Query 028706
Match_columns 205
No_of_seqs 167 out of 1392
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 02:30:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 5.5E-34 1.9E-38 242.6 11.6 123 59-191 1-232 (248)
2 1kca_A Repressor protein CI; g 99.3 5.6E-12 1.9E-16 94.1 10.3 90 65-191 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.2 8.9E-11 3.1E-15 88.0 9.0 88 64-188 27-115 (116)
4 1jhf_A LEXA repressor; LEXA SO 98.9 3.8E-09 1.3E-13 85.8 9.9 87 64-186 110-198 (202)
5 2hnf_A Repressor protein CI101 98.9 5.8E-09 2E-13 80.0 9.1 82 65-183 45-132 (133)
6 3bdn_A Lambda repressor; repre 98.9 4.8E-09 1.6E-13 86.6 8.3 90 65-191 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.6 2.7E-07 9.1E-12 74.8 10.6 84 64-184 109-193 (196)
8 2fjr_A Repressor protein CI; g 96.3 0.011 3.9E-07 46.3 7.4 65 91-185 122-186 (189)
9 1w4s_A Polybromo, polybromo 1 56.3 11 0.00037 29.3 3.9 42 91-132 12-53 (174)
10 3nx6_A 10KDA chaperonin; bacte 54.4 27 0.00092 24.8 5.4 11 90-100 6-16 (95)
11 1pcq_O Groes protein; chaperon 48.3 43 0.0015 23.8 5.6 64 91-156 7-87 (97)
12 3bbo_M Ribosomal protein L14; 44.2 94 0.0032 22.9 9.4 26 149-175 81-106 (121)
13 1p3h_A 10 kDa chaperonin; beta 44.1 41 0.0014 24.0 5.0 10 91-100 9-18 (99)
14 3r8s_K 50S ribosomal protein L 42.6 1E+02 0.0034 22.8 9.5 30 146-175 78-107 (122)
15 3v2d_O 50S ribosomal protein L 40.4 1.1E+02 0.0037 22.6 10.5 27 147-174 79-105 (122)
16 1we3_O CPN10(groes); chaperoni 39.0 46 0.0016 23.8 4.6 38 91-132 12-49 (100)
17 3i4o_A Translation initiation 38.7 17 0.0006 24.9 2.2 10 106-115 54-63 (79)
18 2dgy_A MGC11102 protein; EIF-1 35.4 27 0.00093 25.4 2.9 10 106-115 54-63 (111)
19 4dov_A ORC1, origin recognitio 33.3 1.7E+02 0.0058 22.7 7.7 26 105-131 38-63 (163)
20 1whi_A Ribosomal protein L14; 32.8 1.5E+02 0.005 21.9 8.2 26 148-174 80-105 (122)
21 1jt8_A EIF-1A, probable transl 32.4 18 0.00061 26.0 1.5 10 91-100 62-71 (102)
22 2pp6_A Gifsy-2 prophage ATP-bi 28.8 48 0.0016 23.8 3.2 38 91-133 50-87 (102)
23 3u5e_V L17A, YL32, 60S ribosom 26.5 1.2E+02 0.0041 22.9 5.3 29 145-174 93-121 (137)
24 1d7q_A Translation initiation 24.8 58 0.002 24.8 3.2 9 91-99 73-81 (143)
25 1vq8_K 50S ribosomal protein L 21.2 1E+02 0.0035 23.1 3.9 28 146-174 89-116 (132)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=5.5e-34 Score=242.55 Aligned_cols=123 Identities=32% Similarity=0.441 Sum_probs=106.7
Q ss_pred hhheeeEEEEEcCCCCccccCCCCCCCCCCCCCCeEEEEeeecc------------CCCCCcceEEEEecCCCCCcceEE
Q 028706 59 VSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQ------------KYKFSHGDVIVFCSPSNHKEKHVK 126 (205)
Q Consensus 59 i~~~~~~~~~V~g~SM~Ptl~~~~~~~~~~~~GD~Vlv~k~~~~------------~~~~~rGDIVvf~~p~~~~~~~vK 126 (205)
++.|+++++.|+|+||+|||+. ||+|+++|..|. ..++++||||+|+.|.+++..+||
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~----------GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iK 70 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIK 70 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEE
T ss_pred CeEEEEEEEEeccccccccccC----------CCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEE
Confidence 4678999999999999999999 999999998753 257999999999999877889999
Q ss_pred EEeeeCCCeeeccCC-----------------------------------------------------------------
Q 028706 127 RIIGLPGDWIGTPMT----------------------------------------------------------------- 141 (205)
Q Consensus 127 RViglpGD~V~i~~~----------------------------------------------------------------- 141 (205)
||+|+|||+|++...
