Query 028707
Match_columns 205
No_of_seqs 228 out of 1225
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 02:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_K 60S ribosomal protein L 100.0 7.5E-81 2.6E-85 530.1 16.0 205 1-205 1-206 (206)
2 4a17_I RPL13A, 60S ribosomal p 100.0 2.4E-77 8.2E-82 506.1 16.0 197 7-205 1-198 (198)
3 2zkr_j 60S ribosomal protein L 100.0 1.3E-75 4.5E-80 497.1 8.4 199 7-205 2-201 (203)
4 4b6a_O 60S ribosomal protein L 100.0 9.1E-74 3.1E-78 484.4 19.3 196 8-205 3-199 (199)
5 3jyw_M 60S ribosomal protein L 100.0 4.7E-61 1.6E-65 401.0 6.0 148 12-159 1-148 (178)
6 1j3a_A 50S ribosomal protein L 100.0 9E-59 3.1E-63 375.3 11.7 142 11-154 1-142 (142)
7 1vq8_J 50S ribosomal protein L 100.0 1.4E-57 4.8E-62 369.4 11.4 139 5-154 3-143 (145)
8 3r8s_J 50S ribosomal protein L 100.0 2.1E-47 7.3E-52 308.6 6.9 118 1-129 5-140 (142)
9 3v2d_N 50S ribosomal protein L 100.0 7.4E-47 2.5E-51 304.9 6.6 113 6-129 8-138 (140)
10 2ftc_H L13MT, MRP-L13, 39S rib 100.0 1.1E-45 3.8E-50 300.4 8.2 108 7-121 14-139 (148)
11 3f1f_N 50S ribosomal protein L 100.0 6.3E-46 2.1E-50 305.5 4.6 114 6-130 31-162 (163)
12 2zjr_G 50S ribosomal protein L 100.0 5.6E-45 1.9E-49 302.7 8.8 112 7-125 37-166 (174)
13 3bbo_L Ribosomal protein L13; 100.0 9E-45 3.1E-49 314.3 3.4 126 2-134 102-248 (250)
14 3koj_A Uncharacterized protein 56.4 6 0.00021 29.6 2.3 23 20-42 59-81 (108)
15 4dam_A Single-stranded DNA-bin 43.3 13 0.00043 28.4 2.3 23 20-42 69-91 (128)
16 3vdy_A SSB, single-stranded DN 40.6 15 0.00052 27.0 2.3 23 20-42 56-78 (116)
17 1wi9_A Protein C20ORF116 homol 38.3 10 0.00035 26.9 1.0 27 137-163 18-45 (72)
18 3ulp_A Single-strand binding p 38.0 17 0.00057 27.2 2.2 23 20-42 60-83 (124)
19 1z9f_A Single-strand binding p 36.8 20 0.00068 28.2 2.6 23 20-42 69-91 (153)
20 1id1_A Putative potassium chan 36.5 41 0.0014 24.8 4.2 30 9-43 4-34 (153)
21 2vw9_A Single-stranded DNA bin 36.0 21 0.00072 27.2 2.6 22 20-41 55-76 (134)
22 3stb_C RNA-editing complex pro 35.0 40 0.0014 26.8 4.1 32 8-42 84-115 (148)
23 3afp_A Single-stranded DNA-bin 33.5 24 0.00081 28.0 2.6 23 20-42 59-81 (168)
24 1qvc_A Single stranded DNA bin 33.3 23 0.0008 27.3 2.4 23 20-42 59-81 (145)
25 1eqq_A Single stranded DNA bin 33.3 21 0.00071 28.7 2.2 22 20-41 60-81 (178)
26 3ull_A DNA binding protein; DN 32.0 23 0.00078 26.8 2.1 22 21-42 74-96 (132)
27 3tqy_A Single-stranded DNA-bin 31.3 24 0.00082 27.8 2.2 23 20-42 62-84 (158)
28 3k7u_C MP18 RNA editing comple 29.8 25 0.00087 27.6 2.1 23 20-42 58-81 (148)
29 3fwz_A Inner membrane protein 29.5 74 0.0025 23.1 4.6 36 4-44 3-39 (140)
30 3eiv_A Single-stranded DNA-bin 25.8 36 0.0012 28.1 2.4 22 20-41 59-80 (199)
31 3lgj_A Single-stranded DNA-bin 25.7 34 0.0012 27.3 2.2 22 21-42 78-100 (169)
32 1q7s_A BIT1, protein CGI-147; 24.6 1E+02 0.0035 22.9 4.6 38 8-45 3-60 (117)
33 3k81_C MP18 RNA editing comple 24.4 36 0.0012 27.4 2.1 29 9-41 67-96 (164)
34 1txy_A Primosomal replication 23.9 18 0.00062 26.2 0.2 22 20-41 54-75 (104)
35 3llv_A Exopolyphosphatase-rela 20.2 74 0.0025 22.8 3.0 29 10-43 8-37 (141)
36 2zv3_A PTH, peptidyl-tRNA hydr 20.2 1.7E+02 0.006 21.5 5.1 36 9-44 2-57 (115)
No 1
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=7.5e-81 Score=530.11 Aligned_cols=205 Identities=87% Similarity=1.386 Sum_probs=203.0
Q ss_pred CCCCCcccceEEEEeCCCCcchhHHHHHHHHHhCCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCCCcccccC
Q 028707 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRA 80 (205)
Q Consensus 1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~ 80 (205)
|+|..+|+++|+||||+||+||||||.||+.|+|||+|||||||+|+|||+++++|.||++|+++++++||..||+|+++
T Consensus 1 ~~~~~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~ 80 (206)
T 3iz5_K 1 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRA 80 (206)
T ss_dssp CCCSSSCCSSCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCS
T ss_pred CccccccceeEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcccccccc-
Q 028707 81 PAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIK- 159 (205)
Q Consensus 81 P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rk~~~LG~ls~~vGWk~~~~v~- 159 (205)
|++||++||+|||||||++|+.+|+||+||+|+||||++|++++||+|+++.+|+|+||||+|||||++|||+|++||+
T Consensus 81 P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~v~~l~p~rk~~~lg~ls~~~Gwk~~~vv~~ 160 (206)
T 3iz5_K 81 PAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRE 160 (206)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCBTTBCSSSSCEEEHHHHGGGTCTTHHHHHHH
T ss_pred HHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHhhhhcCCCCCeEEHHHHHHHHCchHHHHHHH
Confidence 9999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028707 160 VSKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 205 (205)
