Query 028706
Match_columns 205
No_of_seqs 167 out of 1392
Neff 6.6
Searched_HMMs 13730
Date Tue Mar 26 02:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028706.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028706hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b12a_ b.87.1.2 (A:) Type 1 s 100.0 1.1E-35 8.2E-40 249.0 10.9 120 60-189 1-229 (247)
2 d1f39a_ b.87.1.1 (A:) lambda r 99.1 3.1E-10 2.2E-14 81.9 10.8 90 65-191 6-101 (101)
3 d1jhfa2 b.87.1.1 (A:73-198) Le 98.8 1E-08 7.6E-13 76.3 9.6 84 65-184 39-124 (126)
4 d1umua_ b.87.1.1 (A:) UmuD' {E 98.6 8.3E-08 6E-12 69.4 8.9 84 64-184 20-104 (105)
5 d1aono_ b.35.1.1 (O:) Chaperon 74.2 2.2 0.00016 28.4 4.7 86 91-180 7-95 (97)
6 d1we3o_ b.35.1.1 (O:) Chaperon 62.6 8 0.00058 25.4 5.5 87 90-180 7-95 (96)
7 d1p3ha_ b.35.1.1 (A:) Chaperon 59.5 6 0.00044 26.3 4.4 87 90-180 8-97 (99)
8 d1hr0w_ b.40.4.5 (W:) Translat 49.1 5.6 0.0004 25.2 2.6 20 90-112 49-68 (71)
9 d2io8a2 d.3.1.15 (A:10-200) Gl 43.4 26 0.0019 26.0 6.2 35 104-138 101-136 (191)
10 d1zvpa1 d.58.18.9 (A:2-67) Hyp 41.3 5.2 0.00038 24.9 1.5 16 73-98 12-27 (66)
11 d1whia_ b.39.1.1 (A:) Ribosoma 40.0 51 0.0037 22.5 9.9 27 147-174 79-105 (122)
12 d2j01o1 b.39.1.1 (O:1-122) Rib 35.9 60 0.0044 22.1 10.1 28 146-174 78-105 (122)
13 d1ah9a_ b.40.4.5 (A:) Translat 33.7 7.9 0.00057 24.4 1.4 19 91-112 49-67 (71)
14 d2gyci1 b.39.1.1 (I:2-122) Rib 30.5 37 0.0027 23.3 4.8 33 143-175 74-106 (121)
15 d1hkva1 b.49.2.3 (A:2-45,A:311 26.8 29 0.0021 25.6 3.9 25 90-116 111-135 (181)
16 d1twia1 b.49.2.3 (A:15-49,A:31 26.6 28 0.002 25.1 3.8 23 91-116 97-119 (170)
17 d1dm9a_ d.66.1.3 (A:) Heat sho 22.7 32 0.0023 22.8 3.1 30 104-136 43-72 (104)
18 d7odca1 b.49.2.3 (A:2-43,A:284 21.4 38 0.0028 24.4 3.6 23 91-116 122-144 (177)
19 d1f3ta1 b.49.2.3 (A:14-43,A:28 21.1 39 0.0028 24.2 3.6 23 91-116 110-132 (169)
20 d1wida_ b.142.1.2 (A:) DNA-bin 20.1 51 0.0037 21.6 3.9 14 104-117 83-96 (117)
No 1
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.1e-35 Score=248.99 Aligned_cols=120 Identities=32% Similarity=0.444 Sum_probs=107.3
Q ss_pred hheeeEEEEEcCCCCccccCCCCCCCCCCCCCCeEEEEeeeccC------------CCCCcceEEEEecCCCCCcceEEE
Q 028706 60 SDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQK------------YKFSHGDVIVFCSPSNHKEKHVKR 127 (205)
Q Consensus 60 ~~~~~~~~~V~g~SM~Ptl~~~~~~~~~~~~GD~Vlv~k~~~~~------------~~~~rGDIVvf~~p~~~~~~~vKR 127 (205)
++|+++++.|+|+||+|||.. ||+|+|+|++|.. ..+++||+|+|..|.++...++||
T Consensus 1 R~f~~~~f~IPs~SMePTL~~----------GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR 70 (247)
T d1b12a_ 1 RSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKR 70 (247)
T ss_dssp CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEE
T ss_pred CEEEEEEEEeCcccccchhcc----------CCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCcccccc
Confidence 368899999999999999999 9999999988764 355999999999999888999999
Q ss_pred EeeeCCCeeecc--------------------------------------------------------------------
Q 028706 128 IIGLPGDWIGTP-------------------------------------------------------------------- 139 (205)
Q Consensus 128 ViglpGD~V~i~-------------------------------------------------------------------- 139 (205)
|+|+|||+|.+.
