Query 028712
Match_columns 205
No_of_seqs 119 out of 746
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 15:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.6E-33 3.5E-38 233.9 23.7 159 17-180 49-217 (219)
2 PF03168 LEA_2: Late embryogen 99.4 1.8E-12 4E-17 93.8 9.0 94 62-160 1-99 (101)
3 smart00769 WHy Water Stress an 98.4 4E-06 8.6E-11 61.3 10.3 67 48-118 6-73 (100)
4 PF07092 DUF1356: Protein of u 97.3 0.0062 1.3E-07 51.2 12.7 106 5-115 72-179 (238)
5 COG5608 LEA14-like dessication 96.2 0.43 9.4E-06 37.6 14.1 84 30-122 27-112 (161)
6 PF12751 Vac7: Vacuolar segreg 93.8 0.13 2.8E-06 46.1 5.5 31 55-86 346-376 (387)
7 TIGR02588 conserved hypothetic 62.9 13 0.00029 28.1 4.0 50 14-70 11-62 (122)
8 PF12505 DUF3712: Protein of u 49.4 1.1E+02 0.0023 22.7 7.6 63 92-156 2-69 (125)
9 PF14155 DUF4307: Domain of un 48.9 1.1E+02 0.0023 22.6 9.3 91 16-122 12-105 (112)
10 PF12505 DUF3712: Protein of u 48.3 44 0.00095 24.9 4.8 38 44-82 86-124 (125)
11 PRK10893 lipopolysaccharide ex 38.8 38 0.00083 27.5 3.4 38 13-50 8-56 (192)
12 PLN03160 uncharacterized prote 35.4 1.6E+02 0.0034 24.4 6.6 43 5-49 33-76 (219)
13 PF11906 DUF3426: Protein of u 35.2 2E+02 0.0043 21.7 8.1 58 38-98 49-106 (149)
14 PF11322 DUF3124: Protein of u 33.2 2.1E+02 0.0046 21.8 6.4 55 55-113 21-75 (125)
15 PRK06531 yajC preprotein trans 32.2 14 0.0003 27.7 -0.2 21 16-36 6-26 (113)
16 PF04478 Mid2: Mid2 like cell 30.8 38 0.00082 26.7 2.0 71 7-97 50-124 (154)
17 PF06692 MNSV_P7B: Melon necro 26.4 24 0.00052 23.0 0.2 9 29-37 31-39 (61)
18 PF08113 CoxIIa: Cytochrome c 24.3 17 0.00037 21.2 -0.7 16 13-28 9-24 (34)
19 PF15099 PIRT: Phosphoinositid 21.0 69 0.0015 24.5 1.8 35 5-39 45-82 (129)
20 PF11797 DUF3324: Protein of u 20.5 3.9E+02 0.0084 20.2 10.6 92 32-140 25-116 (140)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=233.93 Aligned_cols=159 Identities=15% Similarity=0.187 Sum_probs=137.6
Q ss_pred HHHHHheeeeeEEEecCCCEEEEEEEEEeeeecCCCC----CcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCcee
Q 028712 17 FTLGLTSLFMWLSLRTSNPKCSIEGFYLPALDKSSNN----RNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHI 92 (205)
Q Consensus 17 ~llgl~~lil~lvlrP~~P~f~V~~~~l~~f~~~~~s----~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~ 92 (205)
+++++++.++|++||||+|+|+|+++++++|++++.+ .+|++++++++++|||+ ++|+|++++++++|+ |+.
T Consensus 49 ~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~---g~~ 124 (219)
T PLN03160 49 ILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYG---GTV 124 (219)
T ss_pred HHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEEC---CEE
Confidence 3455666777889999999999999999999986532 35777888899999998 899999999999999 899
Q ss_pred EeeeeccceeecCCceEEEEEEEeeCCc------ccchhhhccceEEEEEEEEEEEEEEEEEEEEeeeEEEEEEEEEEcc
Q 028712 93 IGTSVIGRFYQGHKKTAHKNGTAPTDQK------VVSRAVFANGSAVFRVDLVTAVRFKIIAWKTKRHKIAVGADVEVNV 166 (205)
Q Consensus 93 lg~~~lp~f~Q~~~~t~~v~~~l~~~~~------~l~~~~~~~G~v~l~v~v~~rvr~kvg~~~s~~~~~~v~C~l~V~~ 166 (205)
+|++.+|+|+|++++++.+++++...+. .+..| ..+|.++|+++++.+.++++|++.+++++++++|++.|+.