Q Consensus 160 le~krk~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 205 (205)
||++||+++++||++|+++++++++|++++++++++++++|+++||
T Consensus 161 le~krk~k~~~~y~~k~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y 206 (206)
T 3iz5_K 161 LEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 206 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999998
No 2
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=2.4e-77 Score=506.15 Aligned_cols=197 Identities=48% Similarity=0.814 Sum_probs=192.2
Q ss_pred ccceEEEEeCCCCcchhHHHHHHHHHhCCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCCCcccccCchHHHH
Q 028707 7 ICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILW 86 (205)
Q Consensus 7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~ 86 (205)
++++|+||||+||+||||||.||++|+|||+|||||||+|+|||+++++|.||++|++++++++|..||+|+++|++||+
T Consensus 1 ~~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~ 80 (198)
T 4a17_I 1 MFDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFW 80 (198)
T ss_dssp CCSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcccccccc-hhHHHH
Q 028707 87 RTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIK-VSKKRK 165 (205)
Q Consensus 87 raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rk~~~LG~ls~~vGWk~~~~v~-le~krk 165 (205)
+||+|||||||++|+.+|+||+||+|+||||++|++++||+|+++.+|+|+||||+|||||++|||+|++||+ ||++||
T Consensus 81 ~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al~v~rl~~~rk~~~lg~ls~~~Gwk~~~vv~~le~krk 160 (198)
T 4a17_I 81 RAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRR 160 (198)
T ss_dssp HHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGBHHHHSCTTSCEEEHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHhhhhhcCCCCCeEEHHHHHHHhCchHHHHHHHHHHHHH
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028707 166 ERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 205 (205)
Q Consensus 166 ~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 205 (205)
+++++||++|+++++++++|+++++++ +++++|++|||
T Consensus 161 ~k~~~~y~~k~~~~~~~~~a~~~~~~~--~~~~~l~~~g~ 198 (198)
T 4a17_I 161 ARAKTYHDKKVKQADARKKELAAPALK--AIKDKLAQFGY 198 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSHHHH--HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHcCC
Confidence 999999999999999999999988776 49999999998
No 3
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.3e-75 Score=497.14 Aligned_cols=199 Identities=54% Similarity=0.957 Sum_probs=133.6
Q ss_pred ccceEEEEeCCCCcchhHHHHHHHHHhCCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCCCcccccCchHHHH
Q 028707 7 ICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILW 86 (205)
Q Consensus 7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~ 86 (205)
..++|+||||+||+||||||+||++||.||+|||||||+|+|||+++++|.||.+|+++++++||..|++|+++|++||+
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~ 81 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFW 81 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHHH
Confidence 36899999999999999999999999999999999999999999999999999889999999999889999999999999
Q ss_pred HHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcccccccc-hhHHHH
Q 028707 87 RTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIK-VSKKRK 165 (205)
Q Consensus 87 raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rk~~~LG~ls~~vGWk~~~~v~-le~krk 165 (205)
+||+||||+||++|+.+|+||+||+|+||||++|+++++|+|+++.+++|+++||||||||++|||||+|+|+ ||++||
T Consensus 82 ~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~v~~~~~~~ky~~lg~ls~~~Gwk~~~vv~~le~kRk 161 (203)
T 2zkr_j 82 RTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRK 161 (203)
T ss_dssp HHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCCSSSSSCCSCEEEHHHHC-------------------
T ss_pred HHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhhhhhcCCCCceEEHHHHHHHhCccHHHHHHHHHHHHH
Confidence 9999999988999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028707 166 ERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 205 (205)
Q Consensus 166 ~k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 205 (205)
+++++||++|+++++++++|++++++++++++++|+++||
T Consensus 162 ~k~~~~y~~kk~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 201 (203)
T 2zkr_j 162 EKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKTHGL 201 (203)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999998
No 4
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=9.1e-74 Score=484.44 Aligned_cols=196 Identities=51% Similarity=0.879 Sum_probs=188.4
Q ss_pred cceEEEEeCCCCcchhHHHHHHHHHhCCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCCCcccccCchHHHHH
Q 028707 8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWR 87 (205)
Q Consensus 8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~r 87 (205)
