BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028705
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZWI7|RER1C_ARATH Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1
Length = 212
Score = 257 bits (657), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/192 (65%), Positives = 155/192 (80%), Gaps = 3/192 (1%)
Query: 13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
+D SS S+SP A++R + S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+
Sbjct: 22 DDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVE 81
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
GFYIITY +GIYLLNL++ FLSPQ DPE S G +LPTR SDE+RPFVRRLPEFKFW
Sbjct: 82 GFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLS 141
Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 190
+ R+F IGF++TFF FDVPVFWPILLFYW+MLF LTMR+QI HMIKYRYVPFS GK++Y
Sbjct: 142 IIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY 201
Query: 191 DGKRPSSSDATS 202
GK+P+ ++++
Sbjct: 202 -GKKPAPTESSE 212
>sp|O48670|RER1A_ARATH Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1
Length = 191
Score = 254 bits (650), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/188 (63%), Positives = 143/188 (76%), Gaps = 3/188 (1%)
Query: 16 SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
S S S + + + R YQH LDK+ PH +RW+ L V IY +RVY +QGFY
Sbjct: 3 ESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFY 62
Query: 76 IITYGLGIYLLNLLMGFLSPQIDPE---YSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVT 132
II YGLGIYLLNLL+GFLSP +DPE SDGP+LPTRGSDEF+PF+RRLPEFKFWY +T
Sbjct: 63 IIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMT 122
Query: 133 RSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDG 192
++FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIKY+Y+PFS GKQ+Y G
Sbjct: 123 KAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYGG 182
Query: 193 KRPSSSDA 200
+ S S A
Sbjct: 183 RSSSGSRA 190
>sp|O48671|RER1B_ARATH Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2
Length = 195
Score = 247 bits (631), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 114/191 (59%), Positives = 144/191 (75%), Gaps = 2/191 (1%)
Query: 16 SSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFY 75
S S S + + + R YQ+ LDK+ PH +RW+ L IY +RVY + GFY
Sbjct: 3 GSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFY 62
Query: 76 IITYGLGIYLLNLLMGFLSPQIDPEY--SDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTR 133
II+YGLGIYLLNLL+GFLSP +DPE SDG TLPTRGSDEF+PF+RRLPEFKFWY +T+
Sbjct: 63 IISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTK 122
Query: 134 SFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGK 193
+FCI F++TFFS FDVPVFWPILL YW++LF LTMRRQI HMIK++Y+PFS+GKQ+Y G+
Sbjct: 123 AFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGR 182
Query: 194 RPSSSDATSSE 204
+ S++ S
Sbjct: 183 KSSANSGGGSR 193
>sp|A5PJ65|RER1_BOVIN Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2
Length = 196
Score = 213 bits (542), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 134/195 (68%), Gaps = 4/195 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS PH RWVV L + IY +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 QRYDGKRPSSSDATS 202
+ Y GK + S
Sbjct: 182 RTYKGKEDAGKAFAS 196
>sp|Q5R5U4|RER1_PONAB Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1
Length = 196
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/195 (51%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 QRYDGKRPSSSDATS 202
+RY GK + S
Sbjct: 182 RRYRGKEDAGKAFAS 196
>sp|O15258|RER1_HUMAN Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1
Length = 196
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/195 (51%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + V TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 QRYDGKRPSSSDATS 202
