Query 028711
Match_columns 205
No_of_seqs 154 out of 199
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 15:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 7.1E-50 1.5E-54 363.0 9.6 134 55-188 43-185 (355)
2 PF01167 Tub: Tub family; Int 99.9 1.5E-22 3.2E-27 175.4 2.3 68 121-188 1-76 (246)
3 PF12937 F-box-like: F-box-lik 98.3 2.4E-07 5.3E-12 60.6 1.1 36 57-100 1-36 (47)
4 PLN03215 ascorbic acid mannose 98.1 3.5E-06 7.5E-11 78.4 4.8 41 55-102 2-42 (373)
5 PF00646 F-box: F-box domain; 97.9 1.3E-06 2.8E-11 56.6 -0.9 39 56-102 2-40 (48)
6 smart00256 FBOX A Receptor for 97.8 3.8E-06 8.2E-11 51.8 0.1 34 60-101 1-34 (41)
7 KOG2997 F-box protein FBX9 [Ge 97.0 0.00065 1.4E-08 63.5 4.0 98 54-160 101-237 (366)
8 KOG2120 SCF ubiquitin ligase, 89.6 0.092 2E-06 49.8 -0.3 63 56-126 97-161 (419)
9 KOG0274 Cdc4 and related F-box 51.9 3.5 7.6E-05 40.3 -0.9 42 53-102 104-145 (537)
10 PF10504 DUF2452: Protein of u 42.6 28 0.0006 29.9 3.1 17 128-145 84-100 (159)
11 KOG4341 F-box protein containi 40.8 10 0.00022 37.4 0.3 51 59-118 74-124 (483)
12 PF09372 PRANC: PRANC domain; 32.0 24 0.00052 26.2 1.0 21 54-74 69-89 (97)
13 PHA02875 ankyrin repeat protei 28.4 42 0.00091 29.9 2.1 22 53-74 383-404 (413)
14 PF13013 F-box-like_2: F-box-l 23.5 32 0.00069 27.4 0.4 48 56-111 21-71 (109)
15 PHA03100 ankyrin repeat protei 22.0 49 0.0011 29.8 1.4 22 53-74 444-465 (480)
16 cd03074 PDI_b'_Calsequestrin_C 21.4 50 0.0011 27.3 1.1 29 167-195 53-86 (120)
17 PF06290 PsiB: Plasmid SOS inh 20.7 1.7E+02 0.0037 24.9 4.2 30 126-158 60-89 (143)
18 PF04367 DUF502: Protein of un 20.6 3.4E+02 0.0074 20.8 5.6 70 63-150 25-104 (108)
19 PRK13701 psiB plasmid SOS inhi 20.4 1.4E+02 0.003 25.4 3.6 29 127-158 61-89 (144)
20 PRK13890 conjugal transfer pro 20.2 1E+02 0.0023 24.2 2.7 35 57-104 84-118 (120)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=7.1e-50 Score=363.02 Aligned_cols=134 Identities=50% Similarity=0.835 Sum_probs=131.1
Q ss_pred CCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhhcCCCCCCcccccccccCCCCCCCCeeeEEEe
Q 028711 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR 134 (205)
Q Consensus 55 ~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv~~pe~~gk~tFP~sLkqPgPR~~~iQCfIkR 134 (205)
+.|++||||+|+|||+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||||+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeecCCCCCC--CCCeEEEeccccCCCCee--EEeeCCCCc----cccceeec-c
Q 028711 135 NKKTSTFYLYLALTPSFS--EKGKFLLAARRYRRGAHI--LISLGQTLQ----FTTVGRLT-M 188 (205)
Q Consensus 135 dK~~~tY~LyL~Ls~~~~--d~GKFLLAARKrRrstts--lISlD~~Dl----~~yIGKLR-n 188 (205)
||+|++||||+++.+++. |+|||||||||+||+||+ |||+|++|| ++|||||| |
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN 185 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSN 185 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecc
Confidence 999999999999999754 789999999999999999 999999999 99999999 7
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=99.85 E-value=1.5e-22 Score=175.44 Aligned_cols=68 Identities=44% Similarity=0.597 Sum_probs=52.3
Q ss_pred CCCCCCCeeeEEEecCCCceEEEeecCCCCC-CCCCeEEEeccccCCCCee--EEeeCCCCc----cccceeec-c
Q 028711 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHI--LISLGQTLQ----FTTVGRLT-M 188 (205)
Q Consensus 121 PgPR~~~iQCfIkRdK~~~tY~LyL~Ls~~~-~d~GKFLLAARKrRrstts--lISlD~~Dl----~~yIGKLR-n 188 (205)
|||+|++|||||+|||+|++|+||++++..+ .++|+|||||||+++++|+ |||+|++|| ++|||||| |
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsN 76 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSN 76 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeeccc
Confidence 8999999999999999998655554444332 4899999999999999988 999999999 89999999 7
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.28 E-value=2.4e-07 Score=60.60 Aligned_cols=36 Identities=31% Similarity=0.635 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHH
Q 028711 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (205)
Q Consensus 57 Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~ 100 (205)
|..||+|+|.+|+..++ . +|+..|+.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~-------~-~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-------P-RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--------H-HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCC-------H-HHHHHHHHHHHHHHHHHC
Confidence 78999999999999993 3 379999999999999984
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.10 E-value=3.5e-06 Score=78.36 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHh
Q 028711 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (205)
Q Consensus 55 ~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~ei 102 (205)
..|+.||+|||+.|..|| |++-|++..++||++||..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 469999999999999999 99999999999999999987643
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.93 E-value=1.3e-06 Score=56.56 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHh
Q 028711 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (205)
Q Consensus 56 ~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~ei 102 (205)
.|.+||+|++.+|+.+++. +++++|+.||++|+.++.+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence 4789999999999999944 46999999999999998654
No 6
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.84 E-value=3.8e-06 Score=51.81 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=30.5
Q ss_pred CCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHH
Q 028711 60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (205)
Q Consensus 60 lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~e 101 (205)
||+|++.+|+.++ +. +++.+|+.||++|+.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 55 7899999999999998853
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.02 E-value=0.00065 Score=63.46 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=63.0
Q ss_pred CCCCCC---CCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhh-------cCCCC-CCcccc--------
Q 028711 54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-------KSPFL-SGKITF-------- 114 (205)
Q Consensus 54 ~~~Wa~---lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv-------~~pe~-~gk~tF-------- 114 (205)
|++|-+ ||+|+|-.||+++-.+- =.-++.+.||+|||.|+-.+.+=. +.=+. ++++..
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~ 177 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY 177 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 677866 99999999999984321 123567899999999877663210 00001 122221
Q ss_pred ----cccccCCCCCCCCeeeEEEec---CCCc-------------eEEEeecCCCCCCCCCeEEEe
Q 028711 115 ----PSCLKQPGPREFPHQCLIRRN---KKTS-------------TFYLYLALTPSFSEKGKFLLA 160 (205)
Q Consensus 115 ----P~sLkqPgPR~~~iQCfIkRd---K~~~-------------tY~LyL~Ls~~~~d~GKFLLA 160 (205)
-+.|++ ||--.--|+|.++ +.|. |||-|+- +-++|+||+-
T Consensus 178 ~SWR~Mfl~R--pRvrFdG~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiR----FyP~G~~l~~ 237 (366)
T KOG2997|consen 178 TSWREMFLER--PRVRFDGVYISKTTYIRQGENSLDSFYRPVHLVEYYRYIR----FYPDGHVLML 237 (366)
T ss_pred hHHHHHHhhC--cceeecceEEEEEeEeecCchhhhhhcCcceeeEEEEEEE----ecCCCcEEEE
Confidence 234667 6666667898887 3332 8999987 4678888863
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=0.092 Score=49.84 Aligned_cols=63 Identities=25% Similarity=0.426 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhh--cCCCCCCcccccccccCCCCCCC
Q 028711 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV--KSPFLSGKITFPSCLKQPGPREF 126 (205)
Q Consensus 56 ~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv--~~pe~~gk~tFP~sLkqPgPR~~ 126 (205)
.|.+||.|+|.+|+.-+ ..++....++||++|..++.+-- ......||.--|.+|-+=--|+.