+++|+||||+||+||||||.||+.|+.||+|||||||+|+|||+++++|.||+++.+..+..+|..||+|+|+|++||++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~ 82 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK 82 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999888888888888899999999999999
Q ss_pred HHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcccccccc-hhHHHHH
Q 028707 88 TIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIK-VSKKRKE 166 (205)
Q Consensus 88 aVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rk~~~LG~ls~~vGWk~~~~v~-le~krk~ 166 (205)
||||||||||++|+.+|+||+||+|+||||++|+++++|+|+++.+|+|+||||+|||||++|||||+++|+ ||++||+
T Consensus 83 aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al~~~~lkp~~Ky~~lg~ls~~~Gwk~~~vv~~le~krk~ 162 (199)
T 4b6a_O 83 AIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKV 162 (199)
T ss_dssp HHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGBHHHHSCTTCCEEEHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHHHhhccCCCCCeEEhhhhHHHhCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhccCCC
Q 028707 167 RAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 205 (205)
Q Consensus 167 k~~~~~~~k~~~~~~~~~a~~~~~~~~~~~~~~l~~~g~ 205 (205)
++++||++|++.++++++|.++++. ++++++|+++||
T Consensus 163 k~~~~~~~k~~~~k~~~~a~~~~~~--~~~~~~l~~~gy 199 (199)
T 4b6a_O 163 RSAEYYAKKRAFTKKVASANATAAE--SDVAKQLAALGY 199 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHcCC
Confidence 9999999999999999998877653 568999999998
No 5
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=4.7e-61 Score=401.03 Aligned_cols=148 Identities=57% Similarity=1.002 Sum_probs=145.8
Q ss_pred EEEeCCCCcchhHHHHHHHHHhCCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCCCcccccCchHHHHHHHhc
Q 028707 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRG 91 (205)
Q Consensus 12 ~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVrG 91 (205)
+||||+||+||||||+||++|+|||+|||||||+|+|||+++++|.||++|++++++++|..|++|+|+|++|||++|+|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG 80 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG 80 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCcccccccc
Q 028707 92 MIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIK 159 (205)
Q Consensus 92 MLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rk~~~LG~ls~~vGWk~~~~v~ 159 (205)
||||||++|+.+|+||+||+|+||||+.|+++++|+++++.+++|+++||+||+||+++||+|+++|+
T Consensus 81 MLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alrv~RLkp~rKy~tLGels~~vGwk~~~~~~ 148 (178)
T 3jyw_M 81 MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKAAAAAA 148 (178)
T ss_dssp SSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCCCCCSSSCSCCCCHHHHSSTTTCCCHHHHH
T ss_pred HhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhhhhccCCCCceEEcchhhhhcCCcchhhHH
Confidence 99988999999999999999999999999999999999999999999999999999999999999998
No 6
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=9e-59 Score=375.26 Aligned_cols=142 Identities=37% Similarity=0.549 Sum_probs=124.2
Q ss_pred EEEEeCCCCcchhHHHHHHHHHhCCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCCCcccccCchHHHHHHHh
Q 028707 11 RVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIR 90 (205)
Q Consensus 11 w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~g~~~~r~P~~I~~raVr 90 (205)
|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+++.+..+..+|..+++++++|++||++||+
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~ii~~aVr 80 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIR 80 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHC-------------CCCSHHHHHHHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCccCcccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998444444434433389999999999999999
Q ss_pred ccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCccc
Q 028707 91 GMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 154 (205)
Q Consensus 91 GMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rk~~~LG~ls~~vGWk~ 154 (205)
|||||||++|+++|+||+||+|+||||++|+++++|.|+. .+++ ++|||||||||++|||||
T Consensus 81 GMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~~-~~~~-~~k~~~lg~ls~~~Gwk~ 142 (142)
T 1j3a_A 81 GMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV-SRLS-RPKYVTVGEVAKFLGGKF 142 (142)
T ss_dssp TTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGBG-GGSS-SCCEEEHHHHHHHHTCCC
T ss_pred hhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHHh-hccC-CCCeEEHHHHHHHhCCCC
Confidence 9999989999999999999999999999999999999985 6775 899999999999999997
No 7
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1.4e-57 Score=369.39 Aligned_cols=139 Identities=34% Similarity=0.492 Sum_probs=130.9
Q ss_pred CcccceEEEEeCCCCcchhHHHHHHHHHhCCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCC--CcccccCch
Q 028707 5 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH--GPIHFRAPA 82 (205)
