Query 028709
Match_columns 205
No_of_seqs 190 out of 1111
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 02:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 22.6 2.6E+02 0.009 23.5 7.6 22 161-182 412-433 (445)
2 4gc0_A D-xylose-proton symport 13.5 1E+02 0.0035 26.1 2.7 19 171-189 458-476 (491)
3 4djk_A Probable glutamate/gamm 9.9 2.6E+02 0.0091 24.1 4.2 21 95-115 368-388 (511)
4 2b2h_A AMT-1, ammonium transpo 9.7 2.7E+02 0.0092 24.6 4.1 30 120-149 31-60 (399)
5 2nr1_A NR1 M2, M2; receptor, s 8.6 88 0.003 17.2 0.3 14 138-151 9-22 (27)
6 4h33_A LMO2059 protein; bilaye 7.2 6.8E+02 0.023 17.9 7.7 40 86-125 62-101 (137)
7 3bz1_X Photosystem II PSBX pro 6.6 2.2E+02 0.0075 17.8 1.5 23 122-144 4-26 (50)
8 3dad_A FH1/FH2 domain-containi 5.1 3.4E+02 0.012 23.5 2.3 31 112-142 255-285 (339)
9 2i68_A Protein EMRE; transmemb 4.8 8.6E+02 0.03 17.6 4.2 44 157-201 85-128 (137)
10 2gfp_A EMRD, multidrug resista 4.7 1.2E+03 0.042 18.2 5.6 7 24-30 37-43 (375)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=22.58 E-value=2.6e+02 Score=23.53 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhheEEEeCCCCC
Q 028709 161 LGAILGFIQLVIYACYYKSTPK 182 (205)
Q Consensus 161 ~G~~l~~~ql~l~~~y~~~~~~ 182 (205)
.|...-..-+.+|+.+++++++
T Consensus 412 ~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 412 WSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHhhhccc
Confidence 3444445555566666555443
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=13.51 E-value=1e+02 Score=26.08 Aligned_cols=19 Identities=5% Similarity=0.027 Sum_probs=9.8
Q ss_pred hheEEEeCCCCCCCCCCCC
Q 028709 171 VIYACYYKSTPKKGNDDDF 189 (205)
Q Consensus 171 ~l~~~y~~~~~~~~~~~~~ 189 (205)
..++..|..|.+..||-|.
T Consensus 458 ~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 458 FMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHCCCCTTCCHHHHGG
T ss_pred HHHheecCCCCCCHHHHHH
Confidence 3445556556665554443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=9.89 E-value=2.6e+02 Score=24.08 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHH
Q 028709 95 MFVGILCDIFNIIMYASPLTI 115 (205)
Q Consensus 95 ~~lG~~~~v~si~~~~SPL~~ 115 (205)
+.+--+++......|..+...
T Consensus 368 ~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 368 LIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555443
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=9.66 E-value=2.7e+02 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=22.4
Q ss_pred hcCCcccccChHHHHHHHHHHHHHhhhhce
Q 028709 120 ITTKSVEYMPFFLSLANFANGCIWTAYALI 149 (205)
Q Consensus 120 irtKst~~l~~~~~~~~~~n~~lW~~YG~l 149 (205)
.|+||+-++=.--.....+.+.+|.++|+-
T Consensus 31 vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~ 60 (399)
T 2b2h_A 31 VRRKNAVNMIALSFISLIITVLLWIFYGYS 60 (399)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777766666667778888999988764
No 5
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=8.57 E-value=88 Score=17.16 Aligned_cols=14 Identities=7% Similarity=0.484 Sum_probs=9.9
Q ss_pred HHHHHHhhhhceeC
Q 028709 138 ANGCIWTAYALIKL 151 (205)
Q Consensus 138 ~n~~lW~~YG~l~~ 151 (205)
+.+.+|+..|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 45678988887653
No 6
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=7.21 E-value=6.8e+02 Score=17.92 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=28.9
Q ss_pred hccccccchhhhhhHHHHHHHHHHHhHHHHhhhhhcCCcc
Q 028709 86 AFHTHTSRSMFVGILCDIFNIIMYASPLTIWHKVITTKSV 125 (205)
Q Consensus 86 ~~~~~~~~~~~lG~~~~v~si~~~~SPL~~i~~VirtKst 125 (205)
...+......++..+..+.++.+++.+...+...+++++.
T Consensus 62 Di~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 101 (137)
T 4h33_A 62 DIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKP 101 (137)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTT
T ss_pred CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455567888888888888888888888777765543
No 7
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=6.58 E-value=2.2e+02 Score=17.82 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=12.3
Q ss_pred CCcccccChHHHHHHHHHHHHHh
Q 028709 122 TKSVEYMPFFLSLANFANGCIWT 144 (205)
Q Consensus 122 tKst~~l~~~~~~~~~~n~~lW~ 144 (205)
..+..-+...|++.+++.++.|-
T Consensus 4 ~~~~~l~~mTpSL~NFl~SlvaG 26 (50)
T 3bz1_X 4 SASSLLLTITPSLKGFFIGLLSG 26 (50)
T ss_dssp -------CCCHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCHHHHHHHHHHHHH
Confidence 33333444567888999888873
No 8
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=5.05 E-value=3.4e+02 Score=23.51 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHhhhhhcCCcccccChHHHHHHHHHHHH
Q 028709 112 PLTIWHKVITTKSVEYMPFFLSLANFANGCI 142 (205)
Q Consensus 112 PL~~i~~VirtKst~~l~~~~~~~~~~n~~l 142 (205)
|+..+-+++++|+.++.......++++|+.+
T Consensus 255 p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 255 PWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp TTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 5788888999999999999999999999864
No 9
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=4.78 E-value=8.6e+02 Score=17.64 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=8.5
Q ss_pred echhHHHHHHHHHhhheEEEeCCCCCCCCCCCCCCCCCCcccccc
Q 028709 157 VSNGLGAILGFIQLVIYACYYKSTPKKGNDDDFVKPKPTEVQHSG 201 (205)
Q Consensus 157 ~pN~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (205)
....+|..+-+.-+.+.-..++ +.+..++++.++..-+|||+..
T Consensus 85 ~~~~~Gi~LIi~GV~ll~~~~~-~~~~~~~~~v~~~~~~~~~~~~ 128 (137)
T 2i68_A 85 LPAIIGMMLICAGVLIINLLSR-STPHEFEAYVEQKLISEEDLNS 128 (137)
T ss_dssp --CHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-CCCCCcccchhhhhcCHHHhhh
Confidence 4456666555544443322222 1222334445555555666543
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=4.71 E-value=1.2e+03 Score=18.21 Aligned_cols=7 Identities=14% Similarity=0.059 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 028709 24 VGLALEL 30 (205)
Q Consensus 24 ~G~~~~~ 30 (205)
.|.+...
T Consensus 37 ~g~~~~~ 43 (375)
T 2gfp_A 37 VQSVMGA 43 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3443333
Done!