666665443
No 119
>COG4720 Predicted membrane protein [Function unknown]
Probab=33.70 E-value=75 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 028702 166 PLTMSAGLLFGSVTGTIIVSISGTVSGS 193 (205)
Q Consensus 166 ~LtlaaG~LFG~~~Gtlls~iGatlGA~ 193 (205)
.+...+-++||+..|.+...+|..+-=.
T Consensus 42 a~i~las~lfGs~~G~lvg~iG~al~Dl 69 (177)
T COG4720 42 AGIALASFLFGSRAGALVGGLGHALKDL 69 (177)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 3556677888988888888777665433
No 120
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=33.38 E-value=2.3e+02 Score=28.40 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHh
Q 028702 117 FGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEIL 160 (205)
Q Consensus 117 ~~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~vl 160 (205)
+.++...++|+.+...+.+.+|+-++--|-++..+.++++.++.
T Consensus 25 ~~~~~i~~p~~~~~~~~~~~~~i~~~~GW~yil~~~~~l~f~l~ 68 (537)
T COG1292 25 LVLLGIRFPDQAETVINAIFSWITNNFGWYYILTVLLFLGFVLY 68 (537)
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555677888888899999999877667677666666665543
No 121
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=33.17 E-value=91 Score=25.88 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 168 TMSAGLLFGSV--TGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 168 tlaaG~LFG~~--~Gtlls~iGatlGA~laFlLgR~l 202 (205)
++.+++++|.. ..++++..|+.++..+..++.|..
T Consensus 53 ~~l~~l~~G~~~s~~f~~Sl~Ggl~S~~vM~ll~~~~ 89 (148)
T PF07456_consen 53 ILLGSLLFGTLFSPSFLFSLAGGLLSLLVMALLKKLF 89 (148)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678888887 368888888887777777776654
No 122
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=32.67 E-value=1.2e+02 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=17.6
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHhhhc
Q 028702 176 GSVTGTIIVSI-SGTVSGSKCCIFDCPI 202 (205)
Q Consensus 176 G~~~Gtlls~i-GatlGA~laFlLgR~l 202 (205)
|.+.|+.++++ |..++...++++.|.+
T Consensus 369 g~~~~fA~tl~igii~s~~~sl~vtr~~ 396 (397)
T TIGR01129 369 GPVKGFAVTLAIGIIASLFTALVFTRLL 396 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35777776655 5555556778888865
No 123
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=32.44 E-value=1.7e+02 Score=27.34 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 028702 139 IEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLLFGSVTGTIIVSISGTVSG 192 (205)
Q Consensus 139 i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~LFG~~~Gtlls~iGatlGA 192 (205)
++++++...--|.-.+++++.++=| .+-+++.-|+..+-+.|.+.+.+|.++=+
T Consensus 24 V~~~~Wlt~~ef~~~~alaq~~PGP~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~ 78 (368)
T TIGR00937 24 VDERQWMSEASYNDLVALAQFLPGPASSQVAIYLGYLLGGIVGAILAGLAFTLPS 78 (368)
T ss_pred HHhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3445555555566666666655555 23355566666666666666666665544
No 124
>PF15383 TMEM237: Transmembrane protein 237
Probab=31.97 E-value=1.9e+02 Score=25.94 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHH
Q 028702 107 GVLLLVVVGGFGTMGYVYKDQINA-FLTQFSGFIEGYGPAGYALFVAVYAGLEI 159 (205)
Q Consensus 107 ~vlll~llg~~~l~~~l~~~~i~~-~l~~L~~~i~~~G~~gpl~filiy~l~~v 159 (205)
+...=|++++++++..+.--.+.. ....+..+++.+..++..+=-+.|++.++
T Consensus 98 ~~~~hG~LAG~al~h~i~v~~l~~~~~~~~~~lL~~Y~~la~p~~~~fY~l~~i 151 (253)
T PF15383_consen 98 GLFCHGFLAGFALWHIIVVYVLAGYQLSTVSNLLSQYSPLAYPAQSLFYFLLAI 151 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777776665543322221 12234577788888777655555555443
No 125
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=31.96 E-value=4.8e+02 Score=25.26 Aligned_cols=24 Identities=0% Similarity=0.048 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhhcc
Q 028702 180 GTIIVSISGTVSGSK-CCIFDCPIF 203 (205)
Q Consensus 180 Gtlls~iGatlGA~l-aFlLgR~lg 203 (205)
+.++.++.+++|+++ +|++||+++
T Consensus 334 ~~vv~~~~~Vl~~~~~a~~vG~l~g 358 (414)
T PF03390_consen 334 QYVVIVLATVLGAVIGAFLVGKLVG 358 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555555555544 366677654
No 126
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=31.85 E-value=2.2e+02 Score=21.20 Aligned_cols=28 Identities=14% Similarity=-0.043 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 028702 173 LLFGSVTGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 173 ~LFG~~~Gtlls~iGatlGA~laFlLgR~ 201 (205)
..++++.|.+..++ +.++..+.-+..|-
T Consensus 41 ~~~~~~~g~~~~l~-~~~~~l~~~i~~Ri 68 (90)
T PF14110_consen 41 MGFSFGGGFLGLLL-GPLGFLLGIILWRI 68 (90)
T ss_pred hhhhHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 36667666666665 55556666666664
No 127
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=31.57 E-value=3.8e+02 Score=23.97 Aligned_cols=26 Identities=4% Similarity=-0.217 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028702 175 FGSVTGTIIVSISGTVSGSKCCIFDC 200 (205)
Q Consensus 175 FG~~~Gtlls~iGatlGA~laFlLgR 200 (205)
...|.-.+++.+...++..+++++.|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 60 LSLWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555666666666666
No 128
>PRK10847 hypothetical protein; Provisional
Probab=31.57 E-value=3.3e+02 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhCChHH
Q 028702 131 FLTQFSGFIEGYGPAGY 147 (205)
Q Consensus 131 ~l~~L~~~i~~~G~~gp 147 (205)
.+++.++|++++|.+..
T Consensus 113 ~l~~~~~~~~r~G~~~v 129 (219)
T PRK10847 113 YLDKTHQFYEKHGGKTI 129 (219)
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 46778889999987543
No 129
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=31.51 E-value=1.7e+02 Score=23.84 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCh---------HHHHHHHHhhhhhHHH
Q 028702 149 LFVAVYAGLEILAIPA---------IPLTMSAGLLFGSVTG 180 (205)
Q Consensus 149 ~filiy~l~~vl~iP~---------~~LtlaaG~LFG~~~G 180 (205)
+-+++|++...+.+|. .++.-.+||++|+...
T Consensus 29 ~s~~~YlllG~~GlPVFagg~gG~~~l~gPTgGyl~gf~~~ 69 (148)
T PF02632_consen 29 LSVLLYLLLGAIGLPVFAGGSGGLGYLLGPTGGYLLGFPLA 69 (148)
T ss_pred HHHHHHHHHHHHCCchhcCCCCchHHHhcCCChHHHHHHHH
Confidence 4466666666666662 3444455555555443
No 130
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=31.43 E-value=56 Score=24.32 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=29.9
Q ss_pred hhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 028702 122 YVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLE 158 (205)
Q Consensus 122 ~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~ 158 (205)
|...+...+++++++.|+=.|+.++.++.++.+.+..
T Consensus 19 Wl~~~~~~~hl~rvE~WilrNp~~al~a~~l~w~lg~ 55 (75)
T PF01004_consen 19 WLDSDSAWKHLTRVESWILRNPGYALAAVALAWMLGS 55 (75)
T ss_pred cccCccHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Confidence 5556677888999999999999888888777777654
No 131
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=31.42 E-value=2.7e+02 Score=30.30 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHH
Q 028702 161 AIPAIPLTMSAGL-LFGSVTGTIIVSISGTVSGSKC 195 (205)
Q Consensus 161 ~iP~~~LtlaaG~-LFG~~~Gtlls~iGatlGA~la 195 (205)
++|..++-+++|+ +++.|...+..-+|..+.+..+
T Consensus 531 alP~pl~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 566 (1109)
T PRK10929 531 ASPLPVLWAALGYGLQNAWPYPLAVAIGDGVTATVP 566 (1109)
T ss_pred HhHHHHHHHHHHHHhhhhhhhhhHhhccHHHHHHHH
Confidence 3577677667776 5665655555556666555544
No 132
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=31.12 E-value=2.6e+02 Score=27.59 Aligned_cols=40 Identities=8% Similarity=-0.025 Sum_probs=28.4
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Q 028702 119 TMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLE 158 (205)
Q Consensus 119 l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~ 158 (205)
++....+|...+..+.+.+|+.++--|.+..+..++++..