Q Consensus 5 ~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~--g~~~~r~P~ 82 (205)
.+++++|+||||+||+||||||+||+.|+|||+|||||||+|+|||+++++|.||+ |++|||+ +++++++|+
T Consensus 3 ~a~~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------htg~~g~~~~~~~~r~P~ 76 (145)
T 1vq8_J 3 VAEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE------KRVDIGNDNGYFYPKRPD 76 (145)
T ss_dssp -CCCCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHHHCCCSSCCCCCCSHH
T ss_pred ccccccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeE------EeCCCCCCHHHHhhcChH
Confidence 35678999999999999999999999999999999999999999999999999998 6677764 999999999
Q ss_pred HHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhcCCCCCeeehhhhhhhhCccc
Q 028707 83 KILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNY 154 (205)
Q Consensus 83 ~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl~p~rk~~~LG~ls~~vGWk~ 154 (205)
+||++||+|||||||++|+++|+||+||+|+||| |+++++|.|+. .+++ ++|||+|||||++|||||
T Consensus 77 ~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~~-~~l~-~~k~~~lg~ls~~~Gwk~ 143 (145)
T 1vq8_J 77 GIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTSL-DRLS-NIKFVTLGEISETLGANK 143 (145)
T ss_dssp HHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCBC-CTTS-CCSEEEHHHHHHHHTCCC
T ss_pred HHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhhh-hccC-CCCeEEHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999 89999999974 6775 899999999999999999
No 8
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=2.1e-47 Score=308.65 Aligned_cols=118 Identities=26% Similarity=0.439 Sum_probs=112.7
Q ss_pred CCCCCcccceEEEEeCCCCcchhHHHHHHHHHh------------CCCEEEEEeeceeEeeCccchhhhHHhhhhccccc
Q 028707 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN 68 (205)
Q Consensus 1 ~~~~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~ 68 (205)
|+++..+.++|+||||+||+||||||.||++|+ |||+|||||||+|+|||+++++|.||+ |+
T Consensus 5 ~~~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------ht 78 (142)
T 3r8s_J 5 TAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH------HT 78 (142)
T ss_dssp CCCTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCE------EC
T ss_pred cCChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEE------ec
Confidence 578899999999999999999999999999999 999999999999999999999999997 99
Q ss_pred ccCCC------CcccccCchHHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchh
Q 028707 69 TKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129 (205)
Q Consensus 69 ~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al 129 (205)
+|||+ +++++++|++||++||+|||| ||++|+.+|+||+||+|+||||++|+ |..+
T Consensus 79 gypGg~k~~~~~~~~~r~P~~ii~~aVrGMLP-kn~lgr~~l~rLkVy~G~~hph~aq~----p~~l 140 (142)
T 3r8s_J 79 GHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAAQQ----PQVL 140 (142)
T ss_dssp SSTTCEECCBHHHHHHHCSHHHHHHHHHHHSC-SSHHHHHHHTTEEECSSSCCSCGGGC----CEEC
T ss_pred CcCCCccccCHHHHHhhCHHHHHHHHHHhcCC-CChhHHHHHhCCEEECCCCCCcccCC----Ceec
Confidence 99986 888999999999999999999 69999999999999999999999999 6654
No 9
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=7.4e-47 Score=304.88 Aligned_cols=113 Identities=30% Similarity=0.488 Sum_probs=108.7
Q ss_pred cccceEEEEeCCCCcchhHHHHHHHHHh------------CCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCC
Q 028707 6 GICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH 73 (205)
Q Consensus 6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~ 73 (205)
.+.++|+||||+||+||||||+||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------htgypGg 81 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 81 (140)
T ss_dssp CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEE------ECSSTTC
T ss_pred cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEE------ecccCCc
Confidence 7899999999999999999999999998 999999999999999999999999996 9999996
Q ss_pred ------CcccccCchHHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchh
Q 028707 74 ------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129 (205)
Q Consensus 74 ------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al 129 (205)
+++++++|++||++||+||||+ |++|+.+|+||+||+|+||||++|+ |.++
T Consensus 82 lk~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~----p~~~ 138 (140)
T 3v2d_N 82 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKL 138 (140)
T ss_dssp EEEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGC----CEEE
T ss_pred ceeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCC----Ceec
Confidence 8899999999999999999995 9999999999999999999999999 7665
No 10
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.1e-45 Score=300.43 Aligned_cols=108 Identities=25% Similarity=0.370 Sum_probs=104.9