T Consensus 71 ~ig~pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (247)
T d1b12a_ 71 AVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSER 150 (247)
T ss_dssp EEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEE
T ss_pred ccCCCCCeEEEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeee
Confidence 999999999750
Q ss_pred -----------------------------CCCCeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEEeCCCC
Q 028706 140 -----------------------------MTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQR 189 (205)
Q Consensus 140 -----------------------------~~~~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i~P~~~ 189 (205)
.....++||+|+|||||||+++|.|||+||+||+++|+|||++++||+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~~ 229 (247)
T d1b12a_ 151 KETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK 229 (247)
T ss_dssp EEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred eeccCCcceeEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECCC
Confidence 01235789999999999999999999999999999999999999999865
No 2
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=99.11 E-value=3.1e-10 Score=81.92 Aligned_cols=90 Identities=22% Similarity=0.286 Sum_probs=69.1
Q ss_pred EEEEEcCCCC------ccccCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeec
Q 028706 65 SIVPVRGSSM------SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT 138 (205)
Q Consensus 65 ~~~~V~g~SM------~Ptl~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i 138 (205)
...+|.|+|| +|+|++ ||+|+|++.. .++.||+|++... .+..++||+.-.
T Consensus 6 F~l~V~GdSM~~~~~~ep~i~~----------Gd~viVd~~~----~~~~g~ivva~~~--~~~~~vKr~~~~------- 62 (101)
T d1f39a_ 6 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRD------- 62 (101)
T ss_dssp EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECT--TSCEEEEEEEEE-------
T ss_pred EEEEEeCCccCCCcccCCCcCC----------CCEEEEEecC----ccCCCCEEEEEEC--CCeEEEEEEEEc-------
Confidence 4578999999 899999 9999999753 7899999988763 346789998754
Q ss_pred cCCCCeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEEeCCCCcc
Q 028706 139 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR 191 (205)
Q Consensus 139 ~~~~~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i~P~~~~~ 191 (205)
+|.+++..||+.. ..... -..-.|+|+|+..+||-..||
T Consensus 63 ----------~~~~~L~s~N~~y--~~i~~--~~~~~IiG~Vv~s~~p~~~~~ 101 (101)
T d1f39a_ 63 ----------SGQVFLQPLNPQY--PMIPC--NESCSVVGKVIASQWPEETFG 101 (101)
T ss_dssp ----------TTEEEEECSSTTS--CCEEC--STTCEEEEEEEEEECCGGGGC
T ss_pred ----------CCEEEEEECCCCC--CCCcC--CCCcEEEEEEEEEECcHHHCC
Confidence 3578899999742 12211 135679999999999977665
No 3
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=98.82 E-value=1e-08 Score=76.34 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=63.6
Q ss_pred EEEEEcCCCCccc-cCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCCC
Q 028706 65 SIVPVRGSSMSPT-FNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND 143 (205)
Q Consensus 65 ~~~~V~g~SM~Pt-l~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~~ 143 (205)
...+|.|+||+|+ +.+ ||++++++.. .++.||+|++.. .++..+||+.-.+
T Consensus 39 f~lrV~GdSM~~~~i~~----------gd~viv~~~~----~~~~G~ivv~~~---~ge~~vKrl~~~~----------- 90 (126)
T d1jhfa2 39 FLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARI---DDEVTVKRLKKQG----------- 90 (126)
T ss_dssp EEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEE---TTEEEEEEEEEET-----------
T ss_pred EEEEEcCCcccCcccCC----------CEEEEEeccc----cccCCCEEEEEE---CCEEEEEEEEEcC-----------
Confidence 4689999999998 888 9999999754 889999999998 5689999998543
Q ss_pred eEEecCCeEEEeeCCCCCCCCCCccc-ccCCCCEeEEEEEEE
Q 028706 144 VVKVPNGHCWVEGDNPSSSLDSRSFG-PIPLGLVKGRVTHIL 184 (205)
