Query 028713
Match_columns 205
No_of_seqs 136 out of 789
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 15:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 2.1E-35 4.5E-40 240.3 23.6 179 14-202 36-218 (219)
2 PF03168 LEA_2: Late embryogen 99.3 5.6E-12 1.2E-16 89.8 8.2 97 74-175 1-100 (101)
3 smart00769 WHy Water Stress an 98.3 1.4E-05 3.1E-10 57.1 10.7 58 67-125 13-72 (100)
4 PF07092 DUF1356: Protein of u 98.3 0.0001 2.2E-09 60.4 16.7 106 5-118 67-173 (238)
5 COG5608 LEA14-like dessication 97.1 0.027 5.9E-07 43.1 12.6 77 42-127 31-109 (161)
6 PF12751 Vac7: Vacuolar segreg 97.0 0.0015 3.2E-08 57.0 6.1 36 68-104 347-382 (387)
7 PLN03160 uncharacterized prote 94.1 0.17 3.7E-06 41.3 6.3 7 84-90 116-122 (219)
8 TIGR02588 conserved hypothetic 73.0 6.5 0.00014 29.1 4.0 50 23-82 11-62 (122)
9 PRK05529 cell division protein 62.6 9.2 0.0002 31.9 3.4 47 43-90 58-128 (255)
10 PRK07021 fliL flagellar basal 57.7 17 0.00038 28.0 4.0 17 85-101 77-93 (162)
11 PF12505 DUF3712: Protein of u 47.0 62 0.0013 23.6 5.3 26 68-94 99-124 (125)
12 PRK10893 lipopolysaccharide ex 45.4 1.1E+02 0.0024 24.3 6.9 20 40-59 37-56 (192)
13 PF14155 DUF4307: Domain of un 39.7 56 0.0012 23.6 4.0 68 29-109 16-86 (112)
14 PRK06531 yajC preprotein trans 36.9 12 0.00027 27.3 0.2 15 30-44 11-25 (113)
15 PF15012 DUF4519: Domain of un 35.5 42 0.00091 21.3 2.4 17 26-42 40-56 (56)
16 PF14927 Neurensin: Neurensin 33.9 35 0.00076 25.9 2.2 22 23-46 52-74 (140)
17 PF12273 RCR: Chitin synthesis 33.0 5.3 0.00011 29.7 -2.4 6 20-25 2-7 (130)
18 PF11606 AlcCBM31: Family 31 c 33.0 35 0.00077 23.6 1.9 23 78-100 4-27 (93)
19 COG4698 Uncharacterized protei 32.4 30 0.00066 27.4 1.7 36 16-53 13-48 (197)
20 PF07423 DUF1510: Protein of u 32.1 21 0.00044 29.2 0.8 15 27-41 23-37 (217)
21 PF05473 Herpes_UL45: UL45 pro 31.4 18 0.00039 29.1 0.3 8 10-17 41-48 (200)
22 PF09624 DUF2393: Protein of u 31.2 1.3E+02 0.0029 22.5 5.1 67 27-105 29-97 (149)
23 PF04478 Mid2: Mid2 like cell 31.2 36 0.00077 26.3 1.9 21 25-45 61-81 (154)
24 PF10907 DUF2749: Protein of u 30.3 80 0.0017 20.7 3.1 16 27-42 13-28 (66)
25 PF11837 DUF3357: Domain of un 30.1 17 0.00037 26.1 0.0 19 16-34 29-48 (106)
26 PF14283 DUF4366: Domain of un 29.8 82 0.0018 25.7 3.9 9 38-46 182-190 (218)
27 COG1589 FtsQ Cell division sep 28.1 29 0.00064 29.0 1.1 30 26-55 40-69 (269)
28 PF10614 CsgF: Type VIII secre 27.9 52 0.0011 25.1 2.3 11 36-46 23-33 (142)
29 PF06692 MNSV_P7B: Melon necro 26.7 31 0.00068 21.8 0.7 9 38-46 31-39 (61)
30 KOG3950 Gamma/delta sarcoglyca 24.7 1.1E+02 0.0023 25.7 3.6 25 64-88 103-127 (292)
31 COG1580 FliL Flagellar basal b 24.2 2.1E+02 0.0045 22.2 5.0 24 16-39 19-42 (159)
32 PF08113 CoxIIa: Cytochrome c 23.5 26 0.00056 19.8 -0.1 14 24-37 11-24 (34)
33 PF03376 Adeno_E3B: Adenovirus 22.7 15 0.00033 23.9 -1.2 31 17-47 22-57 (67)
34 PF09911 DUF2140: Uncharacteri 22.6 1.1E+02 0.0024 24.3 3.3 19 26-44 13-31 (187)
35 PF11395 DUF2873: Protein of u 22.0 46 0.001 19.3 0.8 21 19-39 11-32 (43)
36 PF06092 DUF943: Enterobacteri 21.3 48 0.001 25.7 1.0 16 26-41 13-28 (157)