Q ss_pred ccceEEEEeCCCCcchhHHHHHHHHHh------------CCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCC-
Q 028707 7 ICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH- 73 (205)
Q Consensus 7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~- 73 (205)
|.++|+||||+||+||||||.||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 14 ~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~------htg~pGg~ 87 (148)
T 2ftc_H 14 FARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSS------HTGYPGGF 87 (148)
T ss_pred ccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeee------eeCCcCCc
Confidence 399999999999999999999999999 999999999999999999999999997 8999986
Q ss_pred -----CcccccCchHHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccc
Q 028707 74 -----GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK 121 (205)
Q Consensus 74 -----g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k 121 (205)
+++++++|++||++||+||||+ |++|+.+|+||+||+|++|||+.|+
T Consensus 88 k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hP~~aq~ 139 (148)
T 2ftc_H 88 RQVTAAQLHLRDPVAIVKLAIYGMLPK-NLHRRTMMERLHLFPDEYIPEDILK 139 (148)
T ss_pred eeccHHHHhhcCHHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCChHHhC
Confidence 8999999999999999999995 8999999999999999999999999
No 11
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=6.3e-46 Score=305.51 Aligned_cols=114 Identities=30% Similarity=0.487 Sum_probs=108.5
Q ss_pred cccceEEEEeCCCCcchhHHHHHHHHHh------------CCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCC
Q 028707 6 GICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH 73 (205)
Q Consensus 6 ~~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~ 73 (205)
.+.++|+||||+||+||||||.||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~------htgypGg 104 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 104 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECC------BCSSTTC
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEE------ecCcCCc
Confidence 7899999999999999999999999998 999999999999999999999999996 9999986
Q ss_pred ------CcccccCchHHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhh
Q 028707 74 ------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130 (205)
Q Consensus 74 ------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~ 130 (205)
+++++++|++|||+||+||||+ |++|+.+|+||+||+|+||||++|+ |..++
T Consensus 105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~----P~~l~ 162 (163)
T 3f1f_N 105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQR----PEKLE 162 (163)
T ss_dssp BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCC----CBCC-
T ss_pred ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCC----CeecC
Confidence 8899999999999999999995 9999999999999999999999999 76653
No 12
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=5.6e-45 Score=302.66 Aligned_cols=112 Identities=28% Similarity=0.419 Sum_probs=107.2
Q ss_pred ccceEEEEeCCCCcchhHHHHHHHHHh------------CCCEEEEEeeceeEeeCccchhhhHHhhhhcccccccCCC-
Q 028707 7 ICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSH- 73 (205)
Q Consensus 7 ~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr~~~~P~~- 73 (205)
+.++|+||||+||+||||||.||+.|+ |||+|||||||+|+|||+++++|.||+ |++|||+
T Consensus 37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~------htgypGGl 110 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTR------YTGYQGGL 110 (174)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEE------CCSSCSSC
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEE------ecCcCCCc
Confidence 899999999999999999999999999 999999999999999999999999996 9999986
Q ss_pred -----CcccccCchHHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccccccC
Q 028707 74 -----GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVI 125 (205)
Q Consensus 74 -----g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vv 125 (205)
+++++++|++||++||+||||+ |++|+++|+||+||+|+||||++|+++++
T Consensus 111 k~~~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqkp~~l 166 (174)
T 2zjr_G 111 KTETAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQKPQVL 166 (174)
T ss_dssp CEEEESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCCSCCC
T ss_pred ccccHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccCCeEE
Confidence 8999999999999999999995 99999999999999999999999994443
No 13
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=9e-45 Score=314.26 Aligned_cols=126 Identities=29% Similarity=0.451 Sum_probs=103.8
Q ss_pred CCCCc---ccceEEEEeCCCCcchhHHHHHHHHHh------------CCCEEEEEeeceeEeeCccchhhhHHhhhhccc
Q 028707 2 VSGSG---ICAKRVVVDARHHMLGRLASVLAKELL------------NGQKVVVVRCEEICISGGLVRQKMKYMRFLRKR 66 (205)
Q Consensus 2 ~~~~~---~~~~w~vIDA~g~iLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iSG~k~r~K~~y~~~l~kr 66 (205)
+++.. +.++|+||||+||+||||||+||++|+ |||+|||||||+|+|||+++++|.||+