T Consensus 27 ~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~~~~~~~~~~~ 66 (504)
T PRK03356 27 WLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGW 66 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445668888999999999998776666665555555543
No 133
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=31.02 E-value=2.1e+02 Score=26.48 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=12.8
Q ss_pred HHHHHHhhCChHHHHH
Q 028702 135 FSGFIEGYGPAGYALF 150 (205)
Q Consensus 135 L~~~i~~~G~~gpl~f 150 (205)
+.+++.+++.+.|++-
T Consensus 210 l~~~l~~~~~~~plia 225 (298)
T PF11449_consen 210 LAALLSGNGILQPLIA 225 (298)
T ss_pred HHHHHHhCchHHHHHH
Confidence 6788899998888763
No 134
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=30.99 E-value=2.4e+02 Score=24.28 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 028702 138 FIEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCC 196 (205)
Q Consensus 138 ~i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laF 196 (205)
++++.++..--=|.=+.++..+++=| ++=+.+.-|+..+-+.|.++++++.++=+++..
T Consensus 36 ~V~~r~Wis~~ef~~~laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~ 95 (195)
T COG2059 36 VVERRKWISEEEFADALAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIM 95 (195)
T ss_pred HHHhccCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666 566778888888888888888887777665543
No 135
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=30.36 E-value=42 Score=24.52 Aligned_cols=6 Identities=17% Similarity=-0.152 Sum_probs=2.4
Q ss_pred hhhHHH
Q 028702 98 TAVKGS 103 (205)
Q Consensus 98 ~a~r~~ 103 (205)
.+-|++
T Consensus 29 s~gwra 34 (71)
T PF15451_consen 29 SAGWRA 34 (71)
T ss_pred cccHHH
Confidence 334443
No 136
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=30.11 E-value=97 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhC----ChHHH-HHHHHHHHHH
Q 028702 131 FLTQFSGFIEGYG----PAGYA-LFVAVYAGLE 158 (205)
Q Consensus 131 ~l~~L~~~i~~~G----~~gpl-~filiy~l~~ 158 (205)
..+.+..|+.++. .|+|+ +|++++++..
T Consensus 107 vk~~~~~wi~en~~~seiw~pi~iyv~l~illl 139 (143)
T PF06198_consen 107 VKEFLSIWINENRFYSEIWGPIAIYVCLFILLL 139 (143)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHH
Confidence 3445667777553 56664 6777776643
No 137
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=30.09 E-value=2.2e+02 Score=20.78 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 028702 127 QINAFLTQFSGFIEGYGP 144 (205)
Q Consensus 127 ~i~~~l~~L~~~i~~~G~ 144 (205)
+-......+..++++.|.
T Consensus 32 ~k~~~~k~i~~yL~e~gy 49 (85)
T PF11337_consen 32 QKHKAEKAIDWYLQEQGY 49 (85)
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 333455667777777664
No 138
>PRK00523 hypothetical protein; Provisional
Probab=29.89 E-value=2.2e+02 Score=21.18 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=5.3
Q ss_pred HHHHHHhhCCh
Q 028702 135 FSGFIEGYGPA 145 (205)
Q Consensus 135 L~~~i~~~G~~ 145 (205)
+..+++++++.
T Consensus 30 ~~k~l~~NPpi 40 (72)
T PRK00523 30 FKKQIRENPPI 40 (72)
T ss_pred HHHHHHHCcCC
Confidence 34455555543
No 139
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=29.75 E-value=38 Score=25.95 Aligned_cols=10 Identities=40% Similarity=0.597 Sum_probs=6.6
Q ss_pred ccccCCCCCC
Q 028702 66 GWFFNPKGDD 75 (205)
Q Consensus 66 ~~~~~~~~~~ 75 (205)
..|||.|+..
T Consensus 44 ~g~fn~kn~k 53 (94)
T PF05756_consen 44 NGFFNEKNGK 53 (94)
T ss_pred hccccccCCC
Confidence 4677777655
No 140
>PHA03265 envelope glycoprotein D; Provisional
Probab=29.58 E-value=45 Score=31.85 Aligned_cols=72 Identities=21% Similarity=0.162 Sum_probs=29.8
Q ss_pred CCchhhhh---hhhhccccCCCCCcccc--cccCCCCCCCchhhhhcCCCCCccccCCcCChhhHHHHHHHHHHHHHH
Q 028702 42 CSSLKQTK---KQNTLQKSTTNAPRSLG--WFFNPKGDDDDNNNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLVVV 114 (205)
Q Consensus 42 ~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~~iLa~vlll~ll 114 (205)
-|...|.| ||.+ ...++|+|+..- -.+.|.-|+-|+-.+.+++.--....++.--+...+..++++++++.+
T Consensus 291 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~s~~~~~~~g~~ig~~i~glv~vg~i 367 (402)
T PHA03265 291 ESEITQNKTDPKPGQ-ADPKPNQPFKWPSIKHLAPRLDEVDNVIEPTTKPPPTSKSNSTFVGISVGLGIAGLVLVGVI 367 (402)
T ss_pred hhHhhccCCCCCccc-CCCCCCCCCCCcchhhhccchhhhccccccccCCCCCCCCCCcccceEEccchhhhhhhhHH
Confidence 34444532 3334 344577776441 123444443333233222221222223344444555555555554444
No 141
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=29.57 E-value=3.4e+02 Score=22.75 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=10.7
Q ss_pred HHHHHHHhhhhhHHHHH
Q 028702 166 PLTMSAGLLFGSVTGTI 182 (205)
Q Consensus 166 ~LtlaaG~LFG~~~Gtl 182 (205)
..++.+|.++|...|.+
T Consensus 55 ~~~~v~g~~~G~i~g~~ 71 (210)
T PF13886_consen 55 GASVVAGVLGGIILGLL 71 (210)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555677777666665
No 142
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=29.54 E-value=2.8e+02 Score=26.86 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=11.8
Q ss_pred CCCCccc--ccccCCCCCCCc
Q 028702 59 TNAPRSL--GWFFNPKGDDDD 77 (205)
Q Consensus 59 ~~~~~~~--~~~~~~~~~~~~ 77 (205)
-|+|.++ -...||..++++
T Consensus 201 m~~p~gli~Akii~P~t~~~~ 221 (404)
T COG1972 201 MNAPGGLLFAKLINPYTEDEQ 221 (404)
T ss_pred HhcchHHHHHHhcCCCCCCcc
Confidence 3556555 667888765544
No 143
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.41 E-value=2.7e+02 Score=21.51 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHhcCChHHHHHHHHhhhhhHHHHHHHHHH
Q 028702 158 EILAIPAIPLTMSAGLLFGSVTGTIIVSIS 187 (205)
Q Consensus 158 ~vl~iP~~~LtlaaG~LFG~~~Gtlls~iG 187 (205)
+..++|.++..+..-+++|+|.+..+.-.-
T Consensus 48 TLsFiPKIiai~~~l~~~gpWm~~~l~dft 77 (89)
T COG1987 48 TLSFIPKIIAVFLVLILLGPWMLNQLLDFT 77 (89)
T ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566789888888999999999887665443
No 144
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=29.29 E-value=78 Score=31.92 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH-H-HhcCC---hHHHHHHHHhhhhhHHHHHHHHHH
Q 028702 113 VVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGL-E-ILAIP---AIPLTMSAGLLFGSVTGTIIVSIS 187 (205)
Q Consensus 113 llg~~~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~-~-vl~iP---~~~LtlaaG~LFG~~~Gtlls~iG 187 (205)
+.|++++..-.....+..+...-...+++.+.|..+..+.+-++. + +..=+ .+++-+++.+.=-.-..-+|.++.