37 PTZ00116 signal peptidase; Pro 21.1 1.6E+02 0.0035 23.4 4.0 55 41-99 36-93 (185)
38 PF09047 MEF2_binding: MEF2 bi 20.7 18 0.0004 20.1 -1.0 18 178-195 3-20 (35)
39 PF13396 PLDc_N: Phospholipase 20.4 1.1E+02 0.0023 17.9 2.3 17 26-42 30-46 (46)
40 KOG3385 V-SNARE [Intracellular 20.3 66 0.0014 23.6 1.5 21 19-39 97-117 (118)
41 PF04573 SPC22: Signal peptida 20.3 1.7E+02 0.0036 23.0 3.9 13 39-51 32-44 (175)
42 KOG2621 Prohibitins and stomat 20.2 5.5E+02 0.012 21.9 8.2 37 45-81 91-131 (288)
43 PF12321 DUF3634: Protein of u 20.0 29 0.00062 25.2 -0.4 19 30-48 8-28 (108)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=240.25 Aligned_cols=179 Identities=17% Similarity=0.176 Sum_probs=147.6
Q ss_pred cccchhhHHHHH-HHHHHHheeeeEEEecCCcEEEEEEeEeceeecCCCC-CCeeeeeEEEEEEEEeCCCCeEEEEEecE
Q 028713 14 KISVLLWLCQVV-IVWVLISVLIWLCLKPISPVYMITNAYVPALNQHNST-EPIRNNSVVNLNFELSNPNERIGIYYNDI 91 (205)
Q Consensus 14 ~~~Cc~~~~~~l-vll~i~~li~~lvlrP~~P~~~v~~~~v~~~~~~~~~-~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~ 91 (205)
..+||.|+++++ +++++++.++|++|||++|+|+|+++++++|+++.++ .+..+|++++++++++|||. ++|+|+++
T Consensus 36 ~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~ 114 (219)
T PLN03160 36 CIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNT 114 (219)
T ss_pred ceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCe
Confidence 345666666655 4556666777889999999999999999999987632 23468999999999999999 99999999
Q ss_pred EEEEEECCEEEecccCCceeecccCeEE-EEEEEeecccCChhhHHhhhcccc-ceEEEEEEEEEEEEEEEEEEEEccee
Q 028713 92 IITLYYKDTVIGTNSLAGFYQGYKKATS-YGVLVNATDDHQLLRRGVLTGNTT-TVEMIRVCLKTAVRYKIFLSTTKHHR 169 (205)
Q Consensus 92 ~~~v~Y~g~~lg~~~vp~f~q~~~~~~~-~~~l~~~~~~l~~~~~~~l~~d~~-g~v~l~v~v~~~vr~kvg~~~~~~~~ 169 (205)
++.++|+|..+|++.+|+|+|++++++. .+++......+.. ...|.+|.. |.++|++++++++++++|++.++++.
T Consensus 115 ~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~ 192 (219)
T PLN03160 115 TTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVV 192 (219)
T ss_pred EEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEE
Confidence 9999999999999999999999999888 7776544432222 256888988 99999999999999999999999999
Q ss_pred EEEEEEEEECCCCcccCCCcchhhhheeeeccc
Q 028713 170 MNFEACICIGSDGRISGQREIKLQQMMAKEKIK 202 (205)
Q Consensus 170 ~~v~C~l~v~~~G~~~~~~~~~~~~~~~~~~~~ 202 (205)
.+++|++.|+... ..++...||.|+|
T Consensus 193 ~~v~C~v~V~~~~-------~~i~~~~C~~~~~ 218 (219)
T PLN03160 193 VKMNCTMTVNITS-------QAIQGQKCKRHVD 218 (219)
T ss_pred EEEEeEEEEECCC-------CEEeccEeccccc
Confidence 9999999998632 3566667888775
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.34 E-value=5.6e-12 Score=89.79 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=67.4
Q ss_pred EEEEeCCCCeEEEEEecEEEEEEECCEEEe-cccCCceeecccCeEE-EEEEEeecccCChhhHHhhhccccceEEEEEE
Q 028713 74 NFELSNPNERIGIYYNDIIITLYYKDTVIG-TNSLAGFYQGYKKATS-YGVLVNATDDHQLLRRGVLTGNTTTVEMIRVC 151 (205)
Q Consensus 74 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~~~~-~~~l~~~~~~l~~~~~~~l~~d~~g~v~l~v~ 151 (205)
+|+++|||. ++++|++++++++|+|..+| ....++|+|++++++. .+.+......+ .+.+.++.+|..++++.