T Consensus 102 ~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~r------ 175 (250)
T 3bbo_L 102 PKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRR------ 175 (250)
T ss_dssp ----------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBC------
T ss_pred CChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEE------
Confidence 44555 689999999999999999999999999 999999999999999999999999764
Q ss_pred ccccCCC------CcccccCchHHHHHHHhccCCCCChhhHHHhhcCceecCCCCCccccccccCCchhhhhhc
Q 028707 67 MNTKPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRL 134 (205)
Q Consensus 67 ~~~~P~~------g~~~~r~P~~I~~raVrGMLP~K~~~G~~al~rLkvy~G~p~p~~~~k~~vvP~al~v~rl 134 (205)
|++|||+ +++++++|++|||+||+||||+ |++|+.+|+||+||+|.+|||++|+++++|.++++.+|
T Consensus 176 HsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k~v~~ 248 (250)
T 3bbo_L 176 HSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDKRIRV 248 (250)
T ss_dssp CCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC------------
T ss_pred ecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhheeec
Confidence 9999986 7899999999999999999995 99999999999999999999999999999998877665
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=56.42 E-value=6 Score=29.63 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
+.|++|..+++.|..||.|.|--
T Consensus 59 ~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 59 GWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhCCCCCEEEEEE
Confidence 45899999999999999988753
No 15
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=43.31 E-value=13 Score=28.45 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
..|++|..+++.|..||.|+|.-
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 69 ANRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEcHHHHHHHHhcCCCCEEEEEE
Confidence 35899999999999999998854
No 16
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=40.58 E-value=15 Score=26.99 Aligned_cols=23 Identities=22% Similarity=0.047 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
..|++|..+++.|..|+.|.|.-
T Consensus 56 ~wg~~Ae~~~~~l~KG~~V~V~G 78 (116)
T 3vdy_A 56 LWRKTAENTALYCQKGSLVGVSG 78 (116)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHHhCCCCCEEEEEE
Confidence 46899999999999999888753
No 17
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=38.34 E-value=10 Score=26.87 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.7
Q ss_pred CCCeeehhhhhhhhCcccccccc-hhHH
Q 028707 137 GHKYCLLGRLSSEVGWNYYDTIK-VSKK 163 (205)
Q Consensus 137 ~rk~~~LG~ls~~vGWk~~~~v~-le~k 163 (205)
.+|-+.|.+||.++|-+-+++++ +++-
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~L 45 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDL 45 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHH
Confidence 47899999999999999999998 6553
No 18
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=37.98 E-value=17 Score=27.21 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.8
Q ss_pred cch-hHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLG-RLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLG-RLAS~VAk~Ll~Gd~VVVVN 42 (205)
..| ++|..+++.|..|+.|.|.-
T Consensus 60 ~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 60 VYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp ECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEchHHHHHHhhcCCCCEEEEEE
Confidence 357 89999999999999998853
No 19
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=36.80 E-value=20 Score=28.17 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.8
Q ss_pred cchhHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
..|++|..+++.|..|+.|.|.-
T Consensus 69 ~wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 69 TFGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHhhCCCCCEEEEEE
Confidence 35899999999999999988753
No 20
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=36.46 E-value=41 Score=24.83 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=23.4
Q ss_pred ceEEEEeCCCCcchhHHHHHHHHHh-CCCEEEEEee
Q 028707 9 AKRVVVDARHHMLGRLASVLAKELL-NGQKVVVVRC 43 (205)
Q Consensus 9 ~~w~vIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNa 43 (205)
.+++|+ | .|++++.+|..|. .|..|+||.-
T Consensus 4 ~~vlI~---G--~G~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 4 DHFIVC---G--HSILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp SCEEEE---C--CSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEE---C--CCHHHHHHHHHHHHCCCCEEEEEC
Confidence 456666 4 3999999999987 6988888864
No 21
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=36.03 E-value=21 Score=27.16 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.7
Q ss_pred cchhHHHHHHHHHhCCCEEEEE
Q 028707 20 MLGRLASVLAKELLNGQKVVVV 41 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (205)
..|++|..+++.|..|+.|.|.
