Query 028703
Match_columns 205
No_of_seqs 136 out of 736
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 02:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 2.4E-28 8.2E-33 234.1 20.6 189 2-197 750-938 (939)
2 3cww_A Insulysin, insulin-degr 100.0 1.4E-27 4.7E-32 230.1 23.7 198 2-200 776-983 (990)
3 3gwb_A Peptidase M16 inactive 99.7 1.9E-15 6.4E-20 132.1 16.2 152 3-162 267-423 (434)
4 1pp9_B Ubiquinol-cytochrome C 99.6 3E-14 1E-18 124.6 17.9 149 2-161 269-431 (439)
5 1hr6_A Alpha-MPP, mitochondria 99.6 6.7E-14 2.3E-18 124.7 17.9 153 3-160 261-437 (475)
6 3amj_B Zinc peptidase inactive 99.6 1.3E-13 4.5E-18 120.1 17.0 151 2-161 259-415 (424)
7 3d3y_A Uncharacterized protein 99.5 3.5E-13 1.2E-17 117.0 17.6 134 2-142 272-411 (425)
8 3cx5_A Cytochrome B-C1 complex 99.5 8.4E-13 2.9E-17 114.9 19.1 150 2-161 249-414 (431)
9 3ih6_A Putative zinc protease; 99.4 4.3E-12 1.5E-16 100.1 15.7 135 3-142 42-181 (197)
10 2fge_A Atprep2;, zinc metallop 99.3 9.1E-12 3.1E-16 120.2 13.8 145 2-161 828-976 (995)
11 3hdi_A Processing protease; CA 99.3 1.3E-10 4.6E-15 101.2 18.5 148 3-161 252-405 (421)
12 3eoq_A Putative zinc protease; 99.3 2.3E-10 7.9E-15 99.4 18.7 146 4-160 254-404 (406)
13 1hr6_B Beta-MPP, mitochondrial 99.2 6.8E-10 2.3E-14 97.1 18.3 150 3-160 264-428 (443)
14 1pp9_A Ubiquinol-cytochrome C 99.2 8.3E-10 2.8E-14 97.0 18.0 148 4-161 269-429 (446)
15 3ami_A Zinc peptidase; alpha/b 99.1 7.4E-09 2.5E-13 90.9 17.5 135 4-142 267-409 (445)
16 3go9_A Insulinase family prote 98.8 4.5E-07 1.6E-11 81.3 18.5 133 5-142 292-435 (492)
17 3s5m_A Falcilysin; M16 metallo 98.3 8.1E-06 2.8E-10 80.7 14.1 147 2-160 1023-1173(1193)
18 2fge_A Atprep2;, zinc metallop 98.0 7.2E-05 2.5E-09 72.0 14.0 136 4-142 318-470 (995)
19 3s5m_A Falcilysin; M16 metallo 97.8 0.00035 1.2E-08 69.1 14.6 149 5-160 420-588 (1193)
20 1q2l_A Protease III; hydrolase 97.7 0.00014 4.7E-09 69.5 9.6 133 6-142 286-426 (939)
21 3cww_A Insulysin, insulin-degr 97.2 0.0017 5.8E-08 62.3 11.1 136 4-142 301-443 (990)
22 3cx5_B Cytochrome B-C1 complex 97.0 0.00055 1.9E-08 57.6 4.8 82 2-97 234-315 (352)
23 3amj_B Zinc peptidase inactive 96.6 0.088 3E-06 44.9 15.5 95 62-162 104-200 (424)
24 3cx5_A Cytochrome B-C1 complex 95.8 0.18 6.3E-06 42.8 13.2 142 3-162 42-190 (431)
25 3d3y_A Uncharacterized protein 95.4 0.18 6.2E-06 42.7 11.7 126 27-161 72-210 (425)
26 3gwb_A Peptidase M16 inactive 95.2 0.24 8.2E-06 42.2 12.0 97 61-162 108-207 (434)
27 3hdi_A Processing protease; CA 94.9 0.15 5.2E-06 43.4 9.9 122 24-161 69-193 (421)
28 3ami_A Zinc peptidase; alpha/b 94.6 0.63 2.2E-05 40.0 13.0 124 24-163 74-201 (445)
29 3eoq_A Putative zinc protease; 94.6 0.15 5.2E-06 43.4 8.8 141 4-163 44-194 (406)
30 1pp9_B Ubiquinol-cytochrome C 94.1 0.44 1.5E-05 40.6 10.8 93 61-159 116-211 (439)
31 1hr6_B Beta-MPP, mitochondrial 94.1 1 3.5E-05 38.4 13.1 97 61-162 100-199 (443)
32 1pp9_A Ubiquinol-cytochrome C 94.0 0.99 3.4E-05 38.7 12.8 97 61-162 106-205 (446)
33 1hr6_A Alpha-MPP, mitochondria 93.4 0.26 8.9E-06 43.0 8.2 96 61-162 98-196 (475)
34 3cx5_B Cytochrome B-C1 complex 93.2 0.15 5E-06 42.5 6.0 118 24-161 56-177 (352)
35 3go9_A Insulinase family prote 79.9 1.9 6.6E-05 37.9 4.8 109 39-162 112-222 (492)
36 3irh_A HD domain protein; phos 42.3 13 0.00044 33.2 2.5 22 6-27 53-74 (480)
37 2q14_A Phosphohydrolase; BT420 37.5 15 0.0005 32.0 2.1 22 7-28 23-44 (410)
38 2xrh_A Protein HP0721; unknown 35.8 1.1E+02 0.0037 21.2 6.3 22 71-92 64-85 (100)
39 3u1n_A SAM domain and HD domai 35.1 20 0.00068 32.3 2.5 23 6-28 32-54 (528)
40 2of5_H Leucine-rich repeat and 32.8 1.2E+02 0.0042 21.0 6.9 69 64-142 26-97 (118)
41 2l7k_A Uncharacterized protein 31.1 40 0.0014 22.2 2.9 26 58-83 35-60 (76)
42 2hek_A Hypothetical protein; p 28.0 30 0.001 29.5 2.4 23 6-28 17-39 (371)
43 2yqf_A Ankyrin-1; death domain 24.6 1.4E+02 0.0047 20.5 5.0 58 74-141 40-100 (111)
44 2pgs_A Putative deoxyguanosine 24.2 26 0.00088 30.9 1.3 80 9-97 34-117 (451)
45 1ojh_A NBLA; degradation prote 24.1 77 0.0026 20.1 3.2 43 65-107 15-57 (65)
46 1use_A VAsp, vasodilator-stimu 23.4 1.2E+02 0.0041 17.8 4.0 24 52-75 4-27 (45)
47 2jak_A Serine/threonine-protei 22.9 1E+02 0.0036 26.5 4.9 46 62-107 314-363 (392)
48 3r0a_A Putative transcriptiona 20.5 1E+02 0.0035 21.3 3.7 56 14-73 57-112 (123)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.96 E-value=2.4e-28 Score=234.06 Aligned_cols=189 Identities=26% Similarity=0.368 Sum_probs=172.0
Q ss_pred chHHHHHHHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 028703 2 NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFK 81 (205)
Q Consensus 2 ~a~~~Ll~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~~ls~eeF~ 81 (205)
.+++.+|++++++++|++|||++||||.|+|+.....+..|+.|+|||+.++|+++..+|+.|+..+...+.+||+++|+
T Consensus 750 ~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~ 829 (939)
T 1q2l_A 750 SAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFA 829 (939)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46789999999999999999999999999999999999999999999988999999999999999999888899999999
Q ss_pred HHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703 82 NNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH 161 (205)
Q Consensus 82 ~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~ 161 (205)
.+|+++++++.+.+.|+.+++.++|.+|..+.+.|++.+..++.|++||++|+.+++++++ .++++++++|+|.|..+
T Consensus 830 ~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l--~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 830 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAV--VEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHT--TSCSSEEEEEEECCSSH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHh--cCCCCCEEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998 46788899999999875
Q ss_pred CcccccccCCCCCCCccccCCHHhHhccCCCcCCCC
Q 028703 162 APELKEETSESADPHIVHIDDIFSFRRSQPLYGSFK 197 (205)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~i~d~~~fk~~~~~~~~~~ 197 (205)
... .....+....|+|+..||+.+++||..+
T Consensus 908 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (939)
T 1q2l_A 908 GKA-----EYVHPEGWKVWENVSALQQTMPLMSEKN 938 (939)
T ss_dssp HHH-----CCCCCTTCEECSCHHHHHTTSCEEECC-
T ss_pred Ccc-----cccccCCCcEeCCHHHHhhcCccccccc
Confidence 321 1124456678999999999999999653
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.96 E-value=1.4e-27 Score=230.13 Aligned_cols=198 Identities=38% Similarity=0.596 Sum_probs=173.8
Q ss_pred chHHHHHHHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 028703 2 NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFK 81 (205)
Q Consensus 2 ~a~~~Ll~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~~ls~eeF~ 81 (205)
.+.+.||+++|++++|++|||++||||.|+|+.....+..|+.|.|||+ ++|+++..+|+.|+..+...+.++|+++|+
T Consensus 776 ~~~l~ll~~il~~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~-~dp~~~~~~i~~f~~~~~~l~~~~te~el~ 854 (990)
T 3cww_A 776 NMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSE-KPPHYLESRVEAFLITMEKSIEDMTEEAFQ 854 (990)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEES-SCHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4788999999999999999999999999999999999999999999999 999999999999999999888899999999
Q ss_pred HHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703 82 NNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH 161 (205)
Q Consensus 82 ~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~ 161 (205)
.+|.++++++..++.++.+++.++|.+|..+.|.|+++++.++.|+++|++|+.+|+++++.+++.++++++++|.|..+
T Consensus 855 ~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~ 934 (990)
T 3cww_A 855 KHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREM 934 (990)
T ss_dssp HHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999995444667899999999976
Q ss_pred Ccccc--------cccCC--CCCCCccccCCHHhHhccCCCcCCCCCCc
Q 028703 162 APELK--------EETSE--SADPHIVHIDDIFSFRRSQPLYGSFKGGF 200 (205)
Q Consensus 162 ~~~~~--------~~~~~--~~~~~~~~i~d~~~fk~~~~~~~~~~~~~ 200 (205)
..... +.... ...+....|+|+..||+.+++||..++..
