Query 028708
Match_columns 205
No_of_seqs 106 out of 136
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 15:45:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08866 SRPBCC_11 Ligand-bindi 99.1 1.8E-10 3.8E-15 86.7 6.0 51 121-171 1-51 (144)
2 PF03364 Polyketide_cyc: Polyk 98.9 3.9E-09 8.5E-14 78.4 7.3 43 127-169 1-43 (130)
3 cd07813 COQ10p_like Coenzyme Q 98.9 6.7E-09 1.4E-13 78.5 6.4 48 122-169 2-49 (138)
4 cd07819 SRPBCC_2 Ligand-bindin 98.6 1.6E-07 3.4E-12 69.3 7.6 43 119-161 2-44 (140)
5 PRK10724 hypothetical protein; 98.6 2.8E-07 6E-12 75.1 7.8 69 119-202 15-83 (158)
6 cd08876 START_1 Uncharacterize 98.3 2.5E-06 5.3E-11 68.6 7.9 67 103-169 24-92 (195)
7 cd08865 SRPBCC_10 Ligand-bindi 98.3 1.5E-06 3.3E-11 63.2 5.9 40 121-160 1-40 (140)
8 cd07817 SRPBCC_8 Ligand-bindin 98.3 1.1E-06 2.5E-11 64.9 5.0 47 121-167 2-48 (139)
9 cd08861 OtcD1_ARO-CYC_like N-t 98.3 1.6E-06 3.5E-11 65.1 5.3 49 121-170 1-51 (142)
10 cd08862 SRPBCC_Smu440-like Lig 98.2 3.4E-06 7.3E-11 62.3 5.9 48 120-167 2-52 (138)
11 cd05018 CoxG Carbon monoxide d 98.1 1.6E-06 3.4E-11 64.3 3.0 40 120-159 2-41 (144)
12 cd07821 PYR_PYL_RCAR_like Pyra 98.1 6.3E-06 1.4E-10 60.2 5.6 41 120-160 2-42 (140)
13 cd07812 SRPBCC START/RHO_alpha 98.1 5.2E-06 1.1E-10 57.7 4.5 41 122-162 2-42 (141)
14 PF10604 Polyketide_cyc2: Poly 98.0 5.3E-05 1.1E-09 55.4 9.1 44 120-163 3-46 (139)
15 cd07814 SRPBCC_CalC_Aha1-like 97.9 2E-05 4.3E-10 58.1 4.9 49 121-169 2-50 (139)
16 cd07824 SRPBCC_6 Ligand-bindin 97.9 1.3E-05 2.8E-10 61.8 3.7 39 121-159 3-41 (146)
17 cd08860 TcmN_ARO-CYC_like N-te 97.9 9.3E-05 2E-09 59.0 8.4 45 121-165 3-47 (146)
18 PF06240 COXG: Carbon monoxide 97.8 7.9E-05 1.7E-09 58.2 6.9 36 123-158 1-36 (140)
19 cd07822 SRPBCC_4 Ligand-bindin 97.7 8.1E-05 1.8E-09 54.4 5.7 47 121-167 2-49 (141)
20 cd07823 SRPBCC_5 Ligand-bindin 97.6 9.5E-05 2.1E-09 57.0 5.1 38 121-158 1-38 (146)
21 cd07818 SRPBCC_1 Ligand-bindin 97.6 7.8E-05 1.7E-09 56.6 4.2 39 119-157 2-40 (150)
22 cd07825 SRPBCC_7 Ligand-bindin 97.6 0.00026 5.6E-09 53.3 6.8 33 120-152 1-33 (144)
23 cd07820 SRPBCC_3 Ligand-bindin 97.5 0.00011 2.4E-09 56.0 3.6 40 122-161 2-41 (137)
24 cd08913 START_STARD14-like Lip 96.9 0.0034 7.3E-08 55.1 7.6 67 102-169 65-131 (240)
25 cd08914 START_STARD15-like Lip 96.8 0.004 8.6E-08 55.0 7.2 69 100-169 60-128 (236)
26 cd08874 START_STARD9-like C-te 96.8 0.0058 1.3E-07 52.2 7.4 70 100-169 26-96 (205)
27 cd08906 START_STARD3-like Chol 96.7 0.0043 9.2E-08 52.5 6.3 66 104-169 34-101 (209)
28 COG3427 Carbon monoxide dehydr 96.6 0.0021 4.5E-08 53.5 3.8 39 120-158 2-40 (146)
29 cd00177 START Lipid-binding ST 96.6 0.022 4.8E-07 44.1 9.0 67 103-169 22-90 (193)
30 cd08898 SRPBCC_CalC_Aha1-like_ 96.6 0.0022 4.8E-08 47.9 3.3 32 120-151 2-33 (145)
31 cd08905 START_STARD1-like Chol 96.5 0.0056 1.2E-07 51.5 5.5 66 104-169 34-101 (209)
32 COG2867 Oligoketide cyclase/li 96.5 0.0059 1.3E-07 51.1 5.4 70 120-204 3-72 (146)
33 cd08893 SRPBCC_CalC_Aha1-like_ 96.4 0.0032 6.9E-08 46.5 3.2 47 121-168 2-48 (136)
34 cd08899 SRPBCC_CalC_Aha1-like_ 96.3 0.0056 1.2E-07 48.4 4.5 39 111-150 4-42 (157)
35 cd08868 START_STARD1_3_like Ch 96.3 0.032 6.8E-07 46.3 8.9 66 104-169 32-100 (208)
36 cd08873 START_STARD14_15-like 96.3 0.024 5.1E-07 50.0 8.3 70 99-169 58-128 (235)
37 cd08901 SRPBCC_CalC_Aha1-like_ 96.2 0.0067 1.5E-07 46.6 4.2 30 121-150 2-31 (136)
38 cd07816 Bet_v1-like Ligand-bin 95.9 0.015 3.1E-07 46.2 4.8 41 120-160 2-44 (148)
39 cd08911 START_STARD7-like Lipi 95.6 0.11 2.3E-06 43.7 9.1 70 100-169 25-98 (207)
40 cd08869 START_RhoGAP C-termina 95.5 0.075 1.6E-06 44.3 7.7 65 103-169 26-93 (197)
41 cd08870 START_STARD2_7-like Li 95.5 0.081 1.8E-06 44.2 7.9 70 100-169 26-103 (209)
42 cd08877 START_2 Uncharacterize 95.1 0.054 1.2E-06 45.1 5.7 66 103-168 29-96 (215)
43 cd08897 SRPBCC_CalC_Aha1-like_ 95.1 0.049 1.1E-06 41.5 5.0 47 121-167 2-53 (133)
44 cd08895 SRPBCC_CalC_Aha1-like_ 95.0 0.07 1.5E-06 41.2 5.8 48 121-168 2-53 (146)
45 cd08896 SRPBCC_CalC_Aha1-like_ 94.9 0.19 4.2E-06 38.8 7.9 48 121-168 2-53 (146)
46 cd08871 START_STARD10-like Lip 94.8 0.14 3.1E-06 42.8 7.6 60 102-161 29-90 (222)
47 PF08327 AHSA1: Activator of H 94.7 0.057 1.2E-06 39.3 4.3 37 128-166 1-38 (124)
48 cd08894 SRPBCC_CalC_Aha1-like_ 94.6 0.11 2.4E-06 39.8 6.0 48 121-168 2-53 (139)
49 cd08891 SRPBCC_CalC Ligand-bin 94.5 0.089 1.9E-06 40.8 5.2 26 121-148 2-27 (149)
50 cd08903 START_STARD5-like Lipi 93.9 0.36 7.8E-06 40.7 8.0 66 103-168 29-98 (208)
51 cd08872 START_STARD11-like Cer 93.8 0.32 6.8E-06 42.3 7.8 70 100-169 30-104 (235)
52 cd08908 START_STARD12-like C-t 93.2 0.25 5.4E-06 42.5 6.1 64 104-169 35-101 (204)
53 COG5637 Predicted integral mem 93.0 0.12 2.7E-06 45.5 3.9 52 117-168 68-119 (217)
54 cd08892 SRPBCC_Aha1 Putative h 92.3 0.23 5.1E-06 37.8 4.3 45 121-167 2-46 (126)
55 cd07826 SRPBCC_CalC_Aha1-like_ 92.0 0.44 9.5E-06 36.9 5.5 46 122-167 3-52 (142)
56 COG3832 Uncharacterized conser 91.7 0.17 3.8E-06 40.4 3.1 34 116-149 5-38 (149)
57 cd08900 SRPBCC_CalC_Aha1-like_ 91.7 0.45 9.8E-06 36.5 5.3 43 125-167 6-53 (143)
58 cd08904 START_STARD6-like Lipi 91.3 1.5 3.2E-05 37.6 8.5 67 104-170 30-98 (204)
59 cd08867 START_STARD4_5_6-like 90.8 1.8 3.8E-05 35.9 8.2 66 103-168 29-98 (206)
60 smart00234 START in StAR and p 89.3 2.3 5E-05 34.3 7.6 63 106-168 30-96 (206)
61 KOG3177 Oligoketide cyclase/li 85.1 0.99 2.1E-05 40.4 3.5 63 125-201 74-136 (227)
62 PF00407 Bet_v_1: Pathogenesis 83.1 4.4 9.5E-05 32.9 6.2 45 118-162 3-49 (151)
63 PTZ00220 Activator of HSP-90 A 79.8 0.72 1.6E-05 35.9 0.6 56 127-184 1-64 (132)
64 cd08910 START_STARD2-like Lipi 79.5 4.8 0.0001 33.9 5.5 68 100-169 29-99 (207)
65 cd08909 START_STARD13-like C-t 74.0 16 0.00034 31.7 7.2 64 104-169 35-101 (205)
66 PF01852 START: START domain; 68.1 41 0.00088 26.9 7.9 51 117-169 44-95 (206)
67 cd08902 START_STARD4-like Lipi 66.5 15 0.00032 32.4 5.4 65 105-169 32-99 (202)
68 TIGR02681 phage_pRha phage reg 64.5 3 6.6E-05 32.7 0.8 57 135-197 28-92 (108)
69 PF08982 DUF1857: Domain of un 57.5 14 0.0003 30.6 3.5 36 128-163 17-53 (149)
70 cd08907 START_STARD8-like C-te 56.5 26 0.00056 30.9 5.2 63 104-169 35-100 (205)
71 cd08863 SRPBCC_DUF1857 DUF1857 53.8 26 0.00057 29.1 4.6 42 129-170 17-60 (141)
72 PLN00188 enhanced disease resi 51.8 90 0.002 32.4 8.8 54 118-171 226-281 (719)
73 smart00166 UBX Domain present 40.7 59 0.0013 23.2 4.2 33 104-138 2-34 (80)
74 PF10698 DUF2505: Protein of u 40.7 23 0.0005 28.5 2.3 23 122-144 2-24 (159)
75 cd01770 p47_UBX p47-like ubiqu 38.2 69 0.0015 23.5 4.3 36 104-141 2-37 (79)
76 PF09969 DUF2203: Uncharacteri 32.5 21 0.00045 28.7 0.8 15 179-193 104-119 (120)
77 KOG4042 Dynactin subunit p27/W 29.3 40 0.00086 29.5 2.1 31 163-203 83-113 (190)
78 cd01767 UBX UBX (ubiquitin reg 26.6 1.5E+02 0.0032 21.0 4.3 33 107-141 3-35 (77)
79 PF00789 UBX: UBX domain; Int 24.7 1.7E+02 0.0036 20.6 4.3 34 104-139 4-37 (82)
80 PF08869 XisI: XisI protein; 23.9 2E+02 0.0044 23.2 5.0 40 132-171 9-48 (111)
81 PF09079 Cdc6_C: CDC6, C termi 23.2 1.1E+02 0.0024 21.9 3.2 30 109-138 55-85 (85)
82 COG4891 Uncharacterized conser 23.0 28 0.0006 27.6 -0.0 43 110-152 23-65 (93)
83 PF14604 SH3_9: Variant SH3 do 22.6 1.3E+02 0.0029 19.8 3.3 28 90-117 3-30 (49)
84 PF00018 SH3_1: SH3 domain; I 21.8 1.3E+02 0.0029 19.2 3.1 28 90-117 4-31 (48)
85 PHA02735 putative DNA polymera 21.3 65 0.0014 32.5 2.1 34 125-158 61-102 (716)
86 cd01774 Faf1_like2_UBX Faf1 ik 21.2 1.6E+02 0.0035 21.9 3.8 33 105-139 3-35 (85)