T Consensus 55 ~wg~~Ae~~~~~l~KG~~V~V~ 76 (134)
T 2vw9_A 55 LFGRTAEIANQYLSKGSSVLIE 76 (134)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEE
T ss_pred EEcHHHHHHHHhCCCCCEEEEE
Confidence 4689999999999988887775
No 22
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=34.96 E-value=40 Score=26.80 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.7
Q ss_pred cceEEEEeCCCCcchhHHHHHHHHHhCCCEEEEEe
Q 028707 8 CAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 8 ~~~w~vIDA~g~iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
...|+-|=+-| |.||..|.+.|..|++|+|.-
T Consensus 84 ~tdf~~V~vfG---g~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 84 DKDFHTVRVFD---SDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp SEEEEEEEECS---HHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEC---ChHHHHHHHHhcCCCEEEEEE
Confidence 45677777766 899999999999999998864
No 23
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=33.53 E-value=24 Score=28.05 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
+.|++|..+++.|..|+.|+|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 59 IWREAAENVAESLTRGARVIVTG 81 (168)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999999998863
No 24
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=33.30 E-value=23 Score=27.27 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
+.|++|..+++.|..|+.|.|.-
T Consensus 59 ~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 59 LFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EehHHHHHHHHhcCCCCEEEEEE
Confidence 35789999999999999988853
No 25
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=33.29 E-value=21 Score=28.73 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.2
Q ss_pred cchhHHHHHHHHHhCCCEEEEE
Q 028707 20 MLGRLASVLAKELLNGQKVVVV 41 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (205)
+.|+||..+++.|..|+.|+|.
T Consensus 60 ~wg~~Ae~~~~~l~KG~~V~Ve 81 (178)
T 1eqq_A 60 LFGKLAEVASEYLRKGSQVYIE 81 (178)
T ss_dssp ECHHHHHHHHHHCCTTCEEEEC
T ss_pred EccHHHHHHHHhcCCCCEEEEE
Confidence 4688999999999999998875
No 26
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=31.99 E-value=23 Score=26.77 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=18.6
Q ss_pred ch-hHHHHHHHHHhCCCEEEEEe
Q 028707 21 LG-RLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 21 LG-RLAS~VAk~Ll~Gd~VVVVN 42 (205)
.| ++|..+++.|..|+.|.|.-
T Consensus 74 wg~~~Ae~~~~~l~KG~~V~V~G 96 (132)
T 3ull_A 74 FRPGLRDVAYQYVKKGSRIYLEG 96 (132)
T ss_dssp CSTTHHHHHHHHCCTTCEEEEEE
T ss_pred EchHHHHHHHhhCCCCCEEEEEE
Confidence 46 69999999999999988753
No 27
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=31.26 E-value=24 Score=27.76 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRLASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVVN 42 (205)
+.|+||..+++.|..|+.|+|.-
T Consensus 62 ~wg~~Ae~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 62 FFNRLAEIVGEYLRKGSKIYIEG 84 (158)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHhhcCCCCEEEEEE
Confidence 36899999999999999888753
No 28
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=29.84 E-value=25 Score=27.58 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.4
Q ss_pred cchhH-HHHHHHHHhCCCEEEEEe
Q 028707 20 MLGRL-ASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 20 iLGRL-AS~VAk~Ll~Gd~VVVVN 42 (205)
+.|++ |..+++.|..|+.|.|.-
T Consensus 58 ~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 58 CFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp EESHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECcHHHHHHHhhCCCCCEEEEEE
Confidence 35676 999999999999998864
No 29
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=29.51 E-value=74 Score=23.14 Aligned_cols=36 Identities=31% Similarity=0.603 Sum_probs=26.9
Q ss_pred CCcccceEEEEeCCCCcchhHHHHHHHHHh-CCCEEEEEeec
Q 028707 4 GSGICAKRVVVDARHHMLGRLASVLAKELL-NGQKVVVVRCE 44 (205)
Q Consensus 4 ~~~~~~~w~vIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNae 44 (205)
+..+...++|+ + +|++++.+|+.|. .|..|++|..+
T Consensus 3 ~~~~~~~viIi-G----~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 3 AVDICNHALLV-G----YGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCCCSCEEEE-C----CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cccCCCCEEEE-C----cCHHHHHHHHHHHHCCCCEEEEECC
Confidence 34455566666 2 4999999999997 79999998753
No 30
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=25.84 E-value=36 Score=28.10 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHhCCCEEEEE
Q 028707 20 MLGRLASVLAKELLNGQKVVVV 41 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (205)
+.|+||..+++.|..|+.|+|.