Q Consensus 144 ~~~vp~g~~~v~GDN~~~S~DSR~~G-~V~~~~IiGkv~~~i 184 (205)
|.+++..+|+... ...+. .=..=.|+|+|+.++
T Consensus 91 ------~~~~L~s~N~~y~--pi~~~~~~~~~~IiG~Vv~vi 124 (126)
T d1jhfa2 91 ------NKVELLPENSEFK--PIVVDLRQQSFTIEGLAVGVI 124 (126)
T ss_dssp ------TEEEEECSSTTCC--CEEEETTTSCEEEEEEEEEEE
T ss_pred ------CEEEEecCCcCCC--CeEccCCCCcEEEEEEEEEEE
Confidence 5789999997422 11110 001126999999876
No 4
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=98.62 E-value=8.3e-08 Score=69.45 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=62.5
Q ss_pred eEEEEEcCCCC-ccccCCCCCCCCCCCCCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCC
Q 028706 64 ASIVPVRGSSM-SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN 142 (205)
Q Consensus 64 ~~~~~V~g~SM-~Ptl~~~~~~~~~~~~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~ 142 (205)
....+|.|+|| .|.+.+ ||.+++++.. .++.||+|++.. .++..+||+.-
T Consensus 20 ~f~~rV~GdSM~~~gI~~----------GDlliVd~~~----~~~~g~ivva~i---~ge~~vKrl~~------------ 70 (105)
T d1umua_ 20 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAV---DGEFTVKKLQL------------ 70 (105)
T ss_dssp EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEE---TTEEEEEEEEC------------
T ss_pred eEEEEEcCCccccCccCC----------CCEEEEEccc----ccccCcEEEEEE---CCEEEEEEEEE------------
Confidence 34689999999 588999 9999999865 789999999998 57899999752
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCcccccCCCCEeEEEEEEE
Q 028706 143 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL 184 (205)
Q Consensus 143 ~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~IiGkv~~~i 184 (205)
+|..+++.+|+. ++.....+-..=.|.|+|++++
T Consensus 71 ------~~~~~L~~~N~~--y~~i~i~~~~~~~I~GvVv~vi 104 (105)
T d1umua_ 71 ------RPTVQLIPMNSA--YSPITISSEDTLDVFGVVIHVV 104 (105)
T ss_dssp ------SSSCEEECSSTT--SCCEECCTTSCEEEEEEEEEEE
T ss_pred ------CCcEEEECCCCC--CCCEEcCCCCCEEEEEEEEEEE
Confidence 235667788863 2333222222335999999875
No 5
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Probab=74.16 E-value=2.2 Score=28.42 Aligned_cols=86 Identities=13% Similarity=0.114 Sum_probs=45.5
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCCCeEEecCCeEEEeeCCCC---CCCCCCc
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPS---SSLDSRS 167 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~~~~~vp~g~~~v~GDN~~---~S~DSR~ 167 (205)
||+|||.+.... +-..|-|++=.. ...+.....|+++......-.....+..+..|...+.++... ...|...
T Consensus 7 gdrVLVk~~~~e--~kT~gGIiLp~~--~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg~~ 82 (97)
T d1aono_ 7 HDRVIVKRKEVE--TKSAGGIVLTGS--AAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEE 82 (97)
T ss_dssp TTEEEEEECCTT--CTTTTSSCCCCC--CSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSSCE
T ss_pred CCEEEEEEcccc--cEecceEEECCc--cccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECCEE
Confidence 899999876532 333566665222 223345566666553211111112233455556555555321 2345555
Q ss_pred ccccCCCCEeEEE
Q 028706 168 FGPIPLGLVKGRV 180 (205)
Q Consensus 168 ~G~V~~~~IiGkv 180 (205)
|=.+++++|+|++
T Consensus 83 y~ii~e~dIlavi 95 (97)
T d1aono_ 83 VLIMSESDILAIV 95 (97)
T ss_dssp EEEEETTTEEEEE
T ss_pred EEEEEHHHEEEEE
Confidence 6678888888875
No 6
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
Probab=62.56 E-value=8 Score=25.45 Aligned_cols=87 Identities=9% Similarity=0.101 Sum_probs=41.6
Q ss_pred CCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeeccCCCCeEEecCCeEEEeeCCCC--CCCCCCc
Q 028706 90 SDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPS--SSLDSRS 167 (205)
Q Consensus 90 ~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~~~~~~~~vp~g~~~v~GDN~~--~S~DSR~ 167 (205)
.||+||+.+.... +-..|-|++-.. ...+.....|+++......-.....+..+..|.+.+.++... -..|.-.
