BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028708
MRACPLSLDSSGSCLLFFPISKPATTATSHSTSRFPFTSTRSSIQKTPHSILSVSPEFNL
SQFKRNGTSYCSNTNSSELDIEEEDDDDVLSEEGSGSQTQSLHGDGVCIEIKKLGRNSRR
IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRLTTGHMYYMI
WRTEMGFMGRQNVFNAVLIVQEGTL

High Scoring Gene Products

Symbol, full name Information P value
AT4G01650 protein from Arabidopsis thaliana 1.1e-18
AT5G08720 protein from Arabidopsis thaliana 8.8e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028708
        (205 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2133442 - symbol:AT4G01650 "AT4G01650" species...   225  1.1e-18   1
TAIR|locus:504956340 - symbol:AT5G08720 "AT5G08720" speci...   124  8.8e-07   1


>TAIR|locus:2133442 [details] [associations]
            symbol:AT4G01650 "AT4G01650" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            Pfam:PF03364 GO:GO:0009507 EMBL:CP002687 Gene3D:3.30.530.20
            InterPro:IPR023393 EMBL:AL161492 InterPro:IPR005031 IPI:IPI00525114
            PIR:C85021 RefSeq:NP_192074.1 UniGene:At.34395
            ProteinModelPortal:Q9M120 STRING:Q9M120 PRIDE:Q9M120
            EnsemblPlants:AT4G01650.1 GeneID:828138 KEGG:ath:AT4G01650
            TAIR:At4g01650 InParanoid:Q9M120 OMA:SKIGMEA PhylomeDB:Q9M120
            ProtClustDB:CLSN2685516 ArrayExpress:Q9M120 Genevestigator:Q9M120
            Uniprot:Q9M120
        Length = 288

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 43/64 (67%), Positives = 55/64 (85%)

Query:   105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFV 164
             DGV IE+KKL ++SRRIRSKI ++ASLD+VW +LTDYEKL+DF+P L VS++VEK  N V
Sbjct:   101 DGVLIELKKLEKSSRRIRSKIGMEASLDSVWSVLTDYEKLSDFIPGLVVSELVEKEGNRV 160

Query:   165 RLYQ 168
             RL+Q
Sbjct:   161 RLFQ 164


>TAIR|locus:504956340 [details] [associations]
            symbol:AT5G08720 "AT5G08720" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] Pfam:PF03364 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.530.20
            InterPro:IPR023393 EMBL:AL590346 InterPro:IPR005031 EMBL:BT005959
            EMBL:AK117869 IPI:IPI00531129 RefSeq:NP_680157.1 UniGene:At.45652
            SMR:Q9C5A5 IntAct:Q9C5A5 STRING:Q9C5A5 EnsemblPlants:AT5G08720.1
            GeneID:830772 KEGG:ath:AT5G08720 TAIR:At5g08720 eggNOG:NOG86694
            HOGENOM:HOG000030841 InParanoid:Q9C5A5 OMA:AITRMGG
            ProtClustDB:CLSN2690141 Genevestigator:Q9C5A5 Uniprot:Q9C5A5
        Length = 719

 Score = 124 (48.7 bits), Expect = 8.8e-07, P = 8.8e-07
 Identities = 28/72 (38%), Positives = 44/72 (61%)

Query:   110 EIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVS-QVVEKNDNFVRLYQ 168
             E+  +    RRIR +I +D+   +VW++LTDYE+LADF+PNL  S ++   +   + L Q
Sbjct:    88 EVDVISWRERRIRGEIWVDSDSQSVWNVLTDYERLADFIPNLVWSGRIPCPHPGRIWLEQ 147

Query:   169 RRLTTGHMYYMI 180
             R L    +Y+ I
Sbjct:   148 RGLQRA-LYWHI 158

 Score = 109 (43.4 bits), Expect = 0.00068, P = 0.00068
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query:   123 SKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRLTTGHMYYMI 180
             + I + A +  VW +LT YE L + VPNLA+S+++ +++N VR+ Q     G +Y ++
Sbjct:   339 ASITVKAPVCEVWKVLTSYESLPEIVPNLAISKILSRDNNKVRILQEGCK-GLLYMVL 395


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       167   0.00075  108 3  11 22  0.49    31
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.67u 0.08s 13.75t   Elapsed:  00:00:02
  Total cpu time:  13.67u 0.08s 13.75t   Elapsed:  00:00:02
  Start:  Sat May 11 08:02:04 2013   End:  Sat May 11 08:02:06 2013

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