Query 028704
Match_columns 205
No_of_seqs 139 out of 220
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 02:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 65.5 59 0.002 27.1 13.3 6 200-205 200-205 (256)
2 3oja_B Anopheles plasmodium-re 26.4 3.5E+02 0.012 24.2 11.9 46 153-198 540-585 (597)
3 3ljm_A Coil Ser L9C; de novo d 25.0 89 0.003 18.8 3.4 22 124-145 2-25 (31)
4 2eqb_B RAB guanine nucleotide 20.8 2.7E+02 0.0092 20.9 11.6 38 125-162 37-74 (97)
5 3mq9_A Bone marrow stromal ant 18.0 4.9E+02 0.017 22.7 15.1 96 80-177 367-470 (471)
6 3lvh_D LCB, clathrin light cha 17.3 3.3E+02 0.011 23.1 6.6 50 99-148 101-150 (205)
7 2e7s_A RAB guanine nucleotide 14.6 3.3E+02 0.011 21.5 5.6 38 125-162 57-94 (135)
8 3pzp_A DNA polymerase kappa; D 13.2 4.3E+02 0.015 24.4 6.9 19 129-147 67-85 (517)
9 2ocy_A RAB guanine nucleotide 13.1 5.2E+02 0.018 20.6 8.0 38 125-162 69-106 (154)
10 3viq_A SWI5-dependent recombin 12.8 4.7E+02 0.016 20.0 7.9 61 128-188 7-67 (122)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.46 E-value=59 Score=27.12 Aligned_cols=6 Identities=50% Similarity=1.043 Sum_probs=4.8
Q ss_pred CCCCCC
Q 028704 200 KLLGCF 205 (205)
Q Consensus 200 s~~gCF 205 (205)
.|.|||
T Consensus 200 ~C~GC~ 205 (256)
T 3na7_A 200 ACGGCF 205 (256)
T ss_dssp BCTTTC
T ss_pred ccCCCC
Confidence 388998
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.41 E-value=3.5e+02 Score=24.21 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCCC
Q 028704 153 EKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTP 198 (205)
Q Consensus 153 EKm~NKiA~a~kkAEekRA~aeakr~ee~~Ka~EkA~k~R~TGk~P 198 (205)
+.+++++..+.+.-++++.....-+.+-.....+.-..+..+..-|
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4445667777777777776665555444444455555555555554
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.99 E-value=89 Score=18.80 Aligned_cols=22 Identities=50% Similarity=0.863 Sum_probs=12.4
Q ss_pred HHHHhHH--HHHHHHHHHHHHHHH
Q 028704 124 AWENSKK--ASLEAKLKKIEEQLE 145 (205)
Q Consensus 124 aWEn~qK--AKAEA~mrKiE~KLE 145 (205)
.||.+.| +..+.+|+-+|.+||
T Consensus 2 ewealekkcaalesklqalekkle 25 (31)
T 3ljm_A 2 EWEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3665544 345566666666655
No 4
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.82 E-value=2.7e+02 Score=20.85 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028704 125 WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALV 162 (205)
Q Consensus 125 WEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a 162 (205)
=|..++..||....+|+..||-.=+.+.+.-.+=++.+
T Consensus 37 eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 37 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999887777766
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=18.01 E-value=4.9e+02 Score=22.71 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=48.5
Q ss_pred CCcchhhHHHHHHHHHHHHhHHhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 028704 80 GSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASL-----EAKLKKIEEQLERKKAEYAEK 154 (205)
Q Consensus 80 gs~~rd~~l~~v~~ekr~S~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKA-----EA~mrKiE~KLEkkRA~a~EK 154 (205)
|..+.+..|..+...-....-..+.+.|......=+||...+.+. |...+.+ ..-.--+..-||++.+....|
T Consensus 367 G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (471)
T 3mq9_A 367 GRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQK--GFQDVEAQAATANHTVMALMASLDAEKAQGQKK 444 (471)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhh--hHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 444555566555444333333334444433333333333333321 2222222 222334456677777765544
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHh
Q 028704 155 MK---NKVALVHKEAEEKRAMVEARR 177 (205)
Q Consensus 155 m~---NKiA~a~kkAEekRA~aeakr 177 (205)
++ |.|...+++-++.+|.++..|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 777777777777777776654
No 6
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=17.28 E-value=3.3e+02 Score=23.05 Aligned_cols=50 Identities=22% Similarity=0.416 Sum_probs=32.5
Q ss_pred hHHhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 028704 99 FIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKK 148 (205)
Q Consensus 99 ~a~AWEeaEkaK~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkR 148 (205)
.|..|-+..+..+..|-...+.+-..|...-+.-.+-+......+|+|-+
T Consensus 101 sIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~k 150 (205)
T 3lvh_D 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 150 (205)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777767777777766666666666666655555544
No 7
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=14.57 E-value=3.3e+02 Score=21.47 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028704 125 WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALV 162 (205)
Q Consensus 125 WEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a 162 (205)
=|..++..||....+++..||-.=+.+.+.-.+=++.+
T Consensus 57 eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a 94 (135)
T 2e7s_A 57 KENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADA 94 (135)
T ss_dssp HTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999887777666
No 8
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=13.20 E-value=4.3e+02 Score=24.40 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028704 129 KKASLEAKLKKIEEQLERK 147 (205)
Q Consensus 129 qKAKAEA~mrKiE~KLEkk 147 (205)
+..+++.++.++..+||..
T Consensus 67 ~~~~~~~~~~~~~~~le~~ 85 (517)
T 3pzp_A 67 QLRKAQLQVDRFAMELEQS 85 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444443
No 9
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=13.06 E-value=5.2e+02 Score=20.64 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=32.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028704 125 WENSKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALV 162 (205)
Q Consensus 125 WEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a 162 (205)
=|..++..||....+++.+||-.=+.+.+.-.+=++.+
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 106 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 106 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778889999999999999999999999887777665
No 10
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=12.81 E-value=4.7e+02 Score=19.96 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 028704 128 SKKASLEAKLKKIEEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIA 188 (205)
Q Consensus 128 ~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NKiA~a~kkAEekRA~aeakr~ee~~Ka~EkA 188 (205)
.++.....+|+.++.+|+..+....=.-.|+...+...=..+|.....--.+=...+.++.
T Consensus 7 ~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv 67 (122)
T 3viq_A 7 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERI 67 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999998887776666777777777777777766554444444444443
Done!