T Consensus 7 lgdrVLVk~~~~~--~kT~gGIiLp~~--~~~k~~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~~~~~g~~v~~~g~~ 82 (96)
T d1we3o_ 7 LGDRVVVKRIEEE--PKTKGGIVLPDT--AKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEE 82 (96)
T ss_dssp CTTCEEEEECCCC--SSCTTCCCCCTT--TSCCCSEEEESCCCCCEECTTSCEECCSCCTTCEEEECTTCSEEEECSSCE
T ss_pred cCCEEEEEEcccc--ceecccEEeccc--ccccceEEEEeeecceEecCCCCEEEeeEEeCCEEEEccCCCcEEEECCEE
Confidence 3899999887632 334677776322 123334566666532211100011111233344444433321 1234444
Q ss_pred ccccCCCCEeEEE
Q 028706 168 FGPIPLGLVKGRV 180 (205)
Q Consensus 168 ~G~V~~~~IiGkv 180 (205)
|=.++.++|+|++
T Consensus 83 y~ii~e~dIlavi 95 (96)
T d1we3o_ 83 YVILSERDLLAVL 95 (96)
T ss_dssp EEEECTTTEEEEE
T ss_pred EEEEEHHHEEEEe
Confidence 5567777777765
No 7
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=59.48 E-value=6 Score=26.29 Aligned_cols=87 Identities=7% Similarity=0.061 Sum_probs=45.6
Q ss_pred CCCeEEEEeeeccCCCCCcceEEEEecCCCCCcceEEEEeeeCCCeeecc-CCCCeEEecCCeEEEeeCCCC--CCCCCC
Q 028706 90 SDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTP-MTNDVVKVPNGHCWVEGDNPS--SSLDSR 166 (205)
Q Consensus 90 ~GD~Vlv~k~~~~~~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V~i~-~~~~~~~vp~g~~~v~GDN~~--~S~DSR 166 (205)
.||+||+.+.... +-..|-|++-.. ..+......|+++.-....-. ....+..+..|...+.+.+.. -..|..
T Consensus 8 lgdrVLVk~~~~~--~kT~gGIiLp~~--~~~~~~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~~~g~~v~~dg~ 83 (99)
T d1p3ha_ 8 LEDKILVQANEAE--TTTASGLVIPDT--AKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGE 83 (99)
T ss_dssp CTTEEEEEECCCC--CBCTTSCBCCCS--SCCSEEEEEEEEECCCEECSSSSCEECCSCCTTCEEEEECTTCEEEEETTE
T ss_pred cCCEEEEEEcchh--cccccceEeccc--cccCceEEEEEEECCceEcCCCCEecCCeeecCCEEEEcccCceEEEECCE
Confidence 3899999876532 334677776322 234556677777654332110 011122344555555554432 113444
Q ss_pred cccccCCCCEeEEE
Q 028706 167 SFGPIPLGLVKGRV 180 (205)
Q Consensus 167 ~~G~V~~~~IiGkv 180 (205)
.|=.+++++|+|++
T Consensus 84 ~y~ii~e~dIlavi 97 (99)
T d1p3ha_ 84 EYLILSARDVLAVV 97 (99)
T ss_dssp EEEEEEGGGEEEEE
T ss_pred EEEEEEHHHEEEEE
Confidence 45567777888775
No 8
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=49.14 E-value=5.6 Score=25.19 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=11.5
Q ss_pred CCCeEEEEeeeccCCCCCcceEE
Q 028706 90 SDDHVLMEKFCLQKYKFSHGDVI 112 (205)
Q Consensus 90 ~GD~Vlv~k~~~~~~~~~rGDIV 112 (205)
+||.|+|....| ++.+||||
T Consensus 49 ~GD~V~Vel~py---d~~kgrIi 68 (71)
T d1hr0w_ 49 PGDRVVVEITPY---DPTRGRIV 68 (71)
T ss_dssp TTCEEEEECCTT---CTTCCEEC
T ss_pred CCCEEEEEECcc---CCCcEEEE
Confidence 366666665543 45566654
No 9
>d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase, amidase domain {Escherichia coli [TaxId: 562]}
Probab=43.40 E-value=26 Score=26.04 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=26.4
Q ss_pred CCCCcceEEEEecCC-CCCcceEEEEeeeCCCeeec
Q 028706 104 YKFSHGDVIVFCSPS-NHKEKHVKRIIGLPGDWIGT 138 (205)