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (990)
T 3cww_A 935 DSNPVVGEFPAQNDINLSQAPALPQPEVIQNMTAFKRGLPLFPLVKPHI 983 (990)
T ss_dssp ----------------CCCCCCCCCCEECSCHHHHHHTSCBCCCCCCC-
T ss_pred cccccccccccchhhhhcccccCCCCeEecCHHHHhhcCcccccCCCcc
Confidence 44210 00000 23445678999999999999999877644
No 3
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.9e-15 Score=132.06 Aligned_cols=152 Identities=11% Similarity=-0.036 Sum_probs=118.6
Q ss_pred hHHHHHHHH-----HchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCH
Q 028703 3 VKLQLLALI-----AKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTS 77 (205)
Q Consensus 3 a~~~Ll~~i-----ls~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~~ls~ 77 (205)
+.+.+++.+ +++++|+.||++++|+|.|+++.....+.+.+.++++++...++.+...|.+.+..+.. .++++
T Consensus 267 ~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~--~~~~~ 344 (434)
T 3gwb_A 267 AAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLK--NGPTQ 344 (434)
T ss_dssp HHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHH--HCCCH
T ss_pred HHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHh--cCCCH
Confidence 456677777 78899999999999999999999988888888888886433344444444444444332 48999
Q ss_pred HHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEe
Q 028703 78 DQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVY 157 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~ 157 (205)
++|+.+|++++.++.....+....+.++|..... +..++..+..++.|+++|.+|+.+++++++ ... +..+.+.
T Consensus 345 ~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l---~~~--~~~~~vv 418 (434)
T 3gwb_A 345 KELDDAKRELAGSFPLSTASNADIVGQLGAMGFY-NLPLSYLEDFMRQSQELTVEQVKAAMNKHL---NVD--KMVIVSA 418 (434)
T ss_dssp HHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHT-TCCTTHHHHHHHHHHHCCHHHHHHHHHHHC---CGG--GCEEEEE
T ss_pred HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHhCCHHHHHHHHHHhc---Chh--hEEEEEE
Confidence 9999999999999999999999999999998766 467788889999999999999999999999 222 3456666
Q ss_pred eCCCC
Q 028703 158 GSLHA 162 (205)
Q Consensus 158 ~~~~~ 162 (205)
|+..+
T Consensus 419 g~~~~ 423 (434)
T 3gwb_A 419 GPTVA 423 (434)
T ss_dssp ECCCC
T ss_pred cCccc
Confidence 77653
No 4
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.61 E-value=3e-14 Score=124.55 Aligned_cols=149 Identities=7% Similarity=0.008 Sum_probs=127.2
Q ss_pred chHHHHHHHHH------------chHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHH
Q 028703 2 NVKLQLLALIA------------KQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFE 69 (205)
Q Consensus 2 ~a~~~Ll~~il------------s~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~ 69 (205)
.+.+.++++++ ++++|+.||++++|+|.|+++.....+.+.+.+++++ +|+.+...++.|+..+.
T Consensus 269 ~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~---~~~~~~~~~~~~~~~l~ 345 (439)
T 1pp9_B 269 ANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTIS---QAASAGDVIKAAYNQVK 345 (439)
T ss_dssp HHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEE---EGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEe---CHHHHHHHHHHHHHHHH
Confidence 35678888888 5899999999999999999999877777777777774 67899999999999998
Q ss_pred HHHh-cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhc-CCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 028703 70 SKLY-EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISD-GILKFDRREVEVAALRQLTQQELIYFFNENIKAGAP 147 (205)
Q Consensus 70 ~~L~-~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~-~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~ 147 (205)
...+ ++++++|+.+|++++.++.....+....+.++|..+.. +.+. ..+..++.|+++|.+|+.+++++++ .
T Consensus 346 ~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vt~~dv~~~a~~~~---~- 419 (439)
T 1pp9_B 346 TIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT--PPSTVLQQIDAVADADVINAAKKFV---S- 419 (439)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHTCCHHHHHHHHHHHH---H-
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHhcCCHHHHHHHHHHHh---c-
Confidence 8775 79999999999999999999999999999999998775 5554 3578899999999999999999998 2
Q ss_pred CccEEEEEEeeCCC
Q 028703 148 RKKTLSVRVYGSLH 161 (205)
Q Consensus 148 ~~~~l~i~v~~~~~ 161 (205)
.+..+.+.|+..
T Consensus 420 --~~~~~~v~g~~~ 431 (439)
T 1pp9_B 420 --GRKSMAASGNLG 431 (439)
T ss_dssp --SCEEEEEEECGG
T ss_pred --CCceEEEECCcc
Confidence 256777777743
No 5
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.58 E-value=6.7e-14 Score=124.66 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=126.6
Q ss_pred hHHHHHHHHHc---------------hHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHH
Q 028703 3 VKLQLLALIAK---------------QPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQM 67 (205)
Q Consensus 3 a~~~Ll~~ils---------------~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~ 67 (205)
+.+.+++.+|. +++|+.||++++|+|.|++......+.+.+.|++++ +|+.+...++.++.+
T Consensus 261 ~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~---~~~~~~~~~~~~~~~ 337 (475)
T 1hr6_A 261 YALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSC---IPQAAPQAVEVIAQQ 337 (475)
T ss_dssp HHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEE---CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEEe---CHHHHHHHHHHHHHH
Confidence 45678888874 899999999999999999999887777778888884 688999999999999
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHh-cCCCCccccHHHHHHHhcCCHHHHHHHHHHhh
Q 028703 68 FESKLY----EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREIS-DGILKFDRREVEVAALRQLTQQELIYFFNENI 142 (205)
Q Consensus 68 ~~~~L~----~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~-~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~ 142 (205)
+..... ++|++||+.+|+.++.++.....+....+.++|..+. .+.. ++ .+..++.|+++|.+|+.+++++++
T Consensus 338 l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~~~~~~~i~~vt~~dv~~~a~~~l 415 (475)
T 1hr6_A 338 MYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRK-IP-VNEMISKIEDLKPDDISRVAEMIF 415 (475)
T ss_dssp HHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCC-CC-HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-CC-HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 987665 4999999999999999999999999999999999764 4543 45 577889999999999999999999
Q ss_pred hcCCC----CccEEEEEEeeCC
Q 028703 143 KAGAP----RKKTLSVRVYGSL 160 (205)
Q Consensus 143 ~~~~~----~~~~l~i~v~~~~ 160 (205)
.++.. .++++++.+.|+.
T Consensus 416 ~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 416 TGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp TTCCCCTTCCCCCCEEEEESCG
T ss_pred hhccccccccCCCcEEEEECCc
Confidence 32100 0136778888875
No 6
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.56 E-value=1.3e-13 Score=120.14 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=117.5
Q ss_pred chHHHHHHHH-----HchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-cC
Q 028703 2 NVKLQLLALI-----AKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-EM 75 (205)
Q Consensus 2 ~a~~~Ll~~i-----ls~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~l 75 (205)
.+.+.+++.+ +++++|+.||++++|+|.|+++.....+.+.+.++++++ |+.+...++.+...+..... ++
T Consensus 259 ~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~---~~~~~~~~~~i~~~l~~l~~~~~ 335 (424)
T 3amj_B 259 FFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETR---AEKADEAVQVANDTLDAFLREGP 335 (424)
T ss_dssp HHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEE---STTHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeC---cccHHHHHHHHHHHHHHHHhcCC
Confidence 3456777777 778999999999999999999998887778888888864 34455555555555554443 79
Q ss_pred CHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEE
Q 028703 76 TSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVR 155 (205)
Q Consensus 76 s~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~ 155 (205)
++++|+.+|++++.++.....+....+..++..... ++.++..+...+.|+++|.+|+.+++++++. ++ ...+.
T Consensus 336 t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~---~~--~~~~~ 409 (424)
T 3amj_B 336 TDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYY-GLPLDYLDHYTERVQAVTVEQVREAFARHVK---RE--NLITV 409 (424)
T ss_dssp CHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHT-TCCTTTTTSHHHHHHTCCHHHHHHHHHHHCC---GG--GCEEE
T ss_pred CHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHc-CCChhHHHHHHHHHHcCCHHHHHHHHHHhcC---cc--ceEEE
Confidence 999999999999999999889999999988865544 5567776778899999999999999999992 22 23444
Q ss_pred EeeCCC
Q 028703 156 VYGSLH 161 (205)
Q Consensus 156 v~~~~~ 161 (205)
+.|+..
T Consensus 410 ~~~~~~ 415 (424)
T 3amj_B 410 VVGGKA 415 (424)
T ss_dssp EEECC-
T ss_pred EECChh
Confidence 446654
No 7
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.53 E-value=3.5e-13 Score=116.95 Aligned_cols=134 Identities=13% Similarity=0.034 Sum_probs=114.9
Q ss_pred chHHHHHHHHH----chHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-cCC
Q 028703 2 NVKLQLLALIA----KQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-EMT 76 (205)
Q Consensus 2 ~a~~~Ll~~il----s~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~ls 76 (205)
.+.+.++++++ ++++|++||++++|+|.|+++.....+..+ |++. .+|+.+...++.|...+..... +++
T Consensus 272 ~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~----i~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~ 346 (425)
T 3d3y_A 272 YFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMT----VQTG-IDGKNRNQVLRLISTELENIRLGKIR 346 (425)
T ss_dssp HHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEE----EEEE-ECGGGHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEE----EEEe-cCHhhHHHHHHHHHHHHHHHHcCCCC
Confidence 45678999999 999999999999999999999876544433 3332 4688999999999999888776 799
Q ss_pred HHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhc-CCCCccccHHHHHHHhcCCHHHHHHHHHHhh
Q 028703 77 SDQFKNNVNALIDMKLEKHKNLKEESGFYWREISD-GILKFDRREVEVAALRQLTQQELIYFFNENI 142 (205)
Q Consensus 77 ~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~-~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~ 142 (205)
+++|+.+|++++.++.....+....+.++|..+.. +... + .+..++.|+++|.+|+.+++++++
T Consensus 347 ~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-~~~~~~~i~~vt~edv~~~a~~~~ 411 (425)
T 3d3y_A 347 ELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTML-T-AEEWIARINAVTIPEIQEVAKRLE 411 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCC-C-HHHHHHHHHHCCHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCC-C-HHHHHHHHHhCCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999988 5543 4 588899999999999999999976
No 8
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.52 E-value=8.4e-13 Score=114.92 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=114.0
Q ss_pred chHHHHHHHHHc-------------hHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 028703 2 NVKLQLLALIAK-------------QPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMF 68 (205)
Q Consensus 2 ~a~~~Ll~~ils-------------~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~ 68 (205)
.+.+.+++.++. +++|+.||. ++|+|.|+++.....+.+.+.+.++++. ++.+...++.+...+
T Consensus 249 ~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i~~~~~~--~~~~~~~~~~~~~~l 325 (431)
T 3cx5_A 249 YFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGFSTATRN--VTMIDDLIHFTLKQW 325 (431)
T ss_dssp HHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEEEEEESC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEEEEeeCc--hhhHHHHHHHHHHHH
Confidence 345678888876 799999995 6999999999887666666677777643 244444455555444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhc--cCcChHHHHHHhHHHHh-cCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 028703 69 ESKLYEMTSDQFKNNVNALIDMKLE--KHKNLKEESGFYWREIS-DGILKFDRREVEVAALRQLTQQELIYFFNENIKAG 145 (205)
Q Consensus 69 ~~~L~~ls~eeF~~~k~~li~~l~~--~~~sl~~~~~~~w~~I~-~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~ 145 (205)
....++++++||+.+|+.++.++.. ...+....+.++|..+. .|.+. + .+..++.|+++|.+|+.+++++++.