87 KOG0500 Cyclic nucleotide-gate 20.8 1.5E+02 0.0032 29.9 4.4 47 96-143 367-425 (536)
88 COG4276 Uncharacterized conser 20.4 1.2E+02 0.0025 26.1 3.1 35 124-161 7-41 (153)
No 1
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.09 E-value=1.8e-10 Score=86.69 Aligned_cols=51 Identities=43% Similarity=0.746 Sum_probs=48.1
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEeec
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRL 171 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~QvG~ 171 (205)
|.+++.|+||+++||++|+||+++++|+|.+.+++++++.++..+++|.|+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~ 51 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGK 51 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeee
Confidence 568999999999999999999999999999999999999999989999865
No 2
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.92 E-value=3.9e-09 Score=78.36 Aligned_cols=43 Identities=28% Similarity=0.595 Sum_probs=38.3
Q ss_pred EccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEe
Q 028708 127 IDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQR 169 (205)
Q Consensus 127 I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Qv 169 (205)
|+||+++||++||||+++++|+|.+.+++++++.++..++.+.
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~ 43 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWE 43 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEE
Confidence 7899999999999999999999999999999999997666444
No 3
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.85 E-value=6.7e-09 Score=78.53 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=43.4
Q ss_pred EEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEe
Q 028708 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQR 169 (205)
Q Consensus 122 sAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Qv 169 (205)
..++.|+||+++||++|+||+++++|+|++.+++++++.++...+++.
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~ 49 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELT 49 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEE
Confidence 467899999999999999999999999999999999999877666654
No 4
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.63 E-value=1.6e-07 Score=69.31 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=39.5
Q ss_pred eEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecC
Q 028708 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND 161 (205)
Q Consensus 119 RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~g 161 (205)
..++.++.|+||+++||++|+|++++++++|.+.++++++..+
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~ 44 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDN 44 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCC
Confidence 3688999999999999999999999999999999999987543
No 5
>PRK10724 hypothetical protein; Provisional
Probab=98.55 E-value=2.8e-07 Score=75.14 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=56.5
Q ss_pred eEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEeecccCceeeeeeeecccccccceeeeeEE
Q 028708 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRLTTGHMYYMIWRTEMGFMGRQNVFNAVL 198 (205)
Q Consensus 119 RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~QvG~~tg~~~~m~w~~e~~~~g~q~~f~a~~ 198 (205)
.++..++.|++|++++|+++.|||++++|+|...+++++++.++..+.. +++||.|-..-|.+++
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~---------------l~v~~~g~~~~f~srv 79 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAA---------------VDVSKAGISKTFTTRN 79 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEE---------------EEEeeCCccEEEEEEE
Confidence 3788899999999999999999999999999999999999988864333 3456666666677777
Q ss_pred EEee
Q 028708 199 IVQE 202 (205)
Q Consensus 199 ~~~~ 202 (205)
.++.
T Consensus 80 ~~~~ 83 (158)
T PRK10724 80 QLTS 83 (158)
T ss_pred EecC
Confidence 6653
No 6
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.33 E-value=2.5e-06 Score=68.55 Aligned_cols=67 Identities=22% Similarity=0.449 Sum_probs=58.8
Q ss_pred cCCceEEEEEEcCCCe-eEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCC-EEEEEEe
Q 028708 103 HGDGVCIEIKKLGRNS-RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQR 169 (205)
Q Consensus 103 ~~GeV~V~verL~~~~-RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn-~vrL~Qv 169 (205)
..+++.|..+..+++. ..+.+.+.|++++++||+++.|+|++++|.|++.+++++++.++ ...+++.
T Consensus 24 ~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~ 92 (195)
T cd08876 24 DKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTV 92 (195)
T ss_pred cCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEE
Confidence 4678889888877664 89999999999999999999999999999999999999998776 5556655
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.32 E-value=1.5e-06 Score=63.24 Aligned_cols=40 Identities=18% Similarity=0.455 Sum_probs=36.2
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEec
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN 160 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~ 160 (205)
|..++.|+||+++||++|||+++|+++.|.+..++++...
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~ 40 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDG 40 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCC
Confidence 4578999999999999999999999999999999988643
No 8
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.30 E-value=1.1e-06 Score=64.87 Aligned_cols=47 Identities=13% Similarity=0.405 Sum_probs=41.0
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLY 167 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~ 167 (205)
|..++.|+||++.||++|+|+++++++.|.+.+++++++.+.+..+.
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~ 48 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAK 48 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEe
Confidence 67899999999999999999999999999999999987654454443
No 9
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=98.27 E-value=1.6e-06 Score=65.07 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=40.4
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEE--EEee
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL--YQRR 170 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL--~QvG 170 (205)
+..++.|+||+++||++|+|++++++|+|+ ...+++.+.++..++ .+.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~ 51 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATA 51 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEc
Confidence 356899999999999999999999999999 888888876554333 3554
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=98.21 E-value=3.4e-06 Score=62.27 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=41.2
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEec---CCEEEEE
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN---DNFVRLY 167 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~---gn~vrL~ 167 (205)
++..++.|+||++.||+++||+++++++.|++...+++... |...++.
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~ 52 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMK 52 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEe
Confidence 57889999999999999999999999999999999998765 4444443
No 11
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.15 E-value=1.6e-06 Score=64.28 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=36.9
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEe
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK 159 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer 159 (205)
.+++++.|++|+++||++|||++++++++|++..+++++.
