Query 028709
Match_columns 205
No_of_seqs 190 out of 1111
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 15:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 3.2E-36 6.9E-41 256.8 9.4 173 1-194 53-225 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 2.8E-23 6E-28 151.6 7.9 86 96-181 2-87 (87)
3 KOG1623 Multitransmembrane pro 99.5 1E-14 2.2E-19 125.0 6.3 90 92-181 4-94 (243)
4 COG4095 Uncharacterized conser 99.2 2.4E-11 5.2E-16 88.5 5.4 83 94-179 5-87 (89)
5 PF03083 MtN3_slv: Sugar efflu 98.2 4.5E-07 9.7E-12 65.8 1.8 41 1-50 47-87 (87)
6 PF04193 PQ-loop: PQ loop repe 97.9 2.8E-05 6.2E-10 52.5 5.3 56 96-154 4-59 (61)
7 TIGR00951 2A43 Lysosomal Cysti 95.2 0.025 5.5E-07 48.1 4.1 49 95-146 5-53 (220)
8 TIGR00951 2A43 Lysosomal Cysti 93.0 1.6 3.4E-05 37.2 10.6 79 94-172 136-215 (220)
9 PF03650 MPC: Uncharacterised 91.9 0.016 3.5E-07 44.9 -2.5 69 110-183 32-102 (119)
10 smart00679 CTNS Repeated motif 91.9 0.1 2.2E-06 30.4 1.5 27 111-137 2-28 (32)
11 PF10688 Imp-YgjV: Bacterial i 88.8 4.6 9.9E-05 32.7 9.2 37 134-170 118-154 (163)
12 KOG1589 Uncharacterized conser 87.2 0.13 2.8E-06 39.3 -0.8 60 122-181 43-104 (118)
13 PRK01021 lpxB lipid-A-disaccha 80.2 7.6 0.00016 38.0 7.7 52 122-173 164-215 (608)
14 COG4095 Uncharacterized conser 76.5 0.82 1.8E-05 33.7 0.0 28 2-32 50-77 (89)
15 KOG4314 Predicted carbohydrate 70.3 17 0.00037 31.2 6.5 57 88-144 126-183 (290)
16 KOG2489 Transmembrane protein 69.1 59 0.0013 31.4 10.3 109 79-198 451-574 (592)
17 PHA02246 hypothetical protein 68.7 22 0.00048 29.1 6.5 59 108-167 120-180 (192)
18 KOG3211 Predicted endoplasmic 63.5 10 0.00023 32.3 3.9 74 108-181 153-227 (230)
19 PF07578 LAB_N: Lipid A Biosyn 61.6 5.9 0.00013 28.1 1.8 44 123-166 23-66 (72)
20 KOG2913 Predicted membrane pro 60.9 6.8 0.00015 34.3 2.4 81 96-180 164-249 (260)
21 COG3952 Predicted membrane pro 60.4 16 0.00034 28.0 3.9 63 120-182 48-110 (113)
22 KOG2913 Predicted membrane pro 56.1 28 0.00061 30.5 5.4 53 99-151 11-63 (260)
23 PF15102 TMEM154: TMEM154 prot 50.7 27 0.00059 28.0 4.1 30 154-183 60-89 (146)
24 PRK11387 S-methylmethionine tr 38.8 83 0.0018 29.1 6.1 92 93-187 363-466 (471)
25 TIGR00910 2A0307_GadC glutamat 35.9 2.2E+02 0.0048 26.8 8.5 13 168-180 452-464 (507)
26 PF06946 Phage_holin_5: Phage 35.6 38 0.00082 25.2 2.6 58 130-187 35-92 (93)
27 PF05961 Chordopox_A13L: Chord 32.9 30 0.00064 24.3 1.5 22 161-182 8-29 (68)
28 PF13572 DUF4134: Domain of un 30.3 2.3E+02 0.005 21.1 6.4 50 64-113 45-94 (98)
29 PF01034 Syndecan: Syndecan do 30.1 21 0.00046 24.7 0.5 32 165-197 23-54 (64)
30 PF07857 DUF1632: CEO family ( 28.9 1.4E+02 0.0031 26.0 5.5 53 127-179 80-138 (254)
31 PF01102 Glycophorin_A: Glycop 28.2 7.7 0.00017 30.2 -2.2 15 168-182 81-95 (122)
32 KOG3145 Cystine transporter Cy 27.9 4.2E+02 0.0091 24.2 8.2 49 111-159 278-330 (372)
33 PRK15419 proline:sodium sympor 26.5 2E+02 0.0043 27.1 6.4 33 134-171 435-467 (502)
34 PF06027 DUF914: Eukaryotic pr 26.5 4.9E+02 0.011 23.6 11.8 57 118-179 252-309 (334)
35 COG0833 LysP Amino acid transp 26.0 6.3E+02 0.014 24.7 10.1 70 121-190 432-514 (541)
36 TIGR03518 ABC_perm_GldF glidin 25.5 1.9E+02 0.0041 24.4 5.6 39 94-132 48-86 (240)
37 KOG3211 Predicted endoplasmic 25.5 1.2E+02 0.0026 26.0 4.2 57 95-154 32-88 (230)
38 PHA03049 IMV membrane protein; 23.8 51 0.0011 23.0 1.4 22 161-182 8-29 (68)
39 KOG2325 Predicted transporter/ 21.0 4.3E+02 0.0092 25.4 7.5 23 158-180 210-232 (488)
40 PF07690 MFS_1: Major Facilita 20.8 4.5E+02 0.0098 21.8 7.1 40 111-150 105-145 (352)
41 PRK10746 putative transport pr 20.7 3.6E+02 0.0078 25.0 6.9 88 93-183 359-455 (461)
42 PRK10580 proY putative proline 20.7 3.6E+02 0.0079 24.7 6.9 30 92-121 355-384 (457)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=256.82 Aligned_cols=173 Identities=41% Similarity=0.719 Sum_probs=143.3
Q ss_pred CeeeeecccccccCCeEEEeehhHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028709 1 MFWILYGLPVVHPDSTLVITINAVGLALELIYLSIFCFTNICFYFARRTCHLITCLILAYLQTVVGLGLLAEVIFVGVIA 80 (205)
Q Consensus 1 ~lWl~YG~~~l~~~~~~v~~vN~~G~~~~~~Y~~if~~~~~~~~ya~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
++|++||+ +++|...++.+|++|++++++|+.+|+. ||++|+.. ... ....+..+++..