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~~~~~~~~v~ 75 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLLAGRVPFDVT 75 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHHHTTSCEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhhccccceEEE
Confidence 589999999 99999999999999999999 6678999999999988 77776665433 23333222245566667
Q ss_pred EEEEEEEEE-EEEEEcceeEEEEEE
Q 028713 152 LKTAVRYKI-FLSTTKHHRMNFEAC 175 (205)
Q Consensus 152 v~~~vr~kv-g~~~~~~~~~~v~C~ 175 (205)
+++++++++ +.+...++.+.++|+
T Consensus 76 ~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 76 YRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEcccceeeeEEEeEEeE
Confidence 777777774 444334455555553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.30 E-value=1.4e-05 Score=57.14 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=52.0
Q ss_pred eeeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEecccCC-ceeecccCeEE-EEEEEe
Q 028713 67 NNSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGTNSLA-GFYQGYKKATS-YGVLVN 125 (205)
Q Consensus 67 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~-~~~l~~ 125 (205)
++.++.+.+.+.|||. +.+.|+.++.+++|.|..+|++..+ +...++++++. .+.+..
T Consensus 13 ~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 13 LEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred eEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 6889999999999998 9999999999999999999999985 78888888776 666665
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.29 E-value=0.0001 Score=60.36 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=65.6
Q ss_pred CCCcccccCcccchhhHHHHHHHHHHHheeeeEEEecCCcEEEEEEeEeceeecCCCCCCeeeeeEEEEEEEEeCCCCeE
Q 028713 5 MRLREETKSKISVLLWLCQVVIVWVLISVLIWLCLKPISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNERI 84 (205)
Q Consensus 5 ~r~~~~~~~~~~Cc~~~~~~lvll~i~~li~~lvlrP~~P~~~v~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~ 84 (205)
.|++||| .++-.++..++.++...+++++|. |+.-.++-.++......++.... .+..++.-.+.+.|||. +
T Consensus 67 qRLKPrR---TklyV~~sV~~CLl~~~L~iFFLf--PRsV~v~~~gv~s~~V~f~~~~~--~v~l~itn~lNIsN~NF-y 138 (238)
T PF07092_consen 67 QRLKPRR---TKLYVFLSVLLCLLLSGLVIFFLF--PRSVTVSPVGVKSVTVSFNPDKS--TVQLNITNTLNISNPNF-Y 138 (238)
T ss_pred cccCCce---eEEEeeHHHHHHHHHHHheEEEEe--CcEEEEecCcEEEEEEEEeCCCC--EEEEEEEEEEEccCCCE-E
Confidence 4555554 344444444444444444444443 66554444443333333333322 36778888899999997 9
Q ss_pred EEEEecEEEEEEECCEEEecccCCc-eeecccCeE
Q 028713 85 GIYYNDIIITLYYKDTVIGTNSLAG-FYQGYKKAT 118 (205)
Q Consensus 85 ~i~Y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~~~ 118 (205)
.+.-.++.+++.|....+|.+.... ...++++.+
T Consensus 139 ~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~ 173 (238)
T PF07092_consen 139 PVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSK 173 (238)
T ss_pred EEEEEeEEEEEEEEEeEEeeeEecceEEecccCCc
Confidence 9999999999999999999987743 344555443
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.09 E-value=0.027 Score=43.07 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=59.1
Q ss_pred CCcEEEEEEeEeceeecCCCCCCeeeeeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEecccC-CceeecccCeEE-
Q 028713 42 ISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGTNSL-AGFYQGYKKATS- 119 (205)
Q Consensus 42 ~~P~~~v~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~~~~- 119 (205)
++|.+.--.+..-... + ....+-.++.++|||. +.+-...++.+++-.|..+|++.. .++..++++...