T Consensus 125 vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~~~L~~D-~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~ 203 (219)
T PLN03160 125 VGEARTPPGKAKARRTMRMNVTVDIIPDKILSVPGLLTD-ISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNI 203 (219)
T ss_pred EEEEEcCCcccCCCCeEEEEEEEEEEeceeccchhHHHH-hhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEEC
Confidence 9999999999999999999888754322 33445 5899999999999999999999999999999999999999
Q ss_pred CCeeeeccceEeee
Q 028712 167 NGTKVNKKNIKLSS 180 (205)
Q Consensus 167 ~g~~~~~~~c~~~~ 180 (205)
.++.+++++|+...
T Consensus 204 ~~~~i~~~~C~~~~ 217 (219)
T PLN03160 204 TSQAIQGQKCKRHV 217 (219)
T ss_pred CCCEEeccEecccc
Confidence 99999999999763
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.40 E-value=1.8e-12 Score=93.76 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=69.7
Q ss_pred EEEEecCCCeeeEEEcceEEEEEEcCCCceeEe-eeeccceeecCCceEEEEEEEeeCCcccch---hhhccceEEEEEE
Q 028712 62 QLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIG-TSVIGRFYQGHKKTAHKNGTAPTDQKVVSR---AVFANGSAVFRVD 137 (205)
Q Consensus 62 ~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg-~~~lp~f~Q~~~~t~~v~~~l~~~~~~l~~---~~~~~G~v~l~v~ 137 (205)
+|+++|||. ++++|++++++++|+ |..+| ....|+|+|++++++.+.+.+..+...+.+ ++. +|..++++.
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~---g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~~~l~~~~-~~~~~~~v~ 75 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYN---GQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLPRLLKDLL-AGRVPFDVT 75 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEES---SSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHHHHHHHH-HTTSCEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEEC---CEEEECccccCCeEECCCCcEEEEEEEEEcHHHHHHHHHhhh-ccccceEEE
Confidence 588999998 999999999999999 89999 778899999999999998888777655443 224 556777778
Q ss_pred EEEEEEEEE-EEEEEeeeEEEEEE
Q 028712 138 LVTAVRFKI-IAWKTKRHKIAVGA 160 (205)
Q Consensus 138 v~~rvr~kv-g~~~s~~~~~~v~C 160 (205)
++++.++++ +.....+..+.++|
T Consensus 76 ~~~~g~~~v~~~~~~~~~~v~~~~ 99 (101)
T PF03168_consen 76 YRIRGTFKVLGTPIFGSVRVPVSC 99 (101)
T ss_dssp EEEEEEEE-EE-TTTSCEEEEEEE
T ss_pred EEEEEEEEEcccceeeeEEEeEEe
Confidence 888888884 43333344444444
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.41 E-value=4e-06 Score=61.26 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=58.1
Q ss_pred ecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeecc-ceeecCCceEEEEEEEeeC
Q 028712 48 DKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVIG-RFYQGHKKTAHKNGTAPTD 118 (205)
Q Consensus 48 ~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~lp-~f~Q~~~~t~~v~~~l~~~ 118 (205)
.....+..+.++.+++.++|||. ..+.|+.++..++|. |..+|++..+ +...++++++.+++++...