T Consensus 53 ~lWl~YG~--~~~~d~llitIN~~G~~ie~~Yi~~f~~------ya~~k~~~----------~~~---~~~~~~~~~~~i 111 (243)
T KOG1623|consen 53 SLWLYYGL--LKVHDYLLITINGIGLVIETVYISIFLY------YAPKKKTV----------KIV---LALVLGVIGLII 111 (243)
T ss_pred HHHHHhhh--hccCceEEEEEehhcHHHHHHHHHHHhe------ecCchhee----------Eee---ehHHHHHHHHHH
Confidence 47999994 5664457889999999999999999999 99988741 111 112233444455
Q ss_pred hhhhhhccccccchhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeCCeeEEechh
Q 028709 81 IITFLAFHTHTSRSMFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKLDIYILVSNG 160 (205)
Q Consensus 81 ~~~~~~~~~~~~~~~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~ 160 (205)
+++....|+++.+.+.+|.+|++++++||+|||..+++|+|+||+|.||++++++.++++..|++||++++|.+|.+||+
T Consensus 112 ~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~ 191 (243)
T KOG1623|consen 112 LLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNV 191 (243)
T ss_pred HHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeEEEcccH
Confidence 56666778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhheEEEeCCCCCCCCCCCCCCCCC
Q 028709 161 LGAILGFIQLVIYACYYKSTPKKGNDDDFVKPKP 194 (205)
Q Consensus 161 ~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~ 194 (205)
+|..++..|+.+|++|++++.+.....+..++++
T Consensus 192 iG~~l~~~QL~Ly~~y~~~~~~~~~~~~~~~~~~ 225 (243)
T KOG1623|consen 192 LGFLLGLIQLILYFKYPKTTEKIVPPKQNKKDVV 225 (243)
T ss_pred HHHHHHHHHHHHhhhcCCCcccccccccccCCcc
Confidence 9999999999999999988754433333333333
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.89 E-value=2.8e-23 Score=151.58 Aligned_cols=86 Identities=37% Similarity=0.554 Sum_probs=83.9
Q ss_pred hhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeCCeeEEechhHHHHHHHHHhhheEE
Q 028709 96 FVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKLDIYILVSNGLGAILGFIQLVIYAC 175 (205)
Q Consensus 96 ~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~~~ql~l~~~ 175 (205)
++|.+|.+.++++++||++++++++|+||++++|++|++++++||.+|+.||++++|++++++|++|.+++..|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 028709 176 YYKSTP 181 (205)
Q Consensus 176 y~~~~~ 181 (205)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998874
No 3
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.53 E-value=1e-14 Score=125.01 Aligned_cols=90 Identities=23% Similarity=0.468 Sum_probs=85.5
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeC-CeeEEechhHHHHHHHHHh
Q 028709 92 SRSMFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKL-DIYILVSNGLGAILGFIQL 170 (205)
Q Consensus 92 ~~~~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~-D~fI~~pN~~G~~l~~~ql 170 (205)
.....+|..|.++++.+|.+|+++++|+.|+||+|+.+..|++++++||.+|+.||...+ |..++..|.+|+++.++++
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999888 8889999999999999999
Q ss_pred hheEEEeCCCC
Q 028709 171 VIYACYYKSTP 181 (205)
Q Consensus 171 ~l~~~y~~~~~ 181 (205)
..|+.|.++|+
T Consensus 84 ~~f~~ya~~k~ 94 (243)
T KOG1623|consen 84 SIFLYYAPKKK 94 (243)
T ss_pred HHHheecCchh
Confidence 99999998876
No 4
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.4e-11 Score=88.51 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=73.8
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeCCeeEEechhHHHHHHHHHhhhe
Q 028709 94 SMFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKLDIYILVSNGLGAILGFIQLVIY 173 (205)
Q Consensus 94 ~~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~~~ql~l~ 173 (205)
.++.|..|+..+..+| +||+.+++|+||+++++++++......+++|+.||++++|.++...|.++..++..-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 5667888877777554 9999999999999999999999999999999999999999999999999999999888777