T Consensus 31 ~~p~ve~~ka~wGkvt--~------s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tv 101 (161)
T COG5608 31 KKPGVESMKAKWGKVT--N------SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETV 101 (161)
T ss_pred CCCCceEEEEEEEEEe--c------cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEE
Confidence 5676666666555432 2 2457888999999998 999999999999999999999986 678888777666
Q ss_pred EEEEEeec
Q 028713 120 YGVLVNAT 127 (205)
Q Consensus 120 ~~~l~~~~ 127 (205)
.+.+..+.
T Consensus 102 dv~l~~d~ 109 (161)
T COG5608 102 DVPLRLDN 109 (161)
T ss_pred EEEEEEeh
Confidence 66666544
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.03 E-value=0.0015 Score=56.96 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=30.6
Q ss_pred eeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEec
Q 028713 68 NSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGT 104 (205)
Q Consensus 68 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~ 104 (205)
-.-|++++.+.|||. +.|..++.+++||-+..-+|.
T Consensus 347 ELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 347 ELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred eEEEeeEEEEECCCe-EEEEeccceeeeEecCCccCc
Confidence 467899999999998 999999999999987655543
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=94.07 E-value=0.17 Score=41.30 Aligned_cols=7 Identities=43% Similarity=0.876 Sum_probs=3.5
Q ss_pred EEEEEec
Q 028713 84 IGIYYND 90 (205)
Q Consensus 84 ~~i~Y~~ 90 (205)
+.++|+.
T Consensus 116 ~~v~Y~g 122 (219)
T PLN03160 116 TTIYYGG 122 (219)
T ss_pred EEEEECC
Confidence 4555544
No 8
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=72.96 E-value=6.5 Score=29.09 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHHHHHHheeeeEE--EecCCcEEEEEEeEeceeecCCCCCCeeeeeEEEEEEEEeCCCC
Q 028713 23 QVVIVWVLISVLIWLC--LKPISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNE 82 (205)
Q Consensus 23 ~~lvll~i~~li~~lv--lrP~~P~~~v~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~NPN~ 82 (205)
+.+++++++.+++|.. -+++.|.+++......+- ....+.+-++++|--.
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~----------~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM----------QTGQYYVPFAIHNLGG 62 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE----------eCCEEEEEEEEEeCCC
Confidence 3446777777887754 456789998877655431 2345677788888665
No 9
>PRK05529 cell division protein FtsQ; Provisional
Probab=62.62 E-value=9.2 Score=31.88 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=28.9
Q ss_pred CcEEEEEEeEeceeecCCC-----------CCCe-------------eeeeEEEEEEEEeCCCCeEEEEEec
Q 028713 43 SPVYMITNAYVPALNQHNS-----------TEPI-------------RNNSVVNLNFELSNPNERIGIYYND 90 (205)
Q Consensus 43 ~P~~~v~~~~v~~~~~~~~-----------~~~~-------------~l~~~l~~~l~~~NPN~~~~i~Y~~ 90 (205)
.|.|.|..+.|++-..-+. ..++ .+-.-=++.++-+.||. +.|+...
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 5899999999986432110 0010 12233466788889997 8887744
No 10
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=57.68 E-value=17 Score=27.97 Aligned_cols=17 Identities=18% Similarity=-0.033 Sum_probs=11.7
Q ss_pred EEEEecEEEEEEECCEE
Q 028713 85 GIYYNDIIITLYYKDTV 101 (205)
Q Consensus 85 ~i~Y~~~~~~v~Y~g~~ 101 (205)
+-+|=...+.+.+.+..
T Consensus 77 ~~rylkv~i~L~~~~~~ 93 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEA 93 (162)
T ss_pred CceEEEEEEEEEECCHH
Confidence 45777777777776543
No 11
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=46.97 E-value=62 Score=23.58 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=20.7
Q ss_pred eeEEEEEEEEeCCCCeEEEEEecEEEE
Q 028713 68 NSVVNLNFELSNPNERIGIYYNDIIIT 94 (205)
Q Consensus 68 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~ 94 (205)
..++..++.+.||.. +++...++.++
T Consensus 99 g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 567788899999997 88877776654
No 12
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=45.44 E-value=1.1e+02 Score=24.32 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.0
Q ss_pred ecCCcEEEEEEeEeceeecC
Q 028713 40 KPISPVYMITNAYVPALNQH 59 (205)
Q Consensus 40 rP~~P~~~v~~~~v~~~~~~ 59 (205)
.++.|.|.+++++...|+.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46779999999998888653
No 13
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=39.67 E-value=56 Score=23.62 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=29.7
Q ss_pred HHHheeeeEEEe-cCCcEEEEEEeEeceeecCCCCCCeeeeeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEeccc-
Q 028713 29 VLISVLIWLCLK-PISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGTNS- 106 (205)
Q Consensus 29 ~i~~li~~lvlr-P~~P~~~v~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~- 106 (205)
.+++++.|+.+. ...|.++-+.+ +|.+.+++ ++.+++.++-. |... .+. .--...|.+..+|.-.
