Query 028705
Match_columns 205
No_of_seqs 121 out of 240
Neff 3.9
Searched_HMMs 13730
Date Tue Mar 26 02:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028705.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028705hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlca3 f.1.3.1 (A:61-289) del 15.0 1.5E+02 0.011 22.4 5.9 46 134-179 7-60 (229)
2 d1veha_ d.52.8.1 (A:) HIRA-int 11.7 42 0.003 22.9 1.4 19 164-183 61-79 (92)
3 d1u84a_ a.230.1.1 (A:) hypothe 10.4 66 0.0048 22.0 2.1 23 167-190 3-25 (81)
4 d1k8ia2 d.19.1.1 (A:11-92) Cla 9.2 40 0.0029 23.2 0.5 14 117-130 38-51 (82)
5 d1hdma2 d.19.1.1 (A:13-93) Cla 8.8 38 0.0028 23.3 0.2 14 117-130 39-52 (81)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 7.6 78 0.0057 27.6 1.9 55 80-134 467-523 (549)
7 d1k8ba_ d.241.1.1 (A:) Transla 6.9 73 0.0053 19.5 1.0 15 164-178 17-31 (52)
8 d2q07a3 d.17.6.5 (A:394-459) U 6.9 73 0.0053 20.5 1.0 14 168-181 5-18 (66)
9 d1g94a2 c.1.8.1 (A:1-354) Bact 5.7 86 0.0063 23.9 1.0 10 170-179 340-349 (354)
10 d1zeea1 a.266.1.2 (A:6-392) Hy 5.6 5.9E+02 0.043 21.3 6.5 83 112-199 132-235 (387)
No 1
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=15.01 E-value=1.5e+02 Score=22.42 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccCCCcchhHHHHHHHHHHHHH--------HHHHHHHHHhhhc
Q 028705 134 SFCIGFVLTFFSAFDVPVFWPILLFYWLMLFTL--------TMRRQIMHMIKYR 179 (205)
Q Consensus 134 at~ia~~~Tff~~fDiPVFWPILl~YFi~Lf~l--------Tm~rqI~HMiKyr 179 (205)
.+.++++.+......+|+-=+++-++..++=.+ -|.+|++.||..+
T Consensus 7 ~~~~~i~~~il~~~~~P~~g~~~~~~~~i~~~lwP~~~~w~~~~~~ve~lId~~ 60 (229)
T d1dlca3 7 QKGISVVGDLLGVVGFPFGGALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQK 60 (229)
T ss_dssp HHHHHHHHHHTTSCBSCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 356777777777777887655443333222222 6788999988765
No 2
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.73 E-value=42 Score=22.95 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhhccccC
Q 028705 164 FTLTMRRQIMHMIKYRYVPF 183 (205)
Q Consensus 164 f~lTm~rqI~HMiKyrYvPf 183 (205)
-..|+|..|++|+|+ ++|-
T Consensus 61 s~~Tlk~~Ie~~L~~-~vpe 79 (92)
T d1veha_ 61 SIITLKSGIQNMLQF-YIPE 79 (92)
T ss_dssp HHHHTHHHHHHHHHH-HCSS
T ss_pred HHHHHHHHHHHHHHH-HCCC
Confidence 457899999999998 5574
No 3
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.37 E-value=66 Score=21.96 Aligned_cols=23 Identities=35% Similarity=0.748 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhccccCCCCcccc
Q 028705 167 TMRRQIMHMIKYRYVPFSLGKQRY 190 (205)
Q Consensus 167 Tm~rqI~HMiKyrYvPf~~gK~~y 190 (205)
-|.+++-|+|| ++-||-.|...|
T Consensus 3 ~~n~~m~~~i~-~WDPF~~G~d~Y 25 (81)
T d1u84a_ 3 QLNRLLLEWIG-AWDPFGLGKDAY 25 (81)
T ss_dssp HHHHHHHHHHH-HHCTTSSCGGGG
T ss_pred HHHHHHHHHHH-ccCCcccCccch
Confidence 37888889988 689999999988
No 4
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=9.20 E-value=40 Score=23.19 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=11.3
Q ss_pred CcccCCchhHHHHH
Q 028705 117 PFVRRLPEFKFWYC 130 (205)
Q Consensus 117 PFiRRLPEFkFW~~ 130 (205)
--+.|||||.=|-.
T Consensus 38 ~rvPrLPefa~Wa~ 51 (82)
T d1k8ia2 38 TRVPRLPDFAEWAQ 51 (82)
T ss_dssp EEEESSTTTTHHHH
T ss_pred ccccCCCccccccc
Confidence 34779999999965
No 5
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=8.76 E-value=38 Score=23.26 Aligned_cols=14 Identities=50% Similarity=0.738 Sum_probs=11.1
Q ss_pred CcccCCchhHHHHH
Q 028705 117 PFVRRLPEFKFWYC 130 (205)
Q Consensus 117 PFiRRLPEFkFW~~ 130 (205)
--+.|||||+=|-.