Q Consensus 104 ~~~~rGDIVvf~~p~-~~~~~~vKRViglpGD~V~i 138 (205)
..|+.|||++|.... ...-=+|-.|+.+.++.|.+
T Consensus 101 ~~P~~Gdllv~~~~~~~~~~GHVavV~~v~~~~v~i 136 (191)
T d2io8a2 101 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRI 136 (191)
T ss_dssp SCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEEEE
T ss_pred CCCCCCcEEEECCCCCCCCceeEEEEEEeCCCEEEE
Confidence 469999999997422 22234788899999999988
No 10
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=41.28 E-value=5.2 Score=24.93 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=14.4
Q ss_pred CCccccCCCCCCCCCCCCCCeEEEEe
Q 028706 73 SMSPTFNPTTDSFMGSLSDDHVLMEK 98 (205)
Q Consensus 73 SM~Ptl~~~~~~~~~~~~GD~Vlv~k 98 (205)
+|.|.|.+ |++|++.-
T Consensus 12 ~m~P~L~~----------g~yVF~t~ 27 (66)
T d1zvpa1 12 SMSPELMA----------GDYVFCTV 27 (66)
T ss_dssp TCEEEECS----------SCEEEEEE
T ss_pred HCCceECC----------CcEEEEEE
Confidence 79999999 99999963
No 11
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=40.02 E-value=51 Score=22.51 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=20.3
Q ss_pred ecCCeEEEeeCCCCCCCCCCcccccCCC
Q 028706 147 VPNGHCWVEGDNPSSSLDSRSFGPIPLG 174 (205)
Q Consensus 147 vp~g~~~v~GDN~~~S~DSR~~G~V~~~ 174 (205)
..+|.+.++.++ .+..-+|-+|||+++
T Consensus 79 F~~Na~VLl~~~-~~P~GTrI~Gpv~~e 105 (122)
T d1whia_ 79 FDENACVIIRDD-KSPRGTRIFGPVARE 105 (122)
T ss_dssp CSSCEEEEECTT-SCBSSSCBCSCBCTH
T ss_pred eCCCEEEEECCC-CCEeeeeEeccchHH
Confidence 346677777555 478899999999975
No 12
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=35.90 E-value=60 Score=22.10 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=20.2
Q ss_pred EecCCeEEEeeCCCCCCCCCCcccccCCC
Q 028706 146 KVPNGHCWVEGDNPSSSLDSRSFGPIPLG 174 (205)
Q Consensus 146 ~vp~g~~~v~GDN~~~S~DSR~~G~V~~~ 174 (205)
...++.+.++.++ .+..-+|-+|||+.+
T Consensus 78 ~F~~Na~VLl~~~-~~p~GTrI~Gpv~~e 105 (122)
T d2j01o1 78 RFDDNAAVIINNQ-LEPRGTRVFGPVARE 105 (122)
T ss_dssp ECSSCEEEEECTT-SCCSSSCCCSCCCTH
T ss_pred EcCCCEEEEECCC-CCEeeeEEeccchHH
Confidence 3445666666444 478899999999975
No 13
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=33.73 E-value=7.9 Score=24.43 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=9.4
Q ss_pred CCeEEEEeeeccCCCCCcceEE
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVI 112 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIV 112 (205)
||.|+|.-..| ++.+|||+
T Consensus 49 GD~V~Vel~py---d~~kgrIi 67 (71)
T d1ah9a_ 49 GDKVTVELTPY---DLSKGRIV 67 (71)
T ss_dssp TCEECCEECSS---CTTEEEEC
T ss_pred CCEEEEEECcc---CCCcEEEE
Confidence 55555554442 34455543
No 14
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}
Probab=30.54 E-value=37 Score=23.28 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=23.1
Q ss_pred CeEEecCCeEEEeeCCCCCCCCCCcccccCCCC
Q 028706 143 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGL 175 (205)
Q Consensus 143 ~~~~vp~g~~~v~GDN~~~S~DSR~~G~V~~~~ 175 (205)
..+..-++.+.++.++..+..-+|-+|||+.+.