T Consensus 6 ~~~~~~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~---g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~ 73 (100)
T smart00769 6 EWGPVSGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLN---GVELGSGEIPDSGTLPGNGRTVLDVPVTVN 73 (100)
T ss_pred EeccccceEEEEEEEEEEECCCC-CccccccEEEEEEEC---CEEEEEEEcCCCcEECCCCcEEEEEEEEee
Confidence 33344456889999999999996 999999999999998 8999999986 8999999999998888763
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.35 E-value=0.0062 Score=51.20 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCceecchHHHHHHHHHheeeeeEEEecCCCEEEEEEEEEeeeecCCC-CCcceEEEEEEEEecCCCeeeEEEcceEEEE
Q 028712 5 AGGCCRCCCSFIFTLGLTSLFMWLSLRTSNPKCSIEGFYLPALDKSSN-NRNNTTLQFQLKLENTNKDKGVYYDDVNVTV 83 (205)
Q Consensus 5 ~~~Cc~~~~~~l~llgl~~lil~lvlrP~~P~f~V~~~~l~~f~~~~~-s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v 83 (205)
+|...=.+++.++-+.+..+++++ +-||...++-.++.......+.. +....++.-.|.++||| ...+.-.++.+++
T Consensus 72 rRTklyV~~sV~~CLl~~~L~iFF-LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv 149 (238)
T PF07092_consen 72 RRTKLYVFLSVLLCLLLSGLVIFF-LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTNLSIQV 149 (238)
T ss_pred ceeEEEeeHHHHHHHHHHHheEEE-EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEeEEEEE
Confidence 455555555554444444444443 23776665554444433333322 12455666678999999 5999999999999
Q ss_pred EEcCCCceeEeeeecc-ceeecCCceEEEEEEE
Q 028712 84 YDFPNRSHIIGTSVIG-RFYQGHKKTAHKNGTA 115 (205)
Q Consensus 84 ~Y~~~~g~~lg~~~lp-~f~Q~~~~t~~v~~~l 115 (205)
.|. ...+|.+... -...++++.+.+..++
T Consensus 150 ~~~---~~VVG~~~~~~~~~I~Prs~~q~~~tV 179 (238)
T PF07092_consen 150 LYM---KTVVGKGKNSNITVIGPRSSKQVNYTV 179 (238)
T ss_pred EEE---EeEEeeeEecceEEecccCCceEEEEe
Confidence 998 6789987665 3355566665555444
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.21 E-value=0.43 Score=37.56 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=63.5
Q ss_pred Eec-CCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeecc-ceeecCCc
Q 028712 30 LRT-SNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVIG-RFYQGHKK 107 (205)
Q Consensus 30 lrP-~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~lp-~f~Q~~~~ 107 (205)
..| ++|...--.+..-... +....+-.++.++|||. +.+--...+..++-. |..+|++..- ++..++++
T Consensus 27 ~i~~~~p~ve~~ka~wGkvt-----~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN---~Iki~eG~~~k~~~v~p~S 97 (161)
T COG5608 27 MIPVKKPGVESMKAKWGKVT-----NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMN---DIKIGEGEILKGTTVPPNS 97 (161)
T ss_pred ceEcCCCCceEEEEEEEEEe-----ccceEEEEEEEecCCCC-cceeeeceEEEEEEc---ceEeeccccccceEECCCC
Confidence 344 6777665555554433 23567888999999996 899999999999988 8999988654 68888999
Q ss_pred eEEEEEEEeeCCccc
Q 028712 108 TAHKNGTAPTDQKVV 122 (205)
Q Consensus 108 t~~v~~~l~~~~~~l 122 (205)
..++.+.+..+...+
T Consensus 98 ~~tvdv~l~~d~~~~ 112 (161)
T COG5608 98 RETVDVPLRLDNSKI 112 (161)
T ss_pred eEEEEEEEEEehHHH
Confidence 888988887765443
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=93.80 E-value=0.13 Score=46.09 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=27.3
Q ss_pred cceEEEEEEEEecCCCeeeEEEcceEEEEEEc
Q 028712 55 NNTTLQFQLKLENTNKDKGVYYDDVNVTVYDF 86 (205)
Q Consensus 55 l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~ 86 (205)
--.-+++++.+.|||- +.|.-++.++.+|-+
T Consensus 346 qELmfdl~V~A~NPn~-~~V~I~d~dldIFAK 376 (387)
T PF12751_consen 346 QELMFDLTVEAFNPNW-FTVTIDDMDLDIFAK 376 (387)
T ss_pred ceEEEeeEEEEECCCe-EEEEeccceeeeEec
Confidence 3567899999999995 999999999999976
No 7
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=62.91 E-value=13 Score=28.14 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHheeeeeE--EEecCCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCC
Q 028712 14 SFIFTLGLTSLFMWL--SLRTSNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNK 70 (205)
Q Consensus 14 ~~l~llgl~~lil~l--vlrP~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~ 70 (205)
+.+++++++.+++|. .-+++.|.+++......+- ...++-+-++++|--.
