BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028708
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4B|B Chain B, 1.6 Angstrom Structure Of Esherichia Coli Aspartate-
Semialdehyde Dehydrogenase.
pdb|1T4D|A Chain A, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|B Chain B, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
pdb|1T4D|C Chain C, Crystal Structure Of Escherichia Coli Aspartate
Beta-Semialdehyde Dehydrogenase (Ecasadh), At 1.95
Angstrom Resolution
Length = 367
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1BRM|C Chain C, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia
Coli
pdb|1GL3|B Chain B, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
pdb|1GL3|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase In Complex With
Nadp And Substrate Analogue S-Methyl Cysteine Sulfoxide
Length = 367
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|B Chain B, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|C Chain C, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|D Chain D, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
Length = 371
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L NS+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCNSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 103 HGDGVCIEIKKLGRNS---RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK 159
H DG + IK + S RR + ++ + TVW ++T K D +P + ++EK
Sbjct: 177 HADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEK 236
Query: 160 NDNFVRLYQRRLTTGHMYYMIWRTEM 185
+ RL Q + T +Y ++ + M
Sbjct: 237 GE---RLPQPPICTIDVYMIMVKCWM 259
>pdb|2PEJ|A Chain A, Crystal Structure Of Rbcx Point Mutant Y17aY20L
pdb|2PEJ|B Chain B, Crystal Structure Of Rbcx Point Mutant Y17aY20L
pdb|2PEJ|C Chain C, Crystal Structure Of Rbcx Point Mutant Y17aY20L
pdb|2PEJ|D Chain D, Crystal Structure Of Rbcx Point Mutant Y17aY20L
pdb|2PEJ|E Chain E, Crystal Structure Of Rbcx Point Mutant Y17aY20L
pdb|2PEJ|F Chain F, Crystal Structure Of Rbcx Point Mutant Y17aY20L
Length = 134
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 132 DTVWHILTDYEKLAD----FVPNLAVSQVVEKNDNFVRLYQRRLT 172
+ V ILT E LA+ F+P + +SQ+ + N N R RLT
Sbjct: 66 ELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
>pdb|3HFQ|A Chain A, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118.
pdb|3HFQ|B Chain B, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118
Length = 347
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILT--DYEKLADFVPNLAVSQVVEKNDN 162
DG + + G N+ + + + D L + I T D+ + D P A VV +N +
Sbjct: 250 DGHFLYVSNRGYNTLAVFA-VTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308
Query: 163 FVRLYQRRLTTGHM 176
LY R LT+G +
Sbjct: 309 NATLYARDLTSGKL 322
>pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
pdb|3UW3|B Chain B, Crystal Structure Of An Aspartate-Semialdehyde
Dehydrogenase From Burkholderia Thailandensis
Length = 377
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I + +S+ + K++ D LD + IL VPN
Sbjct: 270 DGLCVRIGAMRCHSQALTIKLKKDVPLDEINGILASANDWVKVVPN 315
>pdb|2PEK|A Chain A, Crystal Structure Of Rbcx Point Mutant Q29a
pdb|2PEK|B Chain B, Crystal Structure Of Rbcx Point Mutant Q29a
pdb|2PEK|C Chain C, Crystal Structure Of Rbcx Point Mutant Q29a
pdb|2PEK|D Chain D, Crystal Structure Of Rbcx Point Mutant Q29a
pdb|2PEK|E Chain E, Crystal Structure Of Rbcx Point Mutant Q29a
pdb|2PEK|F Chain F, Crystal Structure Of Rbcx Point Mutant Q29a
Length = 134
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 132 DTVWHILTDYEKLAD----FVPNLAVSQVVEKNDNFVRLYQRRLT 172
+ V ILT E LA+ F+P + +SQ+ + N N R RLT
Sbjct: 66 ELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
>pdb|2PEM|A Chain A, Crystal Structure Of Rbcx In Complex With Substrate
pdb|2PEM|B Chain B, Crystal Structure Of Rbcx In Complex With Substrate
pdb|2PEM|C Chain C, Crystal Structure Of Rbcx In Complex With Substrate
pdb|2PEM|D Chain D, Crystal Structure Of Rbcx In Complex With Substrate