T Consensus 71 RViglpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 150 (248)
T 1b12_A 71 RAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSE 150 (248)
T ss_dssp EEEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEE
T ss_pred EEEeeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhh
Confidence 999999999976111
Q ss_pred --------------------------------CCeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEEeCCCC
Q 028706 142 --------------------------------NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQR 189 (205)
Q Consensus 142 --------------------------------~~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i~P~~~ 189 (205)
..+++||+|+|||||||+++|.|||+||+||+++|+|||++++||+++
T Consensus 151 ~~e~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~ 230 (248)
T 1b12_A 151 RKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK 230 (248)
T ss_dssp EEEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred HHhhhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCc
Confidence 013589999999999999999999999999999999999999999886
Q ss_pred cc
Q 028706 190 VR 191 (205)
Q Consensus 190 ~~ 191 (205)
..
T Consensus 231 ~~ 232 (248)
T 1b12_A 231 QE 232 (248)
T ss_dssp --
T ss_pred cc
Confidence 53
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.35 E-value=5.6e-12 Score=94.14 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=71.4
Q ss_pred EEEEEcCCCCc------cccCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeec
Q 028706 65 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 138 (205)
Q Consensus 65 ~~~~V~g~SM~------Ptl~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i 138 (205)
....|.|+||+ |+|.+ ||+|++++.. .++.||+|++..+. ++.++||++..+
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~Vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------ 71 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS------ 71 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECST--TCEEEEEEEEET------
T ss_pred EEEEEeCcCcCCCCCCCCeeCC----------CCEEEEecCC----cCCCCCEEEEEECC--CeEEEEEEEEeC------
Confidence 46889999999 99999 9999999754 68999999998742 478999999743
Q ss_pred cCCCCeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEEeCCCCcc
Q 028706 139 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR 191 (205)
Q Consensus 139 ~~~~~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i~P~~~~~ 191 (205)
|.+++.+||+... .... -..-.|+|+|++.+||+..|+
T Consensus 72 -----------~~~~L~s~N~~y~--~~~~--~~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 -----------GQVFLQPLNPQYP--MIPC--NESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp -----------TEEEEECSSTTSC--CEEC--CTTCEEEEEEEEEECCGGGGC
T ss_pred -----------CEEEEEECCCCCC--CEEc--CCCcEEEEEEEEEEeCHHHcC
Confidence 4789999997421 1111 145679999999999987664
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.18 E-value=8.9e-11 Score=88.03 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=64.6
Q ss_pred eEEEEEcCCCCcc-ccCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCC
Q 028706 64 ASIVPVRGSSMSP-TFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 142 (205)
Q Consensus 64 ~~~~~V~g~SM~P-tl~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~ 142 (205)
.....|.|+||+| +|++ ||+|++++.. .++.||+|++.. ++..++||+...+
T Consensus 27 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~gdivv~~~---~~~~~vKr~~~~~---------- 79 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAV---DGEFTVKKLQLRP---------- 79 (116)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEE---TTEEEEEEEECSS----------
T ss_pred EEEEEECCCCcCCCCCCC----------CCEEEEEcCC----CCCCCCEEEEEE---CCEEEEEEEEeCC----------
Confidence 4568999999999 8999 9999999754 689999999988 4578999998742
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEEeCCC
Q 028706 143 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQ 188 (205)
Q Consensus 143 ~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i~P~~ 188 (205)
.+++.+||+.. .......-..-.|+|+|++++..+.