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV 161 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGV 161 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCe
Confidence 39999999999999877 56789999999999999886532 33445566666666655444443
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=51.90 E-value=3.5 Score=40.28 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=35.0
Q ss_pred CCCCCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHh
Q 028711 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (205)
Q Consensus 53 ~~~~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~ei 102 (205)
+..-=..||.||.--|+..+ +. ++...|++||+.|+.++..-
T Consensus 104 ~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred ccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhcc
Confidence 55556779999999999999 55 67999999999999987543
No 10
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=42.61 E-value=28 Score=29.86 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=11.8
Q ss_pred eeeEEEecCCCceEEEee
Q 028711 128 HQCLIRRNKKTSTFYLYL 145 (205)
Q Consensus 128 iQCfIkRdK~~~tY~LyL 145 (205)
.+|-.+. .-|.+||||-
T Consensus 84 A~cnF~p-ipG~iYhLY~ 100 (159)
T PF10504_consen 84 AKCNFEP-IPGQIYHLYR 100 (159)
T ss_pred cccCcee-cCCCEEEEEE
Confidence 4455554 6678999995
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=40.84 E-value=10 Score=37.37 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhhcCCCCCCcccccccc
Q 028711 59 GLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118 (205)
Q Consensus 59 ~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv~~pe~~gk~tFP~sL 118 (205)
.|||||+..|+.-| ++| ..--||.+|+.|--.+.+...=. .=.-.|||.-+
T Consensus 74 ~LPpEl~lkvFS~L----Dtk----sl~r~a~~c~~~n~~AlD~~~~q-~idL~t~~rDv 124 (483)
T KOG4341|consen 74 SLPPELLLKVFSML----DTK----SLCRAAQCCTMWNKLALDGSCWQ-HIDLFTFQRDV 124 (483)
T ss_pred cCCHHHHHHHHHHH----hHH----HHHHHHHHHHHhhhhhhccccce-eeehhcchhcC
Confidence 59999999999999 333 45569999999999888775321 12235665444
No 12
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=32.01 E-value=24 Score=26.23 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHHHHHhhhcc
Q 028711 54 SGSWAGLLPELLGEIIRRVET 74 (205)
Q Consensus 54 ~~~Wa~lppELL~dii~rve~ 74 (205)
++.|..||.|+-..|+..|..
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~ 89 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSN 89 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCH
Confidence 478999999999999998843
No 13
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.35 E-value=42 Score=29.87 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCCCCCCCCHHHHHHHHhhhcc
Q 028711 53 SSGSWAGLLPELLGEIIRRVET 74 (205)
Q Consensus 53 ~~~~Wa~lppELL~dii~rve~ 74 (205)
.++.|..||+|+-..|+..|..
T Consensus 383 ~~~~w~~LP~Eik~~Il~~l~~ 404 (413)
T PHA02875 383 DESKWNILPHEIKYLILEKIGN 404 (413)
T ss_pred cccchhcCcHHHHHHHHHHhcc
Confidence 3678999999999999999844
No 14
>PF13013 F-box-like_2: F-box-like domain
Probab=23.46 E-value=32 Score=27.41 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccc---hHHHHHHHhhcCCCCCCc
Q 028711 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCK---RWREITKDIVKSPFLSGK 111 (205)
Q Consensus 56 ~Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr---~WR~~~~eiv~~pe~~gk 111 (205)
+=-+||.|||..|+..-... +..+.-..|+ .||......+..|++|-.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~--------~l~~l~~~~~~~r~~r~~~~~~L~~p~~c~~ 71 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDP--------ILLALSRTCRAYRSWRDHIWYLLPKPQSCTR 71 (109)
T ss_pred chhhChHHHHHHHHhhcCcH--------HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 35679999999999987332 2233333444 566665556666666653
No 15
>PHA03100 ankyrin repeat protein; Provisional
Probab=21.96 E-value=49 Score=29.85 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.0
Q ss_pred CCCCCCCCCHHHHHHHHhhhcc
Q 028711 53 SSGSWAGLLPELLGEIIRRVET 74 (205)
Q Consensus 53 ~~~~Wa~lppELL~dii~rve~ 74 (205)
.++.|..||+|+...|+..|..
