Query 028702
Match_columns 205
No_of_seqs 171 out of 1067
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 02:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ezc_A UREA transporter 1; mem 68.4 16 0.00053 33.4 7.8 69 131-199 36-106 (384)
2 3p5n_A RIBU, riboflavin uptake 64.8 9.6 0.00033 30.7 5.1 26 166-191 49-74 (189)
3 4ain_A Glycine betaine transpo 53.5 10 0.00035 36.1 3.9 41 117-157 33-73 (539)
4 3p5n_A RIBU, riboflavin uptake 50.5 68 0.0023 25.6 7.9 42 142-183 58-103 (189)
5 3k3f_A UREA transporter; membr 32.6 54 0.0019 29.2 5.0 48 152-199 21-70 (340)
6 3odu_A C-X-C chemokine recepto 32.3 1.4E+02 0.0048 25.4 7.5 18 161-178 100-117 (502)
7 4dve_A Biotin transporter BIOY 32.3 56 0.0019 27.0 4.7 58 142-199 62-147 (198)
8 1p58_D Envelope protein M; fla 31.6 43 0.0015 23.8 3.4 36 122-157 19-54 (75)
9 3j27_B Matrix protein, small e 29.0 63 0.0022 22.9 3.9 35 122-156 19-53 (75)
10 2vof_A BCL-2-related protein A 27.4 1.8E+02 0.006 22.6 6.7 52 99-150 89-152 (157)
11 3bbn_U Ribosomal protein S21; 26.3 26 0.0009 29.2 1.7 12 34-45 129-140 (190)
12 2wsw_A BCCT family betaine/car 24.8 2.6E+02 0.0087 26.3 8.3 40 118-157 31-70 (509)
13 3v5u_A Uncharacterized membran 22.2 3.8E+02 0.013 23.1 9.9 42 150-191 199-246 (320)
14 4fp9_B Mterf domain-containing 21.0 21 0.0007 31.7 0.0 6 42-47 261-266 (335)
15 4ezc_A UREA transporter 1; mem 20.3 1.6E+02 0.0055 26.7 5.8 45 155-199 224-270 (384)
No 1
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=68.37 E-value=16 Score=33.41 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHhcCC--hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028702 131 FLTQFSGFIEGYGPAGYALFVAVYAGLEILAIP--AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFD 199 (205)
Q Consensus 131 ~l~~L~~~i~~~G~~gpl~filiy~l~~vl~iP--~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLg 199 (205)
++.++.+|+++....--.+=.++--+.++++.. .+=+.+..|+.++-++-.+..++|+.+|...+.+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~allG~~vstltA~llg 106 (384)
T 4ezc_A 36 DMKEFANWLKDKPQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLS 106 (384)
T ss_dssp TCHHHHHHHHTSCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHhcCCcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 456688899987644444444455556777777 444556667777766666777777777766665543
No 2
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=64.83 E-value=9.6 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=13.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Q 028702 166 PLTMSAGLLFGSVTGTIIVSISGTVS 191 (205)
Q Consensus 166 ~LtlaaG~LFG~~~Gtlls~iGatlG 191 (205)
+..+.+|++||++.|.+...++..++
T Consensus 49 i~i~l~~~~~Gp~~g~~~~~l~~ll~ 74 (189)
T 3p5n_A 49 VPSLLATFTFGPVAGIIVALVKNLLN 74 (189)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455555555555555544444443
No 3
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=53.47 E-value=10 Score=36.12 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 028702 117 FGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGL 157 (205)
Q Consensus 117 ~~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~ 157 (205)
+.++..+.++...+..+.+.+|+-++--|-+.+.+.++++.