Q ss_pred EEEeCC
Q 028709 174 ACYYKS 179 (205)
Q Consensus 174 ~~y~~~ 179 (205)
..|..+
T Consensus 82 I~~~~k 87 (89)
T COG4095 82 IKYILK 87 (89)
T ss_pred HHHHHh
Confidence 666443
No 5
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=98.24 E-value=4.5e-07 Score=65.80 Aligned_cols=41 Identities=29% Similarity=0.761 Sum_probs=37.1
Q ss_pred CeeeeecccccccCCeEEEeehhHHHHHHHHHHHHHHhhccccccccccc
Q 028709 1 MFWILYGLPVVHPDSTLVITINAVGLALELIYLSIFCFTNICFYFARRTC 50 (205)
Q Consensus 1 ~lWl~YG~~~l~~~~~~v~~vN~~G~~~~~~Y~~if~~~~~~~~ya~~k~ 50 (205)
.+|+.|| ++.+|+ +++.+|.+|.+++.+|+.+|++ |+++|+
T Consensus 47 ~~W~~YG--~l~~d~-~i~~~N~~g~~~~~~~~~~~~~------y~~~~~ 87 (87)
T PF03083_consen 47 VLWLIYG--ILINDW-PIIVPNVFGLVLSIIYLVVYYI------YPSKKK 87 (87)
T ss_pred cHhhhhh--hhcCCe-eEEeeHHHHHHHHHHHHhheEE------eCCCCC
Confidence 3799999 788887 7899999999999999999999 988774
No 6
>PF04193 PQ-loop: PQ loop repeat
Probab=97.90 E-value=2.8e-05 Score=52.55 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeCCee
Q 028709 96 FVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKLDIY 154 (205)
Q Consensus 96 ~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~D~f 154 (205)
.+|.++.+ +...+.+||+.+.+|+||++++++......+.++.+|+.|++..++.+
T Consensus 4 ~~g~i~~~---~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 4 ILGIISIV---LWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHH---HHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555544 445778999999999999999999999999999999999999887643
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=95.18 E-value=0.025 Score=48.07 Aligned_cols=49 Identities=16% Similarity=0.019 Sum_probs=41.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhh
Q 028709 95 MFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAY 146 (205)
Q Consensus 95 ~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~Y 146 (205)
+.+|....+... .+-+||+.+..|+||++++++......+.....|..|
T Consensus 5 ~~lG~~~~~~~~---~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 5 QILGWGYVAAWS---ISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHH---HHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 455665555554 5679999999999999999999999999999999999
No 8
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=92.98 E-value=1.6 Score=37.16 Aligned_cols=79 Identities=10% Similarity=-0.053 Sum_probs=55.6
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhce-eCCeeEEechhHHHHHHHHHhhh
Q 028709 94 SMFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALI-KLDIYILVSNGLGAILGFIQLVI 172 (205)
Q Consensus 94 ~~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l-~~D~fI~~pN~~G~~l~~~ql~l 172 (205)
.+.+..+..+--.....+-+||++.-.|+|||+.++..-....+..+..=+.-... .+|...+.--.++..+..+.+.=
T Consensus 136 l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q 215 (220)
T TIGR00951 136 LAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQ 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444455557889999999999999999999888888876666555553 35666666666777776665443
No 9
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=91.94 E-value=0.016 Score=44.92 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=57.9
Q ss_pred HhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhcee--CCeeEEechhHHHHHHHHHhhheEEEeCCCCCC
Q 028709 110 ASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIK--LDIYILVSNGLGAILGFIQLVIYACYYKSTPKK 183 (205)
Q Consensus 110 ~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~--~D~fI~~pN~~G~~l~~~ql~l~~~y~~~~~~~ 183 (205)
++++.++ +|..|.++..+..+.++.+.+|+-|++.+ +|+.+...|+.-...+.+|+.=++.|...+++.
