BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028712
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
          Length = 219

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 138/212 (65%), Gaps = 12/212 (5%)

Query: 2   SENAGGCCRCCCSFIFTLGLTSLFMWLSLRTSNPKCSIEGFYLPALDKSSNNRNNTTLQF 61
           +E    CC CC SFIFT GLTSLF+WLSLR   PKCSI+ F++PAL K  N+R+NTTL F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 62  QLKLENTNKDKGVYYDDVNVTVYDFPNRSHI-------IGTSVIGRFYQGHKKTAHKNGT 114
            ++ +N NKDKG+YYDDV++  +   N + I       +G   + +FYQGHKK A K G 
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLN-FSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQ 126

Query: 115 A-PTDQKVVSRAVFANGSAVFRVDLVTAVRFKIIAWKTKRHKIAVGADVEVNVNGTKVNK 173
             P + + V RAV  NGSAVFR+DL T VRFKI+ WKTKR+ + VGADVEVN +G K  K
Sbjct: 127 VKPLNNQTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDGVKAQK 186

Query: 174 KNIKLSSSGSN---NVSYYCCCVGILLYFFVL 202
           K IK+  S S+     S+    +  LL FF +
Sbjct: 187 KGIKMKKSDSSFPLRSSFPISVLMNLLVFFAI 218


>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
          Length = 416

 Score = 36.6 bits (83), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 30  LRTSNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNR 89
           +R+++ K  +    L   D  SNN    +L   L + N+    G++YD    TVY    R
Sbjct: 2   VRSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQR 61

Query: 90  SHIIGTSVIGRFYQGHKKT----AHKNGTAPTDQKVVSRAVFANG--SAVFRVDLVTAVR 143
              +G   +  FY G K T    A   G      K   R  F +   + V+R+D+  ++ 
Sbjct: 62  ---LGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSIN 118

Query: 144 FKI-----IAWKTK 152
           F++     + W  K
Sbjct: 119 FRVMVLHLVTWPMK 132


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,451,464
Number of Sequences: 539616
Number of extensions: 3028346
Number of successful extensions: 7322
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7318
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)