T Consensus 80 --------~~~L~s~N~~y--~~~~i~~~~~~~IiG~Vv~~~r~~r 115 (116)
T 1umu_A 80 --------TVQLIPMNSAY--SPITISSEDTLDVFGVVIHVVKAAT 115 (116)
T ss_dssp --------SCEEECSSTTS--CCEECCTTSCEEEEEEEEEEEC---
T ss_pred --------cEEEECCCCCC--CCEEcCCCCeEEEEEEEEEEEEecC
Confidence 57788998731 1111111123469999999876653
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.94 E-value=3.8e-09 Score=85.77 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=65.1
Q ss_pred eEEEEEcCCCCccc-cCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCC
Q 028706 64 ASIVPVRGSSMSPT-FNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 142 (205)
Q Consensus 64 ~~~~~V~g~SM~Pt-l~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~ 142 (205)
.....|.|+||+|+ |.+ ||+|++++.. .++.||+|++.. ++...+||+. .++
T Consensus 110 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~G~i~v~~~---~~~~~vKrl~-~~~--------- 162 (202)
T 1jhf_A 110 DFLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARI---DDEVTVKRLK-KQG--------- 162 (202)
T ss_dssp CEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEE---TTEEEEEEEE-EET---------
T ss_pred EEEEEECCCCCCCCCCCC----------CCEEEEeccC----CcCCCeEEEEEE---CCEEEEEEEE-EeC---------
Confidence 35688999999999 999 9999998754 688999999987 4689999998 454
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCccc-ccCCCCEeEEEEEEEeC
Q 028706 143 DVVKVPNGHCWVEGDNPSSSLDSRSFG-PIPLGLVKGRVTHILWP 186 (205)
Q Consensus 143 ~~~~vp~g~~~v~GDN~~~S~DSR~~G-~V~~~~IiGkv~~~i~P 186 (205)
|.+++.+||+.. ....+. .-..-.|+|+|++++..
T Consensus 163 -------~~~~l~s~N~~y--~~~~~~~~~~~~~IiG~Vv~~~r~ 198 (202)
T 1jhf_A 163 -------NKVELLPENSEF--KPIVVDLRQQSFTIEGLAVGVIRN 198 (202)
T ss_dssp -------TEEEEECSSTTC--CCEEEETTTSCEEEEEEEEEEEEC
T ss_pred -------CEEEEEECCCCC--CCEEccCCCCceEEEEEEEEEEEc
Confidence 478888998632 111111 01223599999988764
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.90 E-value=5.8e-09 Score=80.00 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=63.2
Q ss_pred EEEEEcCCCCc------cccCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeec
Q 028706 65 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 138 (205)
Q Consensus 65 ~~~~V~g~SM~------Ptl~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i 138 (205)
....|.|+||+ |+|.+ ||+|++++.. .++.||+|++... .++.++||+...+
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~vd~~~----~~~~Gdivv~~~~--~~~~~vKrl~~~~------ 102 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFAKLIRDS------ 102 (133)
T ss_dssp EEEECCSSTTCCC---CCCCCT----------TCEEEEETTS----CCCTTSEEEEEET--TTEEEEEEEEEET------
T ss_pred EEEEEeCCCcCCCcCCCCccCC----------CCEEEEccCC----CCCCCCEEEEEEC--CCEEEEEEEEEeC------
Confidence 46889999999 99999 9999999753 7899999999874 2478999998643
Q ss_pred cCCCCeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEE
Q 028706 139 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHI 183 (205)
Q Consensus 139 ~~~~~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~ 183 (205)
|.+++.+||+... ..... ..-.|+|+|++.