T Consensus 326 ~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~-~~~~~~~i~~vt~~dv~~~a~~~l~-- 401 (431)
T 3cx5_A 326 NRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKL-S-LGEAFKKIDAITVKDVKAWAGKRLW-- 401 (431)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCC-C-HHHHHHHHHHCCHHHHHHHHHHHTT--
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCC-C-HHHHHHHHhcCCHHHHHHHHHHHcc--
Confidence 4433479999999999999999999 89999999999999764 56544 3 4778899999999999999999983
Q ss_pred CCCccEEEEEEeeCCC
Q 028703 146 APRKKTLSVRVYGSLH 161 (205)
Q Consensus 146 ~~~~~~l~i~v~~~~~ 161 (205)
.+ ...+.+.|+..
T Consensus 402 -~~--~~~~~v~g~~~ 414 (431)
T 3cx5_A 402 -DQ--DIAIAGTGQIE 414 (431)
T ss_dssp -TC--CCEEEEEESCT
T ss_pred -cC--CcEEEEEcchh
Confidence 22 34566667643
No 9
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.44 E-value=4.3e-12 Score=100.10 Aligned_cols=135 Identities=11% Similarity=0.026 Sum_probs=105.4
Q ss_pred hHHHHHHHHHc----hHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCC-ChhHHHHHHHHHHHHHHHHHhcCCH
Q 028703 3 VKLQLLALIAK----QPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVK-GPKYIDLRVESFLQMFESKLYEMTS 77 (205)
Q Consensus 3 a~~~Ll~~ils----~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~-~~~~l~~~i~~Fl~~~~~~L~~ls~ 77 (205)
..+.+++.+|. +++|+.||.+ +|+|.|+++.....+.+.+.+++..... +++.+...|.+.+..+.. .++++
T Consensus 42 ~al~vl~~iLggg~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~--~~it~ 118 (197)
T 3ih6_A 42 VGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSS--KPFSQ 118 (197)
T ss_dssp HHHHHHHHHHHSSTTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEEEECCTTSCHHHHHHHHHHHHHCTTT--SCCCH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHhc-CceEEEEeccccccCCeEEEEEEEECCCCCHHHHHHHHHHHHHHHHh--CCCCH
Confidence 34566666665 6999999975 9999999998876666666666665322 456666655555544322 37999
Q ss_pred HHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhh
Q 028703 78 DQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENI 142 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~ 142 (205)
++|+..|+.++..+.....+....+..++..+..|+. +......+.|+++|.+|+.++++++|
T Consensus 119 ~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~--~~~~~~~~~i~~vT~~dv~~~a~~~l 181 (197)
T 3ih6_A 119 EELERARSKWLTAWQQTYADPEKVGVALSEAIASGDW--RLFFLQRDRVREAKLDDVQRAAVAYL 181 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCT--THHHHHHHHHHTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 9999999999999998888999999999988877643 44567889999999999999999999
No 10
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.34 E-value=9.1e-12 Score=120.18 Aligned_cols=145 Identities=6% Similarity=-0.064 Sum_probs=119.2
Q ss_pred chHHHHHHHHHch-HHHHHhhhccccceEEEEEEeeeCCeeE-EEEEEeCCCCChhHHHHHHHHHHHHHHHHHh--cCCH
Q 028703 2 NVKLQLLALIAKQ-PAFHQLRTVEQLGYITALLQRNDFGIHG-VQFIIQSSVKGPKYIDLRVESFLQMFESKLY--EMTS 77 (205)
Q Consensus 2 ~a~~~Ll~~ils~-~~f~~LRTkqQLGYvV~s~~~~~~~~~g-l~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~--~ls~ 77 (205)
.+.+.+++++|.. ++|+.||+ ++++|.|+|+... .|..+ +..+ .+| .+...++.|...+. .|. ++|+
T Consensus 828 ~~al~vl~~iLg~~~L~~~iRe-~g~aYg~~s~~~~-~G~~~~~~s~-----~dp-~~~~~~~~~~~~~~-~l~~~~~te 898 (995)
T 2fge_A 828 DGSAYVISKHISNTWLWDRVRV-SGGAYGGFCDFDS-HSGVFSYLSY-----RDP-NLLKTLDIYDGTGD-FLRGLDVDQ 898 (995)
T ss_dssp CTHHHHHHHHHHHTHHHHHTTT-TTCCSEEEEEEET-TTTEEEEEEE-----SBS-CSHHHHHHHHTHHH-HHHTCCCCH
T ss_pred cHHHHHHHHHHCCCccHHHhhh-cCCCcccceEeCC-CccEEEEEEE-----cCC-CHHHHHHHHHHHHH-HHhcCCCCH
Confidence 4678899999975 78899999 9999999999887 55555 4433 344 46788888888776 554 7999
Q ss_pred HHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEe
Q 028703 78 DQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVY 157 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~ 157 (205)
+||+.+|.++++++ ..+.+..+++.++|..+..| ..++.+++.++.|.++|++|++++++.++.+ ..+.++.|.
T Consensus 899 ~el~~ak~~li~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~----~~~~~~~vv 972 (995)
T 2fge_A 899 ETLTKAIIGTIGDV-DSYQLPDAKGYSSLLRHLLG-VTDEERQRKREEILTTSLKDFKDFAQAIDVV----RDKGVAVAV 972 (995)
T ss_dssp HHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH----HHHCEEEEE
T ss_pred HHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHcC-cCHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----hccCCEEEE
Confidence 99999999999998 56889999999999999886 4678889999999999999999999999842 135778888
Q ss_pred eCCC
Q 028703 158 GSLH 161 (205)
Q Consensus 158 ~~~~ 161 (205)
|+..
T Consensus 973 G~~~ 976 (995)
T 2fge_A 973 ASAE 976 (995)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 11
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.31 E-value=1.3e-10 Score=101.15 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=116.2
Q ss_pred hHHHHHHHHH----chHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-cCCH
Q 028703 3 VKLQLLALIA----KQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-EMTS 77 (205)
Q Consensus 3 a~~~Ll~~il----s~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~ls~ 77 (205)
..+.+++.++ ++++|+.||.+++|.|.|+++.....+.+.+.+++. .+|+.+...++.+.+.+..... ++++
T Consensus 252 ~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~---~~~~~~~~~~~~i~~~l~~l~~~~~t~ 328 (421)
T 3hdi_A 252 YALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAG---TGHDQLDDLVYSIQETTSALAEKGLTE 328 (421)
T ss_dssp HHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEE---EEGGGHHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEE---eCHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3456666665 589999999999999999999888777777777776 3566777777778777777665 7999
Q ss_pred HHHHHHHHHHHHHHhccCcChHHHHHHhHHH-HhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEE
Q 028703 78 DQFKNNVNALIDMKLEKHKNLKEESGFYWRE-ISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRV 156 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~-I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v 156 (205)
+|++..|+.++.++.....+....+..++.. +..+.. +..+..++.|+++|.+|+.+++++++ +. ..++.+
T Consensus 329 ~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~vt~~dv~~~a~~~~-~~-----~~~~~v 400 (421)
T 3hdi_A 329 KELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKH--RSLDEMIEQINAVQKQDVSRLAKILL-SA-----SPSISL 400 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--CCHHHHHHHHHHCCHHHHHHHHHHHT-TS-----CCEEEE
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHcCCHHHHHHHHHHHc-cc-----CcEEEE
Confidence 9999999999999998888888888887554 444433 33577889999999999999999988 32 245666
Q ss_pred eeCCC
Q 028703 157 YGSLH 161 (205)
Q Consensus 157 ~~~~~ 161 (205)
.|+..
T Consensus 401 vgp~~ 405 (421)
T 3hdi_A 401 INANG 405 (421)
T ss_dssp EESSC
T ss_pred ECchh
Confidence 67744
No 12
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.29 E-value=2.3e-10 Score=99.41 Aligned_cols=146 Identities=10% Similarity=-0.013 Sum_probs=114.4
Q ss_pred HHHHHHHHH----chHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-cCCHH
Q 028703 4 KLQLLALIA----KQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-EMTSD 78 (205)
Q Consensus 4 ~~~Ll~~il----s~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~ls~e 78 (205)
.+.+++.+| ++++|+.||. ++|+|.|+++.....+.+.+.++++. +|+.+...++.+.+.+..... +++++
T Consensus 254 ~l~vl~~iLgg~~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~---~~~~~~~~~~~i~~~l~~l~~~~~t~~ 329 (406)
T 3eoq_A 254 PGQVLAHLLGEEGSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQA---DPARKGEVLAVLQEELDRLGREGVGEE 329 (406)
T ss_dssp HHHHHHHHHHCTTTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEE---CGGGHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEe---CcchHHHHHHHHHHHHHHHHhCCCCHH
Confidence 455566655 7899999999 99999999999988877777777774 466677777777777766554 79999
Q ss_pred HHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEee
Q 028703 79 QFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYG 158 (205)
Q Consensus 79 eF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~ 158 (205)
|++..|+.++.++...-.+....+.+++.....+. ..+..+..++.|+++|.+|+.+++++++ .++ .. +.+.|
T Consensus 330 el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vt~~dv~~~a~~~l---~~~--~~-~~vvG 402 (406)
T 3eoq_A 330 EVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTG-RYLSLEEVKARVQRVTSREVNALLERGF---LEK--GL-YYLVL 402 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHCCHHHHHHHHHTTT---TTS--CE-EEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhCCHHHHHHHHHHhc---Ccc--cE-EEEEC
Confidence 99999999999998888888888888877665432 2344578889999999999999999999 233 23 55557
Q ss_pred CC
Q 028703 159 SL 160 (205)
Q Consensus 159 ~~ 160 (205)
+.
T Consensus 403 p~ 404 (406)
T 3eoq_A 403 PH 404 (406)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 13
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.22 E-value=6.8e-10 Score=97.14 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=113.4
Q ss_pred hHHHHHHHHH-------------chHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHH
Q 028703 3 VKLQLLALIA-------------KQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFE 69 (205)
Q Consensus 3 a~~~Ll~~il-------------s~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~ 69 (205)
..+.+++.+| ++++|+.||.+++|.|.|++......+.+.+.+++..+ ..|+.+...++.+.+.+.
T Consensus 264 ~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~-~~~~~~~~~~~~~~~~l~ 342 (443)
T 1hr6_B 264 FVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTD-SNEHNVRLIVNEILKEWK 342 (443)
T ss_dssp HHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEE-TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEec-CChhHHHHHHHHHHHHHH
Confidence 4566778777 48999999999999999999988766665666666632 116677777777777776
Q ss_pred HHHh-cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHh-cCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 028703 70 SKLY-EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREIS-DGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAP 147 (205)
Q Consensus 70 ~~L~-~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~-~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~ 147 (205)
.... +++++||+..|+.++.++...-.+....+..+...+. .+. ..+. +...+.|+++|.+|+.+++++++. .