T Consensus 32 iA~i~D~-----~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~ 102 (119)
T PF03650_consen 32 IAGIADM-----KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKE 102 (119)
T ss_pred eeehhhc-----CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 4455554 57999999999999999999999999988 578888889999999999999888887655443
No 10
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=91.88 E-value=0.1 Score=30.41 Aligned_cols=27 Identities=26% Similarity=0.143 Sum_probs=22.5
Q ss_pred hHHHHhhhhhcCCcccccChHHHHHHH
Q 028709 111 SPLTIWHKVITTKSVEYMPFFLSLANF 137 (205)
Q Consensus 111 SPL~~i~~VirtKst~~l~~~~~~~~~ 137 (205)
+-+|++.+.+|+||++++++...+..+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~ 28 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWL 28 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHH
Confidence 468999999999999999987765443
No 11
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=88.83 E-value=4.6 Score=32.73 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhceeCCeeEEechhHHHHHHHHHh
Q 028709 134 LANFANGCIWTAYALIKLDIYILVSNGLGAILGFIQL 170 (205)
Q Consensus 134 ~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~~~ql 170 (205)
...++++.+|+.|++..++++...-|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998888888777766553
No 12
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.24 E-value=0.13 Score=39.33 Aligned_cols=60 Identities=28% Similarity=0.377 Sum_probs=52.7
Q ss_pred CCcccccChHHHHHHHHHHHHHhhhhcee--CCeeEEechhHHHHHHHHHhhheEEEeCCCC
Q 028709 122 TKSVEYMPFFLSLANFANGCIWTAYALIK--LDIYILVSNGLGAILGFIQLVIYACYYKSTP 181 (205)
Q Consensus 122 tKst~~l~~~~~~~~~~n~~lW~~YG~l~--~D~fI~~pN~~G~~l~~~ql~l~~~y~~~~~ 181 (205)
+|..|.++..-.++.+...+.|.-|.+++ +|+.....|.+=.+.+.+|+.=.+.|....+
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~ 104 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQK 104 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999999988 6899999999999999999999888855443
No 13
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=80.19 E-value=7.6 Score=38.02 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=43.3
Q ss_pred CCcccccChHHHHHHHHHHHHHhhhhceeCCeeEEechhHHHHHHHHHhhhe
Q 028709 122 TKSVEYMPFFLSLANFANGCIWTAYALIKLDIYILVSNGLGAILGFIQLVIY 173 (205)
Q Consensus 122 tKst~~l~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~~~ql~l~ 173 (205)
++..+.+|...-..+++.+.+=++|++..+|.-.+...+.|.+.-.=.+.+.
T Consensus 164 ~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~li 215 (608)
T PRK01021 164 YNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRIA 215 (608)
T ss_pred hcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHHH
Confidence 3444578888889999999999999999999888899999998877665443
No 14
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=76.48 E-value=0.82 Score=33.65 Aligned_cols=28 Identities=32% Similarity=0.752 Sum_probs=24.1
Q ss_pred eeeeecccccccCCeEEEeehhHHHHHHHHH
Q 028709 2 FWILYGLPVVHPDSTLVITINAVGLALELIY 32 (205)
Q Consensus 2 lWl~YG~~~l~~~~~~v~~vN~~G~~~~~~Y 32 (205)
+|+.|| ++.+|- |+...|.++..++.+=
T Consensus 50 lwliyg--ILi~~l-Pii~aN~i~~il~liI 77 (89)
T COG4095 50 LWLIYG--ILINDL-PIIIANIISFILSLII 77 (89)
T ss_pred HHHHHH--HHHccC-cchhHHHHHHHHHHHH
Confidence 699999 788885 8999999999998763
No 15
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=70.30 E-value=17 Score=31.16 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=47.5
Q ss_pred cccccchhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHH-HHHHh
Q 028709 88 HTHTSRSMFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFAN-GCIWT 144 (205)
Q Consensus 88 ~~~~~~~~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n-~~lW~ 144 (205)
.|.+...+.+|+.|.+.+-.|-+--=..+|+++-+.|-++.+..++..+++| |+.|+
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 4677788999999999999888777788899999999999988888877777 44454
No 16
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=69.13 E-value=59 Score=31.37 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=72.2
Q ss_pred HhhhhhhhccccccchhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhcee--------
Q 028709 79 IAIITFLAFHTHTSRSMFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIK-------- 150 (205)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~-------- 150 (205)
..+++.+..+.+.-...++..+...+-..-|.-.+||+---.|-||++.+|..+..==++|.+.==++++++
T Consensus 451 ~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl 530 (592)
T KOG2489|consen 451 GAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRL 530 (592)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 445666666544455678888888888888899999999999999999999999888888876443343332
Q ss_pred ----CCeeEEechhHHHHHHHHHhhheEEEeCCCCCC---CCCCCCCCCCCCccc
Q 028709 151 ----LDIYILVSNGLGAILGFIQLVIYACYYKSTPKK---GNDDDFVKPKPTEVQ 198 (205)
Q Consensus 151 ----~D~fI~~pN~~G~~l~~~ql~l~~~y~~~~~~~---~~~~~~~~~~~~~~~ 198 (205)
+| .|+ ++++.--|.||-++.+. ++..|.+..+|.|+|
T Consensus 531 ~CfRDD-IVF----------lIYLYQRWlYpVD~tRvNEfG~sgeee~~~~~~ve 574 (592)
T KOG2489|consen 531 ACFRDD-IVF----------LIYLYQRWLYPVDKTRVNEFGESGEEEAGTPLPVE 574 (592)