T Consensus 439 lgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~TeF~Sntata~IfiPIl~ela~~l~~hplyl~lp 518 (586)
T KOG1281|consen 439 LGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVVTEFVSNTATASIFIPILAELAEALGIHPLYLMLP 518 (586)
T ss_pred hccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHhcchhheeehHHhHHHHHHhcCCCCceeehh
Confidence 334454444444444444444433447888888776544433332 2 22211 244444444332222333457888
Q ss_pred HHHHHHHHHHH
Q 028702 188 GTVSGSKCCIF 198 (205)
Q Consensus 188 atlGA~laFlL 198 (205)
++++++.+|.+
T Consensus 519 ~tl~~SfAf~L 529 (586)
T KOG1281|consen 519 TTLACSFAFML 529 (586)
T ss_pred HHHHHHHHHhc
Confidence 99999998876
No 145
>PRK09272 hypothetical protein; Provisional
Probab=29.27 E-value=2.9e+02 Score=21.84 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 028702 99 AVKGSILAGVLLLVVVGGF 117 (205)
Q Consensus 99 a~r~~iLa~vlll~llg~~ 117 (205)
...+.+++.+.++.+++.+
T Consensus 25 p~~ggliAaLPLvs~l~li 43 (109)
T PRK09272 25 PTLGGLIAALPLVSLLSLI 43 (109)
T ss_pred chHHHHHHHhHHHHHHHHH
Confidence 4555666666666666544
No 146
>PRK12369 putative transporter; Reviewed
Probab=29.15 E-value=4.6e+02 Score=24.11 Aligned_cols=20 Identities=0% Similarity=-0.260 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 028702 185 SISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 185 ~iGatlGA~laFlLgR~lgR 204 (205)
++=+++|..+++++||.+-+
T Consensus 176 iiyai~gt~it~~iGr~L~~ 195 (326)
T PRK12369 176 LLISLGGLVISWFVGIKLPG 195 (326)
T ss_pred HHHHHHHHHHHHHHcCcCch
Confidence 34466777788888987653
No 147
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=28.95 E-value=1e+02 Score=23.92 Aligned_cols=34 Identities=6% Similarity=-0.153 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDC 200 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR 200 (205)
.++.++.+++.|.+.|- .++|..+|+.+.+.+.|
T Consensus 28 E~~~~~~~~~~Gi~~~~--~l~g~i~g~~~~~~~r~ 61 (101)
T PRK13707 28 ELIPAAICIGWGITTSK--YLFGIIAAVLVWFGIRK 61 (101)
T ss_pred HHHHHHHHHHHHHHHch--HHHHHHHHHHHHHHHHH
Confidence 34444555555665553 46677777777666665
No 148
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=28.80 E-value=55 Score=30.08 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCchhhhh--cCCCCCccccCCcCChhhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q 028702 74 DDDDNNNRI--QGNGMDAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGF 138 (205)
Q Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~a~r~~iLa~vlll~llg~~~l~~~l~~~~i~~~l~~L~~~ 138 (205)
++++++.+| .++-||.+-|-|+.+...++.+-..+.++.+++.+.+ |.+.-....++|++.=|
T Consensus 276 ~~e~~~~~e~~~~~~ee~~ldl~~I~~QslrL~~~~l~~~~~~~l~~i--Wsdll~a~s~Ld~ItLW 340 (340)
T PF12794_consen 276 AEEEESSEEGGAEEVEEPELDLEQISQQSLRLLRSILLLILLVGLYWI--WSDLLPAFSYLDNITLW 340 (340)
T ss_pred cccccCCccccCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcccccC
No 149
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=28.78 E-value=3.5e+02 Score=24.37 Aligned_cols=42 Identities=33% Similarity=0.501 Sum_probs=27.4
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhh
Q 028702 133 TQFSGFIEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLL 174 (205)
Q Consensus 133 ~~L~~~i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~L 174 (205)
+.+++|+...-..+.+.-++.++...++.+| +..+++.+|++
T Consensus 203 ~~~~~y~~gq~i~al~~gi~~~igl~ilgvp~alllgil~g~~ 245 (355)
T COG0628 203 ATLSGYLRGQVLVALIVGILTGIGLLILGVPYALLLGLLAGLL 245 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4566777765555555555666666677788 67777777754
No 150
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=28.59 E-value=1.2e+02 Score=26.65 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHhhh
Q 028702 153 VYAGLEILAIPAIPLTMSAGLLFG------SVTGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 153 iy~l~~vl~iP~~~LtlaaG~LFG------~~~Gtlls~iGatlGA~laFlLgR~ 201 (205)
..++.+++++|.++++-.-|+=|. .-+|..++++...+-+++.+++-|+
T Consensus 260 ~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkr 314 (318)
T TIGR00383 260 ILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRR 314 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566776666666665554 2367777777777766666666553
No 151
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=28.33 E-value=1.8e+02 Score=22.32 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=11.2
Q ss_pred HHHhhCChHHHHHHHHHHH
Q 028702 138 FIEGYGPAGYALFVAVYAG 156 (205)
Q Consensus 138 ~i~~~G~~gpl~filiy~l 156 (205)
++.+.|.|-.++-+++.++
T Consensus 60 ~m~~lG~WN~~IGFg~~i~ 78 (87)
T PRK00159 60 WMADLGPWNYAIGFALMIT 78 (87)
T ss_pred CCcccCchhHHHHHHHHHH
Confidence 5566777766555544444
No 152
>PRK10692 hypothetical protein; Provisional
Probab=28.21 E-value=1.1e+02 Score=23.84 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISGTVSG 192 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGatlGA 192 (205)
.+=-++-|.+||.+.|.++=++|+-+|.
T Consensus 38 Lp~~~~~gal~~IFiGAllWL~GArigG 65 (92)
T PRK10692 38 LPQFFAHGALLSIFVGALLWLAGARVGG 65 (92)
T ss_pred chHHHHhhHHHHHHHHHHHHHhcccccC
Confidence 3445677889999999988888877663
No 153
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=27.84 E-value=20 Score=29.55 Aligned_cols=7 Identities=43% Similarity=0.709 Sum_probs=3.4
Q ss_pred CCCchhh
Q 028702 41 PCSSLKQ 47 (205)
Q Consensus 41 ~~~~~~~ 47 (205)
|+.+||.
T Consensus 65 ~lAtLk~ 71 (149)
T PF03066_consen 65 PLATLKM 71 (149)
T ss_dssp EEEEEBT
T ss_pred EEEEecC
Confidence 4445554
No 154
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=27.81 E-value=2.9e+02 Score=24.67 Aligned_cols=70 Identities=13% Similarity=-0.023 Sum_probs=36.8
Q ss_pred HhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 028702 119 TMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIF 198 (205)
Q Consensus 119 l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlL 198 (205)
..+-.+.|+.+..++++..--..++.|..++..++...... .+..|.|.-..++.+.+.++..+.+++
T Consensus 100 ~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~~f~------------~l~gG~w~d~~iaf~~~~~~~~~~~~l 167 (250)
T COG2966 100 EHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAAAFA------------LLFGGGWLDFLIAFFAGLLGFLLRQYL 167 (250)
T ss_pred HcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHHHHH------------HHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34456667776666666544445666655544443333221 122345555555555555555555555
Q ss_pred hh
Q 028702 199 DC 200 (205)
Q Consensus 199 gR 200 (205)
.|
T Consensus 168 ~r 169 (250)
T COG2966 168 SR 169 (250)
T ss_pred HH
Confidence 54
No 155
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.79 E-value=20 Score=33.57 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHhcC
Q 028702 143 GPAGYALFVAVYAGLEILAI 162 (205)
Q Consensus 143 G~~gpl~filiy~l~~vl~i 162 (205)
.+|..++|.+.|.++.++.|
T Consensus 135 s~WtiLaFcLAF~LaivlLI 154 (381)
T PF05297_consen 135 SFWTILAFCLAFLLAIVLLI 154 (381)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888766544
No 156
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=27.77 E-value=1.7e+02 Score=21.03 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 028702 181 TIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 181 tlls~iGatlGA~laFlLgR~ 201 (205)
.+..+++..++..++|++-|.
T Consensus 33 ~~~~l~A~vis~~lS~~ll~~ 53 (69)
T PF14012_consen 33 LVAALLALVISMPLSYVLLRR 53 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778888877664
No 157
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=27.58 E-value=5.5e+02 Score=24.52 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHhhCChHHHHHHHHHHHHHHhcCCh--HHHHHHH-------Hhhhh---hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 136 SGFIEGYGPAGYALFVAVYAGLEILAIPA--IPLTMSA-------GLLFG---SVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 136 ~~~i~~~G~~gpl~filiy~l~~vl~iP~--~~Ltlaa-------G~LFG---~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
..|+|-+.-.-|++-+..+-..++..+|. .-+.+-- |+-|- +-.|+.+..++-.+|-..+++++||.
T Consensus 130 ~vYvEiFRNiPpLL~IfFWYf~Vl~~LP~ar~s~~l~~~~~L~nrG~~~p~P~~geG~~~~~lA~~~~I~~s~~~~r~a 208 (397)
T COG4597 130 TVYVEIFRNIPPLLQIFFWYFGVLSVLPGARQSVSLPDLIFLSNRGLYFPSPQWGEGFIAFILALVMAIVASVFLARWA 208 (397)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhCCChhhccccccceeecccccccCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34666555555665555555555555663 2222221 33333 23689999999999999999999985
No 158
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=27.57 E-value=1.1e+02 Score=23.67 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHH
Q 028702 164 AIPLTMSAGLLFG-SVTGTIIVSISGTVSGSKCCI 197 (205)
Q Consensus 164 ~~~LtlaaG~LFG-~~~Gtlls~iGatlGA~laFl 197 (205)
+.+...+-|++|+ |+.|. .+|+.+||...-+
T Consensus 4 G~~~G~LiGll~~~pl~G~---~~GA~~Gal~G~l 35 (102)
T PF06897_consen 4 GALWGLLIGLLFGPPLLGA---AVGAAAGALAGAL 35 (102)
T ss_pred hhHHHHHHHHHhhhHHHHH---HHHHHHHHHHhHH
No 159
>PRK10734 putative calcium/sodium:proton antiporter; Provisional
Probab=27.42 E-value=4.8e+02 Score=23.83 Aligned_cols=13 Identities=8% Similarity=0.025 Sum_probs=5.1
Q ss_pred HHHHHHHHHhcCC
Q 028702 151 VAVYAGLEILAIP 163 (205)
Q Consensus 151 iliy~l~~vl~iP 163 (205)
+.+.+++....+|
T Consensus 211 iG~tiva~gtslP 223 (325)
T PRK10734 211 IGLTVIAIGTSLP 223 (325)
T ss_pred HHHHHHHHhccHH
Confidence 3333333334444
No 160
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=27.37 E-value=2.7e+02 Score=23.31 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=37.5
Q ss_pred HhhCChHHHHHHHHHHHHHHh------cCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028702 140 EGYGPAGYALFVAVYAGLEIL------AIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDC 200 (205)
Q Consensus 140 ~~~G~~gpl~filiy~l~~vl------~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR 200 (205)
++.+++.-+.+++...-..+. +=|+++++. .|++||.+.|.+..++...+...++....|
T Consensus 98 ~~~~~~~r~~~~~~~~d~~i~~~t~~~f~p~vplt~-~gi~~g~vg~l~~~~l~~~l~~l~~~~~rr 163 (167)
T PF11157_consen 98 AQASPFERAWYFLRPADPEIAQETWQNFSPAVPLTP-EGIVFGLVGALLGALLVELLLGLLRRPFRR 163 (167)
T ss_pred hcCChHHHHHHHHhcccHHHHHHHHHhCCCcCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556777777777655432221 456666664 467788777777777777766666655444
No 161
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=27.31 E-value=2.1e+02 Score=24.90 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=8.5
Q ss_pred HHHHHHhcCChHHHHHHHHh
Q 028702 154 YAGLEILAIPAIPLTMSAGL 173 (205)
Q Consensus 154 y~l~~vl~iP~~~LtlaaG~ 173 (205)
.+++.++.+|..+++++.+.
