Query 028702
Match_columns 205
No_of_seqs 171 out of 1067
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 02:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028702.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028702hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 61.2 5.9 0.00043 22.7 3.9 25 176-200 3-28 (34)
2 d1kqfc_ f.21.1.1 (C:) Formate 35.8 34 0.0025 25.2 5.9 40 133-173 147-186 (216)
3 d1x3ca1 g.37.1.1 (A:8-68) Zinc 35.7 11 0.00076 24.2 2.3 22 15-37 4-25 (61)
4 d1a87a_ f.1.1.1 (A:) Colicin N 31.1 38 0.0028 27.9 5.7 44 131-174 227-272 (297)
5 d1rh1a2 f.1.1.1 (A:313-511) Co 29.4 43 0.0031 26.1 5.6 50 127-176 127-179 (199)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 28.5 50 0.0036 21.8 5.3 18 105-122 7-24 (158)
7 d1cola_ f.1.1.1 (A:) Colicin A 26.0 73 0.0053 24.7 6.3 42 130-171 128-172 (197)
8 d2vv5a3 f.34.1.1 (A:27-112) Me 17.2 1.2E+02 0.0087 19.1 7.3 30 151-181 54-83 (86)
9 d2jm6b1 f.1.4.1 (B:147-308) EA 17.1 1.7E+02 0.012 20.8 6.5 46 100-146 95-148 (162)
10 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 11.8 2.5E+02 0.018 20.1 6.6 54 96-149 96-156 (164)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=61.16 E-value=5.9 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHhh
Q 028702 176 GSVTGTIIVSISGT-VSGSKCCIFDC 200 (205)
Q Consensus 176 G~~~Gtlls~iGat-lGA~laFlLgR 200 (205)
|++.|+.+.++|.+ +|-.+.|.+-|
T Consensus 3 ~fiagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 3 EFIAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecchhHHHHHHHHHHHHHHHhhee
Confidence 56778888888865 46677787766
No 2
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=35.81 E-value=34 Score=25.25 Aligned_cols=40 Identities=10% Similarity=-0.011 Sum_probs=27.2
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHhcCChHHHHHHHHh
Q 028702 133 TQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGL 173 (205)
Q Consensus 133 ~~L~~~i~~~G~~gpl~filiy~l~~vl~iP~~~LtlaaG~ 173 (205)
.++...+...+.+..++|+++.+...+ ..|..+=++..|.
T Consensus 147 ~~~~~~iH~~~~~l~~~~vi~Hvy~a~-~~~~~l~~M~tG~ 186 (216)
T d1kqfc_ 147 VRYSLLIHAAAGIILIHAILIHMYMAF-WVKGSIKGMIEGK 186 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HBTTHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-ccccccchhheee
Confidence 344556777778888888888887764 3565555666664
No 3
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.66 E-value=11 Score=24.21 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=13.5
Q ss_pred CCccccCCCCCCCCCcccccccc
Q 028702 15 PPSCFLTSSNSFIHSFKPHRRFH 37 (205)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (205)
|+..++--|+ .-++|||||+.|
T Consensus 4 pv~~~~e~pt-~~spyrpyrcvh 25 (61)
T d1x3ca1 4 PVSQSLEFPT-RYSPYRPYRCVH 25 (61)
T ss_dssp CCCCCCCCSS-SSCSSCSCBCCS
T ss_pred ccchhhcCcc-ccCCCCceeeec
Confidence 4444443333 445699999986
No 4
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=31.06 E-value=38 Score=27.93 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHH--HhcCChHHHHHHHHhh
Q 028702 131 FLTQFSGFIEGYGPAGYALFVAVYAGLE--ILAIPAIPLTMSAGLL 174 (205)
Q Consensus 131 ~l~~L~~~i~~~G~~gpl~filiy~l~~--vl~iP~~~LtlaaG~L 174 (205)
++-++..|+-+.+.-+.++++..+++.. .+.+|.+++.+++-++
T Consensus 227 L~vklEslaag~~As~vva~~FS~il~~la~tglpvtilG~agImi 272 (297)
T d1a87a_ 227 LLLEVESWIIGGVVAGVAISLFGAVLSFLPISGLAVTALGVIGIMT 272 (297)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 4444555555544444444433333321 1234544444443333
No 5
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.45 E-value=43 Score=26.09 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHh---cCChHHHHHHHHhhhh