T Consensus 343 ~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~~~i~~vt~~dv~~~a~~~l~---~ 417 (443)
T 1hr6_B 343 RIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGK-RLSP-EEVFEQVDKITKDDIIMWANYRLQ---N 417 (443)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSS-CCCH-HHHHHHHHTCCHHHHHHHHHHHSS---S
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC-cCCH-HHHHHHHHhCCHHHHHHHHHHHhc---c
Confidence 6555 5999999999999999998887777777777776653 443 3443 677889999999999999999993 2
Q ss_pred CccEEEEEEeeCC
Q 028703 148 RKKTLSVRVYGSL 160 (205)
Q Consensus 148 ~~~~l~i~v~~~~ 160 (205)
+ ...+.+.|+.
T Consensus 418 ~--~~~~~v~g~~ 428 (443)
T 1hr6_B 418 K--PVSMVALGNT 428 (443)
T ss_dssp C--CEEEEEEECG
T ss_pred C--CcEEEEECCc
Confidence 2 3456666764
No 14
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.21 E-value=8.3e-10 Score=97.04 Aligned_cols=148 Identities=9% Similarity=-0.054 Sum_probs=110.0
Q ss_pred HHHHHHHHH-------------chHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHH
Q 028703 4 KLQLLALIA-------------KQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFES 70 (205)
Q Consensus 4 ~~~Ll~~il-------------s~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~ 70 (205)
.+.+++.+| ++++|+.|| +++|.|.|+++.....+.+.+.++++. +|+.+...++.+.+.+..
T Consensus 269 al~vl~~iLg~~~~~~~~g~~~~srL~~~lr-~~glay~~~s~~~~~~~~g~~~i~~~~---~~~~~~~~~~~i~~~l~~ 344 (446)
T 1pp9_A 269 ALQVANAIIGHYDCTYGGGAHLSSPLASIAA-TNKLCQSFQTFNICYADTGLLGAHFVC---DHMSIDDMMFVLQGQWMR 344 (446)
T ss_dssp HHHHHHHHHCEEETTCSCGGGCSSHHHHHHH-HHTCCSEEEEEEEECSSCEEEEEEEEE---CTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCCCCCCCCHHHHHHH-hcCCeEEEEEecccCCCCeEEEEEEEE---CHHHHHHHHHHHHHHHHH
Confidence 456677766 689999999 678999999988766666666677764 456666666666666655
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCcc
Q 028703 71 KLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKK 150 (205)
Q Consensus 71 ~L~~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~ 150 (205)
...+++++|++..|..++.++...-.+....+..+...+...+...+ .+...+.|.++|.+|+.+++++++. .+
T Consensus 345 l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vt~edv~~~a~~~~~---~~-- 418 (446)
T 1pp9_A 345 LCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP-LAEWESRIAEVDARVVREVCSKYFY---DQ-- 418 (446)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHTCCHHHHHHHHHHHTT---TC--
T ss_pred HhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHcCCHHHHHHHHHHHcC---CC--
Confidence 44469999999999999999987767777777777766533233345 3667889999999999999999993 22
Q ss_pred EEEEEEeeCCC
Q 028703 151 TLSVRVYGSLH 161 (205)
Q Consensus 151 ~l~i~v~~~~~ 161 (205)
...+.+.|+..
T Consensus 419 ~~~~~~~g~~~ 429 (446)
T 1pp9_A 419 CPAVAGFGPIE 429 (446)
T ss_dssp CCEEEEEESCT
T ss_pred CcEEEEECCcc
Confidence 24566667643
No 15
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.07 E-value=7.4e-09 Score=90.92 Aligned_cols=135 Identities=13% Similarity=-0.008 Sum_probs=100.9
Q ss_pred HHHHHHHHHc----hHHHHHhhhccccceEEEEEEeee-CC-eeEEEEEEeCCCCChh-HHHHHHHHHHHHHHHHH-hcC
Q 028703 4 KLQLLALIAK----QPAFHQLRTVEQLGYITALLQRND-FG-IHGVQFIIQSSVKGPK-YIDLRVESFLQMFESKL-YEM 75 (205)
Q Consensus 4 ~~~Ll~~ils----~~~f~~LRTkqQLGYvV~s~~~~~-~~-~~gl~~~VQS~~~~~~-~l~~~i~~Fl~~~~~~L-~~l 75 (205)
.+.+++.++. +++|..||.+++|.|.|+++.... .+ .+.+.+.++.. |. .+...++.+...+.... .++
T Consensus 267 ~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~---~~~~~~~~~~~i~~~l~~l~~~g~ 343 (445)
T 3ami_A 267 ALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPS---KGVTIAQLETDLRAQVRDIAAKGV 343 (445)
T ss_dssp HHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEEC---TTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4456666665 899999999999999999987743 34 45555666543 22 24555555555555444 379
Q ss_pred CHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhh
Q 028703 76 TSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENI 142 (205)
Q Consensus 76 s~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~ 142 (205)
++++|+..|+.++.++.....+....+..+...+..+ ...+..+...+.|+++|.+|+.+++++++
T Consensus 344 t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~i~~vt~~dv~~~a~~~l 409 (445)
T 3ami_A 344 TEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLG-LSWRDDDRFYQQLRSVTAAEVKAAAARLL 409 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTT-CCTTHHHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcC-CChHHHHHHHHHHHcCCHHHHHHHHHHHc
Confidence 9999999999999999888778777777777766654 34456677888999999999999999999
No 16
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=98.78 E-value=4.5e-07 Score=81.28 Aligned_cols=133 Identities=10% Similarity=0.006 Sum_probs=101.5
Q ss_pred HHHHHHHHchHHHHHhhh--ccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-cCCHHHHH
Q 028703 5 LQLLALIAKQPAFHQLRT--VEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-EMTSDQFK 81 (205)
Q Consensus 5 ~~Ll~~ils~~~f~~LRT--kqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~ls~eeF~ 81 (205)
..+++.++...++..||. +++|+|.++|+.....+ ...|+|++ .++.+...++.+++++..... ++|++||+
T Consensus 292 ~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~--~~~~~i~~---~~~~~~~a~~~i~~el~~l~~~g~te~EL~ 366 (492)
T 3go9_A 292 SDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRA--QCAIHLNT---PVENLTANMTFVARELAALRANGLSQAEFD 366 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEE--EEEEEEEE---CGGGHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhc--ceEEEEEc---CcccHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 478889999999999999 88999999988765433 33466665 477788888888888777664 89999999
Q ss_pred HHHHHHHHHHhccC-----cChHHHHHHhHHHHhcCCCCccc---cHHHHHHHhcCCHHHHHHHHHHhh
Q 028703 82 NNVNALIDMKLEKH-----KNLKEESGFYWREISDGILKFDR---REVEVAALRQLTQQELIYFFNENI 142 (205)
Q Consensus 82 ~~k~~li~~l~~~~-----~sl~~~~~~~w~~I~~~~~~F~~---~~~~i~~l~~it~~dl~~f~~~~~ 142 (205)
..|..+++++.... .+....++.++..+..+...... .+...+.|+++|.+|+.+++++++
T Consensus 367 ~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l 435 (492)
T 3go9_A 367 ALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQL 435 (492)
T ss_dssp HHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 99999999987653 34566777777777665443322 223335699999999999999999
No 17
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=98.30 E-value=8.1e-06 Score=80.69 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=103.5
Q ss_pred chHHHHHHHHHc-hHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHH--H-hcCCH
Q 028703 2 NVKLQLLALIAK-QPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESK--L-YEMTS 77 (205)
Q Consensus 2 ~a~~~Ll~~ils-~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~--L-~~ls~ 77 (205)
.+.+.+++++|. +.+|+++|.|.. .|-|+|++. ..|.. .|+.- .+| .+...++.|...+... + +++|+
T Consensus 1023 ~~al~Vl~~iLg~~~L~~eIREkgG-AYg~~s~~~-~~G~f--~~~sy---rdp-~~~~tl~~~~~~~~~l~~~~~~~te 1094 (1193)
T 3s5m_A 1023 DPSFTVIVAALKNSYLWDTVRGLNG-AYGVFADIE-YDGSV--VFLSA---RDP-NLEKTLATFRESAKGLRKMADTMTE 1094 (1193)
T ss_dssp CTHHHHHHHHHHHTHHHHHHTTTTC-CSEEEEEEC-TTSEE--EEEEE---SBS-CSHHHHHHHHTHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHCccHHHHHHHhcCC-eeEEEEecc-CCCcE--EEEEE---eCC-CHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 356788888887 489999999865 999999976 33332 33322 333 2455556664443322 2 37999
Q ss_pred HHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEe
Q 028703 78 DQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVY 157 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~ 157 (205)
+|++++|.++++++- .|.+....+.+.+.....| ...+..++..+.|.++|.+|+.+..+.++.+.... ...+.|.
T Consensus 1095 eEL~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~~G-l~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~--~~~~vvv 1170 (1193)
T 3s5m_A 1095 NDLLRYIINTIGTID-KPRRGIELSKLSFLRLISN-ESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEF--EKNIVII 1170 (1193)
T ss_dssp HHHHHHHHHHHHHHS-CCCCTHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHH--TTEEEEE
T ss_pred HHHHHHHHHHHhccc-ccCChHHHHHHHHHHHHcC-cCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccc--CceEEEE
Confidence 999999999999964 7777677777777655554 56677788999999999999999999999421101 2356666
Q ss_pred eCC
Q 028703 158 GSL 160 (205)
Q Consensus 158 ~~~ 160 (205)
|+.