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCC
Confidence 345666777777755 4577899998877665432 1345677778888764
No 8
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=49.35 E-value=1.1e+02 Score=22.75 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=36.4
Q ss_pred eEeeeeccceee-cCCceEEEEEEEeeCCc-cc---chhhhccceEEEEEEEEEEEEEEEEEEEEeeeEE
Q 028712 92 IIGTSVIGRFYQ-GHKKTAHKNGTAPTDQK-VV---SRAVFANGSAVFRVDLVTAVRFKIIAWKTKRHKI 156 (205)
Q Consensus 92 ~lg~~~lp~f~Q-~~~~t~~v~~~l~~~~~-~l---~~~~~~~G~v~l~v~v~~rvr~kvg~~~s~~~~~ 156 (205)
++|...+|+..- +.......+..+...+. .+ ..++..+..+.+.++.+ .+.++|.++......
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~ 69 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPF 69 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEee
Confidence 578889998888 22223334455554432 22 23445555667766655 477888886554433
No 9
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=48.87 E-value=1.1e+02 Score=22.63 Aligned_cols=91 Identities=12% Similarity=0.258 Sum_probs=40.4
Q ss_pred HHHHHHheeeeeEEEe-cCCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEe
Q 028712 16 IFTLGLTSLFMWLSLR-TSNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIG 94 (205)
Q Consensus 16 l~llgl~~lil~lvlr-P~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg 94 (205)
++++.+++++.|+.++ ...|.++-+ ...|++.++ .+.+++++++-. |... ..-.+.-.+..+..+|
T Consensus 12 v~~vv~~~~~~w~~~~~~~~~~v~~~---~~gf~vv~d--~~v~v~f~Vtr~-~~~~-------a~C~VrA~~~d~aeVG 78 (112)
T PF14155_consen 12 VLVVVAGAVVAWFGYSQFGSPPVSAE---VIGFEVVDD--STVEVTFDVTRD-PGRP-------AVCIVRALDYDGAEVG 78 (112)
T ss_pred HHHHHHHHHHhHhhhhhccCCCceEE---EEEEEECCC--CEEEEEEEEEEC-CCCC-------EEEEEEEEeCCCCEEE
Confidence 3344445566677655 455555433 333444333 233444444433 5542 1212221111156777
Q ss_pred ee--eccceeecCCceEEEEEEEeeCCccc
Q 028712 95 TS--VIGRFYQGHKKTAHKNGTAPTDQKVV 122 (205)
Q Consensus 95 ~~--~lp~f~Q~~~~t~~v~~~l~~~~~~l 122 (205)
.. .+|| +...+..+...+...+.+.
T Consensus 79 rreV~vp~---~~~~~~~~~v~v~Tt~~av 105 (112)
T PF14155_consen 79 RREVLVPP---SGERTVRVTVTVRTTARAV 105 (112)
T ss_pred EEEEEECC---CCCcEEEEEEEEEecCCCe
Confidence 44 5565 3333444555555444333
No 10
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=48.33 E-value=44 Score=24.87 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=22.9
Q ss_pred EeeeecCCCC-CcceEEEEEEEEecCCCeeeEEEcceEEE
Q 028712 44 LPALDKSSNN-RNNTTLQFQLKLENTNKDKGVYYDDVNVT 82 (205)
Q Consensus 44 l~~f~~~~~s-~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~ 82 (205)
+.++.+..+. .-..++..++.+.||.. +++..+...+.
