BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028709
         (205 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
           From Moorella Thermoacetica
 pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
           From Moorella Thermoacetica
          Length = 557

 Score = 30.4 bits (67), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 123 KSVEYMPFFL---SLANFANGC---IWTAYALIKLDIYILVSNGLGAILGFIQLVIYACY 176
           +++E  P F+     AN A+GC   I T  AL KL  Y++   G GA LG  +     C 
Sbjct: 261 QTLENTPAFIHGGPFANIAHGCNSIIATKTAL-KLADYVVTEAGFGADLGAEKFYDVKCR 319

Query: 177 Y 177
           Y
Sbjct: 320 Y 320


>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
           N10-formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
           N10-formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
           N10-Formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
           N10-Formyltetrahydrofolate Synthetase From Moorella
           Thermoacetica
 pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
           Synthetase
 pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
           Synthetase
 pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Folate
 pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Folate
 pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
           With Adp And Formylphosphate
 pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
           With Adp And Formylphosphate
 pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Zd9331 And Formylphosphate
 pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Zd9331 And Formylphosphate
 pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Atpgs
 pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
           With Atpgs
          Length = 557

 Score = 30.4 bits (67), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 123 KSVEYMPFFL---SLANFANGC---IWTAYALIKLDIYILVSNGLGAILGFIQLVIYACY 176
           +++E  P F+     AN A+GC   I T  AL KL  Y++   G GA LG  +     C 
Sbjct: 261 QTLENTPAFIHGGPFANIAHGCNSIIATKTAL-KLADYVVTEAGFGADLGAEKFYDVKCR 319

Query: 177 Y 177
           Y
Sbjct: 320 Y 320


>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
          Length = 212

 Score = 30.0 bits (66), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 112 PLTIWHKVITTKSVEYMPFFLSLANFANGCIWTA 145
           P+T  H V   ++VE  P    +A F  GC W A
Sbjct: 22  PVTAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGA 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.145    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,786,190
Number of Sequences: 62578
Number of extensions: 205707
Number of successful extensions: 300
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 49 (23.5 bits)