T Consensus 444 ~~~~w~~lP~Eik~~Il~~l~~ 465 (480)
T PHA03100 444 KNTYWNILPIEIKYKILEYLSN 465 (480)
T ss_pred cCCchhhCcHHHHHHHHHhCCH
Confidence 3568999999999999999843
No 16
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=21.35 E-value=50 Score=27.28 Aligned_cols=29 Identities=10% Similarity=-0.059 Sum_probs=21.1
Q ss_pred CCeeEEeeCCCCc---cccceeec--cccCCCCC
Q 028711 167 GAHILISLGQTLQ---FTTVGRLT--MVQNPQAA 195 (205)
Q Consensus 167 sttslISlD~~Dl---~~yIGKLR--n~~np~~~ 195 (205)
.+.+||=+||||+ -.|--|-- +..+||-|
T Consensus 53 p~LsiIWIDPD~FPllv~yWektF~IDl~~PqIG 86 (120)
T cd03074 53 PDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIG 86 (120)
T ss_pred CCceEEEECCccCchhhHHHHhhcCcccCCCcee
Confidence 3444999999998 55555554 66788876
No 17
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=20.73 E-value=1.7e+02 Score=24.91 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=19.5
Q ss_pred CCeeeEEEecCCCceEEEeecCCCCCCCCCeEE
Q 028711 126 FPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFL 158 (205)
Q Consensus 126 ~~iQCfIkRdK~~~tY~LyL~Ls~~~~d~GKFL 158 (205)
.||||+|+=.+ -.|+|+++ +++....+++|
T Consensus 60 fPVq~Rftp~~--~~~~l~vC-SpG~~sp~W~~ 89 (143)
T PF06290_consen 60 FPVQCRFTPSH--ERFHLAVC-SPGEVSPYWML 89 (143)
T ss_dssp SSSEEEEEETT---SEEEEEE--SSSS-SSEEE
T ss_pred eeEEEEecCCC--CcEEEEEc-CCCCcCcceEE
Confidence 37999999876 67899986 55434455654
No 18
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=20.60 E-value=3.4e+02 Score=20.78 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=46.1
Q ss_pred HHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhhcCCCCCCcccc--cccccCCCCCCCCeeeEEEecCCC--
Q 028711 63 ELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITF--PSCLKQPGPREFPHQCLIRRNKKT-- 138 (205)
Q Consensus 63 ELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv~~pe~~gk~tF--P~sLkqPgPR~~~iQCfIkRdK~~-- 138 (205)
..+..++.|+ |--+ ++....|+++..-.-.++-.| |+.+.-|++ |.-.-.|++++...
T Consensus 25 ~~~e~ll~ri-------P~v~----------~iY~~~k~~~~~~~~~~~~~f~~vVlV~~p~~-g~~~igFvT~~~~~~~ 86 (108)
T PF04367_consen 25 NWLERLLQRI-------PLVK----------SIYSSIKQLVESFSGDKKKSFKKVVLVEFPRP-GMYVIGFVTGEDPGEL 86 (108)
T ss_pred HHHHHHHHHC-------CchH----------HHHHHHHHHHHHHhhcccccCCeEEEEEecCC-CcEEEEEEeccCcchh
Confidence 3556677777 7654 566666777655433333335 888888766 66788999998665
Q ss_pred ------ceEEEeecCCCC
Q 028711 139 ------STFYLYLALTPS 150 (205)
Q Consensus 139 ------~tY~LyL~Ls~~ 150 (205)
-.+.+|+-.++.
T Consensus 87 ~~~~~~~~v~VfvPtsPn 104 (108)
T PF04367_consen 87 PGKTGEEMVAVFVPTSPN 104 (108)
T ss_pred hccCCCCEEEEEeCCCCC
Confidence 367888876654
No 19
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=20.38 E-value=1.4e+02 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=19.5
Q ss_pred CeeeEEEecCCCceEEEeecCCCCCCCCCeEE
Q 028711 127 PHQCLIRRNKKTSTFYLYLALTPSFSEKGKFL 158 (205)
Q Consensus 127 ~iQCfIkRdK~~~tY~LyL~Ls~~~~d~GKFL 158 (205)
||||+|+= .--.|+|+|+ +++....++++
T Consensus 61 PVq~Rfsp--~~~~~~l~vC-SpG~~sP~W~~ 89 (144)
T PRK13701 61 PVQVRFTP--AHERFHLALC-SPGDVSPVWVL 89 (144)
T ss_pred eEEEEecC--CCCCeEEEEe-CCCCCCcceEE
Confidence 79999987 3347899987 44433455644
No 20
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=20.19 E-value=1e+02 Score=24.18 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHhhhcccCCCCCCccceeeeccccchHHHHHHHhhc
Q 028711 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVK 104 (205)
Q Consensus 57 Wa~lppELL~dii~rve~se~~wP~rk~vVacA~VCr~WR~~~~eiv~ 104 (205)
...+||.+.+ ++.++ |.. .|.|+|.|-+-++.+++
T Consensus 84 ~~~~~~~~~~-lld~L-------~~~-----PA~v~~~~~~~~~~~~~ 118 (120)
T PRK13890 84 PRSLPPGFER-VAAVL-------PEH-----QAFIVKKWGEATRKKLR 118 (120)
T ss_pred CCCCChHHHH-HHHHc-------CCc-----cHHHHHHHHHHHHHHHc
Confidence 4578998665 88888 443 36799999998887765
Done!