T Consensus 103 -----------~~~~L~s~N~~y~--~~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 103 -----------GQVFLQPLNPQYP--MIPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -----------TEEEEECSSTTSC--CEECS--TTEEEEEEEEEE
T ss_pred -----------CeEEEEECCCCCC--CEEcC--CCCEEEEEEEEE
Confidence 4788999997321 11111 445799999875
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.88 E-value=4.8e-09 Score=86.61 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=69.1
Q ss_pred EEEEEcCCCCc------cccCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeec
Q 028706 65 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 138 (205)
Q Consensus 65 ~~~~V~g~SM~------Ptl~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i 138 (205)
....|.|+||+ |+|.+ ||+|+|++.. .++.||+|++... .+..++||+...+
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~~----------Gd~v~vd~~~----~~~~g~ivv~~~~--~~~~~vKrl~~~~------ 198 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRGS------ 198 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCCS----------SCEEEECCSS----CCCTTSEEEEEST--TTCCCCEEEECCS------
T ss_pred EEEEEeCCCcCCCCCCCCcCCC----------CCEEEECCCC----CCCCCcEEEEEEC--CCeEEEEEEEEcC------
Confidence 46789999999 99999 9999998754 6889999999872 3578999998643
Q ss_pred cCCCCeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEEeCCCCcc
Q 028706 139 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR 191 (205)
Q Consensus 139 ~~~~~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i~P~~~~~ 191 (205)
|.+++..||+.. .....- ..-.|+|+|++.+||...|+
T Consensus 199 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 199 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp -----------SSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred -----------CcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 467788998732 111111 34579999999999987664
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.61 E-value=2.7e-07 Score=74.84 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=64.3
Q ss_pred eEEEEEcCCCC-ccccCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCC
Q 028706 64 ASIVPVRGSSM-SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 142 (205)
Q Consensus 64 ~~~~~V~g~SM-~Ptl~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~ 142 (205)
.....|.|+|| +|++.+ ||+|++++.. .++.||+|++.. +++..+||+.-.
T Consensus 109 ~f~l~v~GdSM~~p~i~~----------GD~viv~~~~----~~~~G~ivv~~~---~~~~~vKr~~~~----------- 160 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICD----------GDLVLVRRQD----WAQNGDIVAAMV---DGEVTLAKFYQR----------- 160 (196)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTCEEEEEE---TTEEEEEEEEEE-----------
T ss_pred EEEEEEeCCCcCCCCCCC----------CCEEEEeccC----cCCCCCEEEEEE---CCcEEEEEEEEE-----------
Confidence 45789999999 699999 9999999764 678999999987 468999999753
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEE
Q 028706 143 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL 184 (205)
Q Consensus 143 ~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i 184 (205)
+|.+++..||+.. .....- -..-.|+|+|++++
T Consensus 161 ------~~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 161 ------GDTVELRPANREM--SSMFFR-AEKVKILGKVVGVF 193 (196)
T ss_dssp ------TTEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEE
T ss_pred ------CCEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEE
Confidence 3578888998732 111111 13457999999876
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=96.31 E-value=0.011 Score=46.33 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=46.5
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCCCeEEecCCeEEEeeCCCCCCCCCCcccc
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGP 170 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~~~~~vp~g~~~v~GDN~~~S~DSR~~G~ 170 (205)
||+|+|++. .+..|+++++.. ++..++||+.-.+| |.+.+..||+. ...-
T Consensus 122 Gd~v~Vd~~-----~~~~g~i~vv~~---~g~~~vKrl~~~~~----------------~~i~L~s~N~~-----~~i~- 171 (189)
T 2fjr_A 122 GKIYFVDKQ-----ASLSDGLWLVDI---KGAISIRELTKLPG----------------RKLHVAGGKVP-----FECG- 171 (189)
T ss_dssp TEEEEEETT-----CCSCSEEEEEEE---TTEEEEEEEEEETT----------------TEEEEESSSSC-----EEEE-
T ss_pred CcEEEEEcC-----CccCCCEEEEEe---CCeEEEEEEEECCC----------------CEEEEEeCCCC-----eEec-
Confidence 999999864 256799999987 56899999987664 36777888861 1111
Q ss_pred cCCCCEeEEEEEEEe
Q 028706 171 IPLGLVKGRVTHILW 185 (205)
Q Consensus 171 V~~~~IiGkv~~~i~ 185 (205)
...=.|+|||++.+-
T Consensus 172 ~~~i~IiG~Vv~~~r 186 (189)
T 2fjr_A 172 IDDIKTLGRVVGVYS 186 (189)
T ss_dssp TTSSEEEEEEEEEEE
T ss_pred ccceEEEEEEEEEEE
Confidence 133469999998753
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=56.30 E-value=11 Score=29.28 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeC
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLP 132 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglp 132 (205)
+++.....+.+....++.||.|.+..+.++...+|.||..+-
T Consensus 12 ~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~ 53 (174)
T 1w4s_A 12 LHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLW 53 (174)
T ss_dssp --------------CCCTTCEEEECCSSTTSCCEEEEEEEEE
T ss_pred CCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEE
Confidence 556666555555568899999999876655667888888653
No 10
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=54.44 E-value=27 Score=24.76 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=8.4
Q ss_pred CCCeEEEEeee
Q 028706 90 SDDHVLMEKFC 100 (205)
Q Consensus 90 ~GD~Vlv~k~~ 100 (205)
.||+|++.+..