T Consensus 1171 G~~ 1173 (1193)
T 3s5m_A 1171 TTK 1173 (1193)
T ss_dssp ECH
T ss_pred cCH
Confidence 774
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=98.01 E-value=7.2e-05 Score=72.04 Aligned_cols=136 Identities=10% Similarity=-0.012 Sum_probs=85.2
Q ss_pred HHHHHHHHH----chHHHHHhhhccccceEEEEE-EeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-cCCH
Q 028703 4 KLQLLALIA----KQPAFHQLRTVEQLGYITALL-QRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-EMTS 77 (205)
Q Consensus 4 ~~~Ll~~il----s~~~f~~LRTkqQLGYvV~s~-~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~ls~ 77 (205)
.+.+|+.+| ++++|..||.+ +|+|.|+++ .....+.+.+.+.+.+ .+++.+...++..+..+..... ++++
T Consensus 318 a~~vl~~~Lg~~~~S~L~~~l~e~-gl~~~~~~~~~~~~~~~~~f~i~~~~--~~~~~~~~~~~~i~~~l~~l~~~g~~~ 394 (995)
T 2fge_A 318 ALGFLDHLMLGTPASPLRKILLES-GLGEALVSSGLSDELLQPQFGIGLKG--VSEENVQKVEELIMDTLKKLAEEGFDN 394 (995)
T ss_dssp HHHHHHHHHHSSTTSHHHHHHHHT-TSCSEECSCEEECSSSSCEEEEEEEE--ECGGGHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhc-CCCcceeeccccccccCeEEEEEEEe--CCHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 345555554 77999999975 899999876 5544444555554443 2466666666666666665553 7999
Q ss_pred HHHHHHHHHHHHHHhccCc--ChH--HHHHHhHHHHhc-CCCCcc-ccHHHHHHHhc-CCHH----HHHHHHHHhh
Q 028703 78 DQFKNNVNALIDMKLEKHK--NLK--EESGFYWREISD-GILKFD-RREVEVAALRQ-LTQQ----ELIYFFNENI 142 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~~~--sl~--~~~~~~w~~I~~-~~~~F~-~~~~~i~~l~~-it~~----dl~~f~~~~~ 142 (205)
++++..|+.+...+.+... +.. ..+..+...+.. ++.... .....++.+.. +|.+ ++.+++++++
T Consensus 395 ~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l 470 (995)
T 2fge_A 395 DAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLI 470 (995)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 9999999999988876442 222 233444333333 233221 11233333332 4447 8999999998
No 19
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=97.79 E-value=0.00035 Score=69.09 Aligned_cols=149 Identities=9% Similarity=0.006 Sum_probs=95.3
Q ss_pred HHHHHHHHchHHHHHhhhccccceEEE-EEEeeeCCeeEEEEEEeCCCC------ChhHH-HHHHHHHHHHHHHHH-hcC
Q 028703 5 LQLLALIAKQPAFHQLRTVEQLGYITA-LLQRNDFGIHGVQFIIQSSVK------GPKYI-DLRVESFLQMFESKL-YEM 75 (205)
Q Consensus 5 ~~Ll~~ils~~~f~~LRTkqQLGYvV~-s~~~~~~~~~gl~~~VQS~~~------~~~~l-~~~i~~Fl~~~~~~L-~~l 75 (205)
..+|..-.++|+|..||. ++|||.|+ +++......+.+.+.+++... +++.+ ....+...+.+.+.. +++
T Consensus 420 ~~iLggg~sSrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi 498 (1193)
T 3s5m_A 420 NNLLIHTPESVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGF 498 (1193)
T ss_dssp HHHHHSSTTSHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCCCHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCC
Confidence 344444458899999996 79999998 777777777778888875321 13344 233344444444444 379
Q ss_pred CHHHHHHHHHHHHHHHhccC----cC--hHHHHHHhHHHHhcCCCC--ccccHHHHHHHhcCC---HHHHHHHHHHhhhc
Q 028703 76 TSDQFKNNVNALIDMKLEKH----KN--LKEESGFYWREISDGILK--FDRREVEVAALRQLT---QQELIYFFNENIKA 144 (205)
Q Consensus 76 s~eeF~~~k~~li~~l~~~~----~s--l~~~~~~~w~~I~~~~~~--F~~~~~~i~~l~~it---~~dl~~f~~~~~~~ 144 (205)
++++++..++.+..++++.. .. +...+...|.. .++.. +.. +..++.|+.-+ ..+|.+.+++||.
T Consensus 499 ~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~--~~dp~~~l~~-~~~l~~l~~~~~~~~~~~~~li~~yll- 574 (1193)
T 3s5m_A 499 NKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNY--NRDPLLIFEF-EKYLNIVKNKIKNEPMYLEKFVEKHFI- 574 (1193)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHT--TCCTTTTTSH-HHHHHHHHHHHHHSTTHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHc--CCCHHHHHHH-HHHHHHHHHHhhcChHHHHHHHHHHhc-
Confidence 99999999999999888742 11 12233344533 33332 223 55666776553 4599999999983
Q ss_pred CCCCccEEEEEEeeCC
Q 028703 145 GAPRKKTLSVRVYGSL 160 (205)
Q Consensus 145 ~~~~~~~l~i~v~~~~ 160 (205)
.+..++.+.+.+..
T Consensus 575 --~n~~~~~~~~~P~~ 588 (1193)
T 3s5m_A 575 --NNAHRSVILLEGDE 588 (1193)
T ss_dssp --TCCCEEEEEEEEES
T ss_pred --cCCceEEEEEEcCC
Confidence 34456777776554
No 20
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=97.68 E-value=0.00014 Score=69.49 Aligned_cols=133 Identities=8% Similarity=-0.070 Sum_probs=84.8
Q ss_pred HHHHHHH----chHHHHHhhhccccceEEEEEEee--eCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-cCCHH
Q 028703 6 QLLALIA----KQPAFHQLRTVEQLGYITALLQRN--DFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-EMTSD 78 (205)
Q Consensus 6 ~Ll~~il----s~~~f~~LRTkqQLGYvV~s~~~~--~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~ls~e 78 (205)
.+++.++ ++++|..|| +++|.|.|+++... ..+.+-+.+.+.......+.+...+..+...+..... +++++
T Consensus 286 ~~l~~lLg~~~~s~L~~~L~-~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~ 364 (939)
T 1q2l_A 286 ELITYLIGNRSPGTLSDWLQ-KQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQ 364 (939)
T ss_dssp HHHHHHHHCCCTTSHHHHHH-HTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhcCCCCCcHHHHHH-HcCCchheeeccccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHH
Confidence 4555554 468999999 67999999998532 2344555666663211113555666666655555443 79999
Q ss_pred HHHHHHHHHHHHHhccC-cChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhh
Q 028703 79 QFKNNVNALIDMKLEKH-KNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENI 142 (205)
Q Consensus 79 eF~~~k~~li~~l~~~~-~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~ 142 (205)
+|++.|+.+...+.... .+....+..+...+... ..+.-......++++|.+++.++.+. +
T Consensus 365 el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~vt~~~i~~~~~~-l 426 (939)
T 1q2l_A 365 YFDELANVLDIDFRYPSITRDMDYVEWLADTMIRV--PVEHTLDAVNIADRYDAKAVKERLAM-M 426 (939)
T ss_dssp HHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTS--CGGGTTTTTTCCCCCCHHHHHHHHHH-C
T ss_pred HHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcC--CHHHHhcCchhhhccCHHHHHHHHHh-c
Confidence 99999999999887544 34444555555554422 22211111235789999999999987 5
No 21
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=97.25 E-value=0.0017 Score=62.31 Aligned_cols=136 Identities=7% Similarity=-0.079 Sum_probs=83.8
Q ss_pred HHHHHHHHHc----hHHHHHhhhccccceEEEEEEee-eCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHH-hcCCH
Q 028703 4 KLQLLALIAK----QPAFHQLRTVEQLGYITALLQRN-DFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKL-YEMTS 77 (205)
Q Consensus 4 ~~~Ll~~ils----~~~f~~LRTkqQLGYvV~s~~~~-~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L-~~ls~ 77 (205)
.+.+++.+|. ...+..|| +++++|.|+|+... ..+.+.+.+.++......+.+...++.+...+.... .++++
T Consensus 301 ~~~~l~~lLg~~~~~sl~~~Lr-~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~ 379 (990)
T 3cww_A 301 PGHYLGHLIGHEGPGSLLSELK-SKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQE 379 (990)
T ss_dssp HHHHHHHHHTCCSTTCHHHHHH-HTTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHhcCCCCCcHHHHHH-HCCCcceeeeccccCCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcH
Confidence 4567777773 35678999 57999999998875 445566666666431111355555555555555444 37999
Q ss_pred HHHHHHHHHHHHHHhcc-CcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHhh
Q 028703 78 DQFKNNVNALIDMKLEK-HKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFNENI 142 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~-~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~~ 142 (205)
++|++.+......+... ..+-...+..+...+.. +..+......+.+.++|.+++.++.+.+.
T Consensus 380 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~i~~~t~~~i~~~~~~l~ 443 (990)
T 3cww_A 380 WVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHY--YPLEEVLTAEYLLEEFRPDLIEMVLDKLR 443 (990)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTT--SCGGGTTTTTTCCCCCCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhh--CCHHHHhccchhhhcCCHHHHHHHHHhcC
Confidence 99999888777766543 23444444444332222 22222112224578999999999998633
No 22
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=97.04 E-value=0.00055 Score=57.56 Aligned_cols=82 Identities=6% Similarity=0.000 Sum_probs=64.7
Q ss_pred chHHHHHHHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 028703 2 NVKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLYEMTSDQFK 81 (205)
Q Consensus 2 ~a~~~Ll~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~~ls~eeF~ 81 (205)
.+.+.+++.++.. .||+++++. |+++.....+.+.+.++++++ +++.+...|.+++.. .++++||+
T Consensus 234 ~~~l~vl~~iLg~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i~~~l~~------~~t~~el~ 299 (352)
T 3cx5_B 234 LAQYEVLANYLTS----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNIKKIVAD------LKKGKDLS 299 (352)
T ss_dssp HHHHHHHHHHHHS----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHHHHHHHH------HHSCEECG
T ss_pred HHHHHHHHHHhCc----chhcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHHHHHHHh------cCCHHHHH
Confidence 4567888888877 899988666 777777777777778888864 688998888877643 27899999
Q ss_pred HHHHHHHHHHhccCcC
Q 028703 82 NNVNALIDMKLEKHKN 97 (205)
Q Consensus 82 ~~k~~li~~l~~~~~s 97 (205)
..|+.++.++...-.+
T Consensus 300 ~ak~~~~~~~~~~~~~ 315 (352)
T 3cx5_B 300 PAINYTKLKNAVQNES 315 (352)
T ss_dssp GGHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999998866555
No 23
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=96.61 E-value=0.088 Score=44.89 Aligned_cols=95 Identities=18% Similarity=0.250 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHH
Q 028703 62 ESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRREVEVAALRQLTQQELIYFFN 139 (205)
Q Consensus 62 ~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~ 139 (205)
+..+.-+.+.+. .+++++|+..|+.++..+.....+-...+.........++..+...- ..+.|+++|.+++.+|++
T Consensus 104 ~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~~~~l~~it~~~l~~f~~ 182 (424)
T 3amj_B 104 NSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-SVATLQKISRDQLVSFHR 182 (424)
T ss_dssp HHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-CHHHHHHCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-CHHHHHhCCHHHHHHHHH
Confidence 444444444443 58999999999999998887666666665555555544332233222 566789999999999999
Q ss_pred HhhhcCCCCccEEEEEEeeCCCC
Q 028703 140 ENIKAGAPRKKTLSVRVYGSLHA 162 (205)
Q Consensus 140 ~~~~~~~~~~~~l~i~v~~~~~~ 162 (205)
+++. ++ ...+.|.|....
