Query 028712
Match_columns 205
No_of_seqs 119 out of 746
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 02:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.3 9.5E-06 3.3E-10 64.2 11.7 99 33-140 43-145 (174)
2 1xo8_A AT1G01470; structural g 98.1 4.7E-06 1.6E-10 64.5 6.0 100 33-141 20-123 (151)
3 3but_A Uncharacterized protein 97.5 0.0014 4.9E-08 49.5 11.8 88 54-147 15-107 (136)
4 3me0_B PAPG protein; immunoglo 28.2 1.7E+02 0.006 21.3 7.0 90 30-123 9-113 (128)
5 2kj1_A BM2 protein; cytoplasmi 19.6 22 0.00074 23.5 -0.1 13 58-70 9-21 (89)
6 1nrp_R Receptor based peptide 19.2 28 0.00095 17.8 0.3 10 64-73 7-16 (26)
7 1nei_A Hypothetical protein YO 18.5 91 0.0031 19.6 2.6 18 60-77 5-22 (60)
8 1nro_R Receptor based peptide 18.4 31 0.0011 17.7 0.4 9 64-72 7-15 (27)
9 3q8j_A Asteropsin A, ABU8-1; c 17.4 14 0.00048 20.4 -1.2 17 181-197 7-23 (37)
10 3qde_A Cellobiose phosphorylas 17.3 1.7E+02 0.006 27.6 5.5 57 27-100 741-797 (811)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.29 E-value=9.5e-06 Score=64.18 Aligned_cols=99 Identities=6% Similarity=0.109 Sum_probs=79.2
Q ss_pred CCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeecc-ceeecCCceEEE
Q 028712 33 SNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVIG-RFYQGHKKTAHK 111 (205)
Q Consensus 33 ~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~lp-~f~Q~~~~t~~v 111 (205)
+.|++++.++++.+++.. .+++.+.++++|||. ..+.++.++..+.-. |..++++..| ++..++++++.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vn---G~~lasG~s~~~~tIpa~g~~~v 113 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPICQISYILKSA---TRTIASGTIPDPGSLVGSGTTVL 113 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBCCSEEEEEEES---SSCEEEEEESCCCBCCSSEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccccceEEEEEEC---CEEEEEEecCCCceECCCCcEEE
Confidence 789999999999877643 478999999999996 899999999999988 8899999988 689999999999
Q ss_pred EEEEeeCCccc---chhhhccceEEEEEEEEE
Q 028712 112 NGTAPTDQKVV---SRAVFANGSAVFRVDLVT 140 (205)
Q Consensus 112 ~~~l~~~~~~l---~~~~~~~G~v~l~v~v~~ 140 (205)
.+.+..+-..+ ..++...+.++.++++..
T Consensus 114 ~Vpv~v~~~~l~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 114 DVPVKVAYSIAVSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EEEEEESHHHHHHTCCCCCSSEEECEEEEEEE
T ss_pred EEEEEEEHHHHHHHHHhcCCCCccceEEEEEE
Confidence 98888764332 233334456777666543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.09 E-value=4.7e-06 Score=64.46 Aligned_cols=100 Identities=11% Similarity=0.114 Sum_probs=76.9
Q ss_pred CCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeecc-ceeecCCceEEE
Q 028712 33 SNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVIG-RFYQGHKKTAHK 111 (205)
Q Consensus 33 ~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~lp-~f~Q~~~~t~~v 111 (205)
+.|++++.++++.+++. ...++.+.++++|||. ..+.++.++..+.-. |..++++..+ ++..++++++.+
T Consensus 20 ~~P~v~v~~v~~~~~~~-----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vn---g~~lasG~~~~~~~ipa~g~~~v 90 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSA---GREIGKGKIPDPGSLKAKDMTAL 90 (151)
T ss_dssp CSCCCBCSEEEECCCTT-----TEECEEEEEEEECSSS-SCCCCEEEEEEEESS---SSCEEEEEEEECCCCSSSSEEEE
T ss_pred CCCEEEEEEeEEeccCc-----ceeEEEEEEEEECCCC-CCcccccEEEEEEEC---CEEEEEEecCCCcEECCCCcEEE
Confidence 68998888888875543 4578999999999996 899999999999876 8899999888 788999999989
Q ss_pred EEEEeeCCccc---chhhhccceEEEEEEEEEE
Q 028712 112 NGTAPTDQKVV---SRAVFANGSAVFRVDLVTA 141 (205)
Q Consensus 112 ~~~l~~~~~~l---~~~~~~~G~v~l~v~v~~r 141 (205)
.+.+..+-..+ ..++...+.++.+++++..