T Consensus 59 awgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 59 VWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp EETHHHHHHHHHCCTTCEEEEE
T ss_pred EEhHHHHHHHHhcCCCCEEEEE
Confidence 3588999999999999998885
No 31
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=25.74 E-value=34 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.1
Q ss_pred chh-HHHHHHHHHhCCCEEEEEe
Q 028707 21 LGR-LASVLAKELLNGQKVVVVR 42 (205)
Q Consensus 21 LGR-LAS~VAk~Ll~Gd~VVVVN 42 (205)
.|+ ||..+++.|..|+.|.|.-
T Consensus 78 wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 78 FNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred eCHHHHHHHHHhCCCCCEEEEEE
Confidence 578 9999999999999988753
No 32
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=24.58 E-value=1e+02 Score=22.94 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=26.4
Q ss_pred cceEEEEeCC-CCcchhHHHHHHHHHh-------------------CCCEEEEEeece
Q 028707 8 CAKRVVVDAR-HHMLGRLASVLAKELL-------------------NGQKVVVVRCEE 45 (205)
Q Consensus 8 ~~~w~vIDA~-g~iLGRLAS~VAk~Ll-------------------~Gd~VVVVNaek 45 (205)
.+..+||..+ +.-.|.+|+++|-.-+ +|+..||+.|++
T Consensus 3 ~K~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~KVvlk~~~ 60 (117)
T 1q7s_A 3 YKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPD 60 (117)
T ss_dssp EEEEEEEEGGGCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhhCHHHHHHHHhCCCeeEEEEcCC
Confidence 3566777654 5789999999876543 577777776653
No 33
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=24.38 E-value=36 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCcchhH-HHHHHHHHhCCCEEEEE
Q 028707 9 AKRVVVDARHHMLGRL-ASVLAKELLNGQKVVVV 41 (205)
Q Consensus 9 ~~w~vIDA~g~iLGRL-AS~VAk~Ll~Gd~VVVV 41 (205)
..||=|-+ .|++ |..+++.|..|+.|.|.
T Consensus 67 Tdw~~Vv~----wgk~lAE~~~~yL~KGs~V~Ve 96 (164)
T 3k81_C 67 KDHHTIRC----FGELFSAEVKQKVKEGNVVCVN 96 (164)
T ss_dssp CEEEEEEE----CCHHHHHHHHHHCCTTCEEEEC
T ss_pred eEEEEEEE----ECCHHHHHHHhhcCCCCEEEEE
Confidence 34665543 5688 99999999999998774
No 34
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=23.94 E-value=18 Score=26.23 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHhCCCEEEEE
Q 028707 20 MLGRLASVLAKELLNGQKVVVV 41 (205)
Q Consensus 20 iLGRLAS~VAk~Ll~Gd~VVVV 41 (205)
..|++|..+++.|..|+.|.|-
T Consensus 54 ~~g~~Ae~~~~~l~KG~~V~V~ 75 (104)
T 1txy_A 54 VSGHENQAITHSITVGSRITVQ 75 (104)
T ss_dssp EESSTTHHHHTTCCTTCEEEEE
T ss_pred EEhHHHHHHHhhCCCCCEEEEE
Confidence 5689999999999999988775
No 35
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.23 E-value=74 Score=22.80 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=22.1
Q ss_pred eEEEEeCCCCcchhHHHHHHHHHh-CCCEEEEEee
Q 028707 10 KRVVVDARHHMLGRLASVLAKELL-NGQKVVVVRC 43 (205)
Q Consensus 10 ~w~vIDA~g~iLGRLAS~VAk~Ll-~Gd~VVVVNa 43 (205)
..+|+ + .|++++.+|..|. .|..|+++.-
T Consensus 8 ~v~I~-G----~G~iG~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 8 EYIVI-G----SEAAGVGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp SEEEE-C----CSHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEE-C----CCHHHHHHHHHHHHCCCeEEEEEC
Confidence 45555 3 2889999999887 6999988864
No 36
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=20.23 E-value=1.7e+02 Score=21.52 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=25.3
Q ss_pred ceEEEEeC-CCCcchhHHHHHHHHHh-------------------CCCEEEEEeec
Q 028707 9 AKRVVVDA-RHHMLGRLASVLAKELL-------------------NGQKVVVVRCE 44 (205)
Q Consensus 9 ~~w~vIDA-~g~iLGRLAS~VAk~Ll-------------------~Gd~VVVVNae 44 (205)
+..+||.. =+.-.|.+|+++|---+ +|+..||+.|+
T Consensus 2 k~vivvr~dL~m~~GKiaAQ~~HAa~~~~~~~~~~~~~~~~~W~~~g~~kivlk~~ 57 (115)
T 2zv3_A 2 KMVVVIRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVN 57 (115)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCEEEEEES
T ss_pred EEEEEEECCCCcCHhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHCCCeEEEEecC
Confidence 35667765 36779999998874332 68888888775
Done!