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~ 41 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP 41 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC
Confidence 4678999999999999999999999999999999988863
No 12
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.11 E-value=6.3e-06 Score=60.18 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=38.3
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEec
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKN 160 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~ 160 (205)
+|..++.|+||+++||++|+|+++++++.|++.+.+++...
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~ 42 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGG 42 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCC
Confidence 57889999999999999999999999999999999998764
No 13
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.09 E-value=5.2e-06 Score=57.66 Aligned_cols=41 Identities=29% Similarity=0.593 Sum_probs=37.3
Q ss_pred EEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCC
Q 028708 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN 162 (205)
Q Consensus 122 sAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn 162 (205)
..++.|+||+++||++|+|++++++++|.+..++++...++
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 42 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEG 42 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCc
Confidence 56889999999999999999999999999999999986543
No 14
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=98.03 E-value=5.3e-05 Score=55.43 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=39.1
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCE
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNF 163 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~ 163 (205)
.+..++.|+||+++||++|+|+++++++.|.+..+++++..+..
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~ 46 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPG 46 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTE
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccc
Confidence 57889999999999999999999999999999999999855553
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=97.90 E-value=2e-05 Score=58.06 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=37.6
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEe
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQR 169 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Qv 169 (205)
|..++.|+||+++||++|+|+++++++.|++...++....|+..+....
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~ 50 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMT 50 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEE
Confidence 5678899999999999999999999999974444444455555555443
No 16
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.88 E-value=1.3e-05 Score=61.84 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=35.5
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEe
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK 159 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer 159 (205)
..-...|+||+++||+++||++++++++|++.+++++++
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~ 41 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEP 41 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccC
Confidence 345678999999999999999999999999999999974
No 17
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.86 E-value=9.3e-05 Score=59.00 Aligned_cols=45 Identities=33% Similarity=0.566 Sum_probs=40.8
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVR 165 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vr 165 (205)
..-+|.|+||+++||++++|.+++++|+|..+.++++++.+....
T Consensus 3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~ 47 (146)
T cd08860 3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR 47 (146)
T ss_pred ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE
Confidence 467899999999999999999999999999999999998776443
No 18
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.80 E-value=7.9e-05 Score=58.24 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=32.2
Q ss_pred EEEEEccCHHHHHHHhhCcccccccccCceeeeEEE
Q 028708 123 SKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVE 158 (205)
Q Consensus 123 AqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLe 158 (205)
+++.|++|+++||+.|+|+++|+.-||++.+.+.+.
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~ 36 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG 36 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC
Confidence 578999999999999999999999999999998887
No 19
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.73 E-value=8.1e-05 Score=54.37 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=40.3
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEE-EecCCEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVV-EKNDNFVRLY 167 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVL-er~gn~vrL~ 167 (205)
|..++.|+||+++||+.|+|.++++++.|.+..++.. ...|.+.+..
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~ 49 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFV 49 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEE
Confidence 6789999999999999999999999999999888776 4566666554
No 20
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.64 E-value=9.5e-05 Score=57.02 Aligned_cols=38 Identities=26% Similarity=0.565 Sum_probs=34.2
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVE 158 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLe 158 (205)
|..++.|+|||+.||+.|||+++|+..+|++..-+++.
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~ 38 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG 38 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC
Confidence 35688999999999999999999999999998887765
No 21
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.60 E-value=7.8e-05 Score=56.59 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=34.5
Q ss_pred eEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEE
Q 028708 119 RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVV 157 (205)
Q Consensus 119 RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVL 157 (205)
.++..++.|+||+++||++++|+++++++.|....++.+
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~ 40 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDM 40 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcce
Confidence 468899999999999999999999999999977765544
No 22
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.59 E-value=0.00026 Score=53.25 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.0
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCce
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLA 152 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~ 152 (205)
+|..++.|+||++.||++|||++++++..|+..
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~ 33 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGT 33 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCc
Confidence 478899999999999999999999999999644
No 23
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.48 E-value=0.00011 Score=56.05 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=36.7
Q ss_pred EEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecC
Q 028708 122 RSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND 161 (205)
Q Consensus 122 sAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~g 161 (205)
..++.|+||++.||+.++|.++|+++.|.+.+.+++++.+
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~ 41 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTP 41 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCC
Confidence 5688999999999999999999999999999999997543
No 24
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.95 E-value=0.0034 Score=55.12 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=56.2
Q ss_pred ccCCceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEe
Q 028708 102 LHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQR 169 (205)
Q Consensus 102 L~~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Qv 169 (205)
-...+|.|.... +.+...+.+++.+++|+++++++|.|.++..+.++++.++++|++-+....+||+
T Consensus 65 ~~~~gI~Vyt~~-~s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v 131 (240)
T cd08913 65 SEKNQVRLYTLE-EDKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHV 131 (240)
T ss_pred EccCCEEEEEEe-CCCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEE
Confidence 335788888844 4445677889999999999999999999999999999999999986654567886
No 25
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.83 E-value=0.004 Score=55.02 Aligned_cols=69 Identities=10% Similarity=0.174 Sum_probs=59.6
Q ss_pred ccccCCceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEe
Q 028708 100 QSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQR 169 (205)
Q Consensus 100 ~sL~~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Qv 169 (205)
-+...++|.|.++. +.+...+.+++.+++|++++.++|.|.++-.+.++++.++++|++-+..-.+||.
T Consensus 60 l~~dkdgIkVytr~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~vY~~ 128 (236)
T cd08914 60 VTSTVEKIKIYTLE-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQIYHI 128 (236)
T ss_pred EEEccCCEEEEEec-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcCEEEE
Confidence 56778899999985 5556789999999999999999999999999999999999999986544348885
No 26
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.76 E-value=0.0058 Score=52.22 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=59.6
Q ss_pred ccccCCceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEE-EEEe
Q 028708 100 QSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVR-LYQR 169 (205)
Q Consensus 100 ~sL~~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vr-L~Qv 169 (205)
-+..+.+|.|-.+..++.-..+.+...|++++++||++|-|.++-.+..+++.+++++++-++... ++|+
T Consensus 26 l~~~~~gI~Vy~k~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~ 96 (205)
T cd08874 26 YQCLEKDVVIYYKVFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLV 96 (205)
T ss_pred EEecCCCEEEEEecCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEE
Confidence 455677899999887776677889999999999999999999999999999999999998665544 5554
No 27
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.72 E-value=0.0043 Score=52.52 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCceEEEEEEcCCCeeEEEEEEEEccCHHHHH-HHhhCcccccccccCceeeeEEEecC-CEEEEEEe
Q 028708 104 GDGVCIEIKKLGRNSRRIRSKIEIDASLDTVW-HILTDYEKLADFVPNLAVSQVVEKND-NFVRLYQR 169 (205)
Q Consensus 104 ~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW-~VLTDYErLaeFIPNL~~SrVLer~g-n~vrL~Qv 169 (205)
..+|.|.....++......++..|++|+++++ ++|.|.++.++..+++.++++|++-+ +...+|++
T Consensus 34 ~~gi~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v 101 (209)
T cd08906 34 DNGDTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDV 101 (209)
T ss_pred CCCCEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEE
Confidence 47899999888876688899999999999998 69999999999999999999999865 44455554
No 28
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=96.64 E-value=0.0021 Score=53.53 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=34.3
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEE
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVE 158 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLe 158 (205)
+++++++|++|+++||+-|+|-|++++-||++.+-+...
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g 40 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNG 40 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeecC
Confidence 367899999999999999999999999999998755443
No 29
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.59 E-value=0.022 Score=44.12 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=55.1
Q ss_pred cCCceEEEEEEcCC-CeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCC-EEEEEEe
Q 028708 103 HGDGVCIEIKKLGR-NSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQR 169 (205)
Q Consensus 103 ~~GeV~V~verL~~-~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn-~vrL~Qv 169 (205)
..+++.|-.++.++ +...+.+...|++++++||++|.|.+...++.|++...+++++-++ ...++++
T Consensus 22 ~~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~ 90 (193)
T cd00177 22 EKDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYK 90 (193)
T ss_pred ECCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEE
Confidence 34578888877765 4577899999999999999999999999999999999999998665 3344443
No 30
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.59 E-value=0.0022 Score=47.94 Aligned_cols=32 Identities=38% Similarity=0.552 Sum_probs=29.2
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCc
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNL 151 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL 151 (205)
+|..+|.|+||+++||+++||.+++++..|.-
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~ 33 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVK 33 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhccccc
Confidence 57889999999999999999999999988864
No 31
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.49 E-value=0.0056 Score=51.49 Aligned_cols=66 Identities=14% Similarity=0.306 Sum_probs=56.4
Q ss_pred CCceEEEEEEcCCCeeEEEEEEEEccCHHHHH-HHhhCcccccccccCceeeeEEEecC-CEEEEEEe
Q 028708 104 GDGVCIEIKKLGRNSRRIRSKIEIDASLDTVW-HILTDYEKLADFVPNLAVSQVVEKND-NFVRLYQR 169 (205)
Q Consensus 104 ~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW-~VLTDYErLaeFIPNL~~SrVLer~g-n~vrL~Qv 169 (205)
..++.|..+..++.....+++..|+++++++| .++.|+++.++.++++.++++|++-+ +...++++
T Consensus 34 ~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~ 101 (209)
T cd08905 34 ENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEV 101 (209)
T ss_pred CCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEE
Confidence 55778888888765577889999999999999 88889999999999999999998855 56667775
No 32
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=96.46 E-value=0.0059 Score=51.07 Aligned_cols=70 Identities=20% Similarity=0.397 Sum_probs=58.3
Q ss_pred EEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEeecccCceeeeeeeecccccccceeeeeEEE
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRLTTGHMYYMIWRTEMGFMGRQNVFNAVLI 199 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~QvG~~tg~~~~m~w~~e~~~~g~q~~f~a~~~ 199 (205)
++..+..|+.+++++++...|++.+++|+|--..|+|++++++... =++-.||+|--.=|..+++
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~---------------A~l~V~~k~i~e~F~Trv~ 67 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELI---------------AELDVGFKGIRETFTTRVT 67 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeE---------------EEEEEEhhheeeeeeeeee
Confidence 5677889999999999999999999999999999999999988722 2234566776677999998
Q ss_pred EeecC
Q 028708 200 VQEGT 204 (205)
Q Consensus 200 ~~~~~ 204 (205)
++.+.