T Consensus 86 I~~~~v~~~~~~~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 86 ISDFDVTGGTPADGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred EeeEEeecCCCCCcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 4444433332 23566777888889995 77766665543
No 11
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=38.78 E-value=38 Score=27.51 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=26.7
Q ss_pred HHHHHHHHHheeeeeEEE-----------ecCCCEEEEEEEEEeeeecC
Q 028712 13 CSFIFTLGLTSLFMWLSL-----------RTSNPKCSIEGFYLPALDKS 50 (205)
Q Consensus 13 ~~~l~llgl~~lil~lvl-----------rP~~P~f~V~~~~l~~f~~~ 50 (205)
+.+++.+++.+++.|... .++.|.|..++++...|+..
T Consensus 8 ~~~il~~~~l~l~~W~l~~~~~~~~~~~~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 8 VIILLALIALVLIGWNLADKDEDTAPVVVNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred HHHHHHHHHHHHHHhhccCCccccccccCCCCCCCEEEeccEEEEECCC
Confidence 344555666677777532 46789999999998888754
No 12
>PLN03160 uncharacterized protein; Provisional
Probab=35.42 E-value=1.6e+02 Score=24.40 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=21.5
Q ss_pred CCceecchH-HHHHHHHHheeeeeEEEecCCCEEEEEEEEEeeeec
Q 028712 5 AGGCCRCCC-SFIFTLGLTSLFMWLSLRTSNPKCSIEGFYLPALDK 49 (205)
Q Consensus 5 ~~~Cc~~~~-~~l~llgl~~lil~lvlrP~~P~f~V~~~~l~~f~~ 49 (205)
++.||+||. ...+++.+++.++.+++--=.| +--.++++++++
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrP--k~P~~~v~~v~l 76 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVLVFTVFRV--KDPVIKMNGVTV 76 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHheeeEEEEc--cCCeEEEEEEEE
Confidence 444443433 3445666677777777733333 223344444443
No 13
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=35.23 E-value=2e+02 Score=21.75 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=38.9
Q ss_pred EEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeec
Q 028712 38 SIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVI 98 (205)
Q Consensus 38 ~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~l 98 (205)
.++.+++++..+....+.+-.+.++.+++|... ....|-.++++++-.+ |..+.+-.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~--g~~l~~r~~ 106 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQ--GQPLARRVF 106 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCC--CCEEEEEEE
Confidence 444555444333332234667888999999996 6899999999998543 667775554
No 14
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=33.16 E-value=2.1e+02 Score=21.76 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=34.3
Q ss_pred cceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeeccceeecCCceEEEEE
Q 028712 55 NNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVIGRFYQGHKKTAHKNG 113 (205)
Q Consensus 55 l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~lp~f~Q~~~~t~~v~~ 113 (205)
...+|+.+|++||.+.+-.|+-. .+-|-+..|..+-+---.|.+.++-.+..+-+
T Consensus 21 ~~~~Lt~tLSiRNtd~~~~i~i~----~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 21 RPFNLTATLSIRNTDPTDPIYIT----SVDYYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred ceEeEEEEEEEEcCCCCCCEEEE----EEEEECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 46789999999999887555443 34444333555543333467777777765543
No 15
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=32.15 E-value=14 Score=27.68 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=12.3
Q ss_pred HHHHHHheeeeeEEEecCCCE
Q 028712 16 IFTLGLTSLFMWLSLRTSNPK 36 (205)
Q Consensus 16 l~llgl~~lil~lvlrP~~P~ 36 (205)
++++.+.+.++||.+||+.=+
T Consensus 6 il~~vv~~~i~yf~iRPQkKr 26 (113)
T PRK06531 6 IIMFVVMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHHHHHHheechHHHH
Confidence 333444444567789997554
No 16
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.84 E-value=38 Score=26.75 Aligned_cols=71 Identities=11% Similarity=0.058 Sum_probs=38.8
Q ss_pred ceecchHH--HHHHHHHheeeeeEEEecCCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcce--EEE
Q 028712 7 GCCRCCCS--FIFTLGLTSLFMWLSLRTSNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDV--NVT 82 (205)
Q Consensus 7 ~Cc~~~~~--~l~llgl~~lil~lvlrP~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~--~v~ 82 (205)
.-.+|+.. ..++|+++++++|+..|++.-.|-=.+-. .++++++|+...++|.-+ ++.