T Consensus 16 v~~~~~~w~~~~~~~~~~v~~~~~---gf~vv~d~-----~v~v~f~Vtr~-~~~~--a~C--~VrA~~~d~aeVGrreV 82 (112)
T PF14155_consen 16 VAGAVVAWFGYSQFGSPPVSAEVI---GFEVVDDS-----TVEVTFDVTRD-PGRP--AVC--IVRALDYDGAEVGRREV 82 (112)
T ss_pred HHHHHHhHhhhhhccCCCceEEEE---EEEECCCC-----EEEEEEEEEEC-CCCC--EEE--EEEEEeCCCCEEEEEEE
Confidence 333444444443 44555543333 34444433 34444444444 6542 111 0112335666777644
Q ss_pred -CCc
Q 028713 107 -LAG 109 (205)
Q Consensus 107 -vp~ 109 (205)
+|+
T Consensus 83 ~vp~ 86 (112)
T PF14155_consen 83 LVPP 86 (112)
T ss_pred EECC
Confidence 455
No 14
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=36.87 E-value=12 Score=27.29 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=8.7
Q ss_pred HHheeeeEEEecCCc
Q 028713 30 LISVLIWLCLKPISP 44 (205)
Q Consensus 30 i~~li~~lvlrP~~P 44 (205)
+++.++|+.+||+.=
T Consensus 11 v~~~i~yf~iRPQkK 25 (113)
T PRK06531 11 VMLGLIFFMQRQQKK 25 (113)
T ss_pred HHHHHHHheechHHH
Confidence 333345667899543
No 15
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=35.48 E-value=42 Score=21.30 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=11.2
Q ss_pred HHHHHHheeeeEEEecC
Q 028713 26 IVWVLISVLIWLCLKPI 42 (205)
Q Consensus 26 vll~i~~li~~lvlrP~ 42 (205)
+++.++++++|+.-||+
T Consensus 40 ~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 40 AVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHhheeEEeccCC
Confidence 34445667778878874
No 16
>PF14927 Neurensin: Neurensin
Probab=33.94 E-value=35 Score=25.92 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=12.3
Q ss_pred HHHHHHHHHheee-eEEEecCCcEE
Q 028713 23 QVVIVWVLISVLI-WLCLKPISPVY 46 (205)
Q Consensus 23 ~~lvll~i~~li~-~lvlrP~~P~~ 46 (205)
.+++++|++++++ |++ |++++.
T Consensus 52 ~l~Ll~Gi~~l~vgY~v--P~~~e~ 74 (140)
T PF14927_consen 52 LLLLLLGIVALTVGYLV--PPKIEV 74 (140)
T ss_pred HHHHHHHHHHHHhhccc--CCccee
Confidence 3446777776665 543 644443
No 17
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.99 E-value=5.3 Score=29.65 Aligned_cols=6 Identities=17% Similarity=0.839 Sum_probs=2.2
Q ss_pred hHHHHH
Q 028713 20 WLCQVV 25 (205)
Q Consensus 20 ~~~~~l 25 (205)
|+++++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 333333
No 18
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=32.99 E-value=35 Score=23.55 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=18.3
Q ss_pred eCCCCeEEEEE-ecEEEEEEECCE
Q 028713 78 SNPNERIGIYY-NDIIITLYYKDT 100 (205)
Q Consensus 78 ~NPN~~~~i~Y-~~~~~~v~Y~g~ 100 (205)
+||+..+++.| ++.++.|++.+.