T Consensus 74 ~~i~F~~Na~VLi~~~~~~p~GTrI~Gpv~~el 106 (121)
T d2gyci1 74 SVIRFDGNACVLLNNNSEQPIGTRIFGPVTREL 106 (121)
T ss_dssp CEECCSSCEEEEECSSSSCBSSSCCCSCBCSTT
T ss_pred eEEEeCCCEEEEEcCCCCCcccCeEEccchHHH
Confidence 344455666666666644567899999999874
No 15
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=26.85 E-value=29 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=13.2
Q ss_pred CCCeEEEEeeeccCCCCCcceEEEEec
Q 028706 90 SDDHVLMEKFCLQKYKFSHGDVIVFCS 116 (205)
Q Consensus 90 ~GD~Vlv~k~~~~~~~~~rGDIVvf~~ 116 (205)
+||++.-+.... .+++.||+++|..
T Consensus 111 sgDil~~d~~LP--~~l~~GDlLai~~ 135 (181)
T d1hkva1 111 SGDIIVRDTWVP--DDIRPGDLVAVAA 135 (181)
T ss_dssp TTCEEEEEEEEE--TTCCTTCEEEESC
T ss_pred cccEeeccccCc--ccCCCcCEEEEec
Confidence 366555444332 1456666666654
No 16
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=26.60 E-value=28 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=17.3
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEec
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCS 116 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~ 116 (205)
+|++.-+... .+++.||+|+|..
T Consensus 97 ~D~l~~~~~l---p~l~~GD~l~i~~ 119 (170)
T d1twia1 97 SDVFGRDREL---DKVEVGDVLAIFD 119 (170)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEEEC
T ss_pred ceEEEEeeec---cccCCCCEEEEeC
Confidence 8877766544 2688999999976
No 17
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=22.69 E-value=32 Score=22.82 Aligned_cols=30 Identities=0% Similarity=-0.026 Sum_probs=23.2
Q ss_pred CCCCcceEEEEecCCCCCcceEEEEeeeCCCee
Q 028706 104 YKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWI 136 (205)
Q Consensus 104 ~~~~rGDIVvf~~p~~~~~~~vKRViglpGD~V 136 (205)
..++.||+|.+.. +.....-+|.+++...+
T Consensus 43 ~~vk~GDvI~i~~---~~~~~~i~V~~l~~~R~ 72 (104)
T d1dm9a_ 43 KIVELNATLTLRQ---GNDERTVIVKAITEQRR 72 (104)
T ss_dssp CBCCTTCEEEEEE---TTEEEEEEECEEESCCC
T ss_pred ccCCCCCEEEEEe---CCeEEEEEEEEcccccC
Confidence 4789999999988 45567778888876654
No 18
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.35 E-value=38 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=16.2
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEec
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCS 116 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~ 116 (205)
+|++.-+... .+++.||+++|..
T Consensus 122 ~D~i~~~~~l---P~l~vGD~L~f~~ 144 (177)
T d7odca1 122 LDRIVERCNL---PEMHVGDWMLFEN 144 (177)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEECS
T ss_pred CCEEeecccC---CcccccCEEEEeC
Confidence 7876544332 2789999999976
No 19
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
Probab=21.14 E-value=39 Score=24.18 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=15.9
Q ss_pred CCeEEEEeeeccCCCCCcceEEEEec
Q 028706 91 DDHVLMEKFCLQKYKFSHGDVIVFCS 116 (205)
Q Consensus 91 GD~Vlv~k~~~~~~~~~rGDIVvf~~ 116 (205)
+|++.-+... .+++.||+++|..
T Consensus 110 ~D~i~~~~~l---Pel~vGD~L~~~n 132 (169)
T d1f3ta1 110 LDQIVERYYL---PEMQVGEWLLFED 132 (169)
T ss_dssp TCEEEEEEEE---ECCCTTCEEEECS
T ss_pred cceeeeeeec---ccccCCCEEEEeC
Confidence 7876654332 2688899998876
No 20
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.08 E-value=51 Score=21.56 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.7
Q ss_pred CCCCcceEEEEecC
Q 028706 104 YKFSHGDVIVFCSP 117 (205)
Q Consensus 104 ~~~~rGDIVvf~~p 117 (205)
..++.||+|+|..-
T Consensus 83 ~~Lk~GD~~~F~~~ 96 (117)
T d1wida_ 83 KNLRAGDVVSFSRS 96 (117)
T ss_dssp TTCCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEE
Confidence 57899999999753
Done!