T Consensus 68 ~~~~~ 72 (146)
T COG2867 68 LKPTA 72 (146)
T ss_pred ecCch
Confidence 87763
No 33
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=96.43 E-value=0.0032 Score=46.46 Aligned_cols=47 Identities=21% Similarity=0.165 Sum_probs=34.2
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQ 168 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Q 168 (205)
+..++.|+||++.||++|||-+++++..+.... ..-.+.|++.++.-
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~~-~~~~~~G~~~~~~~ 48 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTTV-ESDWKVGSAFEYRR 48 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheeccccc-ccCCcCCCeEEEEe
Confidence 567899999999999999999999999987321 11123455555443
No 34
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.35 E-value=0.0056 Score=48.36 Aligned_cols=39 Identities=28% Similarity=0.516 Sum_probs=33.7
Q ss_pred EEEcCCCeeEEEEEEEEccCHHHHHHHhhCcccccccccC
Q 028708 111 IKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPN 150 (205)
Q Consensus 111 verL~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPN 150 (205)
|.++ ++.+.|...+.|+||++.||++|||-+++++..|.
T Consensus 4 ~~~~-~~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~ 42 (157)
T cd08899 4 VTRL-DGGATLRFERLLPAPIEDVWAALTDPERLARWFAP 42 (157)
T ss_pred eEec-CCCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCC
Confidence 4453 44488999999999999999999999999999984
No 35
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.32 E-value=0.032 Score=46.25 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=56.2
Q ss_pred CC-ceEEEEEEcCCCeeEEEEEEEEccCHHHHHH-HhhCcccccccccCceeeeEEEec-CCEEEEEEe
Q 028708 104 GD-GVCIEIKKLGRNSRRIRSKIEIDASLDTVWH-ILTDYEKLADFVPNLAVSQVVEKN-DNFVRLYQR 169 (205)
Q Consensus 104 ~G-eV~V~verL~~~~RrVsAqI~I~Ap~e~VW~-VLTDYErLaeFIPNL~~SrVLer~-gn~vrL~Qv 169 (205)
.+ +|.|..+..++.....++...+++++++|++ ++.|.+..++..+++.++++|++- ++...++++
T Consensus 32 ~~~~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~ 100 (208)
T cd08868 32 TTWGDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQV 100 (208)
T ss_pred cCCCCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEE
Confidence 45 8999999988866779999999999999985 678999999999999999999985 455556665
No 36
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.26 E-value=0.024 Score=49.99 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=59.2
Q ss_pred cccccCCceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCC-EEEEEEe
Q 028708 99 TQSLHGDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQR 169 (205)
Q Consensus 99 ~~sL~~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn-~vrL~Qv 169 (205)
+-.....+|.|..+. +.+...+.+...++++++++|++|-|.++-.+..+++.++++|++-++ ...++|+
T Consensus 58 ~l~~~k~gIkVytr~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~ 128 (235)
T cd08873 58 TVASSTTSVTLYTLE-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTT 128 (235)
T ss_pred EEEEcCCCEEEEEec-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEE
Confidence 356677899999987 566677889999999999999999999999999999999999998654 3446665
No 37
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.23 E-value=0.0067 Score=46.60 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.9
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccC
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN 150 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPN 150 (205)
+.+++.|+||++.||+++||-++++++.+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~ 31 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFT 31 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhcccccc
Confidence 578999999999999999999999996443
No 38
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=95.90 E-value=0.015 Score=46.16 Aligned_cols=41 Identities=12% Similarity=0.397 Sum_probs=35.1
Q ss_pred EEEEEEEEccCHHHHHHHhhCccc-c-cccccCceeeeEEEec
Q 028708 120 RIRSKIEIDASLDTVWHILTDYEK-L-ADFVPNLAVSQVVEKN 160 (205)
Q Consensus 120 rVsAqI~I~Ap~e~VW~VLTDYEr-L-aeFIPNL~~SrVLer~ 160 (205)
.+..++.|+||+++||+++.|+++ + ..+.|.+.++++++.+
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~ 44 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD 44 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecC
Confidence 478899999999999999999994 5 4577889999998754
No 39
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=95.61 E-value=0.11 Score=43.71 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=57.4
Q ss_pred ccccCCceEEEEEEcCC-CeeEEEEEEEE-ccCHHHHHHHhhCcccccccccCceeeeEEEec-C-CEEEEEEe
Q 028708 100 QSLHGDGVCIEIKKLGR-NSRRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKN-D-NFVRLYQR 169 (205)
Q Consensus 100 ~sL~~GeV~V~verL~~-~~RrVsAqI~I-~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~-g-n~vrL~Qv 169 (205)
....+++|.|-.+..++ +...++|...+ +++++.+.++|.|.+.-.+..+++.+.++|++. + +.-.++++
T Consensus 25 l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~ 98 (207)
T cd08911 25 PFIEKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWE 98 (207)
T ss_pred EEEEcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEE
Confidence 45567889999998884 55678886666 999999999999999999999999999999984 3 45556663
No 40
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=95.47 E-value=0.075 Score=44.27 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=53.5
Q ss_pred cCCceEEEEEEcCCC--eeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCC-EEEEEEe
Q 028708 103 HGDGVCIEIKKLGRN--SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQR 169 (205)
Q Consensus 103 ~~GeV~V~verL~~~--~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn-~vrL~Qv 169 (205)
...+|.|..++.+++ .+..++...|++++++|++.|-|+. .+..+++.++++|++-+. ...++++
T Consensus 26 ~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~ 93 (197)
T cd08869 26 SSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYV 93 (197)
T ss_pred cCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEE
Confidence 467999999999665 4667999999999999999998863 999999999999998653 4445544
No 41
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.45 E-value=0.081 Score=44.17 Aligned_cols=70 Identities=9% Similarity=-0.033 Sum_probs=56.5
Q ss_pred ccccCCc----eEEEEEEcC-CCeeEEEEEEEE-ccCHHHHHHHhhCcccccccccCceeeeEEEecCC--EEEEEEe
Q 028708 100 QSLHGDG----VCIEIKKLG-RNSRRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN--FVRLYQR 169 (205)
Q Consensus 100 ~sL~~Ge----V~V~verL~-~~~RrVsAqI~I-~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn--~vrL~Qv 169 (205)
......+ +.|-.+..+ .+.....+...+ +++++++.++|.|.+.-++..+++.+.++|+..++ ...++.+
T Consensus 26 ~~~~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~ 103 (209)
T cd08870 26 QVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWV 103 (209)
T ss_pred EhhhccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEE
Confidence 3445666 888888777 445678888888 56999999999999999999999999999998765 4455554
No 42
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.10 E-value=0.054 Score=45.07 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=56.4
Q ss_pred cCCceEEEEEEcCCC-eeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCC-EEEEEE
Q 028708 103 HGDGVCIEIKKLGRN-SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQ 168 (205)
Q Consensus 103 ~~GeV~V~verL~~~-~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn-~vrL~Q 168 (205)
...++.|..+..+++ ...+.++..|++|++.+.++|-|.|...+.+|++.+++++++-+. ...+++
T Consensus 29 ~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~ 96 (215)
T cd08877 29 ESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYL 96 (215)
T ss_pred cCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEE
Confidence 356899999988887 688999999999999999999999999999999999999987553 334444
No 43
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.07 E-value=0.049 Score=41.45 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=34.7
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccC-----ceeeeEEEecCCEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN-----LAVSQVVEKNDNFVRLY 167 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPN-----L~~SrVLer~gn~vrL~ 167 (205)
+..++.++||+++||+++||=+++.++.+. ....+.-.+.|+..+..