T Consensus 33 ~v~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~f 73 (539)
T 4ain_A 33 TVVWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFF 73 (539)
T ss_dssp HHHHHHTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445667888888889999999866555555444444443
No 4
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=50.50 E-value=68 Score=25.57 Aligned_cols=42 Identities=21% Similarity=0.118 Sum_probs=26.1
Q ss_pred hCChHHHHHHHHHHHHHHhc----CChHHHHHHHHhhhhhHHHHHH
Q 028702 142 YGPAGYALFVAVYAGLEILA----IPAIPLTMSAGLLFGSVTGTII 183 (205)
Q Consensus 142 ~G~~gpl~filiy~l~~vl~----iP~~~LtlaaG~LFG~~~Gtll 183 (205)
+|++.-.+..+++.+...+. .++.+.++.++.+||...|.++
T Consensus 58 ~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~~g~~~~~~y 103 (189)
T 3p5n_A 58 FGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIY 103 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 46654444444444443321 3578888999999997777654
No 5
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=32.59 E-value=54 Score=29.22 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCC--hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028702 152 AVYAGLEILAIP--AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFD 199 (205)
Q Consensus 152 liy~l~~vl~iP--~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLg 199 (205)
++--+.++++.+ .+=+.+..|+..+.++-.+..++|+.+|...+.+++
T Consensus 21 ~LrG~~QV~f~~n~lsGllil~gi~~~s~~~a~~allG~~~stltA~llg 70 (340)
T 3k3f_A 21 VCRGCGQVMFQNNTVTGLLFFAGIFYNSTTLGVCAVLGTAASTLTAQLLG 70 (340)
T ss_dssp HHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCeeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455666666 444556667777766555666667666666665543
No 6
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=32.33 E-value=1.4e+02 Score=25.36 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=7.8
Q ss_pred cCChHHHHHHHHhhhhhH
Q 028702 161 AIPAIPLTMSAGLLFGSV 178 (205)
Q Consensus 161 ~iP~~~LtlaaG~LFG~~ 178 (205)
.+|..+.....+..||.+
T Consensus 100 ~~p~~~~~~~~~~~~~~~ 117 (502)
T 3odu_A 100 TLPFWAVDAVANWYFGNF 117 (502)
T ss_dssp THHHHHHHHHTCCCSHHH
T ss_pred HHHHHHHHHhcCCcCCch
Confidence 344444444444444443
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=32.33 E-value=56 Score=26.98 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred hCChHHHHHHHHHHHHHHhcCC---------hHHHHHHHHhhhhhHHHHHHH-------------------HHHHHHHHH
Q 028702 142 YGPAGYALFVAVYAGLEILAIP---------AIPLTMSAGLLFGSVTGTIIV-------------------SISGTVSGS 193 (205)
Q Consensus 142 ~G~~gpl~filiy~l~~vl~iP---------~~~LtlaaG~LFG~~~Gtlls-------------------~iGatlGA~ 193 (205)
.|+.--.+-+++|.+...+.+| +.++.-.+||++|+..+..++ .++..+|..
T Consensus 62 LG~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA~v~G~l~~~~~~~~~~~~~~~~~~~~l~G~~ 141 (198)
T 4dve_A 62 LGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVI 141 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHHHHHHHHHHHTTGGGSSCHHHHHHHHHHHHTH
T ss_pred HChhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHH
Q ss_pred HHHHHh
Q 028702 194 KCCIFD 199 (205)
Q Consensus 194 laFlLg 199 (205)
+.|.+|
T Consensus 142 ~iy~~G 147 (198)
T 4dve_A 142 FVDFVG 147 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 8
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=31.63 E-value=43 Score=23.83 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=28.2
Q ss_pred hhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 028702 122 YVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGL 157 (205)
Q Consensus 122 ~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~ 157 (205)
|...+...+.+.+++.|+-.|..++.++-++.|.+.