T Consensus 39 ~rvPrLPefa~Wa~ 52 (81)
T d1hdma2 39 TRVPRLPEFADWAQ 52 (81)
T ss_dssp EEEESSGGGGGGTT
T ss_pred ccccCCCccccchh
Confidence 34779999999963
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=7.58 E-value=78 Score=27.62 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCC--CCCCCCCCCCCCcccCCchhHHHHHHHHH
Q 028705 80 GLGIYLLNLLMGFLSPQIDPEYSDGP--TLPTRGSDEFRPFVRRLPEFKFWYCVTRS 134 (205)
Q Consensus 80 ~LgIylLnlfi~FLtPk~Dp~l~eg~--~LP~~~~dEFRPFiRRLPEFkFW~~~tra 134 (205)
+..+++.|++....+.+..|+..+++ ......+.|=.+=.+.||+.|+|.-..-+
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~w~~~~~~ 523 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAI 523 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCCCCCCcccCCccHHHHHHHHH
Confidence 34567888888888777655432222 11122222222334578999999765443
No 7
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.95 E-value=73 Score=19.51 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhh
Q 028705 164 FTLTMRRQIMHMIKY 178 (205)
Q Consensus 164 f~lTm~rqI~HMiKy 178 (205)
.|-.|+|.-+|+.||
T Consensus 17 I~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 17 LAKAVNRDEEFFAKY 31 (52)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHH
Confidence 356789999999987
No 8
>d2q07a3 d.17.6.5 (A:394-459) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.88 E-value=73 Score=20.50 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhccc
Q 028705 168 MRRQIMHMIKYRYV 181 (205)
Q Consensus 168 m~rqI~HMiKyrYv 181 (205)
-||...||..|.+=
T Consensus 5 yrrilehmlsyqfg 18 (66)
T d2q07a3 5 YRRILEHMLSYQFG 18 (66)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhc
Confidence 38899999999873
No 9
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}
Probab=5.67 E-value=86 Score=23.89 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=7.5
Q ss_pred HHHHHHhhhc
Q 028705 170 RQIMHMIKYR 179 (205)
Q Consensus 170 rqI~HMiKyr 179 (205)
|||+.|||.|
T Consensus 340 ~~i~~mi~fr 349 (354)
T d1g94a2 340 SYIAGGVDFR 349 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 6778888765
No 10
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=5.61 E-value=5.9e+02 Score=21.30 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCCcccCCchhHHHHHHHHHHHHHHH--HHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhc----------
Q 028705 112 SDEFRPFVRRLPEFKFWYCVTRSFCIGFV--LTFFSAFDVPVFWPILLFYWLMLFTLTMRRQIMHMIKYR---------- 179 (205)
Q Consensus 112 ~dEFRPFiRRLPEFkFW~~~trat~ia~~--~Tff~~fDiPVFWPILl~YFi~Lf~lTm~rqI~HMiKyr---------- 179 (205)
++-+|.|..=.-|.-|=-+-||.++-..= -.+.++.|+|+==|+-.=-...+ |.-++-|++..
T Consensus 132 ~~~~k~ft~l~de~~f~~~nt~~~~a~~~a~~~l~~~~~lgi~hp~~~~ll~~~-----~~aLq~v~~sn~~l~~~ld~~ 206 (387)
T d1zeea1 132 NGIYKRFTDLPDEKLFVDYNTKGILAYKRASDALLKIQPLGISHPISHDLLRVT-----KQALQDVIESNQQLFNRLDTD 206 (387)
T ss_dssp TTEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSHHHHHHHHHH-----HHHHHHHHHHHHHHHTTSCHH
T ss_pred hhhHhhccCCchHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHH-----HHHHHHHHHHHHHHHHhcCHH
Q ss_pred ---------cccCCCCccccCCCCCCCCC
Q 028705 180 ---------YVPFSLGKQRYDGKRPSSSD 199 (205)
Q Consensus 180 ---------YvPf~~gK~~y~~~~~~~~~ 199 (205)
|-|+..|++.|.|.+.+.++
T Consensus 207 ~Ff~~vRPyykP~rVG~q~YrG~sAgqsa 235 (387)
T d1zeea1 207 RFFYCVRPYYKPYRVGSVVYRGANAGDFA 235 (387)
T ss_dssp HHHHHTGGGGCCEEETTEEECCCCTTCSH
T ss_pred HHHHHhhhhcchhhcCCeeeCCCChhhcc
Done!