T Consensus 6 L~DRVlVk~~e 16 (95)
T 3nx6_A 6 LHDRVVVKPIE 16 (95)
T ss_dssp CTTEEEEEEC-
T ss_pred cCCEEEEEEcc
Confidence 38999998765
No 11
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=48.28 E-value=43 Score=23.78 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=31.2
Q ss_pred CCeEEEEeeecc-------------CCCCCcceEEEEecCC--CCCcceEEEEeeeCCCeeec-c-CCCCeEEecCCeEE
Q 028706 91 DDHVLMEKFCLQ-------------KYKFSHGDVIVFCSPS--NHKEKHVKRIIGLPGDWIGT-P-MTNDVVKVPNGHCW 153 (205)
Q Consensus 91 GD~Vlv~k~~~~-------------~~~~~rGDIVvf~~p~--~~~~~~vKRViglpGD~V~i-~-~~~~~~~vp~g~~~ 153 (205)
+|+|++.+.... ..+++.|.||+.-... +.++.. -.-=..||+|-+ . +...++++-...|.
T Consensus 7 ~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~~~--p~~VkvGD~Vlf~k~y~Gtevk~dgeey~ 84 (97)
T 1pcq_O 7 HDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGEVK--PLDVKVGDIVIFNDGYGVKSEKIDNEEVL 84 (97)
T ss_dssp SSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSSCE--ECSCCTTCEEEECCCSSCEEEEETTEEEE
T ss_pred CCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCCEE--ecccCCCCEEEECCccCCeEEEECCEEEE
Confidence 899999877522 2345566666654211 111110 011234666655 2 34455555554555
Q ss_pred Eee
Q 028706 154 VEG 156 (205)
Q Consensus 154 v~G 156 (205)
++-
T Consensus 85 i~r 87 (97)
T 1pcq_O 85 IMS 87 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 12
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=44.17 E-value=94 Score=22.92 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=18.3
Q ss_pred CCeEEEeeCCCCCCCCCCcccccCCCC
Q 028706 149 NGHCWVEGDNPSSSLDSRSFGPIPLGL 175 (205)
Q Consensus 149 ~g~~~v~GDN~~~S~DSR~~G~V~~~~ 175 (205)
++...++.++ .+..-+|-||||+++.
T Consensus 81 dNa~Vlin~~-g~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 81 DNAAVIIDQE-GNPKGTRIFGAIAREL 106 (121)
T ss_dssp SCEEEECCTT-SSCSSSCCCSCCCGGG
T ss_pred CceEEEECCC-CCEeEeEEEcCcCHHH
Confidence 4555555555 3778899999999763
No 13
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=44.09 E-value=41 Score=23.96 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=8.6
Q ss_pred CCeEEEEeee
Q 028706 91 DDHVLMEKFC 100 (205)
Q Consensus 91 GD~Vlv~k~~ 100 (205)
||+|++.+..