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~ 53 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYR 53 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEE
Confidence 566789999999999999999999999643 12223334567776664
No 44
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.01 E-value=0.07 Score=41.23 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=32.8
Q ss_pred EEEEEEEccCHHHHHHHhhCccccccccc-Cceee---eEEEecCCEEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVP-NLAVS---QVVEKNDNFVRLYQ 168 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIP-NL~~S---rVLer~gn~vrL~Q 168 (205)
|.....|+||++.||+++||-++|.+..+ +=..+ .+-.+.|+..++..
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~ 53 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSL 53 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEE
Confidence 34556799999999999999999999765 31122 22234566555544
No 45
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.88 E-value=0.19 Score=38.77 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=36.0
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccC----ceeeeEEEecCCEEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPN----LAVSQVVEKNDNFVRLYQ 168 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPN----L~~SrVLer~gn~vrL~Q 168 (205)
+.-+..|+||+++||+++||=+++.+..+. +...+.-.+.|+..++.-
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~ 53 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVM 53 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEE
Confidence 445678999999999999999999998762 344455556777766643
No 46
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=94.84 E-value=0.14 Score=42.80 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=51.1
Q ss_pred ccCCceEEEEEEcCCC-eeEEEEEEEE-ccCHHHHHHHhhCcccccccccCceeeeEEEecC
Q 028708 102 LHGDGVCIEIKKLGRN-SRRIRSKIEI-DASLDTVWHILTDYEKLADFVPNLAVSQVVEKND 161 (205)
Q Consensus 102 L~~GeV~V~verL~~~-~RrVsAqI~I-~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~g 161 (205)
...++|.|..+..+++ ...+.+...+ +++++.++++|.|.+.-.+..|++.++++|++-+
T Consensus 29 ~~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d 90 (222)
T cd08871 29 YNKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLN 90 (222)
T ss_pred EcCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcC
Confidence 3467799998887765 4567887776 6999999999999999999999999999998754
No 47
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=94.69 E-value=0.057 Score=39.30 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=26.4
Q ss_pred ccCHHHHHHHhhCccccccc-ccCceeeeEEEecCCEEEE
Q 028708 128 DASLDTVWHILTDYEKLADF-VPNLAVSQVVEKNDNFVRL 166 (205)
Q Consensus 128 ~Ap~e~VW~VLTDYErLaeF-IPNL~~SrVLer~gn~vrL 166 (205)
+||+++||+++||-++++++ ....... -.+.|+..++
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~~~~~~~--~~~~Gg~~~~ 38 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFTTSEAEM--DFRPGGSFRF 38 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSEEEEEEE--ECSTTEEEEE
T ss_pred CcCHHHHHHHHCCHhHHhhccCCCccee--eeecCCEEEE
Confidence 69999999999999999999 1222222 2256766666
No 48
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=94.65 E-value=0.11 Score=39.77 Aligned_cols=48 Identities=25% Similarity=0.191 Sum_probs=33.8
Q ss_pred EEEEEEEccCHHHHHHHhhCccccccccc-C---ceeeeEEEecCCEEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVP-N---LAVSQVVEKNDNFVRLYQ 168 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIP-N---L~~SrVLer~gn~vrL~Q 168 (205)
+.-+..|+||+++||++|||=+++++..+ . ....++-.+.|+..++.-
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~ 53 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVM 53 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEE
Confidence 45667899999999999999999999874 2 222233345666655433
No 49
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=94.48 E-value=0.089 Score=40.78 Aligned_cols=26 Identities=12% Similarity=0.423 Sum_probs=22.2
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccc
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFV 148 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFI 148 (205)
|+.++.|+||+++||+++|| .|.+-.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~ 27 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWW 27 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhcc
Confidence 67889999999999999999 466554
No 50
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.87 E-value=0.36 Score=40.66 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=51.0
Q ss_pred cCCceEEEEEEc-CCCeeEEEEEEEEccCHHHHHHHhhCcccc--cccccCceeeeEEEecCC-EEEEEE
Q 028708 103 HGDGVCIEIKKL-GRNSRRIRSKIEIDASLDTVWHILTDYEKL--ADFVPNLAVSQVVEKNDN-FVRLYQ 168 (205)
Q Consensus 103 ~~GeV~V~verL-~~~~RrVsAqI~I~Ap~e~VW~VLTDYErL--aeFIPNL~~SrVLer~gn-~vrL~Q 168 (205)
...++.|..++. +.......++..++++++++++.|-|.++- .+..+++.+.++|++-++ ...+++
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~ 98 (208)
T cd08903 29 RTNEVAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT 98 (208)
T ss_pred cCCCEEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE
Confidence 456889998853 222233778889999999999999988765 899999999999998654 444554
No 51
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=93.84 E-value=0.32 Score=42.28 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=60.0
Q ss_pred ccccCCceEEEEEEcCCCee---EEEEEEEEc-cCHHHHHHHhhCcccccccccCceeeeEEEec-CCEEEEEEe
Q 028708 100 QSLHGDGVCIEIKKLGRNSR---RIRSKIEID-ASLDTVWHILTDYEKLADFVPNLAVSQVVEKN-DNFVRLYQR 169 (205)
Q Consensus 100 ~sL~~GeV~V~verL~~~~R---rVsAqI~I~-Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~-gn~vrL~Qv 169 (205)
-...+++|.|..+..++... .+.|...|+ ++++.+.++|-|.+.-.+...++.+.++|++- ++...++|.
T Consensus 30 l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~ 104 (235)
T cd08872 30 LFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQT 104 (235)
T ss_pred EEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEE
Confidence 34468899999998877643 589999999 99999999999999999999999999999874 466778886
No 52
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=93.19 E-value=0.25 Score=42.53 Aligned_cols=64 Identities=20% Similarity=0.158 Sum_probs=53.3
Q ss_pred CCceEEEEEEcCCCe--eEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecC-CEEEEEEe
Q 028708 104 GDGVCIEIKKLGRNS--RRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND-NFVRLYQR 169 (205)
Q Consensus 104 ~GeV~V~verL~~~~--RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~g-n~vrL~Qv 169 (205)
...+++..+|..++. +..++.+.|+|++++|.+.|-|. -.+..+++.++++|++-+ +.-.+||+
T Consensus 35 ~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~ 101 (204)
T cd08908 35 SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYV 101 (204)
T ss_pred CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEE
Confidence 456788888887764 78999999999999999999777 689999999999999865 44556665
No 53
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=92.95 E-value=0.12 Score=45.55 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=45.0
Q ss_pred CeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEE
Q 028708 117 NSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQ 168 (205)
Q Consensus 117 ~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Q 168 (205)
+-..++.+|.|++|.++||++--|.|+|+.++-.|.+-+|++.+..+..+.-
T Consensus 68 ~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkrSrW~~~a 119 (217)
T COG5637 68 KPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKRSRWKANA 119 (217)
T ss_pred CceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCccceeEcC
Confidence 3477888999999999999999999999999999999999987765544443
No 54
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=92.31 E-value=0.23 Score=37.80 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=32.6
Q ss_pred EEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEE
Q 028708 121 IRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLY 167 (205)
Q Consensus 121 VsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~ 167 (205)
+.-...|+||++.||+++||=+.|.++..... .+=.+.|+..++.
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~--~~d~~~GG~~~~~ 46 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPA--KVDAKVGGKFSLF 46 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCc--eecCCCCCEEEEe
Confidence 45567999999999999999999999875432 2333455555544
No 55
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=91.99 E-value=0.44 Score=36.93 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=33.8
Q ss_pred EEEEEEccCHHHHHHHhhCcccccccccCc----eeeeEEEecCCEEEEE
Q 028708 122 RSKIEIDASLDTVWHILTDYEKLADFVPNL----AVSQVVEKNDNFVRLY 167 (205)
Q Consensus 122 sAqI~I~Ap~e~VW~VLTDYErLaeFIPNL----~~SrVLer~gn~vrL~ 167 (205)
..+-.++||+++||+++||=+++++....- ...++=.+.|+..++.
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~ 52 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYV 52 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEE
Confidence 445689999999999999999999998643 2233334567666654
No 56
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=91.74 E-value=0.17 Score=40.36 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=30.2
Q ss_pred CCeeEEEEEEEEccCHHHHHHHhhCccccccccc
Q 028708 116 RNSRRIRSKIEIDASLDTVWHILTDYEKLADFVP 149 (205)
Q Consensus 116 ~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIP 149 (205)
...+.+.....|+||++.||+.|||=+.|++...
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~ 38 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALTDPELLARWFM 38 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC
Confidence 3456778888999999999999999999999887
No 57
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=91.70 E-value=0.45 Score=36.48 Aligned_cols=43 Identities=9% Similarity=-0.062 Sum_probs=30.8
Q ss_pred EEEccCHHHHHHHhhCcccccccccC-----ceeeeEEEecCCEEEEE
Q 028708 125 IEIDASLDTVWHILTDYEKLADFVPN-----LAVSQVVEKNDNFVRLY 167 (205)
Q Consensus 125 I~I~Ap~e~VW~VLTDYErLaeFIPN-----L~~SrVLer~gn~vrL~ 167 (205)
-.++||+++||++|||=++|++.+.. +...+.-.+.|+..+..