T ss_pred hhhccc-eEE----------EeeehhhhccccChhhhhhcccCccccCCCcCccc
Confidence 33 221 23455568888776555 333344444433333
No 17
>PHA02246 hypothetical protein
Probab=68.69 E-value=22 Score=29.10 Aligned_cols=59 Identities=17% Similarity=0.051 Sum_probs=36.0
Q ss_pred HHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeCC--eeEEechhHHHHHHH
Q 028709 108 MYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKLD--IYILVSNGLGAILGF 167 (205)
Q Consensus 108 ~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~D--~fI~~pN~~G~~l~~ 167 (205)
...+-.+|+.+-+|||++|+.+..+++.....-.+ +.......+ .+|++......++-+
T Consensus 120 IiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~-L~~~m~Lthv~~hIiiTEf~N~iLiL 180 (192)
T PHA02246 120 IILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS-LIVSMVLTHTYVHIIATEFVNFVLIL 180 (192)
T ss_pred HHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH-HHHHHhhhCCcceeeHHHHHHHHHHH
Confidence 44566899999999999999987766544333222 223333333 567766555544433
No 18
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=63.54 E-value=10 Score=32.33 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=59.0
Q ss_pred HHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhcee-CCeeEEechhHHHHHHHHHhhheEEEeCCCC
Q 028709 108 MYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIK-LDIYILVSNGLGAILGFIQLVIYACYYKSTP 181 (205)
Q Consensus 108 ~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~-~D~fI~~pN~~G~~l~~~ql~l~~~y~~~~~ 181 (205)
.-.|-++++..-.|+|+++.+++.....++..|..=..+.+.. +|.-+...-.+..+++..-.+-.+.|+++++
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 3477889999999999999999999999999999999999865 5677777777777777666666666665543
No 19
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=61.56 E-value=5.9 Score=28.09 Aligned_cols=44 Identities=14% Similarity=0.273 Sum_probs=35.1
Q ss_pred CcccccChHHHHHHHHHHHHHhhhhceeCCeeEEechhHHHHHH
Q 028709 123 KSVEYMPFFLSLANFANGCIWTAYALIKLDIYILVSNGLGAILG 166 (205)
Q Consensus 123 Kst~~l~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~ 166 (205)
+..+.+|...-..++..+.+=++||+..+|...+...+.|.+..
T Consensus 23 ~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 23 AKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 33356788888999999999999999999987666677776553
No 20
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=60.89 E-value=6.8 Score=34.32 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=48.7
Q ss_pred hhhh-HHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhce---eCCe-eEEechhHHHHHHHHHh
Q 028709 96 FVGI-LCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALI---KLDI-YILVSNGLGAILGFIQL 170 (205)
Q Consensus 96 ~lG~-~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l---~~D~-fI~~pN~~G~~l~~~ql 170 (205)
.+|. ++.+.+.+-.++++||+..-+|.|+++++++.++... +..=..|+.- ..|. ...- -.-+..+-+...
T Consensus 164 ~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~---~~~n~~y~~s~~~~~n~~w~~~-~~~~~~~D~~~~ 239 (260)
T KOG2913|consen 164 SLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFN---SLGNTTYILSSYLVTNLPWLVD-SKGTIYLDIFIF 239 (260)
T ss_pred chHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHH---HccccccccccccccCCccccc-CCcchhHHHHHH
Confidence 3444 4556667778999999999999999999998655444 4344466655 1221 1111 112334444455
Q ss_pred hheEEEeCCC
Q 028709 171 VIYACYYKST 180 (205)
Q Consensus 171 ~l~~~y~~~~ 180 (205)
.-|+.|++.+
T Consensus 240 ~q~~~~~~~~ 249 (260)
T KOG2913|consen 240 LQFFNYRASK 249 (260)
T ss_pred HHHHHhhccc
Confidence 5566665555
No 21
>COG3952 Predicted membrane protein [Function unknown]
Probab=60.36 E-value=16 Score=27.95 Aligned_cols=63 Identities=11% Similarity=0.181 Sum_probs=51.7
Q ss_pred hcCCcccccChHHHHHHHHHHHHHhhhhceeCCeeEEechhHHHHHHHHHhhheEEEeCCCCC
Q 028709 120 ITTKSVEYMPFFLSLANFANGCIWTAYALIKLDIYILVSNGLGAILGFIQLVIYACYYKSTPK 182 (205)
Q Consensus 120 irtKst~~l~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~~~ql~l~~~y~~~~~~ 182 (205)
.+.++.+.+|.+.--++.+.+.+=+.|-+-.+|..=+..|+.|+..++..+-+...-++.++.
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~~~~~ 110 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERRWKPT 110 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhcccCc
Confidence 466777889999999999999999999999999777788999999988887666555554443
No 22
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=56.14 E-value=28 Score=30.49 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeC
Q 028709 99 ILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKL 151 (205)
Q Consensus 99 ~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~ 151 (205)
.++++.+++--.+=.|++.+..|+|+.+++|+.+.+.-.+....=+.|..+.+
T Consensus 11 ~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 11 ILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 34444444445666899999999999999999888666666655556655554
No 23
>PF15102 TMEM154: TMEM154 protein family
Probab=50.69 E-value=27 Score=28.05 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=19.9
Q ss_pred eEEechhHHHHHHHHHhhheEEEeCCCCCC
Q 028709 154 YILVSNGLGAILGFIQLVIYACYYKSTPKK 183 (205)
Q Consensus 154 fI~~pN~~G~~l~~~ql~l~~~y~~~~~~~ 183 (205)
.|++|-+++.++-+.-+++..+|+|+|.|.