T Consensus 91 ~vpv~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 91 DIPVVVPYSILFNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EECCCEEHHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEEHHHHHHHHHhcccCCcccEEEEEEEE
Confidence 88877654322 2333345667776665543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.55 E-value=0.0014 Score=49.54 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=65.2
Q ss_pred CcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeee-ccceeecCCceEEEEEEEeeCCcccchhh---hcc
Q 028712 54 RNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSV-IGRFYQGHKKTAHKNGTAPTDQKVVSRAV---FAN 129 (205)
Q Consensus 54 ~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~-lp~f~Q~~~~t~~v~~~l~~~~~~l~~~~---~~~ 129 (205)
.-.+.+.+.|++.|||. ..+.++.++..++.. |.++|++. ...+..++.+++.+.+++..+...+.+.. ..+
T Consensus 15 ~~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~ln---g~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~n 90 (136)
T 3but_A 15 DSQTEIVALAKVRNEDV-VPIVVSGYHYTIEMN---GVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIAN 90 (136)
T ss_dssp SSEEEEEEEEEEECCSS-SCEEEEEEEEEEEET---TEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHHT
T ss_pred CcEEEEEEEEEEeCCCC-cceeeeceEEEEEEC---CEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhhc
Confidence 34688999999999995 999999999999998 89999987 45889999998888888877654444321 233
Q ss_pred c-eEEEEEEEEEEEEEEEE
Q 028712 130 G-SAVFRVDLVTAVRFKII 147 (205)
Q Consensus 130 G-~v~l~v~v~~rvr~kvg 147 (205)
| +-.++++++. +++++
T Consensus 91 ge~s~l~i~~~~--~l~v~ 107 (136)
T 3but_A 91 GEKTKIRVAIKP--TIEIG 107 (136)
T ss_dssp TSEEEEEEEEEE--EEECC
T ss_pred CCceEEEEEEEE--EEEeC
Confidence 3 4455444444 44444
No 4
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=28.17 E-value=1.7e+02 Score=21.26 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=46.2
Q ss_pred EecCCCEEEEEEEEEeeeecCCCC---Cc----ceEEEEEEEE-ec--C--C--CeeeEEEcc-eEEEEEEcCCCceeEe
Q 028712 30 LRTSNPKCSIEGFYLPALDKSSNN---RN----NTTLQFQLKL-EN--T--N--KDKGVYYDD-VNVTVYDFPNRSHIIG 94 (205)
Q Consensus 30 lrP~~P~f~V~~~~l~~f~~~~~s---~l----~~~l~~~l~~-~N--P--N--~~~~i~Y~~-~~v~v~Y~~~~g~~lg 94 (205)
.||..|.++++--.|+.=.+.... ++ +...++.+.+ .| | | .++.+--++ .+..++-. |+..|
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lN---G~~~~ 85 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVN---GVDTG 85 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEET---TBCSS
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEEC---Ceecc
Confidence 489999999887776532222111 01 1123333433 22 1 1 233444433 44444444 67777
Q ss_pred eeeccceeecCCceEEEEEEEeeCCcccc
Q 028712 95 TSVIGRFYQGHKKTAHKNGTAPTDQKVVS 123 (205)
Q Consensus 95 ~~~lp~f~Q~~~~t~~v~~~l~~~~~~l~ 123 (205)
+..+ .|+.....+-.+...+.+....+.
T Consensus 86 e~~~-~~~~~~s~tvtV~S~L~g~~g~v~ 113 (128)
T 3me0_B 86 ETTM-RWYKAGTQNLTIGSRLYGESSKIQ 113 (128)
T ss_dssp EEEE-EESSSEEEEEEEEEEEEECSSSCC
T ss_pred ceeE-EEEecCCcEEEEEEEEecCcCccc
Confidence 7777 444433345667777766654444
No 5
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=19.56 E-value=22 Score=23.51 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=3.6
Q ss_pred EEEEEEEEecCCC
Q 028712 58 TLQFQLKLENTNK 70 (205)
Q Consensus 58 ~l~~~l~~~NPN~ 70 (205)
..++.++++|||+
T Consensus 9 gv~lki~ir~pnk 21 (89)
T 2kj1_A 9 GVNMKIRIKGPNK 21 (89)
T ss_dssp ---------CCCH
T ss_pred cCceEEEecCCCH
Confidence 3577889999997
No 6
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=19.17 E-value=28 Score=17.76 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=7.1
Q ss_pred EEecCCCeee
Q 028712 64 KLENTNKDKG 73 (205)
Q Consensus 64 ~~~NPN~~~~ 73 (205)
..+|||.+..
