Query 028704
Match_columns 205
No_of_seqs 139 out of 220
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 02:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028704.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028704hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dfup_ b.53.1.1 (P:) Ribosoma 8.9 24 0.0017 23.9 -0.8 18 186-203 15-32 (94)
2 d1oaoc_ e.26.1.3 (C:) Bifuncti 8.8 48 0.0035 30.5 1.0 9 54-62 380-388 (729)
3 d2d4ca1 a.238.1.1 (A:11-247) E 8.4 3.2E+02 0.024 19.0 8.8 49 110-158 150-198 (237)
4 d2dloa1 g.39.1.3 (A:8-42) Thyr 6.2 35 0.0025 20.0 -0.9 13 191-205 23-35 (35)
5 d1zl8a1 a.194.1.1 (A:4-53) Lin 4.1 3.4E+02 0.024 16.5 2.8 23 178-200 3-25 (50)
6 d1t92a_ d.24.1.3 (A:) Pullulan 3.8 5.6E+02 0.041 16.9 4.3 22 128-149 6-27 (108)
7 d2azea1 e.63.1.1 (A:199-346) T 3.6 7.3E+02 0.053 17.8 5.1 29 133-161 7-35 (148)
8 d2clyb1 f.53.1.1 (B:4-123) ATP 3.5 4.4E+02 0.032 18.1 3.5 11 137-147 108-118 (120)
9 d1tnsa_ a.6.1.7 (A:) mu transp 3.1 4.2E+02 0.03 17.0 2.8 20 185-205 56-75 (76)
10 d1y74a1 a.194.1.1 (A:17-73) Li 3.1 4.2E+02 0.031 16.4 2.6 21 178-198 4-24 (57)
No 1
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=8.85 E-value=24 Score=23.90 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=14.0
Q ss_pred HHHHHHhhcCCCCCCCCC
Q 028704 186 EIAAKYRATGTTPKKLLG 203 (205)
Q Consensus 186 EkA~k~R~TGk~P~s~~g 203 (205)
-.+.++|+.|.+|.-+.|
T Consensus 15 ~~~r~lRr~G~vPaViYG 32 (94)
T d1dfup_ 15 GASRRLRAANKFPAIIYG 32 (94)
T ss_dssp HHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHcCCccEEEEC
Confidence 347799999999976554
No 2
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=8.76 E-value=48 Score=30.51 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=4.8
Q ss_pred CCCceeecc
Q 028704 54 DSKALAVVD 62 (205)
Q Consensus 54 ~sk~l~~v~ 62 (205)
.+-+|.++.
T Consensus 380 ~~~Plgi~v 388 (729)
T d1oaoc_ 380 SKLPLGILV 388 (729)
T ss_dssp EECCEEEEE
T ss_pred CccceEEEE
Confidence 455666653
No 3
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.37 E-value=3.2e+02 Score=19.02 Aligned_cols=49 Identities=12% Similarity=0.073 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028704 110 KAENKAQKKLSAVAAWENSKKASLEAKLKKIEEQLERKKAEYAEKMKNK 158 (205)
Q Consensus 110 K~~nR~~reeakI~aWEn~qKAKAEA~mrKiE~KLEkkRA~a~EKm~NK 158 (205)
+....|........++.+.....++.+|+..+.+++..+..+...|.+=
T Consensus 150 ~~rk~~d~~~~~~~~~~~k~~~~~~e~l~~a~~~~e~~~~~~~~~l~~l 198 (237)
T d2d4ca1 150 HHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNL 198 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666778889999999999998888888753
No 4
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.15 E-value=35 Score=19.98 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=7.0
Q ss_pred HhhcCCCCCCCCCCC
Q 028704 191 YRATGTTPKKLLGCF 205 (205)
Q Consensus 191 ~R~TGk~P~s~~gCF 205 (205)
+|++|+.= --+||
T Consensus 23 LrA~Gk~y--HP~CF 35 (35)
T d2dloa1 23 LRAMGKAY--HPGCF 35 (35)
T ss_dssp EEETTEEE--CTTTC
T ss_pred HHHhCCCC--CCCCC
Confidence 46777651 12676
No 5
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.08 E-value=3.4e+02 Score=16.55 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCC
Q 028704 178 GEDVLKAEEIAAKYRATGTTPKK 200 (205)
Q Consensus 178 ~ee~~Ka~EkA~k~R~TGk~P~s 200 (205)
..++.++-|--.++.++|.+|..
T Consensus 3 ~rDv~RaieLle~Lq~sgevp~~ 25 (50)
T d1zl8a1 3 ERDVQRILELMEHVQKTGEVNNA 25 (50)
T ss_dssp HHHHHHHHHHHHHHGGGSSSTHH
T ss_pred hhHHHHHHHHHHHHHHcCCCChH
Confidence 34677888889999999999853
No 6
>d1t92a_ d.24.1.3 (A:) Pullulanase secretion protein PulG {Klebsiella pneumoniae [TaxId: 573]}
Probab=3.78 E-value=5.6e+02 Score=16.91 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 028704 128 SKKASLEAKLKKIEEQLERKKA 149 (205)
Q Consensus 128 ~qKAKAEA~mrKiE~KLEkkRA 149 (205)
-+..+|.++|+.|+.-|+.-|.
T Consensus 6 Ak~~~a~~di~~i~~aL~~Y~~ 27 (108)
T d1t92a_ 6 ADRQKVVSDLVALEGALDMYKL 27 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888877776554
No 7
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.63 E-value=7.3e+02 Score=17.84 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028704 133 LEAKLKKIEEQLERKKAEYAEKMKNKVAL 161 (205)
Q Consensus 133 AEA~mrKiE~KLEkkRA~a~EKm~NKiA~ 161 (205)
.+.+..+....+++|++.+.|=+...++.
T Consensus 7 Le~E~~~~~erI~~K~~~LqeLi~Q~iaf 35 (148)
T d2azea1 7 LEVERQRRLERIKQKQSQLQELILQQIAF 35 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666555555543
No 8
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.53 E-value=4.4e+02 Score=18.07 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 028704 137 LKKIEEQLERK 147 (205)
Q Consensus 137 mrKiE~KLEkk 147 (205)
|..++.+|+++
T Consensus 108 I~~lekeLe~i 118 (120)
T d2clyb1 108 IQEYEKELEKM 118 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444444
No 9
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=3.14 E-value=4.2e+02 Score=16.96 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=12.6
Q ss_pred HHHHHHHhhcCCCCCCCCCCC
Q 028704 185 EEIAAKYRATGTTPKKLLGCF 205 (205)
Q Consensus 185 ~EkA~k~R~TGk~P~s~~gCF 205 (205)
+-.+..+.+.|.+-.+ .|||
T Consensus 56 ~~q~~l~~~~~~~~~s-~~~f 75 (76)
T d1tnsa_ 56 EAKAALLLRQGEIETS-LGYF 75 (76)
T ss_dssp HHHHHHHHHTSSCSSS-STTC
T ss_pred HHHHHHHHhccccccc-cccc
Confidence 3455566677777555 5787
No 10
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.08 E-value=4.2e+02 Score=16.45 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhcCCCC
Q 028704 178 GEDVLKAEEIAAKYRATGTTP 198 (205)
Q Consensus 178 ~ee~~Ka~EkA~k~R~TGk~P 198 (205)
..++.++-|--.++.++|.+|
T Consensus 4 ~rDv~RaieLle~LQ~~gevp 24 (57)
T d1y74a1 4 ERDVSRAVELLERLQRSGELP 24 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHHcCCCC
Done!