+RY GK + S
Sbjct: 182 RRYRGKEDAGKAFAS 196
>sp|Q498C8|RER1_RAT Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1
Length = 196
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 133/187 (71%), Gaps = 4/187 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 QRYDGKR 194
+RY GK
Sbjct: 182 RRYKGKE 188
>sp|Q9CQU3|RER1_MOUSE Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1
Length = 196
Score = 211 bits (536), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 133/187 (71%), Gaps = 4/187 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RWVV L + +Y +RVYL+
Sbjct: 2 SEGDSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPT+ ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHAATKGILVAMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 QRYDGKR 194
+RY GK
Sbjct: 182 RRYKGKE 188
>sp|Q5ZHM5|RER1_CHICK Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1
Length = 196
Score = 209 bits (533), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 132/187 (70%), Gaps = 4/187 (2%)
Query: 12 AEDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLV 71
+E S S + + R+ + + YQ LDKS P+ RW+V L + IY +RVYL+
Sbjct: 2 SEGDSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLL 61
Query: 72 QGFYIITYGLGIYLLNLLMGFLSPQIDP----EYSDGPTLPTRGSDEFRPFVRRLPEFKF 127
QG+YI+TY LGIY LNL + FLSP++DP + DGP+LPTR ++EFRPF+RRLPEFKF
Sbjct: 62 QGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKF 121
Query: 128 WYCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK 187
W+ T+ + TFF AF+VPVFWPIL+ Y++MLF +TM+RQI HMIKYRY+PF+ GK
Sbjct: 122 WHSATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGK 181
Query: 188 QRYDGKR 194
++Y GK
Sbjct: 182 RKYKGKE 188
>sp|Q9ZPV7|RER1D_ARATH Protein RER1D OS=Arabidopsis thaliana GN=At2g18240 PE=2 SV=2
Length = 221
Score = 206 bits (525), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 142/215 (66%), Gaps = 22/215 (10%)
Query: 13 EDFSSSSSSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
E S + + T + +++W+ S+ +Q+ LD+S P+++ RW+V L IY RVY V
Sbjct: 4 EPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVY 63
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQIDPEYS--DGPTLPTRGSDEFRPFVRRLPEFKFWYC 130
G+++I+YGL Y+LNLL+GFLSP++DPE D +LP SDE++PFVRRLPEFKFWY
Sbjct: 64 GYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYA 123
Query: 131 VTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGK--- 187
T++F + FV+TFFS DVPVFWPILL YWL+L++LTM+R I+HM KYRY PF + K
Sbjct: 124 ATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKPVK 183
Query: 188 ---------------QRYDG--KRPSSSDATSSED 205
++ DG RPSSS+++ +
Sbjct: 184 LLKFLVNSVLTFLRLKKGDGGDDRPSSSNSSQGNE 218
>sp|P25560|RER1_YEAST Protein RER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RER1 PE=1 SV=2
Length = 188
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 5/182 (2%)
Query: 14 DFSSSSSSTSPTAAISRWKYNVSRR-YQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQ 72
D+ SS + ++ K N + YQH LDK PH RW V ++ ++ VR+ + +
Sbjct: 2 DYDSSDTMNGGSSNPLITKMNTMKLLYQHYLDKVTPHAKERWAVLGGLLCLFMVRITMAE 61
Query: 73 GFYIITYGLGIYLLNLLMGFLSPQID----PEYSDGPTLPTRGSDEFRPFVRRLPEFKFW 128
G+Y+I YGLG++LLN + FL+P+ D + + S+EFRPF+RRLPEFKFW
Sbjct: 62 GWYVICYGLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFW 121
Query: 129 YCVTRSFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQ 188
Y R+ I +L+ FS FD+PVFWPILL Y+++LF LTMRRQI HMIKYRY+P +GK+
Sbjct: 122 YNSIRATVISLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDIGKK 181
Query: 189 RY 190
+Y
Sbjct: 182 KY 183
>sp|P52879|RER1_CAEEL Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=3 SV=1
Length = 191
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 122/175 (69%), Gaps = 5/175 (2%)