T Consensus 6 r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~ 53 (143)
T cd08900 6 RTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSR 53 (143)
T ss_pred EEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEE
Confidence 46999999999999999999988743 23333334456555543
No 58
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=91.30 E-value=1.5 Score=37.63 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=56.5
Q ss_pred CCceEEEEEEc-CCCeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEe-cCCEEEEEEee
Q 028708 104 GDGVCIEIKKL-GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK-NDNFVRLYQRR 170 (205)
Q Consensus 104 ~GeV~V~verL-~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer-~gn~vrL~QvG 170 (205)
..++.|..+.. +....-..++..|++++++||+.|-|-+...+.=|++.+.++|++ ++++..++++.
T Consensus 30 ~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~ 98 (204)
T cd08904 30 SKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTIT 98 (204)
T ss_pred CCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEec
Confidence 36788888764 555677788889999999999999999999999999999999998 56777777663
No 59
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=90.77 E-value=1.8 Score=35.87 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=51.3
Q ss_pred cCCceEEEEEEcCCC-eeEEEEEEEEccCHHHHHHHhhC--cccccccccCceeeeEEEecC-CEEEEEE
Q 028708 103 HGDGVCIEIKKLGRN-SRRIRSKIEIDASLDTVWHILTD--YEKLADFVPNLAVSQVVEKND-NFVRLYQ 168 (205)
Q Consensus 103 ~~GeV~V~verL~~~-~RrVsAqI~I~Ap~e~VW~VLTD--YErLaeFIPNL~~SrVLer~g-n~vrL~Q 168 (205)
...++.|..++.++. ...+.+...|++++++|.++|-| .+...+.-+++.++++|++-+ +...++.
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~ 98 (206)
T cd08867 29 TVKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRT 98 (206)
T ss_pred cCCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEE
Confidence 345677777654333 25689999999999999999998 888899999999999999854 4444444
No 60
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=89.33 E-value=2.3 Score=34.27 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=47.4
Q ss_pred ceEEEEEEcCC--CeeEEEEEEEEccCHHH-HHHHhhCcccccccccCceeeeEEEecCC-EEEEEE
Q 028708 106 GVCIEIKKLGR--NSRRIRSKIEIDASLDT-VWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQ 168 (205)
Q Consensus 106 eV~V~verL~~--~~RrVsAqI~I~Ap~e~-VW~VLTDYErLaeFIPNL~~SrVLer~gn-~vrL~Q 168 (205)
++.+.-+..++ .....++...|+++++. +=++|.|.+...++.|++.+.++|++-++ ...+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~ 96 (206)
T smart00234 30 GDEVRSILSPGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHY 96 (206)
T ss_pred cceEEEEccCCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEE
Confidence 33444444443 56889999999999997 55799999999999999999999997543 333343
No 61
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=85.13 E-value=0.99 Score=40.42 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=50.5
Q ss_pred EEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEeecccCceeeeeeeecccccccceeeeeEEEEe
Q 028708 125 IEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRLTTGHMYYMIWRTEMGFMGRQNVFNAVLIVQ 201 (205)
Q Consensus 125 I~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~QvG~~tg~~~~m~w~~e~~~~g~q~~f~a~~~~~ 201 (205)
=.|..+++.+++|..|-+.+.+|||--++|.|.+++.+.-. .=.+|.||-+--+-|..+|+.+
T Consensus 74 rligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~--------------kA~LeVGFk~l~E~y~S~Vt~~ 136 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPL--------------KADLEVGFKPLDERYTSNVTCV 136 (227)
T ss_pred hhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCc--------------eeeEEecCcccchhheeeeEEe
Confidence 35789999999999999999999999999999998853221 2346888887766677777654
No 62
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=83.14 E-value=4.4 Score=32.93 Aligned_cols=45 Identities=22% Similarity=0.486 Sum_probs=32.3
Q ss_pred eeEEEEEEEEccCHHHHHHHhhC-cccccccccCceee-eEEEecCC
Q 028708 118 SRRIRSKIEIDASLDTVWHILTD-YEKLADFVPNLAVS-QVVEKNDN 162 (205)
Q Consensus 118 ~RrVsAqI~I~Ap~e~VW~VLTD-YErLaeFIPNL~~S-rVLer~gn 162 (205)
...+..++.+++|++.+|+++.+ =..|++.+|+...| ++++-+|+
T Consensus 3 ~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg 49 (151)
T PF00407_consen 3 VGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGG 49 (151)
T ss_dssp EEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSS
T ss_pred cEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCC
Confidence 35678899999999999999996 33456667666555 57776653
No 63
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=79.82 E-value=0.72 Score=35.94 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=34.9
Q ss_pred EccCHHHHHHHhhCccccccc-ccCceeeeEEEecCCEEEEEEeec-------ccCceeeeeeeec
Q 028708 127 IDASLDTVWHILTDYEKLADF-VPNLAVSQVVEKNDNFVRLYQRRL-------TTGHMYYMIWRTE 184 (205)
Q Consensus 127 I~Ap~e~VW~VLTDYErLaeF-IPNL~~SrVLer~gn~vrL~QvG~-------~tg~~~~m~w~~e 184 (205)
++||+++||+++||=+.++++ .+... .+=.+.|+..++..... .....|-|-|+.+
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~~~~--~~d~~~GG~f~~~~~~~~G~~~ev~pp~rlv~tw~~~ 64 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLGSPA--EMDAKVGGKFSLFNGSVEGEFTELEKPKKIVQKWRFR 64 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcCCCc--cccCCcCCEEEEecCceEEEEEEEcCCCEEEEEEecC
Confidence 479999999999999999987 44222 22235566555543211 1133466677765
No 64
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=79.48 E-value=4.8 Score=33.95 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=52.2
Q ss_pred ccccCCceEEEEEEcCCC-eeEEEEEEEEc-cCHHHHHHHhhCcccccccccCceeeeEEEec-CCEEEEEEe
Q 028708 100 QSLHGDGVCIEIKKLGRN-SRRIRSKIEID-ASLDTVWHILTDYEKLADFVPNLAVSQVVEKN-DNFVRLYQR 169 (205)
Q Consensus 100 ~sL~~GeV~V~verL~~~-~RrVsAqI~I~-Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~-gn~vrL~Qv 169 (205)
-...+++|.|-.+..++. ....+|...++ ++++.+.++|-|.+.-.+..+++.+ ++++. .+...++++
T Consensus 29 l~~~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~ 99 (207)
T cd08910 29 LLVESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWE 99 (207)
T ss_pred EEEecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEE
Confidence 455677899998866654 57788899998 7999999999999999999999886 45433 233445554
No 65
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=73.97 E-value=16 Score=31.74 Aligned_cols=64 Identities=19% Similarity=0.142 Sum_probs=49.3
Q ss_pred CCceEEEEEEcCCC--eeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCC-EEEEEEe
Q 028708 104 GDGVCIEIKKLGRN--SRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDN-FVRLYQR 169 (205)
Q Consensus 104 ~GeV~V~verL~~~--~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn-~vrL~Qv 169 (205)
..++++...|..++ .+..++.+.|++++++|=+.+.++ -.+...++.+++++++-+. .-+++.+
T Consensus 35 ~~~~e~~ykK~~d~~~lk~~r~~~ei~~~p~~VL~~vl~~--R~~WD~~~~~~~~ie~ld~~tdi~~y~ 101 (205)
T cd08909 35 SDNTELAYKKVGDGNPLRLWKVSVEVEAPPSVVLNRVLRE--RHLWDEDFLQWKVVETLDKQTEVYQYV 101 (205)
T ss_pred cCCeEEEEecCCCCCceEEEEEEEEeCCCHHHHHHHHHhh--HhhHHhhcceeEEEEEeCCCcEEEEEE
Confidence 45677777777665 478899999999999998877773 6778899999999998554 4444444
No 66
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=68.05 E-value=41 Score=26.88 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=41.9
Q ss_pred CeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEe-cCCEEEEEEe
Q 028708 117 NSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEK-NDNFVRLYQR 169 (205)
Q Consensus 117 ~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer-~gn~vrL~Qv 169 (205)
....+++...|+++++.+...|-|-.. ++-+++.+.++|+. +++...+++.