T Consensus 224 ~~~~~~~s~~lsl~~Ia~aW 243 (248)
T PF07787_consen 224 FLVAFIISFSLSLLTIALAW 243 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333334444444444443
No 162
>PLN02816 mannosyltransferase
Probab=27.13 E-value=6.3e+02 Score=25.08 Aligned_cols=57 Identities=26% Similarity=0.223 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhCC------------hHHHHHHHHHHHHHHh
Q 028702 104 ILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGP------------AGYALFVAVYAGLEIL 160 (205)
Q Consensus 104 iLa~vlll~llg~~~l~~~l~~~~i~~~l~~L~~~i~~~G~------------~gpl~filiy~l~~vl 160 (205)
++..+++.-++.++..-.+..+|+.-+.+|..-..+-++|. .-|++|.++|-+...+
T Consensus 41 ~~~~~~~~R~~~al~~~t~f~pDE~fQslE~ah~~vfG~G~lTWEw~~~lRS~~~Pll~a~~~~~~~~l 109 (546)
T PLN02816 41 IFLFCLAFRVVNALLIQTYFNPDEHWQSLEVAHRTIFGYGYMTWEWKRGIRSYLHPMLFAFLYKLLQVT 109 (546)
T ss_pred HHHHHHHHHHHHHHHccccCCCCchhhhHHHHHHHHhCCcccceecCCCccchhHHHHHHHHHHHHHHh
Confidence 34434444444445445677778777777766555444441 2366666666554443
No 163
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=27.04 E-value=2e+02 Score=27.16 Aligned_cols=13 Identities=8% Similarity=0.008 Sum_probs=6.9
Q ss_pred ChhhHHHHHHHHH
Q 028702 97 DTAVKGSILAGVL 109 (205)
Q Consensus 97 ~~a~r~~iLa~vl 109 (205)
|...++.++...+
T Consensus 12 d~~~~k~~~k~~i 24 (459)
T PF10337_consen 12 DRRSLKIMFKCWI 24 (459)
T ss_pred CHHHHHHHHHHHH
Confidence 4455556665443
No 164
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=26.95 E-value=4.4e+02 Score=23.16 Aligned_cols=27 Identities=4% Similarity=-0.111 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 028702 177 SVTGTIIVSISGTVSGSKCCIFDCPIF 203 (205)
Q Consensus 177 ~~~Gtlls~iGatlGA~laFlLgR~lg 203 (205)
+|.+.+-.++...+.+.++|++++.++
T Consensus 208 ~~~~~l~~~~~G~~aa~vsy~iG~l~~ 234 (234)
T cd02433 208 PGISALRQLAIGGGAAAVTYLLGLLFG 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567888888889999999999998764
No 165
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=26.93 E-value=1.4e+02 Score=24.28 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=28.8
Q ss_pred CCcCChhhHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhCChHH
Q 028702 93 GLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGY 147 (205)
Q Consensus 93 ~~~~~~a~r~~iLa~vlll~llg~~~l~~~l~~~~i~~~l~~L~~~i~~~G~~gp 147 (205)
..+.++.||+.+|.++.+...+++ +.|+.-+ +.....+.+.+.+|+.+..
T Consensus 22 ~l~Pst~RWRiiL~v~svct~v~A---~~wL~Dp--~ts~~~~~~sL~~H~~Fti 71 (125)
T PF09771_consen 22 SLQPSTTRWRIILVVVSVCTAVGA---WHWLMDP--ETSQVSFLDSLWNHPFFTI 71 (125)
T ss_pred hcCCcchhHHHHHHHHHHHHHHHH---HHHhcCc--ccccchHHHHHHhCHhHHH
Confidence 356788999988876666555553 3443322 2233355566666665543
No 166
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=26.80 E-value=5.9e+02 Score=24.85 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=11.5
Q ss_pred CCcCChhhHHHHHHHHHHHHHH
Q 028702 93 GLEGDTAVKGSILAGVLLLVVV 114 (205)
Q Consensus 93 ~~~~~~a~r~~iLa~vlll~ll 114 (205)
.|+.+-.++-.++.+++.++.+
T Consensus 242 ae~le~S~~l~~lig~lg~~y~ 263 (438)
T TIGR00366 242 AEKLENSRVLALLIGALGIIYL 263 (438)
T ss_pred HHHHhcCHHHHHHHHHHHHHHH
Confidence 4445556665555555444444
No 167
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=26.76 E-value=1.6e+02 Score=22.03 Aligned_cols=34 Identities=9% Similarity=-0.045 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDC 200 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR 200 (205)
.++.++.+++.|.+.|- ..+|..+|..+.+.+.|
T Consensus 22 e~~~~~~~~~~gi~~~~--~~~g~i~g~~~~~~~~k 55 (95)
T PF07178_consen 22 EFIPALILFVIGILSGH--FLIGLILGIVLWWGYRK 55 (95)
T ss_pred HHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHH
Confidence 34445555556665555 23455555555555544
No 168
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.10 E-value=7.3e+02 Score=25.53 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHH---HHhcCChHHHHHHH
Q 028702 133 TQFSGFIEGYGPAGYALFVAVYAGL---EILAIPAIPLTMSA 171 (205)
Q Consensus 133 ~~L~~~i~~~G~~gpl~filiy~l~---~vl~iP~~~Ltlaa 171 (205)
..+.+-++=.|...-++||++-+.. .+++||...|-++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~ 103 (697)
T PF09726_consen 62 RSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAA 103 (697)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444434554445555544433 24579965554443
No 169
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=26.01 E-value=2.6e+02 Score=24.86 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=24.0
Q ss_pred HHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhH
Q 028702 138 FIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSV 178 (205)
Q Consensus 138 ~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~ 178 (205)
.+...-......+.++.+.+. +.+.+++..+..|.+.+.|
T Consensus 154 l~h~~~a~~l~~~~~vHiy~a-~~~~gsi~~mv~g~v~~~W 193 (218)
T COG2864 154 LLHAFAAVILIFIIIVHIYMA-FWVKGSIRGMVEGKVTETW 193 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHheeehhheeeechHHH
Confidence 334444444555666666665 6677777777677666654
No 170
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=25.95 E-value=3.5e+02 Score=26.88 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 028702 152 AVYAGLEILAIPAIPLTMSAG 172 (205)
Q Consensus 152 liy~l~~vl~iP~~~LtlaaG 172 (205)
++..+..++.+|+++..+++|
T Consensus 304 iv~~i~~~Fli~GivyG~~~g 324 (508)
T PRK11339 304 IVPLIILFFFVVSLAYGIATR 324 (508)
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 344444455566555555555
No 171
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=25.89 E-value=4.9e+02 Score=23.38 Aligned_cols=36 Identities=8% Similarity=0.127 Sum_probs=16.5
Q ss_pred HHhcCChHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028702 158 EILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVSGSK 194 (205)
Q Consensus 158 ~vl~iP~~~LtlaaG~LFG~~~Gtlls~iGatlGA~l 194 (205)
..+.++.+.+..+.|. .|...|+..--+-+-+-|.+
T Consensus 87 ~~lGi~~~~l~a~~G~-~glaiG~a~q~~l~N~~sGi 122 (286)
T PRK10334 87 GRVGVQTASVIAVLGA-AGLAVGLALQGSLSNLAAGV 122 (286)
T ss_pred HHcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3446774444434333 25555555544433333333
No 172
>PRK11098 microcin B17 transporter; Reviewed
Probab=25.88 E-value=6e+02 Score=24.40 Aligned_cols=30 Identities=3% Similarity=0.046 Sum_probs=19.8
Q ss_pred hhhhHHHHH--HHHHHHHHHHHHHHHHhhhcc
Q 028702 174 LFGSVTGTI--IVSISGTVSGSKCCIFDCPIF 203 (205)
Q Consensus 174 LFG~~~Gtl--ls~iGatlGA~laFlLgR~lg 203 (205)
++|.+.|.+ .+++=+.+|..++.++||.+-
T Consensus 238 i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~ 269 (409)
T PRK11098 238 IVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLP 269 (409)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHcccch
Confidence 567777732 234456777777888888764
No 173
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=25.49 E-value=4.6e+02 Score=22.97 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHH
Q 028702 165 IPLTMSAGLLFGSVTGTIIVS 185 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~ 185 (205)
.+....++++||++.|++...