Query: 29 SRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNL 88
SR+ +++ +YQ+ LD+ PH RWV+ L + +A R+ L+QGFYI+ Y +GIY LNL
Sbjct: 13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNL 72
Query: 89 LMGFLSPQIDP-----EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTF 143
+ FL+P IDP + DGP LP++ +DEFRPF+RRLPEFKFW+ ++ I TF
Sbjct: 73 FLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTF 132
Query: 144 FSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRYDGKRPSSS 198
F FDVPVFWPIL+ Y+ +L LT++RQIMHMIKYRY+PF++GK R GK +
Sbjct: 133 FEFFDVPVFWPILVMYFFILTFLTLKRQIMHMIKYRYIPFTVGKPRMAGKEDTGK 187
>sp|P79003|RER1_SACPS Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1
Length = 188
Score = 177 bits (450), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
Query: 20 SSTSPTAAISRWKYNVSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITY 79
+ S A I++ + YQH LDK PH RW V ++ ++ VR+ + +G+Y+I Y
Sbjct: 10 NGASSNALIAKMN-SAKLLYQHYLDKVTPHAKQRWAVLGGLLCLFMVRITMAEGWYVICY 68
Query: 80 GLGIYLLNLLMGFLSPQID----PEYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSF 135
GLG++LLN + FL+P+ D + + S+EFRPF+RRLPEFKFWY R+
Sbjct: 69 GLGLFLLNQFLAFLTPKFDMSLQQDEENNELEAGEKSEEFRPFIRRLPEFKFWYNSIRAT 128
Query: 136 CIGFVLTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 190
I VL+ FS FD+PVFWPILL Y+++LF LTMRRQI HM+KYRY+P +GK++Y
Sbjct: 129 VISLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDIGKKKY 183
>sp|Q10358|RER1_SCHPO Protein rer1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rer1 PE=3 SV=1
Length = 184
Score = 170 bits (431), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 111/162 (68%), Gaps = 8/162 (4%)
Query: 37 RRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFLSPQ 96
R Y+H +D+++P+ +RW+ +++++ +R+ LV+G+YI+ Y L IYLLNL + FL+P+
Sbjct: 20 RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPK 79
Query: 97 IDP--------EYSDGPTLPTRGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFD 148
DP E + LPT DEFRPF+RRLPEFKFWY R+ V +FF FD
Sbjct: 80 FDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFD 139
Query: 149 VPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 190
VPVFWPIL+ Y+L+L RRQI HM+KYRYVPF +GK+++
Sbjct: 140 VPVFWPILVVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKKKF 181
>sp|Q54D10|RER1_DICDI Protein RER1 homolog OS=Dictyostelium discoideum GN=rer1 PE=3 SV=1
Length = 188
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 113/162 (69%), Gaps = 6/162 (3%)
Query: 35 VSRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQG-FYIITYGLGIYLLNLLMGFL 93
++R+YQ+L++K++ + RW + +Y +RV L G +Y+ITY LGI+LL + FL
Sbjct: 22 IARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFIAFL 81
Query: 94 SPQIDPEYSD--GPTLPT---RGSDEFRPFVRRLPEFKFWYCVTRSFCIGFVLTFFSAFD 148
SP+ DPE + G +LPT R DE +PF+RRLPEF FW+ + ++ I TF D
Sbjct: 82 SPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIPFLD 141
Query: 149 VPVFWPILLFYWLMLFTLTMRRQIMHMIKYRYVPFSLGKQRY 190
+PVFWPILL Y++++F++TM++QI HMIKY+Y+PF++GK+ Y
Sbjct: 142 LPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTY 183
>sp|Q4ZWM7|KUP_PSEU2 Probable potassium transport system protein kup OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=kup PE=3 SV=1
Length = 631
Score = 30.4 bits (67), Expect = 8.2, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 49 HVLHRWVVCLAVVSIYAVRVYLVQGFYIITYGLGIYLLNLLMGFL 93
VLH VV L VV + RV Q F + +YG G Y + L GF+
Sbjct: 508 QVLHEQVVLLTVVYEDSPRVPSAQRFEVESYGEGFYRVILHFGFI 552
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,934,539
Number of Sequences: 539616
Number of extensions: 3015981
Number of successful extensions: 9179
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9143
Number of HSP's gapped (non-prelim): 22
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)