Q 028702 127 QINAFLTQFSGFIEGYGPAGYALFVAVYAGLEIL---AIPAIPLTMSAGLLFG 176 (205)
Q Consensus 127 ~i~~~l~~L~~~i~~~G~~gpl~filiy~l~~vl---~iP~~~LtlaaG~LFG 176 (205)
+|+-++-++..|+.+...-+..+++..+++.+.+ .+|++++.++|.++.|
T Consensus 127 NWrPl~vk~Et~a~~~~At~v~~~~fs~~~g~~~~~~g~~~t~vgi~giii~~ 179 (199)
T d1rh1a2 127 NWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLSATVVGFVGVVIAG 179 (199)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344455566666655555555555555554433 2445555555544443
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=28.51 E-value=50 Score=21.80 Aligned_cols=18 Identities=6% Similarity=0.242 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 028702 105 LAGVLLLVVVGGFGTMGY 122 (205)
Q Consensus 105 La~vlll~llg~~~l~~~ 122 (205)
|.+++|+++++++++-.|
T Consensus 7 lVViaIIgILaaia~P~~ 24 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAY 24 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566677766654433
No 7
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=26.01 E-value=73 Score=24.67 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHH---HHhcCChHHHHHHH
Q 028702 130 AFLTQFSGFIEGYGPAGYALFVAVYAGL---EILAIPAIPLTMSA 171 (205)
Q Consensus 130 ~~l~~L~~~i~~~G~~gpl~filiy~l~---~vl~iP~~~Ltlaa 171 (205)
-++-+++.|+-+...-+.++.+..+++. ..+.+|++++.++|
T Consensus 128 Pl~l~~Es~~~~~~At~va~~~fs~~~~~~~~~~g~~~~~iGI~g 172 (197)
T d1cola_ 128 PLMLEVESWVLSGIASSVALGIFSATLGAYALSLGVPAIAVGIAG 172 (197)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccccccHHHHHH
Confidence 3444555555543333333333333222 23346666665554
No 8
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=17.23 E-value=1.2e+02 Score=19.05 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhhhHHHH
Q 028702 151 VAVYAGLEILAIPAIPLTMSAGLLFGSVTGT 181 (205)
Q Consensus 151 iliy~l~~vl~iP~~~LtlaaG~LFG~~~Gt 181 (205)
+++++....+.++.+.+...+|. .|...|+
T Consensus 54 i~~~~~L~~~Gi~~t~l~a~~G~-~gvaiGf 83 (86)
T d2vv5a3 54 FTLIAALGRVGVQTASVIAVLGA-AGLVVGL 83 (86)
T ss_dssp HHHHHHHHTTTCCSTTHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH-HHHHHHH
Confidence 33444445667886666555554 2554444
No 9
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.08 E-value=1.7e+02 Score=20.83 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcH-------HHHHHHH-HHHHHHHHhhCChH
Q 028702 100 VKGSILAGVLLLVVVGGFGTMGYVYK-------DQINAFL-TQFSGFIEGYGPAG 146 (205)
Q Consensus 100 ~r~~iLa~vlll~llg~~~l~~~l~~-------~~i~~~l-~~L~~~i~~~G~~g 146 (205)
-|+.|.+.+...+.++.-..- --.. +.+.+++ +.+.+||+++|-|.
T Consensus 95 NWGRIval~~F~~~la~~~~~-~~~~~~v~~i~~~~~~fl~~~l~~WI~~~GGW~ 148 (162)
T d2jm6b1 95 NWGRIVTLISFGAFVAKHLKS-VNQESFIEPLAETITDVLVRTKRDWLVKQRGWD 148 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSHHHHHHTTTHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHHhHHHHHHHCCCHH
Confidence 488877766655555432110 0001 1122232 45789999998885
No 10
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.79 E-value=2.5e+02 Score=20.09 Aligned_cols=54 Identities=13% Similarity=-0.063 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHH-------HHhhhhcHHHHHHHHHHHHHHHHhhCChHHHH
Q 028702 96 GDTAVKGSILAGVLLLVVVGGF-------GTMGYVYKDQINAFLTQFSGFIEGYGPAGYAL 149 (205)
Q Consensus 96 ~~~a~r~~iLa~vlll~llg~~-------~l~~~l~~~~i~~~l~~L~~~i~~~G~~gpl~ 149 (205)
.++.-|+.+.+.+...+.++.- ....-+..--..-..+.+..||+++|-|.-+.
T Consensus 96 ~dginWGRIVal~~F~~~la~~~~~~~~~~~v~~i~~~~~~~l~~~l~~WI~~~GGW~gf~ 156 (164)
T d1g5ma_ 96 RDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNIALWMTEYLNRHLHTWIQDNGGWDAFV 156 (164)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHTCHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhHHHHHHHcCCHHHHH
Done!