T Consensus 68 ~lg~~l~~lllGp~~a~la~~ 88 (230)
T PRK11909 68 AVGGTLIAILLGPWAAVISIS 88 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 466777889999988877553
No 174
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=25.44 E-value=1.2e+02 Score=27.18 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=18.9
Q ss_pred HHHHhhCChHHHHHHHHHHHHHH
Q 028702 137 GFIEGYGPAGYALFVAVYAGLEI 159 (205)
Q Consensus 137 ~~i~~~G~~gpl~filiy~l~~v 159 (205)
+..++...|||++|+++|.+...
T Consensus 89 ~i~~d~DL~gPliF~lL~sLfLs 111 (227)
T COG5080 89 DILADCDLWGPLIFILLYSLFLS 111 (227)
T ss_pred hhhhcccccccHHHHHHHHHHHH
Confidence 45677889999999999988643
No 175
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=25.21 E-value=3.2e+02 Score=20.99 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISGTVS 191 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGatlG 191 (205)
..+.=..|.++|...|.+++++...+-
T Consensus 94 ~~~dr~lG~~~G~~~~~li~~~~~~~~ 120 (146)
T PF02674_consen 94 GWLDRLLGALLGLAKGLLILSLLLFLL 120 (146)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788888888887777554443
No 176
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=25.10 E-value=80 Score=26.42 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhhhh
Q 028702 110 LLVVVGGFGTMGYV 123 (205)
Q Consensus 110 ll~llg~~~l~~~l 123 (205)
++..+++.+...|.
T Consensus 27 vl~~~a~~~~~~~~ 40 (159)
T COG1580 27 VLLALAGAGYFFWF 40 (159)
T ss_pred HHHHHHHHHHHHhh
Confidence 33333333333333
No 177
>PF15113 TMEM117: TMEM117 protein family
Probab=25.07 E-value=1.8e+02 Score=28.10 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHH
Q 028702 100 VKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVA 152 (205)
Q Consensus 100 ~r~~iLa~vlll~llg~~~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~fil 152 (205)
-|.++...+-+++++.++.+.+++....+......+..+-|++|.|-...+..
T Consensus 62 gw~~LKv~lwllai~~GL~~GKfl~H~~Lfg~~~rlkmf~ed~Gswm~mF~st 114 (415)
T PF15113_consen 62 GWRALKVLLWLLAIFTGLIAGKFLFHQRLFGQLLRLKMFREDHGSWMTMFLST 114 (415)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhcccCCceehHHHHH
Confidence 45555555555666666666677776777777778888889999886554443
No 178
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.05 E-value=2.2e+02 Score=25.53 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHhcCC-hHHHHHHHHhhhhhH----------HHHHHH-HHHHHHHHHHHHHHhhh
Q 028702 135 FSGFIEGYGPAGYALFVAVYAGLEILAIP-AIPLTMSAGLLFGSV----------TGTIIV-SISGTVSGSKCCIFDCP 201 (205)
Q Consensus 135 L~~~i~~~G~~gpl~filiy~l~~vl~iP-~~~LtlaaG~LFG~~----------~Gtlls-~iGatlGA~laFlLgR~ 201 (205)
+.+|+...+ +++.-+++..+.-.| -.++++++|+++..- .|..+. .+=+++..+.+|..+|+
T Consensus 29 ~fQw~~~~~-----i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 29 FFQWVMCSG-----IFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred HHHHHHHHH-----HHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 345666544 333333333334444 788899999888543 233222 23445566667888876
No 179
>COG2426 Predicted membrane protein [Function unknown]
Probab=24.71 E-value=1.7e+02 Score=24.28 Aligned_cols=42 Identities=31% Similarity=0.502 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhcCC--hHHHHHHHHhhhhh
Q 028702 129 NAFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIP--AIPLTMSAGLLFGS 177 (205)
Q Consensus 129 ~~~l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP--~~~LtlaaG~LFG~ 177 (205)
+...++-..|+|.+|+.|..+|++ ..+| +..-...+.+++|.
T Consensus 69 ~r~~rka~~yVER~G~iGL~iFvA-------IPLP~TG~wtgaLaA~llgI 112 (142)
T COG2426 69 NRTRRKAKGYVERYGFIGLIIFVA-------IPLPGTGAWTGALAAYLLGI 112 (142)
T ss_pred HHHHHhccCcHhhhhhhhhhheee-------ccCCCccHhHHHHHHHHHcC
Confidence 333444567888888888766643 3455 44555555666654
No 180
>PLN02601 beta-carotene hydroxylase
Probab=24.50 E-value=1.8e+02 Score=26.95 Aligned_cols=8 Identities=13% Similarity=0.447 Sum_probs=3.4
Q ss_pred cCCCchhh
Q 028702 40 KPCSSLKQ 47 (205)
Q Consensus 40 ~~~~~~~~ 47 (205)
+-|.-+.+
T Consensus 47 ~~c~v~~~ 54 (303)
T PLN02601 47 TVCFVVEE 54 (303)
T ss_pred eEEEEecc
Confidence 44444433
No 181
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=24.49 E-value=5.5e+02 Score=23.67 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=11.5
Q ss_pred hHHHHHHHHhhhhhHHHHHH
Q 028702 164 AIPLTMSAGLLFGSVTGTII 183 (205)
Q Consensus 164 ~~~LtlaaG~LFG~~~Gtll 183 (205)
+.+++++.|.++|.+.|.++
T Consensus 91 ai~~all~g~l~G~l~G~lv 110 (344)
T PRK15432 91 ACLATLLLGLLAGFFNGVLV 110 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666543
No 182
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=24.46 E-value=1.5e+02 Score=26.93 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=24.2
Q ss_pred hCChHHHHHHHHHHHHHHh----------cCChHHHHHHHHhhhhhHHHHH
Q 028702 142 YGPAGYALFVAVYAGLEIL----------AIPAIPLTMSAGLLFGSVTGTI 182 (205)
Q Consensus 142 ~G~~gpl~filiy~l~~vl----------~iP~~~LtlaaG~LFG~~~Gtl 182 (205)
..++..+.++++..+.+.+ ++|...+.-+.|.+||.+.+..
T Consensus 244 ~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~ 294 (355)
T PF00654_consen 244 FSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSF 294 (355)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhh
Confidence 3556666777777776543 2445556666666666655555
No 183
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.45 E-value=1.8e+02 Score=21.14 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 028702 107 GVLLLVVVGGFGTMGYVY 124 (205)
Q Consensus 107 ~vlll~llg~~~l~~~l~ 124 (205)
+++++|++++|.+.++..
T Consensus 5 lali~G~~~Gff~ar~~~ 22 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYM 22 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666665544433
No 184
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=24.42 E-value=2.1e+02 Score=24.16 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=13.2
Q ss_pred HHHHHHHHhhh---h-hHHHHHHHHHHHHHHHH
Q 028702 165 IPLTMSAGLLF---G-SVTGTIIVSISGTVSGS 193 (205)
Q Consensus 165 ~~LtlaaG~LF---G-~~~Gtlls~iGatlGA~ 193 (205)
.++++.-|++| | .|+..+.+.+++.++-.
T Consensus 64 ~i~~~i~gl~~~~~G~~~~~~~~~ii~gliael 96 (189)
T TIGR02185 64 FIFGILLGLLFFLMGMYWPMIISSIIGGLLADI 96 (189)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 45555555544 3 23344444444444443
No 185
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=24.01 E-value=5.5e+02 Score=25.99 Aligned_cols=55 Identities=16% Similarity=0.346 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHHH--h-----cCChHHHH-------------HHHHhhhhhHHHHHHH-HHHHHHHHHHHHHH
Q 028702 144 PAGYALFVAVYAGLEI--L-----AIPAIPLT-------------MSAGLLFGSVTGTIIV-SISGTVSGSKCCIF 198 (205)
Q Consensus 144 ~~gpl~filiy~l~~v--l-----~iP~~~Lt-------------laaG~LFG~~~Gtlls-~iGatlGA~laFlL 198 (205)
+|....+.++|++..+ + -+|....+ +.+.+.-|.+-|.+.+ |.+..+|+++.|..