T Consensus 9 ~DRVlVk~~e 18 (99)
T 1p3h_A 9 EDKILVQANE 18 (99)
T ss_dssp TTEEEEEECC
T ss_pred CCEEEEEEcc
Confidence 8999998875
No 14
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=42.59 E-value=1e+02 Score=22.80 Aligned_cols=30 Identities=23% Similarity=0.560 Sum_probs=20.9
Q ss_pred EecCCeEEEeeCCCCCCCCCCcccccCCCC
Q 028706 146 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 175 (205)
Q Consensus 146 ~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~ 175 (205)
...++...++.++..+..-+|-||||+++.
T Consensus 78 ~FddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 78 RFDGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp EESSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred EcCCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 334566666666634677899999998763
No 15
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=40.39 E-value=1.1e+02 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=19.1
Q ss_pred ecCCeEEEeeCCCCCCCCCCcccccCCC
Q 028706 147 VPNGHCWVEGDNPSSSLDSRSFGPIPLG 174 (205)
Q Consensus 147 vp~g~~~v~GDN~~~S~DSR~~G~V~~~ 174 (205)
..++...++.++. +..-+|-||||+++
T Consensus 79 FddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 79 FDDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp ESSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred cCCcEEEEECCCC-CEeeeEEEccchHH
Confidence 3455555555553 77899999999875
No 16
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=38.96 E-value=46 Score=23.76 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=20.2
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeC
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLP 132 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglp 132 (205)
||+|++.+.... +-..|-|++=.. ...+.....|+|+.
T Consensus 12 ~DRVlVk~~e~e--~kT~gGI~LP~s--akeKp~~G~VvAVG 49 (100)
T 1we3_O 12 GDRVVVKRIEEE--PKTKGGIVLPDT--AKEKPQKGKVIAVG 49 (100)
T ss_dssp TTCEEEEECCCC--SSCTTCCCCCTT--TSCCCSEEEESCCC
T ss_pred CCEEEEEEcccc--ccccceEEeCcc--cccCCcCCEEEEEC
Confidence 899999887532 233455544221 12344455555554
No 17
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=38.69 E-value=17 Score=24.88 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=5.5
Q ss_pred CCcceEEEEe
Q 028706 106 FSHGDVIVFC 115 (205)
Q Consensus 106 ~~rGDIVvf~ 115 (205)
+..||.|.+.
T Consensus 54 Il~GD~V~ve 63 (79)
T 3i4o_A 54 ILPEDRVVVE 63 (79)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 4556665554
No 18
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.35 E-value=27 Score=25.41 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=5.0
Q ss_pred CCcceEEEEe
Q 028706 106 FSHGDVIVFC 115 (205)
Q Consensus 106 ~~rGDIVvf~ 115 (205)
+.+||+|+..
T Consensus 54 I~~GD~VlVe 63 (111)
T 2dgy_A 54 IKRGDFLIVD 63 (111)
T ss_dssp CCSSCEEEEE
T ss_pred EcCCCEEEEE
Confidence 3455555554
No 19
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=33.31 E-value=1.7e+02 Score=22.69 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=17.3
Q ss_pred CCCcceEEEEecCCCCCcceEEEEeee
Q 028706 105 KFSHGDVIVFCSPSNHKEKHVKRIIGL 131 (205)
Q Consensus 105 ~~~rGDIVvf~~p~~~~~~~vKRVigl 131 (205)
.++.||.|+.+.. +.++.+|-||..+
T Consensus 38 ~i~vGd~VLI~~~-D~~~PyVAki~~l 63 (163)
T 4dov_A 38 HIKVGQFVLIQGE-DNKKPYVAKLIEL 63 (163)
T ss_dssp EEETTCEEEECCS-SSSCCEEEEEEEE
T ss_pred EEeeCCEEEEeCC-cccCChhHHHHHH
Confidence 4567777777543 3456688888776
No 20
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=32.77 E-value=1.5e+02 Score=21.86 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=18.8
Q ss_pred cCCeEEEeeCCCCCCCCCCcccccCCC
Q 028706 148 PNGHCWVEGDNPSSSLDSRSFGPIPLG 174 (205)
Q Consensus 148 p~g~~~v~GDN~~~S~DSR~~G~V~~~ 174 (205)
.++...++.++. +..-+|-||||+++
T Consensus 80 ddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 80 DENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp SSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred CCceEEEECCCC-CEeeeEEEccchHH
Confidence 355566665553 77889999999875
No 21
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=32.45 E-value=18 Score=26.03 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=4.6
Q ss_pred CCeEEEEeee
Q 028706 91 DDHVLMEKFC 100 (205)
Q Consensus 91 GD~Vlv~k~~ 100 (205)
||+|+|....