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGk------------------vvtay~~n~~~~~w~~l~Gk~~~ 111 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGK------------------VVTAYRSNKLTKWWYSLLGKKIS 111 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCc------------------EEEEEcCchHHHHHHHHhCCccc
Confidence 34455443 34566777888888899987654222111 356778886555555321 123
Q ss_pred EEEcCCCceeEeeee
Q 028712 83 VYDFPNRSHIIGTSV 97 (205)
Q Consensus 83 v~Y~~~~g~~lg~~~ 97 (205)
=.|+. ..++|...
T Consensus 112 ~~y~s--~splg~~~ 124 (154)
T PF04478_consen 112 DKYES--NSPLGSTS 124 (154)
T ss_pred ccccc--CCCCCCCC
Confidence 34542 35666543
No 17
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=26.41 E-value=24 Score=23.00 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=6.5
Q ss_pred EEecCCCEE
Q 028712 29 SLRTSNPKC 37 (205)
Q Consensus 29 vlrP~~P~f 37 (205)
.|-|+.|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 577888764
No 18
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=24.34 E-value=17 Score=21.18 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=11.8
Q ss_pred HHHHHHHHHheeeeeE
Q 028712 13 CSFIFTLGLTSLFMWL 28 (205)
Q Consensus 13 ~~~l~llgl~~lil~l 28 (205)
+..+.++++.++++|+
T Consensus 9 l~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 9 LGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHH
Confidence 3456678888888886
No 19
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.00 E-value=69 Score=24.47 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=24.8
Q ss_pred CCceecchH---HHHHHHHHheeeeeEEEecCCCEEEE
Q 028712 5 AGGCCRCCC---SFIFTLGLTSLFMWLSLRTSNPKCSI 39 (205)
Q Consensus 5 ~~~Cc~~~~---~~l~llgl~~lil~lvlrP~~P~f~V 39 (205)
.-+|.+|.. ..++++|+++..+...+.++.+.+.+
T Consensus 45 e~s~Yrci~pfG~vili~GvvvT~vays~n~~~si~~~ 82 (129)
T PF15099_consen 45 EWSCYRCIMPFGVVILIAGVVVTAVAYSFNSHGSIISI 82 (129)
T ss_pred CceEEEEEEEehHHHHHHhhHhheeeEeecCCcchhhh
Confidence 446777654 35778899888888788877765443
No 20
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=20.46 E-value=3.9e+02 Score=20.23 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=51.9
Q ss_pred cCCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeeccceeecCCceEEE
Q 028712 32 TSNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVIGRFYQGHKKTAHK 111 (205)
Q Consensus 32 P~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~lp~f~Q~~~~t~~v 111 (205)
+-.|.+.+.++..... +..-.+.+.++||.. .-+.=-.+++.|+..+ .+..+.......+.-.|.+.-.+
T Consensus 25 ~~~p~L~l~~v~~~~~--------n~~~~i~~~l~N~~~-~~l~~~~v~a~V~~~~-~~k~~~~~~~~~~~mAPNS~f~~ 94 (140)
T PF11797_consen 25 EVPPKLKLGKVKPGQI--------NGRNVIQANLQNPQP-AILKKLTVDAKVTKKG-SKKVLYTFKKENMQMAPNSNFNF 94 (140)
T ss_pred ccCcccEEeeeeeeEE--------CCeeEEEEEEECCCc-hhhcCcEEEEEEEECC-CCeEEEEeeccCCEECCCCeEEe
Confidence 3467777777776543 335566677889984 2222223555666652 24567666666666666665544
Q ss_pred EEEEeeCCcccchhhhccceEEEEEEEEE
Q 028712 112 NGTAPTDQKVVSRAVFANGSAVFRVDLVT 140 (205)
Q Consensus 112 ~~~l~~~~~~l~~~~~~~G~v~l~v~v~~ 140 (205)
...+.+. ....|...+.+.++.
T Consensus 95 ~i~~~~~-------~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 95 PIPLGGK-------KLKPGKYTLKITAKS 116 (140)
T ss_pred EecCCCc-------CccCCEEEEEEEEEc
Confidence 3322222 246776666655543
Done!