T Consensus 19 Wl~~~~~~~~l~kvE~WilrNp~~al~a~~~~w~lG 54 (75)
T 1p58_D 19 WMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIG 54 (75)
T ss_pred ccCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHHc
Confidence 566777888999999999999877776666666554
No 9
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=29.03 E-value=63 Score=22.91 Aligned_cols=35 Identities=6% Similarity=-0.025 Sum_probs=27.7
Q ss_pred hhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Q 028702 122 YVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAG 156 (205)
Q Consensus 122 ~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l 156 (205)
|...+...+.+.+++.|+-.|..++.++-++.+.+
T Consensus 19 Wl~~~~~~~~l~rvE~WilrNp~~al~~~~~~w~l 53 (75)
T 3j27_B 19 WMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTI 53 (75)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHS
T ss_pred CcCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 56667788899999999999998887766666643
No 10
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=27.43 E-value=1.8e+02 Score=22.59 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhc-----HHHHH----HH-HHHHHHHHHhhCCh--HHHHH
Q 028702 99 AVKGSILAGVLLLVVVGGFGTMGYVY-----KDQIN----AF-LTQFSGFIEGYGPA--GYALF 150 (205)
Q Consensus 99 a~r~~iLa~vlll~llg~~~l~~~l~-----~~~i~----~~-l~~L~~~i~~~G~~--gpl~f 150 (205)
.-|+.+.+.+...+.++.-..-.-.. .+.|. ++ .+.+..||+++|-| |.+-|
T Consensus 89 inWGRIVal~~F~g~la~~~~~~~~~~~~e~~~~i~~~~~~yl~~~~~~WI~~~GGW~dgf~~~ 152 (157)
T 2vof_A 89 INWGRIVTIFAFGGVLLKKLKQEQIALDVSAYKQVSSFVAEFIMNNTGEWIRQNGGWEDGFIKK 152 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 56888776655555554322111000 11222 22 24589999999887 55443
No 11
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.30 E-value=26 Score=29.24 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=8.8
Q ss_pred cccccccCCCch
Q 028702 34 RRFHFVKPCSSL 45 (205)
Q Consensus 34 ~~~~~~~~~~~~ 45 (205)
||.||-+|+---
T Consensus 129 rRr~YEKPSeKR 140 (190)
T 3bbn_U 129 RRRFFENTQDVR 140 (190)
T ss_dssp SCCCTTTTTTHH
T ss_pred HHHhccCHHHHH
Confidence 567999998433
No 12
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=24.81 E-value=2.6e+02 Score=26.32 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=26.8
Q ss_pred HHhhhhcHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Q 028702 118 GTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAGL 157 (205)
Q Consensus 118 ~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~filiy~l~ 157 (205)
.++....+|+..+..+.+.+|+.++--|-+.+.+.++++.
T Consensus 31 v~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~f 70 (509)
T 2wsw_A 31 CWLTVRDLDASNEVINAVFSYVTNVWGWAFEWYMVIMFGG 70 (509)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444667888888899999999866555555544444443
No 13
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=22.22 E-value=3.8e+02 Score=23.14 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH------hhhhhHHHHHHHHHHHHHH
Q 028702 150 FVAVYAGLEILAIPAIPLTMSAG------LLFGSVTGTIIVSISGTVS 191 (205)
Q Consensus 150 filiy~l~~vl~iP~~~LtlaaG------~LFG~~~Gtlls~iGatlG 191 (205)
++.+.+++....+|=.+.++.+. ...|-..|.-+.-+..++|
T Consensus 199 ~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g 246 (320)
T 3v5u_A 199 VIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALA 246 (320)
T ss_dssp HHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 34444444455566333333322 4455555554444444444
No 14
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=20.95 E-value=21 Score=31.66 Aligned_cols=6 Identities=33% Similarity=1.104 Sum_probs=2.4
Q ss_pred CCchhh
Q 028702 42 CSSLKQ 47 (205)
Q Consensus 42 ~~~~~~ 47 (205)
++|+.+
T Consensus 261 ~~s~ee 266 (335)
T 4fp9_B 261 CTSVEE 266 (335)
T ss_dssp CCCHHH
T ss_pred hcCHHH
Confidence 344433
No 15
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=20.27 E-value=1.6e+02 Score=26.71 Aligned_cols=45 Identities=9% Similarity=-0.077 Sum_probs=32.0
Q ss_pred HHHHHhcCC--hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 028702 155 AGLEILAIP--AIPLTMSAGLLFGSVTGTIIVSISGTVSGSKCCIFD 199 (205)
Q Consensus 155 ~l~~vl~iP--~~~LtlaaG~LFG~~~Gtlls~iGatlGA~laFlLg 199 (205)
-+.++++.+ ..=+.+..|+....+...+++++|+.+|...+..++
T Consensus 224 g~gQV~f~~n~~tG~lil~gi~i~S~~~al~Al~Gs~~g~~~a~~lg 270 (384)
T 4ezc_A 224 GVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIIAGLSLS 270 (384)
T ss_dssp HHHGGGTCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHhcCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566666 344556677777888888888888888888776654
Done!