T Consensus 245 P~vl~~la~lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yia 320 (569)
T COG4232 245 PWVLGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIA 320 (569)
T ss_pred cHHHHHHHHHHHHHHHHhhhheeecCcHHHhhHHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHH
Confidence 5555555555554332 1 26765555 2333444444444333 44555666655544
No 186
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.76 E-value=3.1e+02 Score=24.59 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 028702 181 TIIVSISGTV 190 (205)
Q Consensus 181 tlls~iGatl 190 (205)
.++.++++.|
T Consensus 182 ~ly~~ia~~i 191 (230)
T PF03904_consen 182 HLYKAIASKI 191 (230)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 187
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=23.72 E-value=99 Score=29.63 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=8.4
Q ss_pred CcCChhhHHHHHHHHHHHH
Q 028702 94 LEGDTAVKGSILAGVLLLV 112 (205)
Q Consensus 94 ~~~~~a~r~~iLa~vlll~ 112 (205)
|+....-.-..++.+..++
T Consensus 354 e~~~~~y~y~~FH~vf~la 372 (429)
T PF03348_consen 354 EEDGVSYSYSFFHFVFALA 372 (429)
T ss_pred cccCCcccHHHHHHHHHHH
Confidence 3334444444555444433
No 188
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.39 E-value=1.6e+02 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHHHh--cCChHHHHHHHHhhhhhHHHHHH
Q 028702 143 GPAGYALFVAVYAGLEIL--AIPAIPLTMSAGLLFGSVTGTII 183 (205)
Q Consensus 143 G~~gpl~filiy~l~~vl--~iP~~~LtlaaG~LFG~~~Gtll 183 (205)
+|+...+|++..++..++ .+...++.+.-|+++|....+++
T Consensus 28 ~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~v 70 (224)
T PF13829_consen 28 PWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIV 70 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 444445555554444432 23355666666777776665544
No 189
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=23.36 E-value=1e+02 Score=26.03 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=12.4
Q ss_pred HHHHHHhcCChHHHHHHHHhhhh
Q 028702 154 YAGLEILAIPAIPLTMSAGLLFG 176 (205)
Q Consensus 154 y~l~~vl~iP~~~LtlaaG~LFG 176 (205)
.++.+++++|.++++-.-|+=|.
T Consensus 237 LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 237 LTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHhhCCcc
Confidence 34445555776666665555343
No 190
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=23.09 E-value=4.8e+02 Score=23.53 Aligned_cols=21 Identities=33% Similarity=0.203 Sum_probs=11.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHH
Q 028702 97 DTAVKGSILAGVLLLVVVGGF 117 (205)
Q Consensus 97 ~~a~r~~iLa~vlll~llg~~ 117 (205)
.++..+.-|..+++++.+..+
T Consensus 7 aGA~~Gy~Llw~lll~~~~~~ 27 (358)
T PF01566_consen 7 AGAQYGYSLLWVLLLSNLLKY 27 (358)
T ss_pred hHHHHCHHHHHHHHHHHHHHH
Confidence 455556666666655555544
No 191
>PF10166 DUF2368: Uncharacterised conserved protein (DUF2368); InterPro: IPR019319 This family is conserved from nematodes to humans. The function is not known.
Probab=22.99 E-value=2.4e+02 Score=22.94 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=20.9
Q ss_pred HhcCChHHHHHHHHhhhhhHHHHHHH
Q 028702 159 ILAIPAIPLTMSAGLLFGSVTGTIIV 184 (205)
Q Consensus 159 vl~iP~~~LtlaaG~LFG~~~Gtlls 184 (205)
.+.+|.+|++++.||=|-.-.|.-+-
T Consensus 75 ~~l~PlvPL~fv~~Yq~D~ayG~kl~ 100 (131)
T PF10166_consen 75 LFLIPLVPLTFVLGYQYDMAYGTKLQ 100 (131)
T ss_pred chhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 45799999999999888777776554
No 192
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=22.73 E-value=56 Score=30.73 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=4.4
Q ss_pred hhhhhhcccc
Q 028702 48 TKKQNTLQKS 57 (205)
Q Consensus 48 ~~~~~~~~~~ 57 (205)
.+||+.|...
T Consensus 269 HQKQQMiamE 278 (341)
T PF06809_consen 269 HQKQQMIAME 278 (341)
T ss_pred HHHHHHHhhc
Confidence 3444443444
No 193
>PF01944 DUF95: Integral membrane protein DUF95; InterPro: IPR002798 Many members of this family have no known function and are predicted to be integral membrane proteins. Q9V182 from SWISSPROT is annotated as "Stage II sporulation protein M related"; and weakly related to other proteins with similar annotation.
Probab=22.63 E-value=2.3e+02 Score=22.39 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=18.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028702 167 LTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFD 199 (205)
Q Consensus 167 LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLg 199 (205)
+.+++|..||...-..+..=|..+|.+++++..
T Consensus 61 ~~~~~g~~~gi~~~~~l~~nG~~lG~~~~~~~~ 93 (173)
T PF01944_consen 61 LMFLLGITFGIPSIFILFFNGFILGFVIGFLIN 93 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666655555555556666666665443
No 194
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=22.49 E-value=5.8e+02 Score=23.07 Aligned_cols=26 Identities=0% Similarity=-0.086 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 028702 179 TGTIIVSISGTVSGSKCCIFDCPIFR 204 (205)
Q Consensus 179 ~Gtlls~iGatlGA~laFlLgR~lgR 204 (205)
...++..+|..+|...+++-.|.+.|
T Consensus 279 ~~~~l~~~g~~lg~lgs~~s~~r~Lr 304 (309)
T TIGR00439 279 ELGLLLGFCIALGVVGAWLATTQHLL 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999888887665
No 195
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=22.46 E-value=4.9e+02 Score=27.90 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=14.1
Q ss_pred HhcCChHHHHHHHHhhhhhH
Q 028702 159 ILAIPAIPLTMSAGLLFGSV 178 (205)
Q Consensus 159 vl~iP~~~LtlaaG~LFG~~ 178 (205)
++++|..-+.++.||+++++
T Consensus 346 lallp~~g~~vLkgY~~~~i 365 (942)
T PRK13735 346 AAVFNKLTLSVLKGYVFALM 365 (942)
T ss_pred HHHhccchHHHHHHHHHHHH
Confidence 34577766677888888875
No 196
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=22.34 E-value=3e+02 Score=23.52 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=7.4
Q ss_pred HHHHHHHhhCChHH
Q 028702 134 QFSGFIEGYGPAGY 147 (205)
Q Consensus 134 ~L~~~i~~~G~~gp 147 (205)
-+++|+++.-..+-
T Consensus 66 ~vRD~VDsR~~i~e 79 (170)
T PF11241_consen 66 YVRDYVDSRRNIGE 79 (170)
T ss_pred hhhhhhhcccchHH
Confidence 35667775544433
No 197
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=22.33 E-value=1.6e+02 Score=28.83 Aligned_cols=9 Identities=11% Similarity=-0.027 Sum_probs=4.6
Q ss_pred cCChhhHHH
Q 028702 95 EGDTAVKGS 103 (205)
Q Consensus 95 ~~~~a~r~~ 103 (205)
+.++-||+.