T Consensus 62 GD~VlVe~~~ 71 (102)
T 1jt8_A 62 GDVVIVKPWE 71 (102)
T ss_dssp CEEEEECCBC
T ss_pred CCEEEEEecc
Confidence 4444444433
No 22
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=28.83 E-value=48 Score=23.85 Aligned_cols=38 Identities=24% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCC
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPG 133 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpG 133 (205)
|+-.-+--++.. ..|++||.|++.. .+++++|---..|
T Consensus 50 G~~rsLvvFSsg-YrP~r~D~Vv~~G----k~y~Vtr~~~~ng 87 (102)
T 2pp6_A 50 GNGKNVVVFSGN-VIPRRGDRVVLRG----SEFTVTRIRRFNG 87 (102)
T ss_dssp --CEEEEECCSS-CCCCTTCEEEETT----EEEEEEEEEEETT
T ss_pred CCceEEEEecCC-cccCCCCEEEEcC----cEEEEEEEEEECC
Confidence 664444444333 5899999999964 5678888765554
No 23
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=26.49 E-value=1.2e+02 Score=22.88 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=19.6
Q ss_pred EEecCCeEEEeeCCCCCCCCCCcccccCCC
Q 028706 145 VKVPNGHCWVEGDNPSSSLDSRSFGPIPLG 174 (205)
Q Consensus 145 ~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~ 174 (205)
+..-+|...++.++ .+..-+|-||||+++
T Consensus 93 i~FddNA~Vlin~~-g~p~GTrI~GPVarE 121 (137)
T 3u5e_V 93 LYFEDNAGVIANPK-GEMKGSAITGPVGKE 121 (137)
T ss_dssp EEESSCEEEEBCTT-CCBSSSCBCSCBCHH
T ss_pred EEcCCceEEEECCC-CCEeeeEEEcchhHH
Confidence 33445555555555 377889999999875
No 24
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.75 E-value=58 Score=24.80 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=4.5
Q ss_pred CCeEEEEee
Q 028706 91 DDHVLMEKF 99 (205)
Q Consensus 91 GD~Vlv~k~ 99 (205)
||+|+|...
T Consensus 73 GD~VlVe~~ 81 (143)
T 1d7q_A 73 SDIILVGLR 81 (143)
T ss_dssp TCEEEEECS
T ss_pred CCEEEEeec
Confidence 555555443
No 25
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=21.17 E-value=1e+02 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=19.3
Q ss_pred EecCCeEEEeeCCCCCCCCCCcccccCCC
Q 028706 146 KVPNGHCWVEGDNPSSSLDSRSFGPIPLG 174 (205)
Q Consensus 146 ~vp~g~~~v~GDN~~~S~DSR~~G~V~~~ 174 (205)
...+|...++.++ .+-.-+|-||||+++
T Consensus 89 ~FddNA~Vlin~~-g~p~GTrI~GPVarE 116 (132)
T 1vq8_K 89 KFEDNAAVIVDEN-EDPRGTELKGPIARE 116 (132)
T ss_dssp EESSCEEEEECTT-SCBSSSCBCSEECHH
T ss_pred EeCCceEEEECCC-CCEeEEEEEcCcCHH
Confidence 3345555555555 377889999999875
Done!