T Consensus 183 ~~y~---~~--~~~l~v~Gd~~~ 200 (424)
T 3amj_B 183 THYV---AR--TAVVTLVGDITR 200 (424)
T ss_dssp HHSC---TT--SCEEEEEESCCH
T ss_pred HhcC---CC--ceEEEEEeCCCH
Confidence 9993 22 466777787654
No 24
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=95.80 E-value=0.18 Score=42.81 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=80.4
Q ss_pred hHHHHHHHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHH-h-c---CCH
Q 028703 3 VKLQLLALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKL-Y-E---MTS 77 (205)
Q Consensus 3 a~~~Ll~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L-~-~---ls~ 77 (205)
.+..++.+++..-.=. +.-+.+|-.+.+.... + +..+.+.++.. + ++..+.-+.+.+ . . +++
T Consensus 42 g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~--~--~t~~~~~~~~~---~----l~~~l~ll~~~~~~p~~~~f~~ 108 (431)
T 3cx5_A 42 GVSNLWKNIFLSKENS--AVAAKEGLALSSNISR--D--FQSYIVSSLPG---S----TDKSLDFLNQSFIQQKANLLSS 108 (431)
T ss_dssp THHHHHHHHHTSHHHH--HHHHHTTCEEEEEECS--S--CEEEEEEECST---T----HHHHHHHHHHHHHTCSTTTTCH
T ss_pred chHHHHHHHHhcCCCc--ccHHHcCCeeeeeecC--C--eEEEEEEechh---h----HHHHHHHHHHHHhCcccccCCH
Confidence 4556666666332111 2335677655554432 2 34455554422 2 333443333444 2 3 899
Q ss_pred HHHHHHHHHHHHHHhccCcCh-HHHHHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEE
Q 028703 78 DQFKNNVNALIDMKLEKHKNL-KEESGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVR 155 (205)
Q Consensus 78 eeF~~~k~~li~~l~~~~~sl-~~~~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~ 155 (205)
++|+..|..++..+.....+. ...+.........++-.+.+. .-..+.|+++|.+++.+|+++++. ++ .+.+.
T Consensus 109 ~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~---~~--~~~l~ 183 (431)
T 3cx5_A 109 SNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFL---NS--NAVVV 183 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSC---GG--GEEEE
T ss_pred HHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCC---CC--cEEEE
Confidence 999999999988876543333 444444444443322111111 124567899999999999999992 22 57777
Q ss_pred EeeCCCC
Q 028703 156 VYGSLHA 162 (205)
Q Consensus 156 v~~~~~~ 162 (205)
|.|....
T Consensus 184 v~G~~~~ 190 (431)
T 3cx5_A 184 GTGNIKH 190 (431)
T ss_dssp EEESCCH
T ss_pred EEcCCCH
Confidence 8887654
No 25
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=95.40 E-value=0.18 Score=42.68 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=77.2
Q ss_pred ceEEEEEEeeeCCeeEEEEEEeCCCC----ChhHHHHHHHHHHHHHHHHHh--c-----CCHHHHHHHHHHHHHHHhccC
Q 028703 27 GYITALLQRNDFGIHGVQFIIQSSVK----GPKYIDLRVESFLQMFESKLY--E-----MTSDQFKNNVNALIDMKLEKH 95 (205)
Q Consensus 27 GYvV~s~~~~~~~~~gl~~~VQS~~~----~~~~l~~~i~~Fl~~~~~~L~--~-----ls~eeF~~~k~~li~~l~~~~ 95 (205)
|=.+.+.........++.+.+..... +++.+...++-+. +.+. . +++++|+..|+.+...+....
T Consensus 72 G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~----~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~ 147 (425)
T 3d3y_A 72 GASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLK----EIIFAPNIQAGQFEAETFQREKENLKAYLESIV 147 (425)
T ss_dssp SCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHH----HHHHSCSEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CceEeeeeeecCceEEEEEEEEecChhhccchhHHHHHHHHHH----HHHhCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 65555555555555667777665421 1224444444333 3342 4 799999999999988887655
Q ss_pred cChHHHHHHhHHHHhc-CCCCcccc-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703 96 KNLKEESGFYWREISD-GILKFDRR-EVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH 161 (205)
Q Consensus 96 ~sl~~~~~~~w~~I~~-~~~~F~~~-~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~ 161 (205)
.+-...+......... ++..+.+. ....+.|+++|.+++.+|+++++. ++ .+.+.|.|...
T Consensus 148 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~---~~--~~~l~v~G~~~ 210 (425)
T 3d3y_A 148 EDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLA---ED--QVDIFVLGDVN 210 (425)
T ss_dssp HSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHH---HS--EEEEEEEESCC
T ss_pred hCHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHh---cC--CeEEEEECCCC
Confidence 5555555444444443 22212211 123566889999999999999993 22 57788888765
No 26
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=95.23 E-value=0.24 Score=42.18 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHH
Q 028703 61 VESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYF 137 (205)
Q Consensus 61 i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f 137 (205)
++..+.-+.+.+. .+++++|+..|..++..+.....+-...+...+.....++..+.+. .-..+.|+++|.+++.+|
T Consensus 108 l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f 187 (434)
T 3gwb_A 108 REPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAF 187 (434)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHH
Confidence 4444444444443 6899999999999999988777777666666666555443222221 113456899999999999
Q ss_pred HHHhhhcCCCCccEEEEEEeeCCCC
Q 028703 138 FNENIKAGAPRKKTLSVRVYGSLHA 162 (205)
Q Consensus 138 ~~~~~~~~~~~~~~l~i~v~~~~~~ 162 (205)
+++++ .+ ..+.+.|.|....
T Consensus 188 ~~~~y---~~--~~~~l~v~G~~~~ 207 (434)
T 3gwb_A 188 HAKAY---AA--GNVVIALVGDLSR 207 (434)
T ss_dssp HHHHS---CG--GGEEEEEEESCCH
T ss_pred HHHhc---Cc--CCeEEEEEcCCCH
Confidence 99999 22 3577788887653
No 27
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=94.94 E-value=0.15 Score=43.44 Aligned_cols=122 Identities=7% Similarity=0.061 Sum_probs=74.7
Q ss_pred cccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHH
Q 028703 24 EQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEE 101 (205)
Q Consensus 24 qQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~ 101 (205)
+.+|=.+.+... .+...+.+.+- ++.+ +..+.-+.+.+. .+++++|+..|..++..+.....+-...
T Consensus 69 ~~~G~~~na~t~--~d~t~~~~~~~-----~~~l----~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~ 137 (421)
T 3hdi_A 69 DSIGGQVNAFTS--KEYTCYYAKVL-----DDHA----GQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDI 137 (421)
T ss_dssp HTTTSCEEEEEC--SSCEEEEEEEE-----GGGH----HHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCceeeeec--cceEEEEEEec-----HHHH----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHH
Confidence 456655544444 23334444332 2333 444444444443 5899999999999999888766665555
Q ss_pred HHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703 102 SGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH 161 (205)
Q Consensus 102 ~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~ 161 (205)
+.........++-.+.+. --..+.|+++|.+++.+|+++++. ++ ...+.|.|...
T Consensus 138 ~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~y~---p~--n~~l~v~Gd~~ 193 (421)
T 3hdi_A 138 VHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYT---GD--YVVISVAGNVH 193 (421)
T ss_dssp HHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHHSS---TT--TEEEEEEESCC
T ss_pred HHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHhcC---cc--cEEEEEEeCCC
Confidence 555555544433222221 114567899999999999999993 22 46677778765
No 28
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=94.59 E-value=0.63 Score=39.96 Aligned_cols=124 Identities=9% Similarity=0.105 Sum_probs=75.8
Q ss_pred cccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHh-ccCcChHH
Q 028703 24 EQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY--EMTSDQFKNNVNALIDMKL-EKHKNLKE 100 (205)
Q Consensus 24 qQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~-~~~~sl~~ 100 (205)
+.+|=.+.+.. ..+..++.+.+-+ +.+ +..+.-+.+.+. .+++++|+..+..++..+. ....+-..
T Consensus 74 ~~~g~~~na~t--~~d~t~y~~~~~~-----~~l----~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~ 142 (445)
T 3ami_A 74 AAMGGRDNAFT--TRDYTAYYQQVPS-----SRL----SDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRS 142 (445)
T ss_dssp HHTTCEEEEEE--CSSCEEEEEEEEG-----GGH----HHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHH
T ss_pred HHhCCcccccc--CCCeEEEEEECCH-----HHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHH
Confidence 44675444443 3445555554432 333 344444444443 5899999999999999887 45555555
Q ss_pred HHHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCCCc
Q 028703 101 ESGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHAP 163 (205)
Q Consensus 101 ~~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~~~ 163 (205)
.+...+.....++--+.+. --..+.|+++|.+++.+||++++. ++ ...+.|.|....+
T Consensus 143 ~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~y~---p~--n~~l~vvGd~d~~ 201 (445)
T 3ami_A 143 KAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYG---PN--NATVVVVGDVEHE 201 (445)
T ss_dssp HHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHHCS---GG--GEEEEEEESCCHH
T ss_pred HHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhCC---cc--ceEEEEEcCCCHH
Confidence 5555555544433222221 113567889999999999999993 22 4677777876543
No 29
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=94.56 E-value=0.15 Score=43.38 Aligned_cols=141 Identities=8% Similarity=0.063 Sum_probs=83.6
Q ss_pred HHHHHHHHHch--------HHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh-c
Q 028703 4 KLQLLALIAKQ--------PAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY-E 74 (205)
Q Consensus 4 ~~~Ll~~ils~--------~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~-~ 74 (205)
+..++.+++-. .+.+.| +.+|=.+.+.... +... +.+..+ ++++...++-+ .+.+. .
T Consensus 44 ~ah~lehmlf~Gt~~~~~~~~~~~l---~~~G~~~na~t~~--d~t~--y~~~~~---~~~l~~~l~ll----~d~~~p~ 109 (406)
T 3eoq_A 44 VSHFLEHMVFKGPEDMDALAVNRAF---DRMGAQYNAFTSE--EATV--YYGAVL---PEFAYDLLGLF----AKLLRPA 109 (406)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHH---HHTTCEEEEEECS--SCEE--EEEEEC---GGGHHHHHHHH----HHHTSCC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH---HHhCCCccceecC--CeEE--EEEEec---HHHHHHHHHHH----HHHhcCC
Confidence 44556665532 333444 4567555555443 3333 344432 34444444333 33332 4
Q ss_pred CCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEE
Q 028703 75 MTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYFFNENIKAGAPRKKTLS 153 (205)
Q Consensus 75 ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~ 153 (205)
+++++|+..|..++..+.....+-...+...+.....++..+.+. --..+.|+++|.+++.+|+++++. ++ ...