T Consensus 263 ~~~~lR~~~ 271 (485)
T KOG0569|consen 263 KNPTLRRPL 271 (485)
T ss_pred cCcchhHHH
Confidence 444555553
No 198
>COG1288 Predicted membrane protein [Function unknown]
Probab=22.26 E-value=6.8e+02 Score=24.86 Aligned_cols=17 Identities=18% Similarity=-0.168 Sum_probs=9.1
Q ss_pred CcCChhhHHHHHHHHHH
Q 028702 94 LEGDTAVKGSILAGVLL 110 (205)
Q Consensus 94 ~~~~~a~r~~iLa~vll 110 (205)
++.=+++++.+|..+.+
T Consensus 268 ~~~Ft~~~klvL~lf~l 284 (481)
T COG1288 268 ERPFTFRDKLVLLLFTL 284 (481)
T ss_pred ccccchhhhHHHHHHHH
Confidence 34455666666654443
No 199
>PF14007 YtpI: YtpI-like protein
Probab=22.19 E-value=3.5e+02 Score=20.69 Aligned_cols=41 Identities=7% Similarity=0.191 Sum_probs=26.2
Q ss_pred HHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhh
Q 028702 135 FSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFG 176 (205)
Q Consensus 135 L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG 176 (205)
-+.|.++---.+.-.|+..+.+-+.+..+ +.+++.-|.+|-
T Consensus 27 ~k~~~~aka~ialG~fl~~fgiNQ~~~~~-st~~~iV~~ifl 67 (89)
T PF14007_consen 27 EKKWYSAKANIALGIFLILFGINQMFLFG-STVRLIVGAIFL 67 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHH
Confidence 35666766666777888888887777644 334444455553
No 200
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=22.16 E-value=3.7e+02 Score=24.98 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhhhH--HHHHHH
Q 028702 165 IPLTMSAGLLFGSV--TGTIIV 184 (205)
Q Consensus 165 ~~LtlaaG~LFG~~--~Gtlls 184 (205)
.+=.+..|+.||++ .|+.|+
T Consensus 148 gLGEi~~~vffG~l~v~g~~yi 169 (303)
T COG1575 148 GLGEIFVGVFFGPLIVLGAYYI 169 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 44457778888863 455443
No 201
>COG3817 Predicted membrane protein [Function unknown]
Probab=22.11 E-value=2.1e+02 Score=26.59 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=29.9
Q ss_pred hCChHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHhh
Q 028702 142 YGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVS-ISGTVSGSKCCIFDC 200 (205)
Q Consensus 142 ~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gtlls~-iGatlGA~laFlLgR 200 (205)
+..+-|+..+-+-++...+.+|-... |++-..++.++ +|+.++..++.++-|
T Consensus 95 nrlfiPal~ip~~tlig~~lf~~~s~-------~~pknatl~al~i~~i~a~vla~~mt~ 147 (313)
T COG3817 95 NRLFIPALLIPVLTLIGSLLFPDLSF-------FDPKNATLMALGIAAIVATVLACVMTK 147 (313)
T ss_pred CEeehHHHHHHHHHHHHHHHhccccc-------cCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 44567777777777766677773222 66666655543 355555555544433
No 202
>PRK09546 zntB zinc transporter; Reviewed
Probab=22.04 E-value=1.4e+02 Score=26.69 Aligned_cols=47 Identities=17% Similarity=0.058 Sum_probs=25.2
Q ss_pred HHHHHHhcCChHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHhh
Q 028702 154 YAGLEILAIPAIPLTMSAGLLFG------SVTGTIIVSISGTVSGSKCCIFDC 200 (205)
Q Consensus 154 y~l~~vl~iP~~~LtlaaG~LFG------~~~Gtlls~iGatlGA~laFlLgR 200 (205)
..+.+++++|.++++-.=|+=|+ .-.|..++++..++-+++.+++-|
T Consensus 267 Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fk 319 (324)
T PRK09546 267 MSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLK 319 (324)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 33444556665555555555554 124676666655555555555544
No 203
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=21.90 E-value=2.4e+02 Score=25.68 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=32.4
Q ss_pred HHHHHHhcCC--hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028702 154 YAGLEILAIP--AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFD 199 (205)
Q Consensus 154 y~l~~vl~iP--~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLg 199 (205)
.-+.++++.+ ..=+.+..|++.......+++++|+.+|..++.+++
T Consensus 169 ~g~gQV~f~~~~~~G~lil~gi~i~S~~~a~~al~Gs~lg~~~~~~lg 216 (301)
T PF03253_consen 169 KGFGQVFFQDNVVSGLLILIGILIASRIAALYALLGSLLGTLVALLLG 216 (301)
T ss_dssp HHHHHCCT---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcHHHHHcCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445666777 344566777888888999999999999998887665
No 204
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=21.87 E-value=1.7e+02 Score=28.66 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 028702 177 SVTGTIIVSI 186 (205)
Q Consensus 177 ~~~Gtlls~i 186 (205)
.+.|+.++++
T Consensus 455 ~i~~fAitl~ 464 (498)
T PRK05812 455 PVKGFAVTLG 464 (498)
T ss_pred chhHHHHHHH
Confidence 4455554443
No 205
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=21.74 E-value=1.4e+02 Score=21.91 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=15.4
Q ss_pred HHHHHHHhhCChHHH-HHHHHHHH
Q 028702 134 QFSGFIEGYGPAGYA-LFVAVYAG 156 (205)
Q Consensus 134 ~L~~~i~~~G~~gpl-~filiy~l 156 (205)
.+...+.+.|+|+.+ +++++|++
T Consensus 4 ei~k~~~sQG~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 4 EIIKLALSQGIFAVLFVWLLFYVL 27 (71)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 455667788998876 55555554
No 206
>PRK13747 putative mercury resistance protein; Provisional
Probab=21.61 E-value=3.5e+02 Score=20.44 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
++..+.||-.-|.+.|--..+++.+++....|.+.|.+
T Consensus 34 iLa~lLAGTa~Gafl~e~w~iaal~lt~LFvlsl~~~l 71 (78)
T PRK13747 34 ILAAVLAGTTAGAFLGEHWGIAALTLTGLFVLSVTRLL 71 (78)
T ss_pred HHHHHHccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55677778777888888888888888888888887754
No 207
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=21.59 E-value=6.7e+02 Score=23.45 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhCChH
Q 028702 129 NAFLTQFSGFIEGYGPAG 146 (205)
Q Consensus 129 ~~~l~~L~~~i~~~G~~g 146 (205)
++..+++.+.+++.+...
T Consensus 240 ~~~~~~~~~~~~~~a~~~ 257 (388)
T TIGR00771 240 ISPVKITEEFFNGMGNSF 257 (388)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455556555555433
No 208
>PRK10527 hypothetical protein; Provisional
Probab=21.56 E-value=1.2e+02 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=18.1
Q ss_pred HHHHHHHHHh-cCChHHHHHHHHhhh
Q 028702 151 VAVYAGLEIL-AIPAIPLTMSAGLLF 175 (205)
Q Consensus 151 iliy~l~~vl-~iP~~~LtlaaG~LF 175 (205)
+++=++..++ .+|++++-++|.+.|
T Consensus 14 ~~LG~iGi~LPlLPTTPFlLLAa~cf 39 (125)
T PRK10527 14 VVLGTLGVVLPLLPTTPFILLAAWCF 39 (125)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 3444444555 489999999999988
No 209
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=21.41 E-value=3.8e+02 Score=20.48 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHH-Hh-cCC-hHHHHHHHHhhhh
Q 028702 144 PAGYALFVAVYAGLE-IL-AIP-AIPLTMSAGLLFG 176 (205)
Q Consensus 144 ~~gpl~filiy~l~~-vl-~iP-~~~LtlaaG~LFG 176 (205)
.....+.+++|++.. .+ +++ +.++..+...++|
T Consensus 75 ~~~~~~~~~~y~~~~~~lGf~~at~~~~~~~~~~~g 110 (141)
T PF07331_consen 75 VLLVLGLLVLYVLLLEYLGFIIATFLFLFAFMLLLG 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 444555556666643 22 355 4444555555666
No 210
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=21.34 E-value=4.3e+02 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHH
Q 028702 148 ALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGT 181 (205)
Q Consensus 148 l~filiy~l~~vl~iP~~~LtlaaG~LFG~~~Gt 181 (205)
+.|++...+..+.+=|...+.+..|+-.|...|.
T Consensus 7 l~~~~~~~~~~~~PGP~~~~v~~~~~~~G~~~g~ 40 (208)
T COG1280 7 LAFLLAALVLAATPGPDNLLVLARSLSRGRRAGL 40 (208)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHhcHHHHH
Confidence 3455555555555455677777777777655553
No 211
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.28 E-value=2.8e+02 Score=18.94 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 174 LFGSVTGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 174 LFG~~~Gtlls~iGatlGA~laFlLgR~l 202 (205)
.||+|. ++++.+-+.+| |.+|+++
T Consensus 26 ~~GF~~-tl~i~~~~~iG----~~iG~~~ 49 (51)
T PF10031_consen 26 TFGFWK-TLFILLFAAIG----YYIGKYL 49 (51)
T ss_pred HHHHHH-HHHHHHHHHHH----HHHHHHh
Confidence 455543 34444444444 4444443
No 212
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=21.27 E-value=7.5e+02 Score=23.89 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhCChHHHHH----------HHHHHHHHHh-cCChHHHHHHHHhh
Q 028702 131 FLTQFSGFIEGYGPAGYALF----------VAVYAGLEIL-AIPAIPLTMSAGLL 174 (205)
Q Consensus 131 ~l~~L~~~i~~~G~~gpl~f----------iliy~l~~vl-~iP~~~LtlaaG~L 174 (205)
..+.+..|+--+|.+..+.- +..++++.+. ..|.......||++
T Consensus 275 l~~~~~~W~l~ng~lsa~g~~lA~gHplsilvaf~~Apitsl~p~~a~G~faglv 329 (388)
T COG1916 275 LLDALLQWFLFNGVLSALGALLAGGHPLSILVAFLVAPITSLNPLIAVGWFAGLV 329 (388)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCCCchHHHHHHHhcchhhcccchhhHHHHHHH
Confidence 34556667665665443322 2233333333 24555555555644
No 213
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=21.21 E-value=4.7e+02 Score=21.91 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHhcC-C------hHHHHHHHHhhh----------------hhHHHHHHHHHHHHH
Q 028702 134 QFSGFIEGYGPAGYALFVAVYAGLEILAI-P------AIPLTMSAGLLF----------------GSVTGTIIVSISGTV 190 (205)
Q Consensus 134 ~L~~~i~~~G~~gpl~filiy~l~~vl~i-P------~~~LtlaaG~LF----------------G~~~Gtlls~iGatl 190 (205)
+.+|.+. -|.+..+.+++.++......+ | ..+-++.+|.+| |.+.|.++...|...