pdb|2PEM|E Chain E, Crystal Structure Of Rbcx In Complex With Substrate
pdb|2PEM|F Chain F, Crystal Structure Of Rbcx In Complex With Substrate
pdb|2PEN|A Chain A, Crystal Structure Of Rbcx, Crystal Form I
pdb|2PEN|B Chain B, Crystal Structure Of Rbcx, Crystal Form I
pdb|2PEN|C Chain C, Crystal Structure Of Rbcx, Crystal Form I
pdb|2PEN|D Chain D, Crystal Structure Of Rbcx, Crystal Form I
pdb|2PEN|E Chain E, Crystal Structure Of Rbcx, Crystal Form I
pdb|2PEN|F Chain F, Crystal Structure Of Rbcx, Crystal Form I
pdb|2PEQ|A Chain A, Crystal Structure Of Rbcx, Crystal Form Ii
pdb|2PEQ|B Chain B, Crystal Structure Of Rbcx, Crystal Form Ii
pdb|2Z45|A Chain A, Crystal Structure Of Zn-bound Orf134
pdb|2Z45|B Chain B, Crystal Structure Of Zn-bound Orf134
pdb|2Z46|A Chain A, Crystal Structure Of Native-Orf134
pdb|2Z46|B Chain B, Crystal Structure Of Native-Orf134
pdb|2Z46|C Chain C, Crystal Structure Of Native-Orf134
pdb|2Z46|D Chain D, Crystal Structure Of Native-Orf134
pdb|2Z46|E Chain E, Crystal Structure Of Native-Orf134
pdb|2Z46|F Chain F, Crystal Structure Of Native-Orf134
Length = 134
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 132 DTVWHILTDYEKLAD----FVPNLAVSQVVEKNDNFVRLYQRRLT 172
+ V ILT E LA+ F+P + +SQ+ + N N R RLT
Sbjct: 66 ELVLRILTVRENLAEGVLEFLPEMVLSQIKQSNGNHRRSLLERLT 110
>pdb|2NN5|A Chain A, Structure Of Conserved Protein Of Unknown Function Ef2215
From Enterococcus Faecalis
Length = 184
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 127 IDASLDTVWHILTDYEKLADFVPNLAVSQV 156
I AS T+W LT+ +KL + P L + ++
Sbjct: 44 ISASPQTIWRYLTETDKLKQWFPELEIGEL 73
>pdb|1PS8|A Chain A, Crystal Structure Of The R270k Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C++I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVKIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 142
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 101 SLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN 160
S H G+ +E K+G +++ S I A + ++ + +K+A FVPN +E+N
Sbjct: 43 SSHAKGIVLE--KIGIEAKQPNSAIRKCARV----QLVKNGKKIAAFVPNDGCLNFIEEN 96
Query: 161 D 161
D
Sbjct: 97 D 97
>pdb|1PR3|A Chain A, Crystal Structure Of The R103k Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|1NWC|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1NWC|B Chain B, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1TA4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Arsenate
pdb|1TB4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Periodate
Length = 371
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|1OZA|A Chain A, Crystal Structure Of The R103l Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|1PU2|A Chain A, Crystal Structure Of The K246r Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|1PQP|A Chain A, Crystal Structure Of The C136s Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Aspartate Semialdehyde And Phosphate
Length = 371
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|1NWH|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NWH|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NX6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithiocetal Reaction Intermediate With Phosphate At
2.15 A
Length = 371
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
pdb|1Q2X|B Chain B, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
Length = 371
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ I L +S+ K++ D L+ + I+ + + +PN
Sbjct: 265 DGLCVRIGALRCHSQAFTIKLKKDLPLEEIEQIIASHNEWVKVIPN 310
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 115 GRNSRRIRSKIEIDASLDTVWHILTDYEK----LADFVPNLAVSQVVEKNDNFVRLYQ 168
R+ R+R+ + + DT+WH+ ++ + F+ L ++V+ D +YQ
Sbjct: 420 ARDQDRLRATCTLSGNRDTLWHLFNTLQRRPGWVEYFIAALRGCELVDLADEVASVYQ 477
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,609,003
Number of Sequences: 62578
Number of extensions: 136646
Number of successful extensions: 347
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 21
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)