T Consensus 110 f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y~---p~--n~~ 184 (406)
T 3eoq_A 110 LREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYL---PK--NMV 184 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHCC---GG--GEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhCC---cc--CEE
Confidence 899999999999999888766666666555555544433222221 113456899999999999999993 22 467
Q ss_pred EEEeeCCCCc
Q 028703 154 VRVYGSLHAP 163 (205)
Q Consensus 154 i~v~~~~~~~ 163 (205)
+.|.|....+
T Consensus 185 l~v~Gd~~~~ 194 (406)
T 3eoq_A 185 LAATGRVDFD 194 (406)
T ss_dssp EEEEESCCHH
T ss_pred EEEEcCCCHH
Confidence 7777876543
No 30
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=94.09 E-value=0.44 Score=40.58 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcC-CCCccccHHHHHHHhcCCHHHHHHH
Q 028703 61 VESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDG-ILKFDRREVEVAALRQLTQQELIYF 137 (205)
Q Consensus 61 i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~-~~~F~~~~~~i~~l~~it~~dl~~f 137 (205)
++..+.-+.+.+. .+++++|+..|+.+...+.....+-...+.........+ .|.... ....+.|+++|.+++.+|
T Consensus 116 l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~l~~it~~~l~~f 194 (439)
T 1pp9_B 116 VDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSL-YCPDYRIGKVTPVELHDY 194 (439)
T ss_dssp HHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCS-SCCGGGTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCc-cCCHHHHhhcCHHHHHHH
Confidence 4444444445453 589999999999999988766556555555555554443 122111 113346889999999999
Q ss_pred HHHhhhcCCCCccEEEEEEeeC
Q 028703 138 FNENIKAGAPRKKTLSVRVYGS 159 (205)
Q Consensus 138 ~~~~~~~~~~~~~~l~i~v~~~ 159 (205)
+++++. ++ .+.+.|.|.
T Consensus 195 ~~~~y~---~~--~~~l~v~G~ 211 (439)
T 1pp9_B 195 VQNHFT---SA--RMALIGLGV 211 (439)
T ss_dssp HHHHCS---GG--GEEEEEESS
T ss_pred HHHhCC---CC--ceEEEEeCC
Confidence 999993 22 577778887
No 31
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=94.07 E-value=1 Score=38.43 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHH
Q 028703 61 VESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYF 137 (205)
Q Consensus 61 i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f 137 (205)
++..+.-+.+.+. .+++++|+..|..++..+.....+....+.........++..+.+. --..+.|+++|.+++.+|
T Consensus 100 l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f 179 (443)
T 1hr6_B 100 IPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDY 179 (443)
T ss_dssp HHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHH
Confidence 4444444444453 5899999999999999988776676665555555544433222211 113456889999999999
Q ss_pred HHHhhhcCCCCccEEEEEEeeCCCC
Q 028703 138 FNENIKAGAPRKKTLSVRVYGSLHA 162 (205)
Q Consensus 138 ~~~~~~~~~~~~~~l~i~v~~~~~~ 162 (205)
+++++. ++ .+.+.|.|....
T Consensus 180 ~~~~y~---~~--n~~l~v~Gd~~~ 199 (443)
T 1hr6_B 180 ITKNYK---GD--RMVLAGAGAVDH 199 (443)
T ss_dssp HHHHCC---GG--GEEEEEEESCCH
T ss_pred HHhcCc---CC--CEEEEEEcCCCH
Confidence 999993 22 567778787653
No 32
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=93.96 E-value=0.99 Score=38.73 Aligned_cols=97 Identities=10% Similarity=0.205 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHH
Q 028703 61 VESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYF 137 (205)
Q Consensus 61 i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f 137 (205)
++..+.-+.+.+. .+++++|+..|..+...+.....+....+...+.....++..+.+. --..+.|+++|.+++.+|
T Consensus 106 l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f 185 (446)
T 1pp9_A 106 LPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEY 185 (446)
T ss_dssp HHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHH
Confidence 3344444444442 5899999999999999988776676666555555544333222211 113556789999999999
Q ss_pred HHHhhhcCCCCccEEEEEEeeCCCC
Q 028703 138 FNENIKAGAPRKKTLSVRVYGSLHA 162 (205)
Q Consensus 138 ~~~~~~~~~~~~~~l~i~v~~~~~~ 162 (205)
+++++. ++ ...+.|.|....
T Consensus 186 ~~~~y~---p~--n~~l~v~Gd~~~ 205 (446)
T 1pp9_A 186 LSRHYK---AP--RMVLAAAGGLEH 205 (446)
T ss_dssp HHHHCC---GG--GEEEEEEESCCH
T ss_pred HHhccC---CC--CEEEEEEcCCCH
Confidence 999992 22 467777787653
No 33
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=93.39 E-value=0.26 Score=42.99 Aligned_cols=96 Identities=9% Similarity=0.024 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCcccc-HHHHHHHhcCCHHHHHHH
Q 028703 61 VESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKFDRR-EVEVAALRQLTQQELIYF 137 (205)
Q Consensus 61 i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F~~~-~~~i~~l~~it~~dl~~f 137 (205)
++..+.-+.+.+. .+++++|+..|..++..+.....+....+...+.....++-.+.+. --..+.|+++|.++|.+|
T Consensus 98 l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f 177 (475)
T 1hr6_A 98 VGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDY 177 (475)
T ss_dssp HHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHH
Confidence 4444444444453 5899999999999999988766676776666666655533222211 113356899999999999
Q ss_pred HHHhhhcCCCCccEEEEEEeeCCCC
Q 028703 138 FNENIKAGAPRKKTLSVRVYGSLHA 162 (205)
Q Consensus 138 ~~~~~~~~~~~~~~l~i~v~~~~~~ 162 (205)
+++++. ++ ...+.|.| ...
T Consensus 178 ~~~~y~---p~--n~~l~v~G-~d~ 196 (475)
T 1hr6_A 178 RNKFYT---PE--NTVAAFVG-VPH 196 (475)
T ss_dssp HHHHCC---GG--GEEEEEES-SCH
T ss_pred HHHhCC---cc--cEEEEEeC-CCH
Confidence 999992 22 45666778 543
No 34
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=93.21 E-value=0.15 Score=42.47 Aligned_cols=118 Identities=10% Similarity=-0.010 Sum_probs=68.7
Q ss_pred cccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh--cCCHHHHH-HHHHHHHHHHhccCcChHH
Q 028703 24 EQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY--EMTSDQFK-NNVNALIDMKLEKHKNLKE 100 (205)
Q Consensus 24 qQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~--~ls~eeF~-~~k~~li~~l~~~~~sl~~ 100 (205)
+.+|=.+.+... .+..++.+.+-+ ++ ++..+.-+.+.+. .+++++|+ ..|..++..+.....+...
T Consensus 56 ~~~G~~~na~t~--~~~t~~~~~~~~-----~~----l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~ 124 (352)
T 3cx5_B 56 ELLGGTFKSTLD--REYITLKATFLK-----DD----LPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVK 124 (352)
T ss_dssp HHHTCEEEEEEC--SSCEEEEEEEEG-----GG----HHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHH
T ss_pred HHhCCeEEEEEc--cceEEEEEEech-----hh----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 456755555443 333444443332 23 3444444444442 58999998 8888888887765555554
Q ss_pred HHHHhHHHHhcC-CCCccccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCC
Q 028703 101 ESGFYWREISDG-ILKFDRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLH 161 (205)
Q Consensus 101 ~~~~~w~~I~~~-~~~F~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~ 161 (205)
.+.........+ .|.... ..+.|+++|.+++.+|+++++. ++ ...+.+.| ..
T Consensus 125 ~~~~~~~~~~~~~p~~~~~---~~~~l~~it~~~l~~f~~~~y~---~~--n~~l~v~G-~~ 177 (352)
T 3cx5_B 125 SAEDQLYAITFRKGLGNPL---LYDGVERVSLQDIKDFADKVYT---KE--NLEVSGEN-VV 177 (352)
T ss_dssp HHHHHHHHHHHTTTTTSCS---SCCSSSCCCHHHHHHHHHHHCC---GG--GEEEEEES-SC
T ss_pred HHHHHHHHHHhCCCCCCcc---chhhhccCCHHHHHHHHHHhCC---cC--cEEEEEeC-CC
Confidence 443333333322 222222 1457899999999999999993 22 45566668 54
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=79.87 E-value=1.9 Score=37.90 Aligned_cols=109 Identities=11% Similarity=0.177 Sum_probs=60.4
Q ss_pred CeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHHHHhcCCCCc
Q 028703 39 GIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY--EMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWREISDGILKF 116 (205)
Q Consensus 39 ~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~--~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~~I~~~~~~F 116 (205)
+...+.+ .+++..++.+...++-+ .+.+. .+++++|++.|..++..+.....+.. ...|.....+..-.
T Consensus 112 d~t~y~~--~~~~~~~~~l~~~l~ll----~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 182 (492)
T 3go9_A 112 DFTLYSL--SLPNNRPDLLKDALAWL----SDTAGNLAVSEQTVNAALNTATDPIATFPQNIQ---EPWWRYRLKGSSLI 182 (492)
T ss_dssp SCEEEEE--EECTTCHHHHHHHHHHH----HHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTT---CHHHHHHTTTSTTT
T ss_pred CeEEEEE--ECCCCcHHHHHHHHHHH----HHHHhCCCCCHHHHHHHHHHHHHHHHhcccchh---hHHHHHHhccCCcc
Confidence 4444444 44433445554444433 34443 58999999988765544443332322 23344333322212
Q ss_pred cccHHHHHHHhcCCHHHHHHHHHHhhhcCCCCccEEEEEEeeCCCC
Q 028703 117 DRREVEVAALRQLTQQELIYFFNENIKAGAPRKKTLSVRVYGSLHA 162 (205)
Q Consensus 117 ~~~~~~i~~l~~it~~dl~~f~~~~~~~~~~~~~~l~i~v~~~~~~ 162 (205)
.+.-. .+.|+++|.+|+.+||++++. ++ ...+.|.|.-..
