BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028704
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1
          Length = 198

 Score =  225 bits (574), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/212 (63%), Positives = 158/212 (74%), Gaps = 21/212 (9%)

Query: 1   MAEEQVKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQ------LHDQEKPVDD 54
           MAE + KKVE   PA PAP P  AP          VA+EKA+          ++EKP DD
Sbjct: 1   MAELEAKKVEIVDPAPPAPGPVEAP-------KEVVADEKAIVAPALPPPAEEKEKP-DD 52

Query: 55  SKALAVVD-QTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAEN 113
           SKAL VV+ + P+ A      ++K  GS DRD  LA V  EKR S IKAWEESEK+KAEN
Sbjct: 53  SKALVVVETKAPEPA------DEKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAEN 106

Query: 114 KAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMV 173
           KAQKK+SA+ AWENSKKA+LEA+LKK+EEQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+
Sbjct: 107 KAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMI 166

Query: 174 EARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct: 167 EAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198


>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana
           GN=At3g61260 PE=1 SV=1
          Length = 212

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 135/171 (78%), Gaps = 6/171 (3%)

Query: 35  DVAEEKAVTQLHDQEKPVDDSKALAVVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKE 94
           DVAEEK   Q    E+  DDSKAL VV++  +      +  K  S S DRDV LA++ KE
Sbjct: 48  DVAEEK--IQNPPPEQIFDDSKALTVVEKPVEEP----APAKPASASLDRDVKLADLSKE 101

Query: 95  KRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEK 154
           KR SF++AWEESEK+KAENKA+KK++ V AWENSKKA++EA+LKKIEEQLE+KKAEYAE+
Sbjct: 102 KRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAER 161

Query: 155 MKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 205
           MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct: 162 MKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212


>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1
          Length = 190

 Score =  191 bits (486), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 154/206 (74%), Gaps = 17/206 (8%)

Query: 1   MAEEQ-VKKVEAETPAAPAPAPALAPAPAPAVPNNDVAEEKAVTQLHDQEKPVDDSKALA 59
           MAEEQ   KV+ E+PA  APA    PAP       +VA+EK    +H+   P  +SKALA
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPAPV------EVADEK----IHNP--PPVESKALA 48

Query: 60  VVDQTPDSAKKKISGEKKISGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKL 119
           VV++  +    K    K  SGS DRDV LA++EKEK+ SFIKAWEESEK+KAEN+AQKK+
Sbjct: 49  VVEKPIEEHTPK----KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKI 104

Query: 120 SAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGE 179
           S V AWENSKKA++EA+L+KIEE+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE
Sbjct: 105 SDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGE 164

Query: 180 DVLKAEEIAAKYRATGTTPKKLLGCF 205
           ++LKAEE+ AKYRATG  PK   GCF
Sbjct: 165 ELLKAEEMGAKYRATGVVPKATCGCF 190


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.303    0.119    0.312 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,981,424
Number of Sequences: 539616
Number of extensions: 3049081
Number of successful extensions: 35707
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 2377
Number of HSP's that attempted gapping in prelim test: 26919
Number of HSP's gapped (non-prelim): 7935
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 58 (26.9 bits)