Query 028709
Match_columns 205
No_of_seqs 190 out of 1111
Neff 6.4
Searched_HMMs 13730
Date Tue Mar 26 02:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028709.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028709hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 17.4 44 0.0032 17.1 2.2 18 21-38 7-24 (30)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 7.7 33 0.0024 22.1 -0.5 9 172-180 39-47 (91)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 6.9 4.3E+02 0.031 19.2 9.8 10 23-32 60-69 (447)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 6.8 1.2E+02 0.0088 16.2 1.7 13 21-33 3-15 (36)
5 d1jfia_ a.22.1.3 (A:) Negative 6.0 2.7E+02 0.02 16.0 3.5 18 112-129 4-22 (66)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 5.0 2.4E+02 0.018 14.2 2.4 12 25-36 4-15 (32)
7 d2croa_ a.35.1.2 (A:) cro 434 4.7 2.3E+02 0.017 15.9 2.4 34 114-147 31-64 (65)
8 d2fc6a1 g.66.1.1 (A:8-44) Targ 4.2 1.1E+02 0.0077 16.6 0.4 12 40-51 19-30 (37)
9 d3cx5c1 f.32.1.1 (C:262-385) M 3.7 5.7E+02 0.041 16.6 4.8 36 80-115 73-110 (124)
10 d1vf5c3 f.23.23.1 (C:250-286) 3.2 4.1E+02 0.03 14.1 3.0 17 113-129 18-34 (37)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.44 E-value=44 Score=17.07 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=14.4
Q ss_pred ehhHHHHHHHHHHHHHHh
Q 028709 21 INAVGLALELIYLSIFCF 38 (205)
Q Consensus 21 vN~~G~~~~~~Y~~if~~ 38 (205)
+-.+.++++++|..+|++
T Consensus 7 v~ifac~i~lfffaiffr 24 (30)
T d2axtt1 7 VFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356788888999888887
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.75 E-value=33 Score=22.13 Aligned_cols=9 Identities=22% Similarity=0.028 Sum_probs=4.0
Q ss_pred heEEEeCCC
Q 028709 172 IYACYYKST 180 (205)
Q Consensus 172 l~~~y~~~~ 180 (205)
..++|++++
T Consensus 39 ~~~ryR~~~ 47 (91)
T d1fftb2 39 FAWKYRASN 47 (91)
T ss_dssp TTTTTTTST
T ss_pred hheeeeccC
Confidence 334555443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.94 E-value=4.3e+02 Score=19.21 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 028709 23 AVGLALELIY 32 (205)
Q Consensus 23 ~~G~~~~~~Y 32 (205)
-.|.+.++.+
T Consensus 60 ~~g~~~s~~~ 69 (447)
T d1pw4a_ 60 DLGFALSGIS 69 (447)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.78 E-value=1.2e+02 Score=16.22 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=6.0
Q ss_pred ehhHHHHHHHHHH
Q 028709 21 INAVGLALELIYL 33 (205)
Q Consensus 21 vN~~G~~~~~~Y~ 33 (205)
+|..|.+....|+
T Consensus 3 vN~Lg~iAt~LFi 15 (36)
T d2axtm1 3 VNQLGLIATALFV 15 (36)
T ss_dssp CCTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 3455555444433
No 5
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.97 E-value=2.7e+02 Score=15.97 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=12.2
Q ss_pred HHHHhhhhhcC-CcccccC
Q 028709 112 PLTIWHKVITT-KSVEYMP 129 (205)
Q Consensus 112 PL~~i~~Virt-Kst~~l~ 129 (205)
|+..+++++|. .+...++
T Consensus 4 P~srVkkimk~~~~~~~is 22 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVA 22 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBC
T ss_pred ChHHHHHHHhcCCcccccc
Confidence 88889999994 3443443
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.98 E-value=2.4e+02 Score=14.16 Aligned_cols=12 Identities=17% Similarity=0.819 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 028709 25 GLALELIYLSIF 36 (205)
Q Consensus 25 G~~~~~~Y~~if 36 (205)
|.++.++|+..|
T Consensus 4 gavfyivfialf 15 (32)
T d2e74e1 4 GAVFYIVFIALF 15 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeHHHHHHHHH
Confidence 444444444443
No 7
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=4.66 E-value=2.3e+02 Score=15.93 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=16.7
Q ss_pred HHhhhhhcCCcccccChHHHHHHHHHHHHHhhhh
Q 028709 114 TIWHKVITTKSVEYMPFFLSLANFANGCIWTAYA 147 (205)
Q Consensus 114 ~~i~~VirtKst~~l~~~~~~~~~~n~~lW~~YG 147 (205)
.++.+..+.++..+-.+.-..-.+-.+.-|+++|
T Consensus 31 ~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 31 QSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred hHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
Confidence 3344555555433323333333334567788877
No 8
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25 E-value=1.1e+02 Score=16.57 Aligned_cols=12 Identities=0% Similarity=-0.144 Sum_probs=8.2
Q ss_pred ccccccccccch
Q 028709 40 NICFYFARRTCH 51 (205)
Q Consensus 40 ~~~~~ya~~k~~ 51 (205)
+++|+|++...+
T Consensus 19 FsAyGWCP~G~q 30 (37)
T d2fc6a1 19 FSAYGWCPLGPQ 30 (37)
T ss_dssp HHHTCCCTTGGG
T ss_pred hhhccccCCCCC
Confidence 567888876543
No 9
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.66 E-value=5.7e+02 Score=16.61 Aligned_cols=36 Identities=6% Similarity=0.172 Sum_probs=25.2
Q ss_pred hhhhhhhccccccchhhhhhHHHHHHHHHHHh--HHHH
Q 028709 80 AIITFLAFHTHTSRSMFVGILCDIFNIIMYAS--PLTI 115 (205)
Q Consensus 80 ~~~~~~~~~~~~~~~~~lG~~~~v~si~~~~S--PL~~ 115 (205)
.+.+..|.+..|..-..+|.++++.-.+.|.- |+-+
T Consensus 73 i~LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli~~Pl~s 110 (124)
T d3cx5c1 73 VLLGQIGACHVEVPYVLMGQIATFIYFAYFLIIVPVIS 110 (124)
T ss_dssp HHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566676667777888999999887777643 4443
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.20 E-value=4.1e+02 Score=14.07 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=10.8
Q ss_pred HHHhhhhhcCCcccccC
Q 028709 113 LTIWHKVITTKSVEYMP 129 (205)
Q Consensus 113 L~~i~~VirtKst~~l~ 129 (205)
+.++--|+|+|-.|-+.
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666677777766543
Done!