T Consensus 1 k~KDlI~-igif~al~~vv~~v~~~~~~~~p~~~~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G~~~ 79 (186)
T PF09605_consen 1 KVKDLIT-IGIFTALYFVVMFVVGMIGGFSPIFMLFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMGHGW 79 (186)
T ss_pred ChhHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHh
Q 028702 191 SGSKCCIFD 199 (205)
Q Consensus 191 GA~laFlLg 199 (205)
-..+.++++
T Consensus 80 ~~~~~~iv~ 88 (186)
T PF09605_consen 80 PMLIVCIVG 88 (186)
T ss_pred HHHHHHHHH
No 214
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=21.16 E-value=1.2e+02 Score=27.29 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=34.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhhhH------HHHHHHHHHHHHHHHHHHHHhhhc
Q 028702 153 VYAGLEILAIPAIPLTMSAGLLFGSV------TGTIIVSISGTVSGSKCCIFDCPI 202 (205)
Q Consensus 153 iy~l~~vl~iP~~~LtlaaG~LFG~~------~Gtlls~iGatlGA~laFlLgR~l 202 (205)
+.++.+++++|-++++-.=|+=|+.. .|..++++...+-+.+.++.-|+-
T Consensus 264 ~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frrk 319 (322)
T COG0598 264 ILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRRK 319 (322)
T ss_pred HHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566788777777777777643 377777777777777777776653
No 215
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=21.14 E-value=1.9e+02 Score=22.11 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=5.7
Q ss_pred cCCCchhhh
Q 028702 40 KPCSSLKQT 48 (205)
Q Consensus 40 ~~~~~~~~~ 48 (205)
.|+.++-..
T Consensus 28 ~PlP~id~~ 36 (87)
T PF15017_consen 28 NPLPDIDLE 36 (87)
T ss_pred CCCCCCCHH
Confidence 577777543
No 216
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.07 E-value=1.5e+02 Score=27.25 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=30.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHhhh
Q 028702 153 VYAGLEILAIPAIPLTMSAGLLFG------SVTGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 153 iy~l~~vl~iP~~~LtlaaG~LFG------~~~Gtlls~iGatlGA~laFlLgR~ 201 (205)
+.++.+++++|-++++-.-|+=|. .-.|..++++...+.+.+.++.-|+
T Consensus 258 ~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 258 IFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKR 312 (316)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566776666666666664 1257777777777766666665553
No 217
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.00 E-value=1.3e+02 Score=21.12 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 028702 184 VSISGTVSGSKCC 196 (205)
Q Consensus 184 s~iGatlGA~laF 196 (205)
+.++++.|++++|
T Consensus 14 ~t~aa~a~av~~~ 26 (54)
T PF11240_consen 14 ATLAAIAGAVFTF 26 (54)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555655554
No 218
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=20.97 E-value=1e+02 Score=26.12 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028702 179 TGTIIVSISGTVSGSKCCIF 198 (205)
Q Consensus 179 ~Gtlls~iGatlGA~laFlL 198 (205)
.|++-+++-+++||+-+|+.
T Consensus 118 aGIvsav~valvGAvsSyia 137 (169)
T PF12301_consen 118 AGIVSAVVVALVGAVSSYIA 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33344444555666666654
No 219
>PRK04897 heat shock protein HtpX; Provisional
Probab=20.82 E-value=3.7e+02 Score=24.12 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 028702 179 TGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 179 ~Gtlls~iGatlGA~laFlLgR~ 201 (205)
.|.+++++.+.+...+.|+.+.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~ 63 (298)
T PRK04897 41 GGLIIALIIGVIYALIMIFQSTN 63 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHH
Confidence 45555555556666666666543
No 220
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=20.82 E-value=4.2e+02 Score=20.81 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH------HHhhhhcHHHHHHHHHHHHH
Q 028702 98 TAVKGSILAGVLLLVVVGGF------GTMGYVYKDQINAFLTQFSG 137 (205)
Q Consensus 98 ~a~r~~iLa~vlll~llg~~------~l~~~l~~~~i~~~l~~L~~ 137 (205)
-..++.+..++++..+.+.+ ....+++++..++..+...+
T Consensus 61 isf~~a~~~g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~~~~~ 106 (163)
T PF13858_consen 61 ISFGQAFKVGFLISLIAGLISAVFQYIYFNYIDPDFFENYIEAQIE 106 (163)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 34455544444433333322 33445566665555544433
No 221
>COG2891 MreD Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=20.65 E-value=2.8e+02 Score=23.41 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 028702 151 VAVYAGLEILAIP---AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 151 iliy~l~~vl~iP---~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~ 201 (205)
.+++.+......| ++..+..-|++|....|.++-.=+...+ .++|++++.
T Consensus 39 lllvL~~w~i~~~~~v~i~~afvlGll~D~~~~sllGv~al~f~-li~ylv~~~ 91 (167)
T COG2891 39 LLLVLLYWVIALPHRVGIGYAFVLGLLYDVYYGSLLGVHALGFS-LIGYLVAKL 91 (167)
T ss_pred HHHHHHHHHHHcCchhhhHHHHHHHHHHHHHccchHHHHHHHHH-HHHHHHHHH
Confidence 4444445556677 5667777777776666655554443333 556666654
No 222
>PRK10958 leucine export protein LeuE; Provisional
Probab=20.64 E-value=4.2e+02 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=10.7
Q ss_pred cCChHHHHHHHHhhhhhHHHH
Q 028702 161 AIPAIPLTMSAGLLFGSVTGT 181 (205)
Q Consensus 161 ~iP~~~LtlaaG~LFG~~~Gt 181 (205)
+=|...+.+..|.-.|.-.|.
T Consensus 24 PGP~~~~v~~~~~~~G~r~~~ 44 (212)
T PRK10958 24 PGPNSLYVLSTAARRGVKAGY 44 (212)
T ss_pred CchHHHHHHHHHHhhCHHHHH
Confidence 334555555556555544443
No 223
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=20.63 E-value=6.6e+02 Score=25.44 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 028702 186 ISGTVSGSKCCIFDCP 201 (205)
Q Consensus 186 iGatlGA~laFlLgR~ 201 (205)
..+++|++++|+++..
T Consensus 118 ~~~~~~~~~~~~~~~~ 133 (641)
T PRK13822 118 PATVIGAVVGFFAGAF 133 (641)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5677777777777654
No 224
>PRK11281 hypothetical protein; Provisional
Probab=20.46 E-value=6.8e+02 Score=27.31 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=12.2
Q ss_pred hcCChHHHHHHHHhhhhh
Q 028702 160 LAIPAIPLTMSAGLLFGS 177 (205)
Q Consensus 160 l~iP~~~LtlaaG~LFG~ 177 (205)
.++|..++-+++|+.+.+
T Consensus 552 ~alp~~l~~~~~g~~~~~ 569 (1113)
T PRK11281 552 LALPVTLIFLAVGLILLT 569 (1113)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457877777777776654
No 225
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=20.46 E-value=5.6e+02 Score=22.06 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=16.3
Q ss_pred HHhhCC-hHHHHHHHHHHHHHHhcCCh
Q 028702 139 IEGYGP-AGYALFVAVYAGLEILAIPA 164 (205)
Q Consensus 139 i~~~G~-~gpl~filiy~l~~vl~iP~ 164 (205)
.++++. ++-..|.....+....++|.
T Consensus 87 ~e~~~~~~g~~~~~~~~~i~~~~lf~~ 113 (216)
T COG0170 87 REKNGPGLGGIIYFIGGGLLASLLFPI 113 (216)
T ss_pred HHhcCCCcCcHHHHHHHHHHHHHHccH
Confidence 345554 56666777777777666664
No 226
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=20.31 E-value=56 Score=26.46 Aligned_cols=15 Identities=27% Similarity=0.269 Sum_probs=9.6
Q ss_pred ccccccCCCCCCCch
Q 028702 64 SLGWFFNPKGDDDDN 78 (205)
Q Consensus 64 ~~~~~~~~~~~~~~~ 78 (205)
+|+-++-+-++|++.
T Consensus 106 rLk~LG~eVSddE~~ 120 (136)
T PF04871_consen 106 RLKELGEEVSDDEDS 120 (136)
T ss_pred HHHHcCCCccCCccc
Confidence 567777777666533
No 227
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=20.31 E-value=3.8e+02 Score=20.11 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 028702 165 IPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFDCP 201 (205)
Q Consensus 165 ~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLgR~ 201 (205)
+...+.+|-..|.+.|--..++..+++....+.+.|-
T Consensus 34 il~~vLaGTaaGafl~e~w~iaal~l~~LF~lsl~~~ 70 (75)
T PF05052_consen 34 ILAPVLAGTAAGAFLGEHWVIAALTLTGLFVLSLTRA 70 (75)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344788888888888888888888887777666654
No 228
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.19 E-value=3.8e+02 Score=23.25 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 028702 176 GSVTGTIIVSISGTVSGSKCC 196 (205)
Q Consensus 176 G~~~Gtlls~iGatlGA~laF 196 (205)
|-+.+....+++.+++..+++
T Consensus 216 g~l~~~~~~~~~~~~s~~lsl 236 (248)
T PF07787_consen 216 GNLVGFGLFLVAFIISFSLSL 236 (248)
T ss_pred echhhhHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 229
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=20.18 E-value=3.2e+02 Score=27.72 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=11.5
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHhh
Q 028702 176 GSVTGTIIVSI-SGTVSGSKCCIFDC 200 (205)
Q Consensus 176 G~~~Gtlls~i-GatlGA~laFlLgR 200 (205)
|++.|+.++++ |..++...+.++.|
T Consensus 562 g~ikgFAvTL~iGIl~S~ftAi~vtr 587 (604)
T PRK12933 562 GPIQGFALTLGLGLLTSMFTGIFASR 587 (604)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555443 33333334444444
Done!