T Consensus 7 llrnpndkye 16 (26)
T 1nrp_R 7 LLRNPNDKYE 16 (26)
T ss_pred hhcCCCcccC
Confidence 4689998643
No 7
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=18.48 E-value=91 Score=19.57 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=13.5
Q ss_pred EEEEEEecCCCeeeEEEc
Q 028712 60 QFQLKLENTNKDKGVYYD 77 (205)
Q Consensus 60 ~~~l~~~NPN~~~~i~Y~ 77 (205)
.++|++.|-|..+++.|+
T Consensus 5 ~~~lTvTNnnnGVSVdk~ 22 (60)
T 1nei_A 5 TYTVTVTNNSNGVSVDYE 22 (60)
T ss_dssp CEEEEEEETTTCCEEEEE
T ss_pred eEEEEEEeCCCceEeecc
Confidence 356788898887777765
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=18.40 E-value=31 Score=17.72 Aligned_cols=9 Identities=33% Similarity=0.331 Sum_probs=6.7
Q ss_pred EEecCCCee
Q 028712 64 KLENTNKDK 72 (205)
Q Consensus 64 ~~~NPN~~~ 72 (205)
..+|||.+.
T Consensus 7 llrnpndky 15 (27)
T 1nro_R 7 LLRNPNDKY 15 (27)
T ss_pred cccCCCccc
Confidence 468999864
No 9
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=17.37 E-value=14 Score=20.44 Aligned_cols=17 Identities=47% Similarity=0.929 Sum_probs=13.9
Q ss_pred CCCCceeeeeeehhhhh
Q 028712 181 SGSNNVSYYCCCVGILL 197 (205)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ 197 (205)
+.+|||..|=||-|+-|
T Consensus 7 gescnvqfypccpglgl 23 (37)
T 3q8j_A 7 GESCNVQFYPCCPGLGL 23 (37)
T ss_dssp TSEEETTTBCBCTTSCE
T ss_pred CcccceEEecCCCCCCc
Confidence 56899999999988654
No 10
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=17.29 E-value=1.7e+02 Score=27.62 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=32.4
Q ss_pred eEEEecCCCEEEEEEEEEeeeecCCCCCcceEEEEEEEEecCCCeeeEEEcceEEEEEEcCCCceeEeeeeccc
Q 028712 27 WLSLRTSNPKCSIEGFYLPALDKSSNNRNNTTLQFQLKLENTNKDKGVYYDDVNVTVYDFPNRSHIIGTSVIGR 100 (205)
Q Consensus 27 ~lvlrP~~P~f~V~~~~l~~f~~~~~s~l~~~l~~~l~~~NPN~~~~i~Y~~~~v~v~Y~~~~g~~lg~~~lp~ 100 (205)
-|.++|..|.. ++.+++. +.+.. . .+.|+++||+.. . .....+.-. |..+....+|-
T Consensus 741 ~L~i~P~LP~~-w~~~~~~-~~~~g-----~--~~~I~v~~~~~~-~----~~~~~~~~d---g~~~~~~~i~~ 797 (811)
T 3qde_A 741 GLKIDPCIPKA-WDGYKVT-RYFRG-----S--TYEITVKNPNHV-S----KGVAKITVD---GNEISGNILPV 797 (811)
T ss_dssp EEEECCBCCTT-CCEEEEE-EEETT-----E--EEEEEEECTTCC-S----BCEEEEEET---TEECSSSBCCC
T ss_pred EEEEeCcCCcc-cCcEEEE-EEECC-----E--EEEEEEEccCCC-C----CCcEEEEEC---CEECcCCeeee
Confidence 45678988876 6666665 34332 2 355667799752 1 223344444 66665555664
Done!