T Consensus 183 ~~~~~-~~~i~~it~~dL~~fy~~~Y~---p~--n~~l~vvGdvd~ 222 (492)
T 3go9_A 183 GHDPG-QPVTQPVDVEKLKQFYQQWYT---PD--AMTLYVVGNVDS 222 (492)
T ss_dssp TCCTT-CCCCSSCCHHHHHHHHHHHCC---GG--GEEEEEEESCCH
T ss_pred cCCCc-hhhhhcCCHHHHHHHHHHhcC---cC--ceEEEEEcCCCH
Confidence 22110 134789999999999999993 22 467777787653
No 36
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=42.29 E-value=13 Score=33.15 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.9
Q ss_pred HHHHHHHchHHHHHhhhccccc
Q 028703 6 QLLALIAKQPAFHQLRTVEQLG 27 (205)
Q Consensus 6 ~Ll~~ils~~~f~~LRTkqQLG 27 (205)
.++..++.+|.|++||-+.|||
T Consensus 53 ~~~~~iI~s~~FqRLr~i~QlG 74 (480)
T 3irh_A 53 QVILDLINSAEVQRLRRIKQLG 74 (480)
T ss_dssp HHHHHHHTSHHHHGGGGSBSST
T ss_pred HHHHHHhcCHHHHhhhhhhccc
Confidence 3677899999999999999998
No 37
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.49 E-value=15 Score=32.04 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.8
Q ss_pred HHHHHHchHHHHHhhhccccce
Q 028703 7 LLALIAKQPAFHQLRTVEQLGY 28 (205)
Q Consensus 7 Ll~~ils~~~f~~LRTkqQLGY 28 (205)
++..++.+|.|++||.+.|||-
T Consensus 23 ~~~~ii~s~~fqRL~~~~Qlg~ 44 (410)
T 2q14_A 23 LLYDIVRHPLLQRLTRIKQVGL 44 (410)
T ss_dssp HHHHHHHSHHHHGGGGSBTTTT
T ss_pred HHHHHHCCHHHHhHhhhhccCC
Confidence 6778999999999999999874
No 38
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=35.77 E-value=1.1e+02 Score=21.16 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=11.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHh
Q 028703 71 KLYEMTSDQFKNNVNALIDMKL 92 (205)
Q Consensus 71 ~L~~ls~eeF~~~k~~li~~l~ 92 (205)
.+..||.++|..++..+...+.
T Consensus 64 N~~kMS~ke~~~~r~aI~eal~ 85 (100)
T 2xrh_A 64 NTDKMTVADFEARQKAVKEALK 85 (100)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 39
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=35.08 E-value=20 Score=32.31 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=20.3
Q ss_pred HHHHHHHchHHHHHhhhccccce
Q 028703 6 QLLALIAKQPAFHQLRTVEQLGY 28 (205)
Q Consensus 6 ~Ll~~ils~~~f~~LRTkqQLGY 28 (205)
.++..++.++.|++||-+.|||-
T Consensus 32 ~~~~riI~s~~FqRLr~i~Qlg~ 54 (528)
T 3u1n_A 32 PLLVRIIDTPQFQRLRYIKQLGG 54 (528)
T ss_dssp HHHHHHHSSHHHHGGGGSBTTGG
T ss_pred HHHHHHhCCHHHhhccCccccCC
Confidence 46678999999999999999983
No 40
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.84 E-value=1.2e+02 Score=21.02 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcChHHHHH---HhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHH
Q 028703 64 FLQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESG---FYWREISDGILKFDRREVEVAALRQLTQQELIYFFNE 140 (205)
Q Consensus 64 Fl~~~~~~L~~ls~eeF~~~k~~li~~l~~~~~sl~~~~~---~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~ 140 (205)
.+..+...| ++++.+.+.++... |.++.+++- ..|..-..+ -. ..-+.++.+|.++.+.|+.+-...
T Consensus 26 dWk~LAr~L-g~s~~~I~~I~~~~-------~~~l~eq~~~mL~~W~~~~g~-~~-Atv~~L~~aL~~~~r~diae~l~~ 95 (118)
T 2of5_H 26 DWPAVALHL-GVSYREVQRIRHEF-------RDDLDEQIRHMLFSWAERQAG-QP-GAVGLLVQALEQSDRQDVAEEVRA 95 (118)
T ss_dssp THHHHHHHT-TCCHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHTTSS-CS-SHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhccCC-CC-cHHHHHHHHHHHcCcHHHHHHHHH
Confidence 344444443 68888877765432 566666544 445543211 12 344789999999999999998888
Q ss_pred hh
Q 028703 141 NI 142 (205)
Q Consensus 141 ~~ 142 (205)
.+
T Consensus 96 ~i 97 (118)
T 2of5_H 96 VL 97 (118)
T ss_dssp HT
T ss_pred HH
Confidence 77
No 41
>2l7k_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium difficile}
Probab=31.06 E-value=40 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHH
Q 028703 58 DLRVESFLQMFESKLYEMTSDQFKNN 83 (205)
Q Consensus 58 ~~~i~~Fl~~~~~~L~~ls~eeF~~~ 83 (205)
...+.+.-......|..||+++|+..
T Consensus 35 D~eMr~La~~tl~KL~~MTDaefael 60 (76)
T 2l7k_A 35 DEDMRELAKRTLAKIAPLTENEYAEL 60 (76)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 34444555556667788888888875
No 42
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=27.98 E-value=30 Score=29.50 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.1
Q ss_pred HHHHHHHchHHHHHhhhccccce
Q 028703 6 QLLALIAKQPAFHQLRTVEQLGY 28 (205)
Q Consensus 6 ~Ll~~ils~~~f~~LRTkqQLGY 28 (205)
..+..++++|.|+.||...|||-
T Consensus 17 ~~~~~ii~s~~fqRLr~i~QlG~ 39 (371)
T 2hek_A 17 EAGLRLIDSFPFQRLRYVKQLGL 39 (371)
T ss_dssp HHHHHHHTSHHHHGGGGSBTTTT
T ss_pred hHHHHHhCCHHHhCccccCccCc
Confidence 35678999999999999999983
No 43
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=24.56 E-value=1.4e+02 Score=20.46 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHHHHHhccCcChHHHHH---HhHHHHhcCCCCccccHHHHHHHhcCCHHHHHHHHHHh
Q 028703 74 EMTSDQFKNNVNALIDMKLEKHKNLKEESG---FYWREISDGILKFDRREVEVAALRQLTQQELIYFFNEN 141 (205)
Q Consensus 74 ~ls~eeF~~~k~~li~~l~~~~~sl~~~~~---~~w~~I~~~~~~F~~~~~~i~~l~~it~~dl~~f~~~~ 141 (205)
++++.+.+.++. +.|.++.+++- ..|..-.... -..+.++.+|.++.+.|+.+-....
T Consensus 40 g~s~~~I~~I~~-------~~p~~~~eq~~~mL~~W~~~~g~~---AT~~~L~~aL~~i~r~diae~l~~~ 100 (111)
T 2yqf_A 40 QFSVEDINRIRV-------ENPNSLLEQSVALLNLWVIREGQN---ANMENLYTALQSIDRGEIVNMLEGS 100 (111)
T ss_dssp TCCHHHHHHHHH-------HSCSCHHHHHHHHHHHHHHHHTTS---CCHHHHHHHHHHTTCCHHHHHHSCC
T ss_pred CCCHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHhhCCC---chHHHHHHHHHHcCcHHHHHHHHHh
Confidence 577777766552 23567766544 5566553222 2457899999999999998777543
No 44
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=24.22 E-value=26 Score=30.89 Aligned_cols=80 Identities=11% Similarity=-0.056 Sum_probs=40.0
Q ss_pred HHHHchHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHH-HHHHHh-cCCHHHHHHHH--
Q 028703 9 ALIAKQPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQM-FESKLY-EMTSDQFKNNV-- 84 (205)
Q Consensus 9 ~~ils~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~-~~~~L~-~ls~eeF~~~k-- 84 (205)
..|+.++.|+.||-+.|+|-.++.+....+=+- +-.+.+|...|-.-|.. +...+. .++++++....
T Consensus 34 ~rii~s~~frRL~~~tQv~~~~~~~~~htR~~H---------sl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~ 104 (451)
T 2pgs_A 34 DRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTH---------SLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQS 104 (451)
T ss_dssp HHHHHSHHHHGGGGCCCCCC-------CCHHHH---------HHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHH
T ss_pred HHHhCCHHHhhhccCCcccCCCCCCCcccHHHH---------HHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHH
Confidence 458999999999999999976422211110000 01133344443333322 111111 35667775443
Q ss_pred HHHHHHHhccCcC
Q 028703 85 NALIDMKLEKHKN 97 (205)
Q Consensus 85 ~~li~~l~~~~~s 97 (205)
.+|.-.+-.+|-+
T Consensus 105 a~L~HDiGH~PFg 117 (451)
T 2pgs_A 105 ACLAHDIGNPPFG 117 (451)
T ss_dssp HHHHTTTTCCTTH
T ss_pred HHHhhccCCCCcc
Confidence 4677777777744
No 45
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=24.07 E-value=77 Score=20.12 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhccCcChHHHHHHhHH
Q 028703 65 LQMFESKLYEMTSDQFKNNVNALIDMKLEKHKNLKEESGFYWR 107 (205)
Q Consensus 65 l~~~~~~L~~ls~eeF~~~k~~li~~l~~~~~sl~~~~~~~w~ 107 (205)
+..|.+.+..||.|+-.++.--+..++.-++.-+..-.+.-|+
T Consensus 15 L~~~~~qv~~ls~EQaqe~Lve~~rQmMikeN~~k~liK~~w~ 57 (65)
T 1ojh_A 15 IRSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWG 57 (65)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3557788899999998888777777777666555555555554
No 46
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=23.38 E-value=1.2e+02 Score=17.76 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=13.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcC
Q 028703 52 KGPKYIDLRVESFLQMFESKLYEM 75 (205)
Q Consensus 52 ~~~~~l~~~i~~Fl~~~~~~L~~l 75 (205)
.++.++..-=++.|.+++..|..|
T Consensus 4 ~~~~dle~~KqEIL~E~RkElqK~ 27 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKELQKV 27 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666666554444
No 47
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=22.90 E-value=1e+02 Score=26.49 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccC----cChHHHHHHhHH
Q 028703 62 ESFLQMFESKLYEMTSDQFKNNVNALIDMKLEKH----KNLKEESGFYWR 107 (205)
Q Consensus 62 ~~Fl~~~~~~L~~ls~eeF~~~k~~li~~l~~~~----~sl~~~~~~~w~ 107 (205)
-.||.+++..|+.+++++|.+....+...+.+-- -...++|-.+|+
T Consensus 314 vlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 314 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 4688999999999999999999887766655432 235677777775
No 48
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=20.49 E-value=1e+02 Score=21.29 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=35.5
Q ss_pred hHHHHHhhhccccceEEEEEEeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh
Q 028703 14 QPAFHQLRTVEQLGYITALLQRNDFGIHGVQFIIQSSVKGPKYIDLRVESFLQMFESKLY 73 (205)
Q Consensus 14 ~~~f~~LRTkqQLGYvV~s~~~~~~~~~gl~~~VQS~~~~~~~l~~~i~~Fl~~~~~~L~ 73 (205)
+..+..|++=+..||+.........+...+.+.. ..+..+...|...+..+...+.
T Consensus 57 sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~----~~~~~~~~~i~~~~~~~~~~~~ 112 (123)
T 3r0a_A 57 STVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKI----YSKNQIRNIIQKIVQSWADRLG 112 (123)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeCCccCCCcceEEEec----CCHHHHHHHHHHHHHHHHHHHH
Confidence 4677778887889999876543322222222222 3578888888888877766553
Done!