T Consensus 44 ~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~ 95 (206)
T PF01852_consen 44 PIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFV 95 (206)
T ss_dssp SCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEE
T ss_pred cceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEE
Confidence 578899999999999988888887776 99999999999998 5555555544
No 67
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=66.50 E-value=15 Score=32.38 Aligned_cols=65 Identities=8% Similarity=0.048 Sum_probs=49.5
Q ss_pred CceEEEEEEc-CCCeeEEEEEEEEccCHHHHHHHhhCcccccccccCceeeeEEEecCCEEEE--EEe
Q 028708 105 DGVCIEIKKL-GRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRL--YQR 169 (205)
Q Consensus 105 GeV~V~verL-~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL--~Qv 169 (205)
+++.|..++- +.+..--+++..|+..++.||+.|.+=.+..+.=|++.+.++|++=+....| +.+
T Consensus 32 ~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt 99 (202)
T cd08902 32 KDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTT 99 (202)
T ss_pred CCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEc
Confidence 7888888844 3344444555677899999999999988889999999999999985444333 444
No 68
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=64.51 E-value=3 Score=32.71 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=39.7
Q ss_pred HHHhhCccccc------ccc-cCceeeeEEEecCCEEEEEEeecccCceeeeeeeeccccccccee-eeeE
Q 028708 135 WHILTDYEKLA------DFV-PNLAVSQVVEKNDNFVRLYQRRLTTGHMYYMIWRTEMGFMGRQNV-FNAV 197 (205)
Q Consensus 135 W~VLTDYErLa------eFI-PNL~~SrVLer~gn~vrL~QvG~~tg~~~~m~w~~e~~~~g~q~~-f~a~ 197 (205)
.+||-|-++|. +|- .|...|.....+|.....|+..+ .|++|.+ |||.|.+-+ |+++
T Consensus 28 ~~VlR~Ir~l~~~~~~~~f~~~~F~~~~y~~~~g~~~~~Y~ltk-dgf~lLv-----mg~tg~ka~~fK~~ 92 (108)
T TIGR02681 28 DNVIRDIKVLLIEANETEFGQLNFEETQYQDEQNKKQPMFNLTE-DGFTIVA-----MGYTTPKAMKMKEK 92 (108)
T ss_pred HHHHHHHHHHHhhhccccccccCceeeEEEcCCCcEEEEEEEcC-CceEEEE-----ecCChHHHHHHHHH
Confidence 45666666662 443 45677777777787788999988 7777766 999998665 5444
No 69
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=57.46 E-value=14 Score=30.58 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=23.3
Q ss_pred ccCHHHHHHHhh-CcccccccccCceeeeEEEecCCE
Q 028708 128 DASLDTVWHILT-DYEKLADFVPNLAVSQVVEKNDNF 163 (205)
Q Consensus 128 ~Ap~e~VW~VLT-DYErLaeFIPNL~~SrVLer~gn~ 163 (205)
....++||+-|- -..+=..|+|.|.+++|+++.++.
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~ 53 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTV 53 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSE
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCCCe
Confidence 346789999774 567778899999999999998654
No 70
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=56.53 E-value=26 Score=30.90 Aligned_cols=63 Identities=24% Similarity=0.311 Sum_probs=46.7
Q ss_pred CCceEEEEEEcCCCe--eEEEEEEEEcc-CHHHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEe
Q 028708 104 GDGVCIEIKKLGRNS--RRIRSKIEIDA-SLDTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQR 169 (205)
Q Consensus 104 ~GeV~V~verL~~~~--RrVsAqI~I~A-p~e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~Qv 169 (205)
..++.|..++.+++. +-..+.+.|++ |.+.+.++|-| - ..-=++|.++++|++=+....|.|=
T Consensus 35 ~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d-R--~~WD~~m~e~~~Ie~Ld~n~dI~yY 100 (205)
T cd08907 35 PDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE-R--HLWDEDLLHSQVIEALENNTEVYHY 100 (205)
T ss_pred CCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc-h--hhhhHHHHhhhhheeecCCCEEEEE
Confidence 567899999988764 78888888877 66677888988 2 2334799999999985544445544
No 71
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=53.76 E-value=26 Score=29.07 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=32.8
Q ss_pred cCHHHHHHHhh-CcccccccccCceeeeEEEecCCEE-EEEEee
Q 028708 129 ASLDTVWHILT-DYEKLADFVPNLAVSQVVEKNDNFV-RLYQRR 170 (205)
Q Consensus 129 Ap~e~VW~VLT-DYErLaeFIPNL~~SrVLer~gn~v-rL~QvG 170 (205)
...+++|+-|- -=++=..|+|.|.+++|+++.++.+ |-.+-|
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l~Rel~f~ 60 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVLERELTFG 60 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCCEEEEEEEEC
Confidence 56899999774 4556678999999999999998743 666654
No 72
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=51.76 E-value=90 Score=32.43 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=45.7
Q ss_pred eeEEEEEEEEccCHHHHHHHhhCcc-cccccccCceeeeEEEe-cCCEEEEEEeec
Q 028708 118 SRRIRSKIEIDASLDTVWHILTDYE-KLADFVPNLAVSQVVEK-NDNFVRLYQRRL 171 (205)
Q Consensus 118 ~RrVsAqI~I~Ap~e~VW~VLTDYE-rLaeFIPNL~~SrVLer-~gn~vrL~QvG~ 171 (205)
.+.+.|.-.|+|++++||+.|-+.+ .-.+.=.++.+-++|++ +++...+|++..
T Consensus 226 ~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~ 281 (719)
T PLN00188 226 SRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQ 281 (719)
T ss_pred CceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEec
Confidence 4788999999999999999999887 66667789999999987 677788888844
No 73
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=40.74 E-value=59 Score=23.25 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=27.5
Q ss_pred CCceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHh
Q 028708 104 GDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHIL 138 (205)
Q Consensus 104 ~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VL 138 (205)
++...|++ |+++|.| +..++..+.+.+.|++-+
T Consensus 2 ~~~~~I~i-RlPdG~r-i~~~F~~~~tl~~v~~~v 34 (80)
T smart00166 2 SDQCRLQI-RLPDGSR-LVRRFPSSDTLRTVYEFV 34 (80)
T ss_pred CCeEEEEE-EcCCCCE-EEEEeCCCCcHHHHHHHH
Confidence 35677888 6788854 888899999999999999
No 74
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=40.70 E-value=23 Score=28.52 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEEEEEccCHHHHHHHhhCcccc
Q 028708 122 RSKIEIDASLDTVWHILTDYEKL 144 (205)
Q Consensus 122 sAqI~I~Ap~e~VW~VLTDYErL 144 (205)
..++.+++|+++||++++|=+-+
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~ 24 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYW 24 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHH
Confidence 45778999999999999995433
No 75
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=38.20 E-value=69 Score=23.52 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhhCc
Q 028708 104 GDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDY 141 (205)
Q Consensus 104 ~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLTDY 141 (205)
++...|++ |+++|.| +..++....++..||+-+-..
T Consensus 2 ~p~t~iqi-RlpdG~r-~~~rF~~~~tv~~l~~~v~~~ 37 (79)
T cd01770 2 EPTTSIQI-RLADGKR-LVQKFNSSHRVSDVRDFIVNA 37 (79)
T ss_pred CCeeEEEE-ECCCCCE-EEEEeCCCCcHHHHHHHHHHh
Confidence 45677888 7788854 556899999999999998753
No 76
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=32.49 E-value=21 Score=28.65 Aligned_cols=15 Identities=33% Similarity=0.904 Sum_probs=11.2
Q ss_pred eeee-eccccccccee
Q 028708 179 MIWR-TEMGFMGRQNV 193 (205)
Q Consensus 179 m~w~-~e~~~~g~q~~ 193 (205)
++|| ++.||+|+|-|
T Consensus 104 ~~wH~~d~GFaGRkpi 119 (120)
T PF09969_consen 104 AYWHGLDEGFAGRKPI 119 (120)
T ss_pred eeeccCCcccccCccC
Confidence 4455 49999999864
No 77
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=29.30 E-value=40 Score=29.53 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=26.8
Q ss_pred EEEEEEeecccCceeeeeeeecccccccceeeeeEEEEeec
Q 028708 163 FVRLYQRRLTTGHMYYMIWRTEMGFMGRQNVFNAVLIVQEG 203 (205)
Q Consensus 163 ~vrL~QvG~~tg~~~~m~w~~e~~~~g~q~~f~a~~~~~~~ 203 (205)
..-++|+|| .-||..||..|+|..|..|..|
T Consensus 83 t~NvFeVgc----------~s~A~kvGd~NVieskayvg~g 113 (190)
T KOG4042|consen 83 TWNVFEVGC----------KSSAKKVGDRNVIESKAYVGDG 113 (190)
T ss_pred ccceEEeec----------hhhhhhhcCcceEeeeeEecCC
Confidence 456899999 4589999999999999998766
No 78
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=26.58 E-value=1.5e+02 Score=20.98 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhhCc
Q 028708 107 VCIEIKKLGRNSRRIRSKIEIDASLDTVWHILTDY 141 (205)
Q Consensus 107 V~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLTDY 141 (205)
+.|++ |+++|. ++..++....+.+.|++-+-..