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~ 27 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDN 27 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE--
T ss_pred CCcchhhCeeeecCceEEEEEecC
Confidence 58899999999 558999998865
No 19
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.35 E-value=30 Score=27.41 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=21.1
Q ss_pred cchhhHHHHHHHHHHHheeeeEEEecCCcEEEEEEeEe
Q 028713 16 SVLLWLCQVVIVWVLISVLIWLCLKPISPVYMITNAYV 53 (205)
Q Consensus 16 ~Cc~~~~~~lvll~i~~li~~lvlrP~~P~~~v~~~~v 53 (205)
|.|.|++++.++++ ++++..++.|+.|...+.+++=
T Consensus 13 w~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 13 WLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 44444444444333 5555567889997766666543
No 20
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=32.11 E-value=21 Score=29.22 Aligned_cols=15 Identities=20% Similarity=0.230 Sum_probs=6.2
Q ss_pred HHHHHheeeeEEEec
Q 028713 27 VWVLISVLIWLCLKP 41 (205)
Q Consensus 27 ll~i~~li~~lvlrP 41 (205)
++.+|+++.|.+|-+
T Consensus 23 V~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 23 VSLLIIIVAYQLFFG 37 (217)
T ss_pred HHHHHHHHhhhheec
Confidence 333444444444433
No 21
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=31.39 E-value=18 Score=29.09 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=3.1
Q ss_pred cccCcccc
Q 028713 10 ETKSKISV 17 (205)
Q Consensus 10 ~~~~~~~C 17 (205)
+++++..|
T Consensus 41 ~~~s~~~~ 48 (200)
T PF05473_consen 41 KRKSPCAC 48 (200)
T ss_pred ccCCCccc
Confidence 33344334
No 22
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=31.21 E-value=1.3e+02 Score=22.45 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=41.2
Q ss_pred HHHHHheeeeEEEec--CCcEEEEEEeEeceeecCCCCCCeeeeeEEEEEEEEeCCCCeEEEEEecEEEEEEECCEEEec
Q 028713 27 VWVLISVLIWLCLKP--ISPVYMITNAYVPALNQHNSTEPIRNNSVVNLNFELSNPNERIGIYYNDIIITLYYKDTVIGT 104 (205)
Q Consensus 27 ll~i~~li~~lvlrP--~~P~~~v~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~ 104 (205)
++.++.+++|.++.. +.|..++.+.+- +. .+-.+.+..+++|-.+ ..+..=.+++++...+...++
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--l~---------~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 29 LAFLIPFFGYYWLDKYLKKIELTLTSQKR--LQ---------YSESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEeeeee--ee---------eccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCc
Confidence 333444555554444 346665555443 22 2346677899999987 688887888888886654444
Q ss_pred c
Q 028713 105 N 105 (205)
Q Consensus 105 ~ 105 (205)
.
T Consensus 97 ~ 97 (149)
T PF09624_consen 97 K 97 (149)
T ss_pred h
Confidence 3
No 23
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=31.16 E-value=36 Score=26.25 Aligned_cols=21 Identities=10% Similarity=0.363 Sum_probs=15.0
Q ss_pred HHHHHHHheeeeEEEecCCcE
Q 028713 25 VIVWVLISVLIWLCLKPISPV 45 (205)
Q Consensus 25 lvll~i~~li~~lvlrP~~P~ 45 (205)
.++++++++++|+..|++.=.
T Consensus 61 ~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred HHHHHHHHhheeEEEecccCc
Confidence 345677778888888887643
No 24
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=30.27 E-value=80 Score=20.66 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=12.7
Q ss_pred HHHHHheeeeEEEecC
Q 028713 27 VWVLISVLIWLCLKPI 42 (205)
Q Consensus 27 ll~i~~li~~lvlrP~ 42 (205)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 5556778889999998
No 25
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=30.11 E-value=17 Score=26.08 Aligned_cols=19 Identities=11% Similarity=0.336 Sum_probs=0.0
Q ss_pred cchhh-HHHHHHHHHHHhee
Q 028713 16 SVLLW-LCQVVIVWVLISVL 34 (205)
Q Consensus 16 ~Cc~~-~~~~lvll~i~~li 34 (205)
.|+.. ++.+++++.+++++
T Consensus 29 k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 29 KCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45543 44555555555555
No 26
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=29.76 E-value=82 Score=25.72 Aligned_cols=9 Identities=22% Similarity=0.135 Sum_probs=6.3
Q ss_pred EEecCCcEE
Q 028713 38 CLKPISPVY 46 (205)
Q Consensus 38 vlrP~~P~~ 46 (205)
++|||....