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 456787777766666677777776655443
No 24
>PRK11387 S-methylmethionine transporter; Provisional
Probab=38.82 E-value=83 Score=29.12 Aligned_cols=92 Identities=8% Similarity=-0.050 Sum_probs=40.8
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHhhhhhcCCc-c----c-------ccChHHHHHHHHHHHHHhhhhceeCCeeEEechh
Q 028709 93 RSMFVGILCDIFNIIMYASPLTIWHKVITTKS-V----E-------YMPFFLSLANFANGCIWTAYALIKLDIYILVSNG 160 (205)
Q Consensus 93 ~~~~lG~~~~v~si~~~~SPL~~i~~VirtKs-t----~-------~l~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~ 160 (205)
.-..+..+++...+..|..+.....+..|++. . + ..|..+.+....+. +...+.. .|..-.....
T Consensus 363 ~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~-~~~~~~~~~~ 439 (471)
T PRK11387 363 VFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCL--LACVGLA-FDPSQRIALW 439 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHH--HHHHHHH-hhHHHHHHHH
Confidence 33445556666666667766443322222211 1 1 22344555544443 3333321 1111011233
Q ss_pred HHHHHHHHHhhheEEEeCCCCCCCCCC
Q 028709 161 LGAILGFIQLVIYACYYKSTPKKGNDD 187 (205)
Q Consensus 161 ~G~~l~~~ql~l~~~y~~~~~~~~~~~ 187 (205)
.|..+-..-+..|..++|++++..+|+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T PRK11387 440 CGIPFVALCYGAYYLTQRLKRNMTQEA 466 (471)
T ss_pred HHHHHHHHHHHHHHHhccccccccHhh
Confidence 555555566666766666554444433
No 25
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=35.93 E-value=2.2e+02 Score=26.81 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=6.8
Q ss_pred HHhhheEEEeCCC
Q 028709 168 IQLVIYACYYKST 180 (205)
Q Consensus 168 ~ql~l~~~y~~~~ 180 (205)
.-...|..+.|++
T Consensus 452 ~~~~~y~~~~~~~ 464 (507)
T TIGR00910 452 LPFIIYALHDKKG 464 (507)
T ss_pred HHHHHHHHhcccc
Confidence 3445666655553
No 26
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=35.63 E-value=38 Score=25.20 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHhhhhceeCCeeEEechhHHHHHHHHHhhheEEEeCCCCCCCCCC
Q 028709 130 FFLSLANFANGCIWTAYALIKLDIYILVSNGLGAILGFIQLVIYACYYKSTPKKGNDD 187 (205)
Q Consensus 130 ~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~~~ql~l~~~y~~~~~~~~~~~ 187 (205)
..|.+...+..++=+++..+.+|.-+..--..|.+.++..-.++=.+.+|.++.+|+.
T Consensus 35 ~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~ 92 (93)
T PF06946_consen 35 WIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDD 92 (93)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCC
Confidence 4555666666666666777776654333334588888888888877777766665553
No 27
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=32.87 E-value=30 Score=24.26 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhheEEEeCCCCC
Q 028709 161 LGAILGFIQLVIYACYYKSTPK 182 (205)
Q Consensus 161 ~G~~l~~~ql~l~~~y~~~~~~ 182 (205)
++++..++-+++|.+|.+++..
T Consensus 8 i~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 5667778888999999887644
No 28
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=30.35 E-value=2.3e+02 Score=21.09 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchhhhhhHHHHHHHHHHHhHH
Q 028709 64 VVGLGLLAEVIFVGVIAIITFLAFHTHTSRSMFVGILCDIFNIIMYASPL 113 (205)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~v~si~~~~SPL 113 (205)
++...+.+...+++.+-+|.-+...++|..+...++.++++-+..-..-|
T Consensus 45 ~l~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~~l 94 (98)
T PF13572_consen 45 KLMYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAATVL 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666665556666788899988877665544433
No 29
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=30.14 E-value=21 Score=24.71 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=2.1
Q ss_pred HHHHHhhheEEEeCCCCCCCCCCCCCCCCCCcc
Q 028709 165 LGFIQLVIYACYYKSTPKKGNDDDFVKPKPTEV 197 (205)
Q Consensus 165 l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~~~~ 197 (205)
+..+-++++++|+-+++.. ..-+..++|+++.
T Consensus 23 l~ailLIlf~iyR~rkkdE-GSY~l~e~K~s~~ 54 (64)
T PF01034_consen 23 LFAILLILFLIYRMRKKDE-GSYDLDEPKPSNY 54 (64)
T ss_dssp --------------S-------SS--S------
T ss_pred HHHHHHHHHHHHHHHhcCC-CCccCCCCCcccc
Confidence 3455677888887655443 3445555655543
No 30
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=28.85 E-value=1.4e+02 Score=25.99 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=31.1
Q ss_pred ccChHHHHHHHHHH---HHHhhhhceeCC---eeEEechhHHHHHHHHHhhheEEEeCC
Q 028709 127 YMPFFLSLANFANG---CIWTAYALIKLD---IYILVSNGLGAILGFIQLVIYACYYKS 179 (205)
Q Consensus 127 ~l~~~~~~~~~~n~---~lW~~YG~l~~D---~fI~~pN~~G~~l~~~ql~l~~~y~~~ 179 (205)
.+..-+.+-+..|+ -.|-.||+.--| ..--.-|.+|+.+.++-..+|..-.++
T Consensus 80 GLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 80 GLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 34444444444443 345557765332 333344999999999998888655443
No 31
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.24 E-value=7.7 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=6.1
Q ss_pred HHhhheEEEeCCCCC
Q 028709 168 IQLVIYACYYKSTPK 182 (205)
Q Consensus 168 ~ql~l~~~y~~~~~~ 182 (205)
+-++.|++.|++|+.