T Consensus 3 t~i~i-RlpdG~-~~~~~F~~~~tl~~l~~fv~~~ 35 (77)
T cd01767 3 TKIQI-RLPDGK-RLEQRFNSTHKLSDVRDFVESN 35 (77)
T ss_pred EEEEE-EcCCCC-EEEEEeCCCCCHHHHHHHHHHc
Confidence 45777 668885 4888999999999999998643
No 79
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=24.66 E-value=1.7e+02 Score=20.62 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=27.9
Q ss_pred CCceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhh
Q 028708 104 GDGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILT 139 (205)
Q Consensus 104 ~GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLT 139 (205)
.+.+.|++ |+++|. ++...+.-..+.+.|++.+-
T Consensus 4 ~~~~~I~v-RlpdG~-~l~~~F~~~~tl~~l~~~v~ 37 (82)
T PF00789_consen 4 SDVVRIQV-RLPDGS-RLQRRFPKSDTLQDLYDFVE 37 (82)
T ss_dssp SSEEEEEE-EETTST-EEEEEEETTSBHHHHHHHHH
T ss_pred CCEEEEEE-ECCCCC-EEEEEECCcchHHHHHHHHH
Confidence 45677888 568874 78999999999999999874
No 80
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=23.87 E-value=2e+02 Score=23.17 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHhhCcccccccccCceeeeEEEecCCEEEEEEeec
Q 028708 132 DTVWHILTDYEKLADFVPNLAVSQVVEKNDNFVRLYQRRL 171 (205)
Q Consensus 132 e~VW~VLTDYErLaeFIPNL~~SrVLer~gn~vrL~QvG~ 171 (205)
+-+=++|++|.++..--+.+..--+...+.+.-.|.++|-
T Consensus 9 ~iI~~iL~~ya~~~~~~~~ie~~~ifD~e~dhYll~~~GW 48 (111)
T PF08869_consen 9 QIIKQILEEYAQIKPSNGDIETQLIFDTERDHYLLMSVGW 48 (111)
T ss_dssp HHHHHHHHHHHHHCHSSTCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEEeCCCCEEEEEEeeE
Confidence 3455799999999877888887777788889999999976
No 81
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=23.19 E-value=1.1e+02 Score=21.91 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=22.1
Q ss_pred EEEEEcCCC-eeEEEEEEEEccCHHHHHHHh
Q 028708 109 IEIKKLGRN-SRRIRSKIEIDASLDTVWHIL 138 (205)
Q Consensus 109 V~verL~~~-~RrVsAqI~I~Ap~e~VW~VL 138 (205)
|+.++...| .+...-.+.+..+|+.|.++|
T Consensus 55 i~~~~~~~G~~~G~~~~~~l~~d~~~v~~aL 85 (85)
T PF09079_consen 55 IESERKGRGRGRGRTREISLNVDPEDVLEAL 85 (85)
T ss_dssp EEEEEEE-TT-CTEEEEEEECSSSHHHHHHH
T ss_pred eEEEeecCCCCCCeEEEEEecCCHHHHHhhC
Confidence 344454444 588889999999999999986
No 82
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=23.01 E-value=28 Score=27.60 Aligned_cols=43 Identities=21% Similarity=0.136 Sum_probs=32.4
Q ss_pred EEEEcCCCeeEEEEEEEEccCHHHHHHHhhCcccccccccCce
Q 028708 110 EIKKLGRNSRRIRSKIEIDASLDTVWHILTDYEKLADFVPNLA 152 (205)
Q Consensus 110 ~verL~~~~RrVsAqI~I~Ap~e~VW~VLTDYErLaeFIPNL~ 152 (205)
++.++.+-....-+.....+.+|.+|...|++.+-..|.|=|+
T Consensus 23 eL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~Gvlv 65 (93)
T COG4891 23 ELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFSGVLV 65 (93)
T ss_pred heeeecccccceEEeeEEEEEEeecCCccceeeccceecceee
Confidence 4555555555566667778889999999999999999877554
No 83
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=22.59 E-value=1.3e+02 Score=19.82 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=20.4
Q ss_pred ccccCCCcccccccCCceEEEEEEcCCC
Q 028708 90 LSEEGSGSQTQSLHGDGVCIEIKKLGRN 117 (205)
Q Consensus 90 ~~~~g~~~s~~sL~~GeV~V~verL~~~ 117 (205)
+.|.+....+-++..|++..-+++..++
T Consensus 3 ~~y~~~~~dELs~~~Gd~i~v~~~~~~~ 30 (49)
T PF14604_consen 3 YDYEAQDPDELSFKKGDVITVLEKSDDG 30 (49)
T ss_dssp SCBCSSSTTB-EB-TTEEEEEEEESSTS
T ss_pred ccCCCCCcCEeeEcCCCEEEEEEeCCCC
Confidence 4677777788999999999888885554
No 84
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=21.77 E-value=1.3e+02 Score=19.23 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=21.7
Q ss_pred ccccCCCcccccccCCceEEEEEEcCCC
Q 028708 90 LSEEGSGSQTQSLHGDGVCIEIKKLGRN 117 (205)
Q Consensus 90 ~~~~g~~~s~~sL~~GeV~V~verL~~~ 117 (205)
|.|.+....+-++..|++.+-+++..++
T Consensus 4 ydf~~~~~~eLs~~~Gd~i~v~~~~~~~ 31 (48)
T PF00018_consen 4 YDFDAEDPDELSFKKGDIIEVLEKSDDG 31 (48)
T ss_dssp SCBETSSTTBSEB-TTEEEEEEEESSSS
T ss_pred eeeCCCCCCEEeEECCCEEEEEEecCCC
Confidence 5677777788899999999888887664
No 85
>PHA02735 putative DNA polymerase type B; Provisional
Probab=21.26 E-value=65 Score=32.53 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=22.3
Q ss_pred EEEccCHHHHHHHhhCccccc--------ccccCceeeeEEE
Q 028708 125 IEIDASLDTVWHILTDYEKLA--------DFVPNLAVSQVVE 158 (205)
Q Consensus 125 I~I~Ap~e~VW~VLTDYErLa--------eFIPNL~~SrVLe 158 (205)
=+-....++||++||||..-+ +|=-|.+-+.+.+
T Consensus 61 d~~~l~a~~i~~~ltd~k~rs~in~wynldfdan~il~~i~s 102 (716)
T PHA02735 61 DREELDAEQIMDALTDHKARSNINIWYNLDFDANAILNGICS 102 (716)
T ss_pred cHHhhcHHHHHHHHhhhhhcccceeeEeccccHHHHHHhhcC
Confidence 344667899999999997543 3444554444444
No 86
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.23 E-value=1.6e+02 Score=21.93 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=27.1
Q ss_pred CceEEEEEEcCCCeeEEEEEEEEccCHHHHHHHhh
Q 028708 105 DGVCIEIKKLGRNSRRIRSKIEIDASLDTVWHILT 139 (205)
Q Consensus 105 GeV~V~verL~~~~RrVsAqI~I~Ap~e~VW~VLT 139 (205)
+.+.|++ |+++|. |+..++....+.+.|.+-+-
T Consensus 3 ~~~~I~i-Rlp~G~-Rl~rrF~~~~tl~~l~~fv~ 35 (85)
T cd01774 3 DTVKIVF-KLPNGT-RVERRFLFTQSLRVIHDFLF 35 (85)
T ss_pred ceEEEEE-ECCCCC-EEEEEeCCCCcHHHHHHHHH
Confidence 4677888 778885 77788889999999999984
No 87
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.80 E-value=1.5e+02 Score=29.93 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=30.8
Q ss_pred CcccccccCCceE--EEEEEcCC---CeeEEEEEEE-------EccCHHHHHHHhhCccc
Q 028708 96 GSQTQSLHGDGVC--IEIKKLGR---NSRRIRSKIE-------IDASLDTVWHILTDYEK 143 (205)
Q Consensus 96 ~~s~~sL~~GeV~--V~verL~~---~~RrVsAqI~-------I~Ap~e~VW~VLTDYEr 143 (205)
+.....|.+|.+. |.+=.+++ +.|| +|.|+ .-.+.+.+|++|++|..
T Consensus 367 ~t~~~~L~~G~~FGEisIlni~g~~~gNRR-tanvrSvGYSDlfvLskdDl~~aL~eYP~ 425 (536)
T KOG0500|consen 367 VTVFVTLKAGSVFGEISILNIKGNKNGNRR-TANVRSVGYSDLFVLSKDDLWEALSEYPD 425 (536)
T ss_pred cEEEEEecCCceeeeeEEEEEcCcccCCcc-eeeeeeeccceeeEeeHHHHHHHHHhCCH
Confidence 4567888999887 44444455 2232 23332 23589999999999975
No 88
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=20.44 E-value=1.2e+02 Score=26.11 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.5
Q ss_pred EEEEccCHHHHHHHhhCcccccccccCceeeeEEEecC
Q 028708 124 KIEIDASLDTVWHILTDYEKLADFVPNLAVSQVVEKND 161 (205)
Q Consensus 124 qI~I~Ap~e~VW~VLTDYErLaeFIPNL~~SrVLer~g 161 (205)
+.+|+||+|.||+--+.=++|...-|--+ |+-+.|
T Consensus 7 ~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g 41 (153)
T COG4276 7 RTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLG 41 (153)
T ss_pred eeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCC
Confidence 46899999999999999999999988877 555554
Done!