BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028713
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
          Length = 219

 Score = 77.0 bits (188), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 16/174 (9%)

Query: 30  LISVLIWLCLKPISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNERIGIYYN 89
           L S+ +WL L+   P   I N ++PAL +  ++   R+N+ +N      NPN+  GIYY+
Sbjct: 27  LTSLFLWLSLRADKPKCSIQNFFIPALGKDPNS---RDNTTLNFMVRCDNPNKDKGIYYD 83

Query: 90  DIIITLYYKDT---------VIGTNSLAGFYQGYKKATSYGVLVNATDDHQLLRRGVLTG 140
           D+ +     +T         ++G  ++  FYQG+KK       V   ++  +LR  +  G
Sbjct: 84  DVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKPLNNQTVLRAVLPNG 143

Query: 141 NTTTVEMIRVCLKTAVRYKIFLSTTKHHRMNFEACICIGSDGRISGQREIKLQQ 194
           +     + R+ LKT VR+KI    TK + +   A + +  DG  + ++ IK+++
Sbjct: 144 SA----VFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDGVKAQKKGIKMKK 193


>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
          Length = 416

 Score = 32.3 bits (72), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 71  VNLNFELSNPNERIGIYYNDIIITLYYKDTVIGTNSLAGFYQGYK 115
           ++LN  + N    IGI+Y+    T+YY +  +G   +  FY G K
Sbjct: 31  LSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLFYLGSK 75


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,666,654
Number of Sequences: 539616
Number of extensions: 2877979
Number of successful extensions: 6273
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6267
Number of HSP's gapped (non-prelim): 4
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)