T Consensus 182 ~~K~K~~~~ 190 (218)
T PF14283_consen 182 FYKPKQEEK 190 (218)
T ss_pred Eeccccccc
Confidence 788877654
No 27
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=28.06 E-value=29 Score=28.97 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=24.4
Q ss_pred HHHHHHheeeeEEEecCCcEEEEEEeEece
Q 028713 26 IVWVLISVLIWLCLKPISPVYMITNAYVPA 55 (205)
Q Consensus 26 vll~i~~li~~lvlrP~~P~~~v~~~~v~~ 55 (205)
+++++.++++|...-+..|.|.+..+.+++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 40 VLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 566667777788778888999999999887
No 28
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=27.89 E-value=52 Score=25.05 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=9.1
Q ss_pred eEEEecCCcEE
Q 028713 36 WLCLKPISPVY 46 (205)
Q Consensus 36 ~lvlrP~~P~~ 46 (205)
=|+|+|..|.|
T Consensus 23 eLVY~PvNPsF 33 (142)
T PF10614_consen 23 ELVYTPVNPSF 33 (142)
T ss_pred heEeeccCCCC
Confidence 37999999976
No 29
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=26.70 E-value=31 Score=21.80 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=6.7
Q ss_pred EEecCCcEE
Q 028713 38 CLKPISPVY 46 (205)
Q Consensus 38 vlrP~~P~~ 46 (205)
.|-|+.|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 477888876
No 30
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=24.71 E-value=1.1e+02 Score=25.68 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.5
Q ss_pred CeeeeeEEEEEEEEeCCCCeEEEEE
Q 028713 64 PIRNNSVVNLNFELSNPNERIGIYY 88 (205)
Q Consensus 64 ~~~l~~~l~~~l~~~NPN~~~~i~Y 88 (205)
++.+...=++++.++|||.++.=+.
T Consensus 103 ~l~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 103 PLYLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred ceEEEeccCeeEEccCCCCceeeeE
Confidence 4567788899999999998765443
No 31
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=24.15 E-value=2.1e+02 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.294 Sum_probs=13.5
Q ss_pred cchhhHHHHHHHHHHHheeeeEEE
Q 028713 16 SVLLWLCQVVIVWVLISVLIWLCL 39 (205)
Q Consensus 16 ~Cc~~~~~~lvll~i~~li~~lvl 39 (205)
+-...+..+++++++.+..+|+..
T Consensus 19 ~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 19 WILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred ehHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333444466666777777664
No 32
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=23.49 E-value=26 Score=19.78 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=8.3
Q ss_pred HHHHHHHHheeeeE
Q 028713 24 VVIVWVLISVLIWL 37 (205)
Q Consensus 24 ~lvll~i~~li~~l 37 (205)
.+.+++++++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 34556666666664
No 33
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=22.73 E-value=15 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=17.6
Q ss_pred chhhHHHHH-HHHHHHheeeeE----EEecCCcEEE
Q 028713 17 VLLWLCQVV-IVWVLISVLIWL----CLKPISPVYM 47 (205)
Q Consensus 17 Cc~~~~~~l-vll~i~~li~~l----vlrP~~P~~~ 47 (205)
||.|+|+++ +++..+-++=|. +++-++|.+.
T Consensus 22 ~c~~iCSi~~~~it~~Q~iDy~~vR~~Y~RHhPqYr 57 (67)
T PF03376_consen 22 TCTCICSIVCFVITFFQCIDYIYVRIAYRRHHPQYR 57 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhc
Confidence 566666665 444445454443 3556777764
No 34
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=22.57 E-value=1.1e+02 Score=24.25 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=13.5
Q ss_pred HHHHHHheeeeEEEecCCc
Q 028713 26 IVWVLISVLIWLCLKPISP 44 (205)
Q Consensus 26 vll~i~~li~~lvlrP~~P 44 (205)
+++++++++++.++.|..|
T Consensus 13 ~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 13 LNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHhheeeEEEccCCC
Confidence 4556666677778899876
No 35
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=22.02 E-value=46 Score=19.25 Aligned_cols=21 Identities=14% Similarity=0.656 Sum_probs=8.9
Q ss_pred hhHHHHHHHH-HHHheeeeEEE
Q 028713 19 LWLCQVVIVW-VLISVLIWLCL 39 (205)
Q Consensus 19 ~~~~~~lvll-~i~~li~~lvl 39 (205)
.|++++++.+ .+..+|+|.++
T Consensus 11 lc~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 11 LCFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 33334455443
No 36
