BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028708
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P57523|DHAS_BUCAI Aspartate-semialdehyde dehydrogenase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=asd PE=3 SV=1
Length = 371
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 37 FTSTRSSIQKTPHSILSVSPEFNLSQFKRNGTSYCSNTNSSELD------IEEEDDDDVL 90
+ S + + K HSILS+ E +++ R+ ++ S L I+ E +
Sbjct: 185 YKSVETDLLKGSHSILSI--EDKVTKISRS-VNFPVKNFSVPLAASLIPWIDTEMSNGQS 241
Query: 91 SEEGSG-SQTQSLHG-------DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYE 142
EE G ++T + G DG C+ I L +S+ K++ D SL+ + I+ ++
Sbjct: 242 REEWKGQAETNKILGTKDTILIDGTCVRIGSLRCHSQSFVIKLKKDVSLEDIEEIIRNHN 301
Query: 143 KLADFVPN 150
K D +PN
Sbjct: 302 KWVDVIPN 309
>sp|Q9UIX4|KCNG1_HUMAN Potassium voltage-gated channel subfamily G member 1 OS=Homo
sapiens GN=KCNG1 PE=2 SV=1
Length = 513
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 81 IEEEDDDDVLSEEGSGSQTQSLHGDGVCIEIKKLGRNSRRIRSKIE 126
+E E++DD L EG S+ + G+G +LGR RR+R +E
Sbjct: 180 VEREEEDDALDSEGRDSEGPA-EGEG------RLGRCMRRLRDMVE 218
>sp|P38157|MAL33_YEAST Maltose fermentation regulatory protein MAL33 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MAL33 PE=3
SV=1
Length = 468
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 63 FKRNGTSYCSNTNSSELDIEEEDD--DDVLSEEGSGSQTQSLHGDGVCIEIKKLGRNSRR 120
F+ NGT + SN N++ + +E D DD+ + + +HG G+ ++ ++
Sbjct: 343 FQMNGTKFFSNANNAHILVEIAKDMLDDIFL---TPNNLYDVHGPGIPMKSLEVANALVD 399
Query: 121 IRSKIEIDASLDTVWHILTDYEKLA 145
I +K + + L+ W+IL D K
Sbjct: 400 IVNKYDHNMKLEA-WNILCDVSKFV 423
>sp|P0A9R1|DHAS_SHIFL Aspartate-semialdehyde dehydrogenase OS=Shigella flexneri GN=asd
PE=3 SV=1
Length = 367
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>sp|P0A9Q9|DHAS_ECOLI Aspartate-semialdehyde dehydrogenase OS=Escherichia coli (strain
K12) GN=asd PE=1 SV=1
Length = 367
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>sp|P0A9R0|DHAS_ECO57 Aspartate-semialdehyde dehydrogenase OS=Escherichia coli O157:H7
GN=asd PE=3 SV=1
Length = 367
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>sp|Q8FCR6|DHAS_ECOL6 Aspartate-semialdehyde dehydrogenase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=asd PE=3 SV=2
Length = 367
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG+C+ + L +S+ K++ D S+ TV +L + A VPN
Sbjct: 262 DGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPN 307
>sp|Q91287|FGFR3_PLEWA Fibroblast growth factor receptor 3 OS=Pleurodeles waltl GN=FGFR3
PE=2 SV=1
Length = 796
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 17/168 (10%)
Query: 18 FPISKPATTATSHSTSRFPFTSTRSSIQKTPHSILSVSPEFNLSQFKRNGTSYCSNTNSS 77
P K TAT H S+FP R ++ S+ S +P +++ + +N +
Sbjct: 385 MPSKKTMNTATVHKVSKFPL--KRQVSLESNSSMNSNTPLVRITRLSSSDGPMLANVSEL 442
Query: 78 EL--DIEEEDDDDVLS---EEGSGSQTQSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLD 132
EL D + E L+ G G Q + D V IE K + + ++ DA
Sbjct: 443 ELPADPKWELSRSRLTLGKPLGEGCFGQVVMADAVGIEKDKPNKATSVAVKMLKDDA--- 499
Query: 133 TVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRLTTGHMYYMI 180
TD + L+D V + + +++ K+ N + L G +Y ++
Sbjct: 500 ------TD-KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLV 540
>sp|Q8K9B5|DHAS_BUCAP Aspartate-semialdehyde dehydrogenase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=asd PE=3 SV=1
Length = 371
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150
DG C+ I + +S+ K+ D SL+ + I+ ++ + D +PN
Sbjct: 264 DGTCVRISSIRCHSQSFLIKLNKDISLENIKKIIVNHNQWVDVIPN 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,050,786
Number of Sequences: 539616
Number of extensions: 2918126
Number of successful extensions: 12141
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 11529
Number of HSP's gapped (non-prelim): 617
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)