T Consensus 81 Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 81 ILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhccC
Confidence 335555555555443
No 32
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=27.90 E-value=4.2e+02 Score=24.16 Aligned_cols=49 Identities=10% Similarity=-0.246 Sum_probs=29.1
Q ss_pred hHHHHhhhhhcCCcccccChHH----HHHHHHHHHHHhhhhceeCCeeEEech
Q 028709 111 SPLTIWHKVITTKSVEYMPFFL----SLANFANGCIWTAYALIKLDIYILVSN 159 (205)
Q Consensus 111 SPL~~i~~VirtKst~~l~~~~----~~~~~~n~~lW~~YG~l~~D~fI~~pN 159 (205)
--+||...-.++||+++.|.-= +-.+.++-+.-.+-..-.+||--+..|
T Consensus 278 KYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gn 330 (372)
T KOG3145|consen 278 KYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGN 330 (372)
T ss_pred HhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcC
Confidence 3468888888999999887532 233444444444444444555444444
No 33
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=26.49 E-value=2e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhceeCCeeEEechhHHHHHHHHHhh
Q 028709 134 LANFANGCIWTAYALIKLDIYILVSNGLGAILGFIQLV 171 (205)
Q Consensus 134 ~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~~l~~~ql~ 171 (205)
+.+.+....|..++.. -..+...|.+++..-..
T Consensus 435 i~G~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v 467 (502)
T PRK15419 435 IIGALTVIVWKQFGWL-----GLYEIIPGFIFGSIGIV 467 (502)
T ss_pred HHHHHHHHHHHHhhhc-----chhHhHHHHHHHHHHHH
Confidence 3444555667655422 12345566666664433
No 34
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=26.48 E-value=4.9e+02 Score=23.56 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=30.0
Q ss_pred hhhcCCcccccChHHHHHHHHHHHHH-hhhhceeCCeeEEechhHHHHHHHHHhhheEEEeCC
Q 028709 118 KVITTKSVEYMPFFLSLANFANGCIW-TAYALIKLDIYILVSNGLGAILGFIQLVIYACYYKS 179 (205)
Q Consensus 118 ~VirtKst~~l~~~~~~~~~~n~~lW-~~YG~l~~D~fI~~pN~~G~~l~~~ql~l~~~y~~~ 179 (205)
-++|.-|+-.+++.+.. +-.| ++.|+...+..+-..-.+|.++-..-+++|..-+++
T Consensus 252 ~~l~~ssAt~~nLsLLT-----sd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 252 IVLRMSSATFFNLSLLT-----SDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHhCccceeehHHHH-----hhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 35666666666654433 3334 244444444333233456776666666666655543
No 35
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=25.95 E-value=6.3e+02 Score=24.67 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=35.8
Q ss_pred cCCccccc-------ChHHHHHHHHHHHHHhhhhc--eeCCeeE---EechhHHHHHHHHHhhheEEEeCCCC-CCCCCC
Q 028709 121 TTKSVEYM-------PFFLSLANFANGCIWTAYAL--IKLDIYI---LVSNGLGAILGFIQLVIYACYYKSTP-KKGNDD 187 (205)
Q Consensus 121 rtKst~~l-------~~~~~~~~~~n~~lW~~YG~--l~~D~fI---~~pN~~G~~l~~~ql~l~~~y~~~~~-~~~~~~ 187 (205)
|.|+.+++ |..+..+.++|++.=+.-|+ ..++.+. ++.|-+|+.+-+....-|-+|.|.++ ++.++.