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=21.34 E-value=48 Score=25.67 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=10.4
Q ss_pred HHHHHHheeeeEEEec
Q 028713 26 IVWVLISVLIWLCLKP 41 (205)
Q Consensus 26 vll~i~~li~~lvlrP 41 (205)
+++++++.++|+.+||
T Consensus 13 ~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 13 FLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHhhhhccCC
Confidence 3333333788888898
No 37
>PTZ00116 signal peptidase; Provisional
Probab=21.08 E-value=1.6e+02 Score=23.42 Aligned_cols=55 Identities=11% Similarity=-0.037 Sum_probs=28.2
Q ss_pred cCCcEEEEEEeEeceeecCCC--CCCeeeeeEEEEEEEE-eCCCCeEEEEEecEEEEEEECC
Q 028713 41 PISPVYMITNAYVPALNQHNS--TEPIRNNSVVNLNFEL-SNPNERIGIYYNDIIITLYYKD 99 (205)
Q Consensus 41 P~~P~~~v~~~~v~~~~~~~~--~~~~~l~~~l~~~l~~-~NPN~~~~i~Y~~~~~~v~Y~g 99 (205)
+..|...|+-.+|.+|..... .+-+.++.+++++++- =|=|.+.-+- .+.+.|.+
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFv----yv~a~Y~t 93 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFL----YVLVTYET 93 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEE----EEEEEEcC
Confidence 356667777667778765432 2223344444444432 3555543332 24455653
No 38
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=20.69 E-value=18 Score=20.05 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=9.7
Q ss_pred ECCCCcccCCCcchhhhh
Q 028713 178 IGSDGRISGQREIKLQQM 195 (205)
Q Consensus 178 v~~~G~~~~~~~~~~~~~ 195 (205)
+.|.|.++.+.++|+|..
T Consensus 3 lspkgsiseetkqklk~~ 20 (35)
T PF09047_consen 3 LSPKGSISEETKQKLKSA 20 (35)
T ss_dssp ---SS---HHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHHH
Confidence 457899999988888754
No 39
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=20.39 E-value=1.1e+02 Score=17.92 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=12.0
Q ss_pred HHHHHHheeeeEEEecC
Q 028713 26 IVWVLISVLIWLCLKPI 42 (205)
Q Consensus 26 vll~i~~li~~lvlrP~ 42 (205)
+++-+++.++|++++++
T Consensus 30 ~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 30 LFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHhheEEEeCC
Confidence 44667778888887753
No 40
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.33 E-value=66 Score=23.60 Aligned_cols=21 Identities=19% Similarity=0.577 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHheeeeEEE
Q 028713 19 LWLCQVVIVWVLISVLIWLCL 39 (205)
Q Consensus 19 ~~~~~~lvll~i~~li~~lvl 39 (205)
...||.++.+.++.+++|..+
T Consensus 97 ~l~~~m~~f~lV~~fi~~~~l 117 (118)
T KOG3385|consen 97 SLLCWMAVFSLVAFFILWVWL 117 (118)
T ss_pred chHHHHHHHHHHHHHHhheee
Confidence 445666554445555555443
No 41
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=20.25 E-value=1.7e+02 Score=23.01 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=7.5
Q ss_pred EecCCcEEEEEEe
Q 028713 39 LKPISPVYMITNA 51 (205)
Q Consensus 39 lrP~~P~~~v~~~ 51 (205)
+.|..|..+|...
T Consensus 32 ~~~~~~~~~i~v~ 44 (175)
T PF04573_consen 32 FHPPSPSVSISVS 44 (175)
T ss_pred ccCCCCceEEEEE
Confidence 5666666655443
No 42
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=20.20 E-value=5.5e+02 Score=21.91 Aligned_cols=37 Identities=8% Similarity=0.194 Sum_probs=23.4
Q ss_pred EEEEEEeEeceeecCC----CCCCeeeeeEEEEEEEEeCCC
Q 028713 45 VYMITNAYVPALNQHN----STEPIRNNSVVNLNFELSNPN 81 (205)
Q Consensus 45 ~~~v~~~~v~~~~~~~----~~~~~~l~~~l~~~l~~~NPN 81 (205)
.|+..+.++..||+.. +.+..+++.+-.+..+++||-
T Consensus 91 t~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi 131 (288)
T KOG2621|consen 91 TFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPI 131 (288)
T ss_pred eeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHH
Confidence 6788888888888764 122234455555566666764
No 43
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=20.03 E-value=29 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=10.3
Q ss_pred HHheeeeEEEec--CCcEEEE
Q 028713 30 LISVLIWLCLKP--ISPVYMI 48 (205)
Q Consensus 30 i~~li~~lvlrP--~~P~~~v 48 (205)
.+++++||++-- ..|.|.|
T Consensus 8 a~~li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 8 AAALIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHHHHccccCceEEEE
Confidence 333777775433 3466654
Done!