T Consensus 432 QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k~~~~~~l~~i 511 (541)
T COG0833 432 QGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKKTTKFVRLEEI 511 (541)
T ss_pred cCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEecccccccHHHc
Confidence 34555555 45566777777766554333 2222222 23455666665655556666655332 444444
Q ss_pred CCC
Q 028709 188 DFV 190 (205)
Q Consensus 188 ~~~ 190 (205)
|.+
T Consensus 512 Dl~ 514 (541)
T COG0833 512 DLD 514 (541)
T ss_pred Ccc
Confidence 444
No 36
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=25.50 E-value=1.9e+02 Score=24.44 Aligned_cols=39 Identities=5% Similarity=0.127 Sum_probs=29.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHH
Q 028709 94 SMFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFL 132 (205)
Q Consensus 94 ~~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~ 132 (205)
.+.-++.....-+.++..|+-+++.+-|+|+.+.+..++
T Consensus 48 ~~~~~~f~~~~~~~~~~~p~l~~~~ia~Er~~GTle~Ll 86 (240)
T TIGR03518 48 ADLTPFFSLAPWVFLFLIPAITMRSFAEERKLGTLELLL 86 (240)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 334455556566888999999999999999888765443
No 37
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=25.48 E-value=1.2e+02 Score=26.03 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=41.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHhhhhhcCCcccccChHHHHHHHHHHHHHhhhhceeCCee
Q 028709 95 MFVGILCDIFNIIMYASPLTIWHKVITTKSVEYMPFFLSLANFANGCIWTAYALIKLDIY 154 (205)
Q Consensus 95 ~~lG~~~~v~si~~~~SPL~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG~l~~D~f 154 (205)
+.+|+.....++.. -+||+-+|...||+++++..-..--.+.-..-+.|.+..+=.|
T Consensus 32 klLg~~~va~sl~v---KlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF 88 (230)
T KOG3211|consen 32 KLLGLSTVAGSLLV---KLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF 88 (230)
T ss_pred hhhhHHHHHHHHHh---hhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc
Confidence 34555555555544 4899999999999999998877777777777777877665333
No 38
>PHA03049 IMV membrane protein; Provisional
Probab=23.76 E-value=51 Score=23.03 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhheEEEeCCCCC
Q 028709 161 LGAILGFIQLVIYACYYKSTPK 182 (205)
Q Consensus 161 ~G~~l~~~ql~l~~~y~~~~~~ 182 (205)
++++..++-+++|.+|++++..
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 4566777888999999887543
No 39
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=21.00 E-value=4.3e+02 Score=25.38 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHhhheEEEeCCC
Q 028709 158 SNGLGAILGFIQLVIYACYYKST 180 (205)
Q Consensus 158 pN~~G~~l~~~ql~l~~~y~~~~ 180 (205)
|.-+..++.+..+++...+=++.
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHHHHHHHHHHHHHhheeec
Confidence 34556666666655554444443
No 40
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=20.83 E-value=4.5e+02 Score=21.80 Aligned_cols=40 Identities=0% Similarity=-0.190 Sum_probs=16.5
Q ss_pred hHHHHhhhhhcCCcc-cccChHHHHHHHHHHHHHhhhhcee
Q 028709 111 SPLTIWHKVITTKSV-EYMPFFLSLANFANGCIWTAYALIK 150 (205)
Q Consensus 111 SPL~~i~~VirtKst-~~l~~~~~~~~~~n~~lW~~YG~l~ 150 (205)
+...-+.+..++++- ..+..............-.+-|.+.
T Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 105 ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 333444555555322 2233333333333334444445555
No 41
>PRK10746 putative transport protein YifK; Provisional
Probab=20.72 E-value=3.6e+02 Score=24.95 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=39.9
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcc--ccc-------ChHHHHHHHHHHHHHhhhhceeCCeeEEechhHHH
Q 028709 93 RSMFVGILCDIFNIIMYASPLTIWHKVITTKSV--EYM-------PFFLSLANFANGCIWTAYALIKLDIYILVSNGLGA 163 (205)
Q Consensus 93 ~~~~lG~~~~v~si~~~~SPL~~i~~VirtKst--~~l-------~~~~~~~~~~n~~lW~~YG~l~~D~fI~~pN~~G~ 163 (205)
.-+.+-.+++...+..+..+.....+-.|++.. ++. |.....+...+....... ...+|.. .....|.
T Consensus 359 ~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 435 (461)
T PRK10746 359 VFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGM-YFNEDTR--MSLFVGI 435 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHH-HHCccHH--HHHHHHH
Confidence 344455566666667777776544443333221 121 233333333333332222 1222211 2455555
Q ss_pred HHHHHHhhheEEEeCCCCCC
Q 028709 164 ILGFIQLVIYACYYKSTPKK 183 (205)
Q Consensus 164 ~l~~~ql~l~~~y~~~~~~~ 183 (205)
..-...+..|..|...++.|
T Consensus 436 ~~~~~~~~~y~~~~~~~~~~ 455 (461)
T PRK10746 436 IFLLAVTLIYKVFGLNRHGK 455 (461)
T ss_pred HHHHHHHHHHHHHHhhhhcc
Confidence 55555566666665544444
No 42
>PRK10580 proY putative proline-specific permease; Provisional
Probab=20.67 E-value=3.6e+02 Score=24.69 Aligned_cols=30 Identities=7% Similarity=0.000 Sum_probs=17.8
Q ss_pred cchhhhhhHHHHHHHHHHHhHHHHhhhhhc
Q 028709 92 SRSMFVGILCDIFNIIMYASPLTIWHKVIT 121 (205)
Q Consensus 92 ~~~~~lG~~~~v~si~~~~SPL~~i~~Vir 121 (205)
+.-+.+.-+++...+..|..+.....+-.|
T Consensus 355 ~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~ 384 (457)
T PRK10580 355 NVFLVIASLATFATVWVWIMILLSQIAFRR 384 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666667777777655544443
Done!